Query gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 544
No_of_seqs 222 out of 1793
Neff 4.5
Searched_HMMs 39220
Date Mon May 23 13:04:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780195.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00337 PyrG CTP synthase; I 100.0 0 0 2131.9 46.7 534 1-536 3-571 (571)
2 PRK05380 pyrG CTP synthetase; 100.0 0 0 1968.1 55.2 531 1-543 1-533 (534)
3 COG0504 PyrG CTP synthase (UTP 100.0 0 0 1854.0 53.3 530 2-543 1-532 (533)
4 KOG2387 consensus 100.0 0 0 1661.1 46.2 528 2-541 1-551 (585)
5 pfam06418 CTP_synth_N CTP synt 100.0 0 0 1048.3 28.0 274 2-278 1-275 (275)
6 cd03113 CTGs CTP synthetase (C 100.0 0 0 994.6 27.1 253 3-257 1-255 (255)
7 cd01746 GATase1_CTP_Synthase T 100.0 0 0 753.9 20.4 234 292-534 1-235 (235)
8 PRK06186 hypothetical protein; 100.0 0 0 726.6 22.2 227 291-539 1-228 (229)
9 PRK11366 puuD gamma-glutamyl-g 100.0 1.2E-27 3.1E-32 219.9 17.8 177 338-543 53-250 (254)
10 COG2071 Predicted glutamine am 99.9 3.1E-25 7.8E-30 202.6 12.3 170 337-540 51-241 (243)
11 pfam07722 Peptidase_C26 Peptid 99.9 4.6E-24 1.2E-28 194.2 14.5 179 302-518 19-219 (219)
12 pfam00117 GATase Glutamine ami 99.9 4.6E-21 1.2E-25 172.5 11.7 181 303-534 2-184 (187)
13 cd01745 GATase1_2 Subgroup of 99.8 2.6E-20 6.7E-25 167.1 11.5 124 338-534 45-189 (189)
14 PRK00758 GMP synthase subunit 99.7 6.8E-16 1.7E-20 135.2 12.6 176 305-538 6-182 (184)
15 PRK13147 consensus 99.7 2.2E-15 5.6E-20 131.6 11.8 187 307-535 13-208 (211)
16 cd01742 GATase1_GMP_Synthase T 99.6 2.3E-15 5.9E-20 131.4 10.6 169 308-534 12-181 (181)
17 PRK13141 hisH imidazole glycer 99.6 4E-15 1E-19 129.7 11.8 183 307-536 13-202 (204)
18 PRK13143 hisH imidazole glycer 99.6 2.2E-15 5.7E-20 131.5 8.4 181 308-537 15-200 (201)
19 cd01744 GATase1_CPSase Small c 99.6 6.8E-15 1.7E-19 128.0 10.0 161 317-534 15-178 (178)
20 cd01748 GATase1_IGP_Synthase T 99.6 3E-15 7.5E-20 130.6 8.0 180 308-534 12-198 (198)
21 PRK05670 anthranilate synthase 99.6 2.3E-14 5.8E-19 124.2 10.3 185 305-539 6-190 (192)
22 PRK13176 consensus 99.6 3E-14 7.5E-19 123.4 9.7 190 307-535 13-213 (216)
23 cd01743 GATase1_Anthranilate_S 99.5 4.6E-14 1.2E-18 122.0 10.1 181 301-534 4-184 (184)
24 TIGR01368 CPSaseIIsmall carbam 99.5 1.1E-12 2.8E-17 112.1 16.8 252 192-537 121-381 (383)
25 COG0118 HisH Glutamine amidotr 99.5 4E-14 1E-18 122.5 9.1 181 307-535 14-201 (204)
26 PRK07649 para-aminobenzoate/an 99.5 1E-13 2.5E-18 119.6 11.0 183 305-538 6-189 (195)
27 PRK13152 hisH imidazole glycer 99.5 4.2E-14 1.1E-18 122.3 8.6 179 308-535 13-200 (201)
28 PRK12564 carbamoyl phosphate s 99.5 5.5E-13 1.4E-17 114.3 13.0 181 291-536 171-353 (355)
29 PRK13153 consensus 99.5 1.4E-13 3.6E-18 118.5 9.6 181 307-535 12-202 (203)
30 PRK08007 para-aminobenzoate sy 99.5 2.2E-13 5.7E-18 117.1 9.9 181 305-535 6-186 (187)
31 CHL00101 trpG anthranilate syn 99.5 3.1E-13 7.9E-18 116.1 10.3 184 302-537 6-189 (190)
32 PRK13181 hisH imidazole glycer 99.5 3.3E-14 8.5E-19 123.0 5.4 179 308-535 13-198 (199)
33 CHL00197 carA carbamoyl-phosph 99.5 4.7E-12 1.2E-16 107.5 16.3 261 192-542 118-382 (383)
34 PRK13527 glutamine amidotransf 99.5 2E-13 5.2E-18 117.4 9.2 84 293-388 2-90 (196)
35 pfam01174 SNO SNO glutamine am 99.5 2E-13 5.1E-18 117.4 8.8 73 302-388 3-81 (188)
36 CHL00188 hisH imidazole glycer 99.5 3.4E-14 8.7E-19 123.0 4.8 191 305-537 12-210 (210)
37 PRK13175 consensus 99.5 1.6E-13 4.1E-18 118.1 8.1 182 308-537 15-204 (206)
38 PRK13179 consensus 99.5 1.7E-13 4.4E-18 117.9 7.8 181 307-535 12-205 (207)
39 PRK07765 para-aminobenzoate sy 99.5 9.5E-13 2.4E-17 112.5 11.6 185 302-537 7-192 (221)
40 PRK13177 consensus 99.5 2.7E-13 6.9E-18 116.5 8.6 181 307-535 15-204 (207)
41 PRK13146 hisH imidazole glycer 99.5 1E-13 2.6E-18 119.5 6.4 183 307-535 14-205 (208)
42 TIGR00888 guaA_Nterm GMP synth 99.5 1.2E-13 3.1E-18 118.9 6.7 156 330-535 23-189 (195)
43 PRK13173 consensus 99.5 5.9E-13 1.5E-17 114.0 10.1 176 307-535 14-208 (211)
44 PRK13171 consensus 99.5 5.1E-13 1.3E-17 114.5 9.2 178 307-537 14-198 (200)
45 TIGR01855 IMP_synth_hisH imida 99.4 9E-14 2.3E-18 119.9 5.2 182 307-534 15-209 (211)
46 PRK06895 para-aminobenzoate sy 99.4 2.6E-12 6.6E-17 109.4 11.6 179 302-535 9-188 (191)
47 PRK06774 para-aminobenzoate sy 99.4 1.7E-12 4.2E-17 110.8 10.0 182 304-535 5-190 (191)
48 PRK13174 consensus 99.4 1.4E-12 3.6E-17 111.3 9.6 178 307-535 14-207 (212)
49 PRK13148 consensus 99.4 4.7E-13 1.2E-17 114.7 6.8 181 307-534 14-221 (225)
50 PRK13525 glutamine amidotransf 99.4 3.8E-13 9.8E-18 115.4 6.2 79 292-388 2-85 (191)
51 PRK13178 consensus 99.4 7.5E-13 1.9E-17 113.3 7.3 185 307-541 12-210 (213)
52 PRK13144 consensus 99.4 1.9E-12 4.7E-17 110.4 8.6 176 306-538 12-189 (190)
53 PRK12838 carbamoyl phosphate s 99.4 1.1E-12 2.8E-17 112.1 7.3 175 308-542 179-355 (356)
54 PRK13170 hisH imidazole glycer 99.4 3.5E-12 9E-17 108.4 9.7 175 307-535 13-195 (196)
55 PRK13180 consensus 99.4 6.2E-13 1.6E-17 113.9 5.7 185 307-535 14-207 (209)
56 PRK01077 cobyrinic acid a,c-di 99.4 1.2E-09 3.2E-14 90.1 22.3 407 6-539 6-451 (451)
57 PRK13151 consensus 99.3 5.2E-13 1.3E-17 114.4 3.1 175 307-536 13-193 (195)
58 PRK08857 para-aminobenzoate sy 99.3 9.3E-12 2.4E-16 105.4 9.2 181 302-535 6-191 (192)
59 COG0505 CarA Carbamoylphosphat 99.3 3.6E-11 9.3E-16 101.1 10.8 173 309-543 192-368 (368)
60 PRK13172 consensus 99.3 5E-12 1.3E-16 107.3 6.1 182 307-535 14-212 (213)
61 cd01747 GATase1_Glutamyl_Hydro 99.3 5.8E-11 1.5E-15 99.7 11.3 185 300-518 13-213 (273)
62 cd01749 GATase1_PB Glutamine A 99.3 2.1E-11 5.3E-16 102.9 8.8 74 301-388 4-82 (183)
63 PRK13566 anthranilate synthase 99.2 3.1E-10 7.9E-15 94.4 11.8 196 297-541 522-719 (724)
64 cd01741 GATase1_1 Subgroup of 99.2 1.7E-10 4.4E-15 96.3 9.6 147 323-518 26-180 (188)
65 PRK09522 bifunctional anthrani 99.2 3.3E-10 8.5E-15 94.2 11.1 183 303-538 6-191 (531)
66 PRK13142 hisH imidazole glycer 99.2 2.2E-11 5.6E-16 102.7 3.8 167 307-536 12-187 (192)
67 PRK05637 anthranilate synthase 99.2 5.1E-10 1.3E-14 92.8 10.6 184 304-539 7-207 (208)
68 PRK00784 cobyric acid synthase 99.2 2.7E-09 7E-14 87.6 14.3 329 1-419 2-364 (492)
69 PRK00074 guaA GMP synthase; Re 99.1 1.2E-10 3E-15 97.5 6.2 142 346-536 47-189 (513)
70 TIGR01823 PabB-fungal para-ami 99.1 8.6E-10 2.2E-14 91.2 8.1 219 300-542 10-247 (851)
71 PRK07567 glutamine amidotransf 99.0 8.8E-09 2.2E-13 83.9 10.0 146 323-521 32-194 (242)
72 PRK09065 glutamine amidotransf 99.0 5.7E-09 1.4E-13 85.3 8.9 134 342-521 52-192 (238)
73 PRK06490 glutamine amidotransf 98.9 2.4E-08 6.2E-13 80.7 10.7 130 342-521 52-187 (243)
74 TIGR00566 trpG_papA glutamine 98.9 2.5E-09 6.3E-14 87.9 5.3 186 305-535 6-211 (212)
75 COG0512 PabA Anthranilate/para 98.9 3.1E-08 7.9E-13 80.0 10.8 183 304-536 7-190 (191)
76 COG0518 GuaA GMP synthase - Gl 98.9 6.2E-09 1.6E-13 85.0 7.1 135 346-534 45-190 (198)
77 KOG1224 consensus 98.8 3.4E-08 8.6E-13 79.7 9.9 198 290-540 13-220 (767)
78 PRK07053 glutamine amidotransf 98.8 3.9E-08 9.9E-13 79.3 10.2 156 323-536 26-192 (235)
79 PRK08250 glutamine amidotransf 98.8 7.1E-08 1.8E-12 77.4 11.1 159 322-538 23-195 (235)
80 PRK05665 amidotransferase; Pro 98.8 3.4E-07 8.7E-12 72.5 13.4 161 306-520 23-189 (240)
81 TIGR01815 TrpE-clade3 anthrani 98.8 9.9E-09 2.5E-13 83.6 5.0 129 347-519 568-697 (726)
82 KOG0623 consensus 98.6 3.8E-08 9.7E-13 79.4 3.4 170 306-521 13-193 (541)
83 COG0047 PurL Phosphoribosylfor 98.5 9.5E-06 2.4E-10 62.1 14.0 171 320-535 25-228 (231)
84 COG1797 CobB Cobyrinic acid a, 98.4 9.5E-06 2.4E-10 62.0 12.1 403 6-537 3-450 (451)
85 PRK03619 phosphoribosylformylg 98.3 5.7E-05 1.4E-09 56.5 14.5 178 311-538 18-221 (223)
86 KOG1622 consensus 98.2 3.4E-06 8.6E-11 65.3 5.8 156 325-534 36-201 (552)
87 TIGR01737 FGAM_synth_I phospho 98.2 2.1E-05 5.3E-10 59.6 9.2 184 320-536 24-263 (264)
88 KOG0370 consensus 98.1 2E-05 5.1E-10 59.7 7.7 146 346-543 210-358 (1435)
89 PRK01175 phosphoribosylformylg 98.1 0.00084 2.1E-08 48.0 15.9 168 310-518 20-221 (255)
90 KOG3179 consensus 98.0 2E-05 5.1E-10 59.7 6.4 164 300-523 23-198 (245)
91 cd01740 GATase1_FGAR_AT Type 1 97.9 2E-05 5E-10 59.8 5.3 71 311-389 16-96 (238)
92 COG0311 PDX2 Predicted glutami 97.9 0.00012 3.2E-09 54.0 9.2 79 303-398 8-91 (194)
93 pfam07685 GATase_3 CobB/CobQ-l 97.9 7.5E-06 1.9E-10 62.8 2.9 71 343-420 4-80 (158)
94 PRK13896 cobyrinic acid a,c-di 97.8 0.0053 1.3E-07 42.3 17.7 132 288-456 229-365 (432)
95 cd01653 GATase1 Type 1 glutami 97.7 7E-05 1.8E-09 55.8 5.8 79 303-388 10-92 (115)
96 KOG1559 consensus 97.7 0.00023 5.9E-09 52.1 8.0 171 337-537 102-295 (340)
97 cd01750 GATase1_CobQ Type 1 gl 97.7 3.9E-05 1E-09 57.6 3.8 62 319-388 18-85 (194)
98 KOG0026 consensus 97.7 8.9E-05 2.3E-09 55.1 5.4 172 319-536 40-213 (223)
99 cd03128 GAT_1 Type 1 glutamine 97.7 9.1E-05 2.3E-09 55.0 5.4 87 295-388 2-92 (92)
100 PRK00090 bioD dithiobiotin syn 97.2 0.0016 4.2E-08 45.9 6.7 192 5-239 2-200 (223)
101 cd03130 GATase1_CobB Type 1 gl 97.0 0.0017 4.4E-08 45.8 5.7 173 306-524 12-192 (198)
102 pfam02374 ArsA_ATPase Anion-tr 96.8 0.028 7.1E-07 37.0 10.2 44 2-47 1-44 (304)
103 PRK05368 homoserine O-succinyl 96.7 0.031 8E-07 36.7 9.8 185 290-522 34-241 (302)
104 pfam01656 CbiA CobQ/CobB/MinD/ 96.6 0.081 2.1E-06 33.7 13.3 177 12-232 7-196 (212)
105 pfam04204 HTS Homoserine O-suc 96.6 0.033 8.4E-07 36.5 9.4 185 290-522 33-240 (298)
106 cd02035 ArsA ArsA ATPase funct 96.5 0.098 2.5E-06 33.1 13.6 167 4-213 1-179 (217)
107 COG0132 BioD Dethiobiotin synt 96.3 0.012 3E-07 39.7 5.9 181 1-226 1-187 (223)
108 PRK13526 glutamine amidotransf 96.2 0.0053 1.3E-07 42.3 3.4 75 292-388 3-85 (179)
109 KOG3210 consensus 95.7 0.24 6.1E-06 30.3 10.2 78 301-388 17-104 (226)
110 cd00550 ArsA_ATPase Oxyanion-t 95.6 0.25 6.5E-06 30.1 12.9 187 3-213 1-198 (254)
111 TIGR00313 cobQ cobyric acid sy 95.6 0.011 2.8E-07 40.0 3.0 293 8-389 3-336 (502)
112 cd02040 NifH NifH gene encodes 95.5 0.1 2.6E-06 32.9 7.7 47 2-50 1-47 (270)
113 PRK12374 putative dithiobiotin 95.4 0.027 7E-07 37.1 4.7 193 1-237 1-200 (231)
114 PRK05297 phosphoribosylformylg 95.3 0.27 7E-06 29.9 9.3 73 308-388 1053-1140(1294)
115 COG1492 CobQ Cobyric acid synt 95.2 0.013 3.4E-07 39.3 2.4 281 3-388 2-338 (486)
116 cd01983 Fer4_NifH The Fer4_Nif 94.9 0.096 2.4E-06 33.2 6.0 33 5-39 2-34 (99)
117 pfam09140 MipZ ATPase MipZ. Mi 94.6 0.48 1.2E-05 28.1 9.0 175 4-216 1-183 (261)
118 CHL00175 minD septum-site dete 94.5 0.34 8.8E-06 29.2 8.3 46 1-47 12-58 (279)
119 PRK01911 ppnK inorganic polyph 94.5 0.089 2.3E-06 33.4 5.2 86 292-384 1-95 (290)
120 PRK01231 ppnK inorganic polyph 94.4 0.14 3.5E-06 32.1 6.0 86 292-384 5-95 (296)
121 PRK06278 cobyrinic acid a,c-di 94.3 0.04 1E-06 35.9 3.1 55 214-269 149-205 (482)
122 PRK04759 consensus 94.1 0.16 4.2E-06 31.5 5.8 83 292-384 6-97 (294)
123 PRK03378 ppnK inorganic polyph 94.1 0.17 4.3E-06 31.4 5.9 83 292-384 6-96 (292)
124 COG0003 ArsA Predicted ATPase 93.9 0.14 3.5E-06 32.1 5.1 50 1-52 1-50 (322)
125 TIGR03453 partition_RepA plasm 93.8 0.69 1.8E-05 27.0 10.4 32 14-45 115-146 (387)
126 PRK13869 plasmid-partitioning 93.7 0.63 1.6E-05 27.3 8.3 33 14-46 132-164 (405)
127 PRK04539 ppnK inorganic polyph 93.6 0.21 5.2E-06 30.8 5.6 86 292-384 6-101 (296)
128 PRK02649 ppnK inorganic polyph 93.6 0.18 4.6E-06 31.2 5.2 82 293-384 3-101 (305)
129 PRK03372 ppnK inorganic polyph 93.4 0.24 6.2E-06 30.3 5.7 87 291-384 4-102 (303)
130 PRK10818 cell division inhibit 93.1 0.59 1.5E-05 27.5 7.3 44 1-45 1-44 (270)
131 PRK02155 ppnK inorganic polyph 93.0 0.27 6.9E-06 30.0 5.4 86 292-384 6-96 (291)
132 cd03114 ArgK-like The function 92.8 0.95 2.4E-05 26.0 9.9 38 7-46 4-41 (148)
133 COG2894 MinD Septum formation 92.7 0.22 5.6E-06 30.6 4.6 150 1-247 1-152 (272)
134 pfam01965 DJ-1_PfpI DJ-1/PfpI 92.6 0.091 2.3E-06 33.4 2.5 45 344-388 32-80 (141)
135 cd03131 GATase1_HTS Type 1 glu 92.5 0.35 8.9E-06 29.1 5.4 47 344-390 60-113 (175)
136 cd03137 GATase1_AraC_1 AraC tr 92.4 0.7 1.8E-05 27.0 6.9 83 306-388 13-109 (187)
137 cd03135 GATase1_DJ-1 Type 1 gl 92.3 0.14 3.7E-06 31.9 3.3 45 344-388 58-106 (163)
138 PRK03708 ppnK inorganic polyph 92.2 0.4 1E-05 28.8 5.4 85 292-384 1-89 (278)
139 cd02037 MRP-like MRP (Multiple 92.1 1.2 3E-05 25.4 7.8 121 13-213 9-131 (169)
140 TIGR01382 PfpI intracellular p 91.4 0.087 2.2E-06 33.5 1.3 45 345-389 75-123 (189)
141 cd03134 GATase1_PfpI_like A ty 91.1 0.19 5E-06 31.0 2.9 45 344-388 60-107 (165)
142 PRK13233 nifH nitrogenase redu 91.0 0.52 1.3E-05 27.9 5.0 44 1-46 1-45 (275)
143 PRK06761 hypothetical protein; 91.0 0.42 1.1E-05 28.6 4.5 35 1-37 1-35 (281)
144 PRK02645 ppnK inorganic polyph 90.8 0.78 2E-05 26.6 5.7 80 293-384 5-91 (304)
145 COG0693 ThiJ Putative intracel 90.6 0.25 6.5E-06 30.1 3.1 45 344-388 64-112 (188)
146 cd01391 Periplasmic_Binding_Pr 90.6 1 2.7E-05 25.7 6.2 27 307-333 15-41 (269)
147 cd03139 GATase1_PfpI_2 Type 1 90.6 1.1 2.9E-05 25.4 6.4 82 306-388 13-107 (183)
148 PRK00081 coaE dephospho-CoA ki 90.5 0.13 3.4E-06 32.2 1.5 171 1-228 1-173 (199)
149 cd06302 PBP1_LsrB_Quorum_Sensi 90.4 1.4 3.5E-05 24.8 6.7 11 194-204 72-82 (298)
150 cd02117 NifH_like This family 90.0 0.84 2.1E-05 26.4 5.3 44 3-48 1-44 (212)
151 cd01833 XynB_like SGNH_hydrola 89.9 1.4 3.6E-05 24.8 6.4 87 87-188 8-98 (157)
152 pfam00142 Fer4_NifH 4Fe-4S iro 89.7 0.52 1.3E-05 27.9 4.1 42 5-48 3-44 (269)
153 PRK13230 nitrogenase reductase 89.1 1.2 3E-05 25.4 5.4 47 2-50 1-47 (292)
154 cd02042 ParA ParA and ParB of 88.8 1.2 3.1E-05 25.3 5.4 32 12-43 8-39 (104)
155 PRK10751 molybdopterin-guanine 88.5 1.3 3.3E-05 25.1 5.3 41 1-43 1-41 (170)
156 PRK01713 ornithine carbamoyltr 88.5 2.3 5.8E-05 23.2 10.6 112 182-335 81-192 (334)
157 TIGR00750 lao LAO/AO transport 88.2 0.98 2.5E-05 25.9 4.6 142 5-219 41-198 (333)
158 COG1763 MobB Molybdopterin-gua 88.2 1.3 3.4E-05 25.0 5.2 55 1-57 1-56 (161)
159 cd03140 GATase1_PfpI_3 Type 1 87.9 0.65 1.6E-05 27.2 3.5 45 344-388 58-104 (170)
160 PRK13185 chlL protochlorophyll 87.1 1.7 4.4E-05 24.1 5.3 45 1-49 1-45 (269)
161 cd03144 GATase1_ScBLP_like Typ 86.7 0.39 9.9E-06 28.8 1.8 74 311-388 12-90 (114)
162 cd03109 DTBS Dethiobiotin synt 86.3 1.4 3.5E-05 24.9 4.4 127 4-237 2-133 (134)
163 cd06305 PBP1_methylthioribose_ 85.9 2.8 7.3E-05 22.6 5.9 82 293-381 1-86 (273)
164 cd02028 UMPK_like Uridine mono 85.8 1.8 4.7E-05 23.9 4.9 39 5-45 2-40 (179)
165 PRK13235 nifH nitrogenase redu 85.6 1.9 4.9E-05 23.8 4.9 44 2-47 1-44 (274)
166 cd03138 GATase1_AraC_2 AraC tr 85.5 3.3 8.4E-05 22.1 7.2 83 306-388 13-117 (195)
167 TIGR00379 cobB cobyrinic acid 85.4 2.7 6.9E-05 22.7 5.6 383 6-496 2-429 (464)
168 PRK13768 GTPase; Provisional 85.3 2.5 6.5E-05 22.9 5.4 134 1-177 1-137 (253)
169 PRK13231 nitrogenase reductase 85.2 2.2 5.5E-05 23.4 5.0 42 1-45 1-42 (264)
170 PRK10037 cell division protein 85.2 2.2 5.5E-05 23.4 5.0 41 2-43 1-41 (250)
171 pfam01513 NAD_kinase ATP-NAD k 85.1 1.5 3.9E-05 24.5 4.2 36 344-384 33-68 (243)
172 PRK11574 hypothetical protein; 84.7 0.64 1.6E-05 27.2 2.1 45 344-388 64-112 (196)
173 cd03169 GATase1_PfpI_1 Type 1 84.6 1.1 2.7E-05 25.6 3.2 45 344-388 74-121 (180)
174 cd03146 GAT1_Peptidase_E Type 84.3 3.7 9.4E-05 21.8 6.8 90 289-388 29-127 (212)
175 PRK11670 putative ATPase; Prov 84.3 1.7 4.3E-05 24.2 4.2 24 363-386 256-279 (369)
176 COG0489 Mrp ATPases involved i 84.3 3.7 9.4E-05 21.7 6.7 158 3-207 57-222 (265)
177 PRK13232 nifH nitrogenase redu 84.1 2.6 6.8E-05 22.8 5.1 45 2-48 1-45 (273)
178 cd03116 MobB Molybdenum is an 84.0 3.4 8.6E-05 22.0 5.6 40 2-43 1-40 (159)
179 cd03133 GATase1_ES1 Type 1 glu 83.9 0.72 1.8E-05 26.9 2.1 45 344-388 80-138 (213)
180 cd02034 CooC The accessory pro 83.4 2.9 7.5E-05 22.5 5.1 36 5-42 2-37 (116)
181 TIGR00347 bioD dethiobiotin sy 82.8 1.5 3.8E-05 24.6 3.3 162 6-206 1-179 (187)
182 KOG2825 consensus 82.4 1.8 4.6E-05 24.0 3.7 43 2-46 19-61 (323)
183 PHA02518 ParA-like protein; Pr 82.4 4.4 0.00011 21.2 12.6 33 13-45 10-42 (211)
184 PRK11780 isoprenoid biosynthes 82.3 0.6 1.5E-05 27.4 1.2 44 345-388 84-141 (217)
185 cd02032 Bchl_like This family 82.2 1.9 4.9E-05 23.8 3.7 34 13-46 9-42 (267)
186 pfam06564 YhjQ YhjQ protein. T 82.1 3.9 9.8E-05 21.6 5.3 42 2-44 1-42 (244)
187 PRK13236 nitrogenase reductase 82.1 3.4 8.7E-05 22.0 5.0 40 2-43 6-45 (295)
188 PRK13705 plasmid-partitioning 81.6 4.6 0.00012 21.1 8.2 33 14-46 117-150 (388)
189 TIGR03371 cellulose_yhjQ cellu 81.6 2.3 5.8E-05 23.3 3.9 41 2-43 1-41 (246)
190 PRK12743 acetoin dehydrogenase 81.5 3.1 7.9E-05 22.3 4.6 32 1-38 1-32 (253)
191 PRK13234 nifH nitrogenase redu 81.2 3.8 9.8E-05 21.6 5.0 40 2-43 4-43 (293)
192 CHL00072 chlL photochlorophyll 80.9 2.2 5.6E-05 23.4 3.7 37 13-52 9-45 (271)
193 TIGR01011 rpsB_bact ribosomal 80.9 1.9 4.9E-05 23.8 3.4 70 152-240 147-225 (227)
194 cd02036 MinD Bacterial cell di 80.7 2.6 6.7E-05 22.8 4.0 32 13-44 9-40 (179)
195 PHA02519 plasmid partition pro 80.6 2.5 6.3E-05 23.0 3.8 31 14-44 117-148 (387)
196 TIGR01968 minD_bact septum sit 80.5 2.4 6.2E-05 23.1 3.8 39 3-42 2-40 (272)
197 cd06310 PBP1_ABC_sugar_binding 80.2 5.1 0.00013 20.7 7.6 34 346-382 183-217 (273)
198 pfam04392 ABC_sub_bind ABC tra 80.2 5.1 0.00013 20.7 8.3 192 152-382 20-217 (292)
199 TIGR00176 mobB molybdopterin-g 80.0 3.6 9.2E-05 21.8 4.5 68 12-84 7-78 (165)
200 pfam02424 ApbE ApbE family. Th 80.0 3.3 8.4E-05 22.1 4.3 13 308-320 76-88 (254)
201 PRK13371 4-hydroxy-3-methylbut 79.9 5.3 0.00013 20.6 7.7 188 185-383 82-329 (392)
202 PRK09291 short chain dehydroge 79.9 2.6 6.6E-05 22.9 3.7 31 1-37 1-31 (257)
203 PRK04155 chaperone protein Hch 79.6 1.5 3.7E-05 24.7 2.4 42 345-386 147-192 (288)
204 PRK02231 ppnK inorganic polyph 79.6 2 5.2E-05 23.6 3.2 67 313-384 4-75 (272)
205 PRK08017 short chain dehydroge 79.4 2.8 7.1E-05 22.6 3.8 32 1-38 1-32 (256)
206 cd06343 PBP1_ABC_ligand_bindin 78.9 2.9 7.4E-05 22.5 3.8 76 292-376 145-224 (362)
207 cd03136 GATase1_AraC_ArgR_like 78.7 5.7 0.00015 20.4 7.0 81 308-388 15-108 (185)
208 COG1192 Soj ATPases involved i 78.7 4.8 0.00012 20.9 4.8 44 1-45 1-45 (259)
209 TIGR01880 Ac-peptdase-euk N-ac 78.6 1.9 4.8E-05 23.9 2.7 34 149-185 119-153 (433)
210 pfam10113 Fibrillarin_2 Fibril 78.0 6 0.00015 20.3 7.4 93 65-173 119-228 (505)
211 cd06312 PBP1_ABC_sugar_binding 77.9 6 0.00015 20.2 6.8 46 345-395 182-228 (271)
212 PRK06483 short chain dehydroge 77.2 3.2 8.1E-05 22.2 3.6 32 1-38 1-32 (236)
213 pfam09825 BPL_N Biotin-protein 77.2 4.3 0.00011 21.3 4.2 83 300-386 6-93 (364)
214 COG3442 Predicted glutamine am 77.1 2 5.1E-05 23.7 2.5 204 291-541 3-219 (250)
215 PRK07085 diphosphate--fructose 77.0 6.3 0.00016 20.1 5.4 123 291-424 105-279 (557)
216 cd03141 GATase1_Hsp31_like Typ 76.9 2.4 6.2E-05 23.1 2.9 45 344-388 88-136 (221)
217 cd06317 PBP1_ABC_sugar_binding 76.4 6.6 0.00017 19.9 5.9 63 140-213 2-64 (275)
218 PRK01390 murD UDP-N-acetylmura 76.2 6.7 0.00017 19.9 5.8 25 16-40 16-40 (457)
219 cd00765 Pyrophosphate_PFK Phos 76.0 2.4 6E-05 23.1 2.6 122 291-424 105-279 (550)
220 PRK00561 ppnK inorganic polyph 75.8 1.3 3.3E-05 25.0 1.2 23 131-160 32-54 (259)
221 PRK06482 short chain dehydroge 75.8 4 0.0001 21.5 3.7 33 1-39 1-33 (276)
222 TIGR00455 apsK adenylylsulfate 75.7 5.4 0.00014 20.6 4.4 33 5-39 22-54 (187)
223 PRK05693 short chain dehydroge 75.6 3.6 9.1E-05 21.8 3.5 31 2-38 1-31 (274)
224 pfam00463 ICL Isocitrate lyase 75.5 4.3 0.00011 21.3 3.8 214 152-391 166-403 (526)
225 cd03147 GATase1_Ydr533c_like T 74.6 2.3 5.8E-05 23.3 2.3 43 344-386 92-138 (231)
226 cd06326 PBP1_STKc_like Type I 74.0 5.1 0.00013 20.7 3.9 14 103-116 33-46 (336)
227 PRK04885 ppnK inorganic polyph 74.0 3 7.6E-05 22.4 2.7 10 375-384 61-70 (265)
228 PRK05417 glutathione-dependent 73.5 3 7.8E-05 22.4 2.7 41 500-540 105-145 (191)
229 PRK07413 hypothetical protein; 73.4 5.3 0.00014 20.6 3.9 31 11-41 24-62 (382)
230 COG1703 ArgK Putative periplas 73.3 7.8 0.0002 19.4 5.0 143 5-212 54-197 (323)
231 PRK09393 ftrA transcriptional 73.2 7.8 0.0002 19.4 6.8 89 307-401 23-124 (320)
232 PRK00208 thiG thiazole synthas 72.8 8 0.0002 19.3 4.7 73 297-374 17-89 (256)
233 cd06271 PBP1_AglR_RafR_like Li 72.4 8.1 0.00021 19.3 5.2 47 290-337 119-165 (268)
234 cd01539 PBP1_GGBP Periplasmic 72.4 8.1 0.00021 19.3 7.8 16 195-212 49-64 (303)
235 PRK06924 short chain dehydroge 72.3 5 0.00013 20.8 3.5 31 2-38 1-31 (251)
236 COG0125 Tmk Thymidylate kinase 72.2 8.2 0.00021 19.2 5.9 41 1-43 2-42 (208)
237 PRK02102 ornithine carbamoyltr 71.6 8.5 0.00022 19.1 8.7 128 152-335 64-191 (331)
238 cd02033 BchX Chlorophyllide re 71.4 5.4 0.00014 20.6 3.5 177 3-238 32-239 (329)
239 PRK01185 ppnK inorganic polyph 71.2 5.8 0.00015 20.4 3.6 78 292-385 1-83 (272)
240 cd06325 PBP1_ABC_uncharacteriz 71.2 8.7 0.00022 19.1 7.7 191 152-381 20-217 (281)
241 COG1618 Predicted nucleotide k 70.7 8.6 0.00022 19.1 4.4 116 1-160 4-127 (179)
242 cd04728 ThiG Thiazole synthase 70.7 8.4 0.00021 19.2 4.4 73 297-374 16-88 (248)
243 cd00561 CobA_CobO_BtuR ATP:cor 70.2 6.2 0.00016 20.1 3.6 30 11-40 7-38 (159)
244 PRK05993 short chain dehydroge 70.1 6.4 0.00016 20.0 3.7 32 1-38 3-34 (277)
245 cd06294 PBP1_ycjW_transcriptio 70.0 8.2 0.00021 19.3 4.2 93 276-376 108-207 (270)
246 PRK07707 consensus 69.9 6 0.00015 20.2 3.5 31 1-37 1-31 (239)
247 pfam02572 CobA_CobO_BtuR ATP:c 69.9 6.5 0.00017 20.0 3.7 31 11-41 8-40 (172)
248 PRK05986 cob(I)yrinic acid a,c 69.7 6.6 0.00017 19.9 3.7 30 11-40 27-58 (190)
249 PRK06916 adenosylmethionine--8 69.5 9.4 0.00024 18.8 5.7 13 116-128 77-89 (462)
250 PRK07414 cob(I)yrinic acid a,c 69.5 6.3 0.00016 20.1 3.6 30 11-40 26-57 (178)
251 cd06319 PBP1_ABC_sugar_binding 69.4 9.4 0.00024 18.8 5.5 60 140-212 2-62 (277)
252 PRK10461 thiamine biosynthesis 69.3 9.4 0.00024 18.8 5.3 13 366-378 194-206 (351)
253 COG3155 ElbB Uncharacterized p 68.9 2 5E-05 23.7 0.8 80 256-358 18-97 (217)
254 cd01536 PBP1_ABC_sugar_binding 68.6 9.7 0.00025 18.7 6.1 26 346-377 181-206 (267)
255 PRK03202 6-phosphofructokinase 68.6 2.8 7.2E-05 22.6 1.6 37 1-39 1-39 (323)
256 PRK05480 uridine kinase; Provi 68.6 9.7 0.00025 18.7 4.3 52 1-57 2-56 (209)
257 PRK04761 ppnK inorganic polyph 68.4 2.4 6.1E-05 23.1 1.2 36 344-384 23-58 (246)
258 PRK09730 hypothetical protein; 68.2 6.2 0.00016 20.1 3.3 30 2-37 1-30 (247)
259 PRK10846 bifunctional folylpol 68.0 8 0.0002 19.3 3.8 32 3-38 50-81 (416)
260 PRK13849 putative crown gall t 68.0 8.9 0.00023 19.0 4.1 32 13-44 11-42 (231)
261 TIGR00708 cobA cob(I)alamin ad 67.6 7.2 0.00018 19.7 3.5 30 11-40 10-41 (191)
262 pfam07015 VirC1 VirC1 protein. 67.6 9.1 0.00023 18.9 4.0 32 13-44 11-42 (231)
263 PRK05654 acetyl-CoA carboxylas 67.3 5.3 0.00013 20.6 2.8 108 354-488 138-263 (288)
264 PRK06696 uridine kinase; Valid 66.9 9 0.00023 19.0 3.9 41 5-47 29-69 (227)
265 PRK08263 short chain dehydroge 66.8 7.8 0.0002 19.4 3.6 35 1-41 2-36 (275)
266 pfam10686 DUF2493 Protein of u 66.7 5.2 0.00013 20.7 2.6 30 347-379 32-61 (71)
267 PRK01184 hypothetical protein; 66.7 8.6 0.00022 19.1 3.8 29 2-36 1-29 (183)
268 PRK07667 uridine kinase; Provi 66.5 9.8 0.00025 18.7 4.0 39 5-45 17-55 (190)
269 COG1341 Predicted GTPase or GT 66.4 11 0.00027 18.4 4.9 49 4-54 75-125 (398)
270 PRK09185 3-oxoacyl-(acyl carri 66.3 3 7.7E-05 22.4 1.4 27 1-27 1-28 (395)
271 TIGR01499 folC FolC bifunction 66.1 8.9 0.00023 19.0 3.7 37 3-44 22-59 (460)
272 COG0061 nadF NAD kinase [Coenz 66.1 7.7 0.0002 19.5 3.4 35 345-384 54-88 (281)
273 PRK06101 short chain dehydroge 66.0 7.5 0.00019 19.5 3.4 33 2-40 1-33 (241)
274 PRK08849 2-octaprenyl-3-methyl 65.9 10 0.00027 18.5 4.1 35 1-42 1-37 (384)
275 cd06309 PBP1_YtfQ_like Peripla 65.9 11 0.00028 18.3 5.5 17 194-212 46-62 (273)
276 PRK06123 short chain dehydroge 65.9 8 0.0002 19.3 3.5 30 2-37 3-32 (249)
277 COG2403 Predicted GTPase [Gene 65.8 8.3 0.00021 19.2 3.5 33 8-40 131-163 (449)
278 PRK05926 hypothetical protein; 65.8 7.8 0.0002 19.4 3.4 99 119-226 102-201 (371)
279 COG4285 Uncharacterized conser 65.8 11 0.00027 18.4 4.1 67 325-394 31-103 (253)
280 TIGR01281 DPOR_bchL light-inde 65.6 7.8 0.0002 19.4 3.4 30 14-43 10-39 (275)
281 TIGR01857 FGAM-synthase phosph 65.5 8.9 0.00023 19.0 3.6 175 190-389 922-1128(1279)
282 cd06314 PBP1_tmGBP Periplasmic 65.4 11 0.00028 18.3 6.2 46 345-395 178-224 (271)
283 PRK05964 adenosylmethionine--8 65.4 11 0.00029 18.3 6.4 13 116-128 61-73 (421)
284 COG0455 flhG Antiactivator of 65.4 11 0.00029 18.3 5.6 173 1-229 1-193 (262)
285 cd02038 FleN-like FleN is a me 65.3 10 0.00026 18.6 3.9 31 12-42 8-38 (139)
286 PRK07102 short chain dehydroge 65.1 8.3 0.00021 19.2 3.4 33 2-40 1-33 (243)
287 cd06323 PBP1_ribose_binding Pe 64.5 12 0.0003 18.2 5.1 30 324-353 152-188 (268)
288 PRK06940 short chain dehydroge 64.5 12 0.0003 18.2 4.4 31 1-38 3-33 (277)
289 pfam05516 consensus 64.3 4.7 0.00012 21.0 2.0 19 384-402 117-135 (136)
290 COG1660 Predicted P-loop-conta 64.0 6.3 0.00016 20.1 2.7 204 2-297 1-249 (286)
291 cd00763 Bacterial_PFK Phosphof 64.0 3.3 8.5E-05 22.1 1.2 32 5-38 5-36 (317)
292 PRK06180 short chain dehydroge 63.2 9.9 0.00025 18.6 3.5 33 1-39 3-35 (277)
293 cd03148 GATase1_EcHsp31_like T 63.0 6.3 0.00016 20.1 2.5 44 344-387 94-141 (232)
294 COG1348 NifH Nitrogenase subun 62.9 8.5 0.00022 19.1 3.1 31 13-43 10-40 (278)
295 PRK01368 murD UDP-N-acetylmura 62.9 12 0.00032 18.0 5.1 57 325-382 318-376 (450)
296 PRK05282 peptidase E; Validate 62.8 12 0.00032 17.9 7.6 76 303-388 45-126 (233)
297 PRK10416 cell division protein 62.8 12 0.00032 17.9 5.0 47 349-396 297-345 (499)
298 cd06330 PBP1_Arsenic_SBP_like 62.6 9.2 0.00023 18.9 3.3 85 290-383 137-231 (346)
299 PRK12384 sorbitol-6-phosphate 62.5 12 0.00029 18.2 3.8 32 1-38 1-32 (259)
300 cd06273 PBP1_GntR_like_1 This 62.4 13 0.00032 17.9 5.3 159 140-336 2-161 (268)
301 TIGR01087 murD UDP-N-acetylmur 62.2 13 0.00032 17.9 4.3 53 15-68 5-59 (476)
302 PRK05416 hypothetical protein; 62.1 8.3 0.00021 19.2 3.0 237 1-297 5-254 (292)
303 PRK05854 short chain dehydroge 61.9 8.7 0.00022 19.1 3.1 29 3-37 15-43 (314)
304 PRK08445 hypothetical protein; 61.5 11 0.00027 18.5 3.4 99 119-226 75-175 (348)
305 pfam05690 ThiG Thiazole biosyn 61.0 13 0.00034 17.7 4.5 73 297-374 15-87 (246)
306 PRK00062 glutamate-1-semialdeh 60.8 13 0.00034 17.7 6.4 23 189-211 118-140 (429)
307 KOG0443 consensus 60.6 2.8 7.1E-05 22.6 0.3 228 4-259 118-378 (827)
308 PRK12824 acetoacetyl-CoA reduc 60.4 13 0.00034 17.8 3.7 32 1-38 1-32 (245)
309 cd06334 PBP1_ABC_ligand_bindin 60.3 12 0.00031 18.1 3.5 81 292-381 141-227 (351)
310 COG3640 CooC CO dehydrogenase 59.8 14 0.00036 17.6 4.0 39 5-45 3-42 (255)
311 cd06320 PBP1_allose_binding Pe 59.8 14 0.00036 17.6 7.6 18 192-211 45-63 (275)
312 pfam03575 Peptidase_S51 Peptid 59.8 14 0.00036 17.6 4.4 64 320-388 11-82 (154)
313 PRK05632 phosphate acetyltrans 59.4 14 0.00036 17.5 12.2 180 3-225 2-184 (702)
314 COG2109 BtuR ATP:corrinoid ade 59.3 13 0.00033 17.9 3.5 30 11-40 33-64 (198)
315 pfam00365 PFK Phosphofructokin 59.3 4.3 0.00011 21.3 1.1 42 346-392 92-146 (279)
316 TIGR02717 AcCoA-syn-alpha acet 59.2 10 0.00026 18.6 3.0 74 306-386 56-136 (457)
317 PRK01747 mnmC 5-methylaminomet 59.0 13 0.00033 17.9 3.5 16 51-66 2-17 (660)
318 PRK07894 consensus 59.0 14 0.00037 17.5 7.1 42 121-162 198-242 (430)
319 PRK07326 short chain dehydroge 58.6 13 0.00034 17.7 3.5 30 3-38 6-35 (235)
320 PRK06182 short chain dehydroge 58.0 13 0.00033 17.8 3.4 31 2-38 3-33 (273)
321 PTZ00301 uridine kinase; Provi 57.9 15 0.00038 17.4 5.4 52 4-58 5-58 (210)
322 PRK07024 short chain dehydroge 57.7 14 0.00036 17.5 3.5 32 1-38 1-32 (256)
323 cd06316 PBP1_ABC_sugar_binding 57.6 15 0.00039 17.3 6.8 40 346-388 186-225 (294)
324 cd01538 PBP1_ABC_xylose_bindin 57.2 15 0.00039 17.3 5.8 63 140-214 2-64 (288)
325 PRK12937 short chain dehydroge 57.0 15 0.00039 17.3 4.4 29 3-37 6-34 (245)
326 PRK05872 short chain dehydroge 56.8 14 0.00037 17.5 3.5 47 292-338 137-195 (296)
327 cd01574 PBP1_LacI Ligand-bindi 56.5 16 0.0004 17.2 5.6 189 140-374 2-196 (264)
328 KOG1907 consensus 56.5 5.6 0.00014 20.5 1.3 93 293-401 1060-1167(1320)
329 pfam01583 APS_kinase Adenylyls 56.4 16 0.0004 17.2 4.6 33 4-38 4-36 (157)
330 TIGR00105 L31 ribosomal protei 56.4 5.6 0.00014 20.4 1.3 31 485-516 22-53 (77)
331 PRK03806 murD UDP-N-acetylmura 56.3 16 0.0004 17.2 5.2 24 16-39 13-36 (438)
332 PRK12746 short chain dehydroge 56.3 14 0.00036 17.6 3.3 12 193-204 45-56 (254)
333 PRK08742 adenosylmethionine--8 56.2 16 0.00041 17.2 6.2 14 365-378 260-274 (472)
334 cd06335 PBP1_ABC_ligand_bindin 56.0 14 0.00035 17.7 3.2 80 292-380 139-224 (347)
335 pfam00899 ThiF ThiF family. Th 55.6 16 0.00041 17.1 5.8 65 311-380 57-121 (134)
336 PRK03515 ornithine carbamoyltr 55.1 17 0.00042 17.1 8.2 106 188-335 86-192 (334)
337 cd01540 PBP1_arabinose_binding 55.1 17 0.00042 17.1 6.4 12 193-204 44-55 (289)
338 cd01537 PBP1_Repressors_Sugar_ 55.0 17 0.00042 17.0 6.2 59 144-214 6-64 (264)
339 TIGR00147 TIGR00147 conserved 54.9 7.5 0.00019 19.5 1.7 97 306-407 22-119 (316)
340 PRK00421 murC UDP-N-acetylmura 54.8 17 0.00043 17.0 5.5 32 355-386 276-307 (459)
341 PRK06200 2,3-dihydroxy-2,3-dih 54.7 17 0.00043 17.0 3.5 30 3-38 7-36 (263)
342 TIGR02820 formald_GSH S-(hydro 54.6 6.8 0.00017 19.9 1.5 42 499-540 100-141 (182)
343 cd06282 PBP1_GntR_like_2 Ligan 54.5 17 0.00043 17.0 5.9 36 289-324 114-149 (266)
344 TIGR01591 Fdh-alpha formate de 54.4 2.5 6.4E-05 23.0 -0.7 113 355-480 123-247 (694)
345 PRK05541 adenylylsulfate kinas 54.3 17 0.00043 17.0 4.4 33 4-38 9-41 (176)
346 cd06307 PBP1_uncharacterized_s 54.3 17 0.00043 17.0 7.3 69 321-395 154-230 (275)
347 pfam00485 PRK Phosphoribulokin 54.3 14 0.00035 17.7 3.0 41 5-47 2-42 (196)
348 PRK06942 glutamate-1-semialdeh 54.2 17 0.00044 17.0 6.1 71 115-211 68-138 (425)
349 PRK06731 flhF flagellar biosyn 54.0 17 0.00044 16.9 5.6 22 187-208 6-27 (270)
350 COG0857 Pta BioD-like N-termin 53.9 17 0.00044 16.9 5.0 38 1-39 1-38 (354)
351 PTZ00287 6-phosphofructokinase 53.9 6 0.00015 20.2 1.1 215 222-458 822-1098(1439)
352 TIGR00670 asp_carb_tr aspartat 53.9 17 0.00044 16.9 5.5 106 202-336 98-213 (336)
353 KOG2968 consensus 53.8 11 0.00028 18.3 2.5 28 348-378 838-868 (1158)
354 COG0647 NagD Predicted sugar p 53.8 9.8 0.00025 18.7 2.2 154 215-401 51-207 (269)
355 PRK10653 D-ribose transporter 53.7 17 0.00044 16.9 6.5 22 140-161 29-50 (295)
356 KOG3974 consensus 53.2 17 0.00042 17.1 3.3 159 292-459 31-241 (306)
357 pfam00448 SRP54 SRP54-type pro 53.2 18 0.00045 16.9 4.2 38 5-44 4-41 (196)
358 cd06268 PBP1_ABC_transporter_L 53.1 18 0.00045 16.8 4.5 87 292-386 136-227 (298)
359 PRK08466 consensus 52.9 18 0.00045 16.8 8.4 40 115-164 64-103 (430)
360 cd06301 PBP1_rhizopine_binding 52.7 18 0.00046 16.8 7.5 13 192-204 70-82 (272)
361 PRK08220 2,3-dihydroxybenzoate 52.6 18 0.00046 16.8 3.7 31 3-39 9-39 (253)
362 PRK12389 glutamate-1-semialdeh 51.8 19 0.00047 16.7 4.3 68 116-209 72-139 (429)
363 COG0771 MurD UDP-N-acetylmuram 51.7 19 0.00047 16.7 4.2 35 9-43 7-41 (448)
364 cd06347 PBP1_ABC_ligand_bindin 51.2 17 0.00043 17.0 3.0 15 103-117 32-46 (334)
365 cd02023 UMPK Uridine monophosp 51.1 19 0.00048 16.6 4.6 37 5-45 2-38 (198)
366 PRK08116 hypothetical protein; 51.0 19 0.00049 16.6 3.8 39 292-335 109-147 (262)
367 COG0529 CysC Adenylylsulfate k 50.6 19 0.00049 16.6 4.5 34 4-39 25-58 (197)
368 cd06277 PBP1_LacI_like_1 Ligan 50.5 19 0.00049 16.6 5.0 89 279-375 107-200 (268)
369 PRK11840 bifunctional sulfur c 50.5 19 0.00049 16.6 4.1 71 298-373 92-162 (327)
370 PRK00889 adenylylsulfate kinas 50.3 19 0.0005 16.5 5.1 32 4-37 6-37 (175)
371 KOG1252 consensus 50.2 14 0.00035 17.6 2.5 13 191-203 138-150 (362)
372 PRK00771 signal recognition pa 49.8 20 0.00051 16.5 4.8 35 197-231 119-153 (433)
373 PRK08339 short chain dehydroge 49.7 20 0.00051 16.5 3.4 29 3-37 9-37 (263)
374 PRK01045 ispH 4-hydroxy-3-meth 49.6 20 0.00051 16.5 4.0 176 194-380 44-241 (304)
375 PRK12726 flagellar biosynthesi 49.5 20 0.00051 16.4 5.0 41 353-394 214-254 (407)
376 PRK04284 ornithine carbamoyltr 49.2 20 0.00052 16.4 8.4 111 183-335 81-191 (332)
377 COG4109 Predicted transcriptio 49.0 15 0.00038 17.3 2.5 16 274-289 208-223 (432)
378 cd03115 SRP The signal recogni 49.0 20 0.00052 16.4 4.2 33 12-44 8-40 (173)
379 cd06321 PBP1_ABC_sugar_binding 48.6 21 0.00053 16.4 7.0 63 140-213 2-65 (271)
380 PRK00141 murD UDP-N-acetylmura 48.2 21 0.00053 16.3 4.4 28 15-42 23-50 (476)
381 PRK12481 2-deoxy-D-gluconate 3 48.2 21 0.00053 16.3 3.5 28 3-36 9-36 (251)
382 PRK02705 murD UDP-N-acetylmura 48.1 21 0.00054 16.3 5.0 30 12-43 5-34 (459)
383 PRK06194 hypothetical protein; 48.1 21 0.00054 16.3 3.5 30 190-221 41-70 (301)
384 PRK06519 3-oxoacyl-(acyl carri 48.0 9.1 0.00023 18.9 1.3 52 3-71 6-58 (397)
385 KOG0389 consensus 47.9 21 0.00054 16.3 5.4 114 108-233 429-579 (941)
386 PRK09435 arginine/ornithine tr 47.8 21 0.00054 16.3 5.1 101 5-146 52-152 (325)
387 KOG4093 consensus 47.8 8.1 0.00021 19.3 1.0 31 369-403 110-140 (144)
388 COG0541 Ffh Signal recognition 47.7 21 0.00054 16.3 3.8 49 184-232 109-157 (451)
389 cd04743 NPD_PKS 2-Nitropropane 47.4 17 0.00043 17.0 2.6 67 112-185 104-173 (320)
390 PRK12409 D-amino acid dehydrog 47.2 22 0.00055 16.2 4.3 32 1-40 1-32 (410)
391 KOG1015 consensus 47.2 22 0.00055 16.2 4.4 103 107-219 706-835 (1567)
392 PRK03846 adenylylsulfate kinas 47.2 22 0.00055 16.2 4.6 33 4-38 26-58 (198)
393 PRK07523 gluconate 5-dehydroge 47.2 22 0.00055 16.2 3.5 29 3-37 10-38 (251)
394 PRK08226 short chain dehydroge 47.1 22 0.00055 16.2 3.5 22 291-312 136-160 (263)
395 cd04242 AAK_G5K_ProB AAK_G5K_P 47.0 14 0.00036 17.6 2.1 34 354-388 202-235 (251)
396 cd03129 GAT1_Peptidase_E_like 46.9 22 0.00056 16.2 8.4 110 273-388 13-127 (210)
397 cd06331 PBP1_AmiC_like Type I 46.8 21 0.00055 16.2 3.0 15 103-117 32-46 (333)
398 PRK08177 short chain dehydroge 46.7 22 0.00056 16.2 3.3 31 3-39 2-32 (225)
399 cd01492 Aos1_SUMO Ubiquitin ac 46.5 22 0.00057 16.1 5.1 52 321-378 87-138 (197)
400 PRK06179 short chain dehydroge 46.5 22 0.00057 16.1 3.5 30 3-38 5-34 (270)
401 PRK05444 1-deoxy-D-xylulose-5- 46.4 22 0.00057 16.1 5.1 28 188-216 209-236 (576)
402 PRK01438 murD UDP-N-acetylmura 46.2 22 0.00057 16.1 4.4 23 16-38 21-43 (481)
403 TIGR00345 arsA arsenite-activa 46.1 23 0.00057 16.1 3.9 50 13-80 6-57 (330)
404 cd06300 PBP1_ABC_sugar_binding 46.1 23 0.00057 16.1 7.9 18 194-213 51-68 (272)
405 cd07200 cPLA2_Grp-IVA Group IV 46.0 11 0.00028 18.4 1.4 22 361-382 365-386 (505)
406 pfam11308 DUF3111 Protein of u 45.9 1.3 3.4E-05 25.0 -3.3 74 274-362 25-99 (348)
407 pfam08497 Radical_SAM_N Radica 45.8 22 0.00056 16.2 2.9 21 195-215 5-26 (298)
408 PRK06057 short chain dehydroge 45.7 23 0.00058 16.0 3.6 30 3-38 8-37 (255)
409 pfam03308 ArgK ArgK protein. T 45.6 23 0.00058 16.0 5.3 104 5-149 32-135 (267)
410 PRK07030 adenosylmethionine--8 45.5 23 0.00059 16.0 7.3 13 148-160 88-100 (467)
411 PRK08703 short chain dehydroge 45.3 23 0.00059 16.0 3.5 11 193-203 44-54 (239)
412 cd06315 PBP1_ABC_sugar_binding 45.1 23 0.00059 16.0 4.8 69 307-381 15-87 (280)
413 PRK07774 short chain dehydroge 45.0 23 0.00059 16.0 3.6 29 3-37 7-35 (250)
414 TIGR03420 DnaA_homol_Hda DnaA 44.9 22 0.00057 16.1 2.9 45 149-203 22-66 (226)
415 pfam00202 Aminotran_3 Aminotra 44.6 24 0.0006 15.9 5.1 14 116-129 35-48 (338)
416 PRK09044 consensus 44.5 24 0.00061 15.9 6.9 40 115-164 60-99 (418)
417 cd03145 GAT1_cyanophycinase Ty 44.4 24 0.00061 15.9 7.5 110 273-388 13-130 (217)
418 PRK05642 DNA replication initi 44.2 16 0.0004 17.2 2.0 52 148-206 25-76 (234)
419 TIGR01735 FGAM_synt phosphorib 43.8 13 0.00033 17.8 1.5 294 229-536 1009-1397(1401)
420 PRK08862 short chain dehydroge 43.8 24 0.00062 15.9 3.5 11 201-211 79-89 (227)
421 PRK08267 short chain dehydroge 43.8 24 0.00062 15.8 3.5 33 2-40 1-33 (258)
422 COG2224 AceA Isocitrate lyase 43.5 13 0.00032 17.9 1.4 109 170-287 181-308 (433)
423 cd00363 PFK Phosphofructokinas 43.4 25 0.00063 15.8 3.7 13 5-17 5-17 (338)
424 PRK09072 short chain dehydroge 43.4 25 0.00063 15.8 3.5 31 3-39 6-36 (262)
425 TIGR01513 NAPRTase_put putativ 43.2 16 0.00041 17.1 1.9 69 257-337 216-293 (523)
426 PRK09242 tropinone reductase; 42.8 25 0.00064 15.8 3.5 29 3-37 11-39 (258)
427 PRK10936 periplasmic sensory p 42.8 25 0.00064 15.7 7.3 30 291-322 45-75 (340)
428 TIGR01287 nifH nitrogenase iro 42.7 25 0.00064 15.7 3.4 97 346-465 125-248 (278)
429 cd07202 cPLA2_Grp-IVC Group IV 42.6 12 0.00032 18.0 1.3 54 361-422 321-374 (430)
430 pfam10751 DUF2535 Protein of u 42.6 20 0.00052 16.4 2.4 49 492-540 9-67 (83)
431 KOG0610 consensus 42.3 4.3 0.00011 21.2 -1.1 40 473-516 359-401 (459)
432 cd04509 PBP1_ABC_transporter_G 42.2 26 0.00065 15.7 4.9 84 292-383 137-227 (299)
433 PRK12451 arginyl-tRNA syntheta 42.1 26 0.00065 15.7 10.0 187 19-268 137-352 (562)
434 cd05569 PTS_IIB_fructose PTS_I 42.1 26 0.00066 15.7 3.3 72 301-383 9-80 (96)
435 PRK06550 fabG 3-ketoacyl-(acyl 42.1 26 0.00066 15.7 3.7 32 1-38 4-35 (237)
436 cd06327 PBP1_SBP_like_1 Peripl 42.0 26 0.00066 15.7 4.8 73 292-375 136-214 (334)
437 PRK04690 murD UDP-N-acetylmura 42.0 26 0.00066 15.7 4.4 50 325-375 321-374 (468)
438 pfam00521 DNA_topoisoIV DNA gy 41.9 26 0.00066 15.6 4.4 71 278-373 19-95 (428)
439 PRK00726 murG N-acetylglucosam 41.7 26 0.00066 15.6 9.9 113 1-160 1-114 (359)
440 PRK08264 short chain dehydroge 41.7 26 0.00066 15.6 3.2 28 3-36 6-34 (235)
441 PRK08993 2-deoxy-D-gluconate 3 41.6 26 0.00067 15.6 3.5 29 3-37 11-39 (253)
442 KOG1154 consensus 41.5 12 0.0003 18.2 1.0 42 348-390 215-260 (285)
443 PRK12826 3-ketoacyl-(acyl-carr 41.4 26 0.00067 15.6 3.6 23 291-313 137-162 (253)
444 PRK06125 short chain dehydroge 41.3 26 0.00067 15.6 3.6 30 3-38 8-37 (259)
445 PRK08936 glucose-1-dehydrogena 41.2 27 0.00068 15.6 3.3 13 291-303 140-152 (261)
446 TIGR01082 murC UDP-N-acetylmur 41.1 19 0.00049 16.6 2.0 65 291-356 354-424 (491)
447 pfam06317 Arena_RNA_pol Arenav 41.1 13 0.00032 17.9 1.1 35 508-542 1365-1402(2206)
448 COG2022 ThiG Uncharacterized e 41.1 27 0.00068 15.6 4.7 73 297-374 23-95 (262)
449 cd02027 APSK Adenosine 5'-phos 41.0 27 0.00068 15.6 4.6 31 5-37 2-32 (149)
450 PRK06172 short chain dehydroge 40.3 27 0.0007 15.5 3.5 24 191-216 43-66 (253)
451 PRK06841 short chain dehydroge 40.3 27 0.0007 15.5 3.7 30 3-38 16-45 (255)
452 cd06289 PBP1_MalI_like Ligand- 40.2 27 0.0007 15.5 10.7 193 140-376 2-202 (268)
453 COG1856 Uncharacterized homolo 40.0 28 0.0007 15.5 5.9 61 113-178 35-98 (275)
454 cd06360 PBP1_alkylbenzenes_lik 40.0 28 0.0007 15.5 3.8 15 102-116 29-43 (336)
455 TIGR01964 chpXY CO2 hydration 39.8 20 0.00051 16.4 2.0 96 234-335 24-123 (421)
456 KOG1370 consensus 39.5 28 0.00072 15.4 3.4 69 141-212 53-132 (434)
457 PRK10014 DNA-binding transcrip 39.5 28 0.00072 15.4 6.7 47 289-336 180-226 (342)
458 PRK06173 adenosylmethionine--8 39.4 28 0.00072 15.4 7.6 102 48-201 24-126 (429)
459 cd01834 SGNH_hydrolase_like_2 39.3 28 0.00072 15.4 5.9 94 87-180 9-115 (191)
460 TIGR00937 2A51 chromate transp 39.3 18 0.00045 16.9 1.6 62 325-393 25-114 (390)
461 COG2087 CobU Adenosyl cobinami 39.1 15 0.00037 17.4 1.2 12 3-14 1-12 (175)
462 COG0540 PyrB Aspartate carbamo 38.9 29 0.00073 15.3 10.0 111 187-336 86-196 (316)
463 pfam00994 MoCF_biosynth Probab 38.9 29 0.00073 15.3 6.2 69 90-165 17-102 (140)
464 KOG0258 consensus 38.9 15 0.00039 17.3 1.3 144 107-267 105-280 (475)
465 PRK12939 short chain dehydroge 38.8 29 0.00073 15.3 4.6 21 192-214 44-64 (250)
466 cd06322 PBP1_ABC_sugar_binding 38.8 29 0.00073 15.3 4.9 61 140-212 2-62 (267)
467 cd03132 GATase1_catalase Type 38.8 29 0.00073 15.3 3.3 40 346-388 62-108 (142)
468 PRK01710 murD UDP-N-acetylmura 38.7 29 0.00074 15.3 4.3 26 15-40 20-45 (458)
469 cd00223 TOPRIM_TopoIIB_SPO TOP 38.7 20 0.0005 16.5 1.8 41 346-388 23-68 (160)
470 TIGR01383 not_thiJ DJ-1 family 38.5 16 0.00042 17.1 1.4 42 343-384 63-108 (186)
471 pfam05422 SIN1 Stress-activate 38.5 15 0.00038 17.3 1.2 15 496-510 414-428 (482)
472 COG0579 Predicted dehydrogenas 38.3 29 0.00075 15.3 3.0 28 15-42 9-38 (429)
473 TIGR01320 mal_quin_oxido malat 38.3 21 0.00052 16.4 1.8 16 15-30 6-21 (487)
474 PRK12314 gamma-glutamyl kinase 38.1 26 0.00067 15.6 2.4 36 354-390 213-248 (265)
475 COG0773 MurC UDP-N-acetylmuram 38.1 20 0.0005 16.5 1.7 125 17-211 16-141 (459)
476 cd02025 PanK Pantothenate kina 38.0 30 0.00075 15.2 4.8 39 5-45 2-42 (220)
477 COG1897 MetA Homoserine trans- 37.8 30 0.00076 15.2 5.4 136 344-521 97-240 (307)
478 PRK05876 short chain dehydroge 37.7 30 0.00076 15.2 3.5 31 190-222 41-71 (275)
479 TIGR00232 tktlase_bact transke 37.6 28 0.00072 15.4 2.5 76 312-397 373-452 (675)
480 PRK06398 aldose dehydrogenase; 37.5 30 0.00077 15.2 3.8 33 3-41 7-39 (256)
481 pfam01973 MAF_flag10 Protein o 37.4 30 0.00077 15.2 2.6 18 194-211 57-74 (169)
482 cd06318 PBP1_ABC_sugar_binding 37.3 30 0.00077 15.2 5.9 18 194-213 46-63 (282)
483 PRK07097 gluconate 5-dehydroge 37.2 30 0.00077 15.2 4.5 42 190-231 45-88 (265)
484 PRK08219 short chain dehydroge 37.1 17 0.00042 17.0 1.2 19 2-21 3-21 (226)
485 PRK07035 short chain dehydroge 37.1 31 0.00078 15.1 3.5 29 3-37 9-37 (252)
486 PRK04308 murD UDP-N-acetylmura 37.0 31 0.00078 15.1 4.7 24 17-40 13-36 (445)
487 PRK00779 ornithine carbamoyltr 37.0 31 0.00078 15.1 9.1 105 186-335 83-188 (308)
488 cd06295 PBP1_CelR Ligand bindi 36.8 31 0.00078 15.1 5.7 92 277-376 112-210 (275)
489 TIGR00825 EIIBC-GUT PTS system 36.8 12 0.0003 18.1 0.5 53 385-451 35-87 (334)
490 COG0520 csdA Selenocysteine ly 36.7 21 0.00054 16.3 1.7 65 216-285 66-135 (405)
491 PRK09135 pteridine reductase; 36.7 31 0.00079 15.1 3.3 29 3-37 7-35 (249)
492 KOG0612 consensus 36.7 4.9 0.00012 20.9 -1.6 13 246-258 242-254 (1317)
493 PRK10444 UMP phosphatase; Prov 36.4 23 0.0006 16.0 1.9 53 136-205 4-60 (248)
494 PRK08945 short chain dehydroge 36.4 31 0.0008 15.1 3.5 22 192-213 50-72 (245)
495 TIGR02129 hisA_euk phosphoribo 36.2 31 0.00079 15.1 2.5 46 213-269 172-217 (274)
496 PRK02264 N(5),N(10)-methenylte 35.9 32 0.00081 15.0 4.2 30 208-237 136-165 (318)
497 pfam02289 MCH Cyclohydrolase ( 35.9 32 0.00081 15.0 4.2 30 208-237 134-163 (312)
498 TIGR03120 one_C_mch methenylte 35.9 32 0.00081 15.0 4.2 30 208-237 134-163 (312)
499 PRK09417 mogA molybdenum cofac 35.9 32 0.00081 15.0 5.5 73 90-163 23-110 (192)
500 PRK07806 short chain dehydroge 35.8 32 0.00081 15.0 3.2 29 3-37 7-35 (248)
No 1
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=100.00 E-value=0 Score=2131.87 Aligned_cols=534 Identities=55% Similarity=0.947 Sum_probs=521.3
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 92399993750144444899999999999689828898544553348888886443507872798400255641133228
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG 80 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~ 80 (544)
|||||||||||||||||||+|||||+|||++||+||+||||||||+||||||||||||||||||||||||||||||||||
T Consensus 3 ~~KyifVTGGV~SslGKGI~AAS~grLL~~~gl~Vt~iKiDPYiN~DpGTMsP~qHGEVFVt~DG~EtDLDLGHYERFl~ 82 (571)
T TIGR00337 3 MMKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLD 82 (571)
T ss_pred CCEEEEEECCEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCCCHHHCC
T ss_conf 61179994438504026789999999998558806576307755668763778635427880688764366654212227
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCC--------CCCEEEEECCCCCCCCCCCHH
Q ss_conf 747754680125899999988857775774025646024898999970788--------987899972431222123068
Q gi|254780195|r 81 ISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE--------DADFVICEIGGTIGDIEVMPF 152 (544)
Q Consensus 81 ~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~--------~~Dv~ivEiGGTVGDIEs~pF 152 (544)
.+|+|+|||||||||++||+|||||||||+|||||||||||||+||.++++ ++||||||||||||||||+||
T Consensus 83 ~~l~~~~NiTTGkIY~~Vi~kERkGdYLG~TVQiIPHiTnEIK~~I~~~A~~P~eDtG~~~Dv~IvEiGGTVGDIEs~PF 162 (571)
T TIGR00337 83 TNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAKKPVEDTGSGADVVIVEIGGTVGDIESLPF 162 (571)
T ss_pred CCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHH
T ss_conf 66774566100668998841037712148827984255467899999960377645679974799983770000036258
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999999874977685799997467542256620034789999999974998768999238758999999998641988
Q gi|254780195|r 153 VEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVP 232 (544)
Q Consensus 153 lEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~ 232 (544)
|||||||+.|+|+ +|++|||||||||+.++|||||||||||||||||+|||||||+|||+++|++++|+||||||||+
T Consensus 163 LEAiRQ~~~e~G~--Env~~iHvTLVP~i~aagE~KTKPTQhSVKeLRs~Gi~PD~i~cRs~~~l~~~~k~KiAlFCdV~ 240 (571)
T TIGR00337 163 LEAIRQLKKEVGR--ENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSLGIQPDIIICRSSEPLDKSLKKKIALFCDVE 240 (571)
T ss_pred HHHHHHHHHHHCC--CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999987389--86799984002631448747877512789999860988868998188768977764521005889
Q ss_pred HHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC---------CCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCC
Q ss_conf 677240389862026689887649488999983878888---------62047899999874184343799995200148
Q gi|254780195|r 233 MSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVS---------LPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHL 303 (544)
Q Consensus 233 ~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~---------~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l 303 (544)
.++||++.|++|||+|||+|.+|||+++|++||+|...+ .++|+.|+.++++..+|+++|+|||||||++|
T Consensus 241 ~~aVI~~~Da~sIY~vPl~L~~egl~~~~~~rl~L~~~~~~ee~k~rG~~~Ls~W~~~v~~~~~~~~~v~Ig~VGKY~eL 320 (571)
T TIGR00337 241 EEAVINAEDASSIYEVPLLLKKEGLDDYLCRRLNLNEKPLIEEEKERGEADLSEWEELVEKLINPKEEVTIGLVGKYVEL 320 (571)
T ss_pred CCCEEEEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCH
T ss_conf 73257865552401135210004335799998437877742012213755489999999863055251679897400251
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH----HHHHCC------CCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 1346888888888878736724167722565672344----566216------983997377786550168889988740
Q gi|254780195|r 304 KDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDP----VKHFYG------VHGILVPGGFGKRGSEGKIAAIKFARE 373 (544)
Q Consensus 304 ~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~----~~~L~~------~dGIlVPGGFG~RGieGkI~Ai~yARe 373 (544)
+|||+||.|||+|||++++++|+|+||||+++|.++. .+.|++ +||||||||||.||+||||.||+||||
T Consensus 321 ~DaY~Sv~EAL~Hag~~~d~~v~i~Wi~s~d~e~~~~e~~k~~~l~~~~~~~~~DGILVPGGFG~RG~EGKI~Ai~yARE 400 (571)
T TIGR00337 321 KDAYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEEQEVDKAELLDGWNELSEVDGILVPGGFGERGVEGKIRAIKYARE 400 (571)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 35678899999876776374256898621013200120013555322445430680683688897660247899999876
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCC---CEECCCHHCC-CCCCCCCCCCCCCCCEEEECCEEEE
Q ss_conf 47632235576999999998751688999700035-66664---1211501123-4653001565546740231652578
Q gi|254780195|r 374 NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFS-EAGVP---VIALMSEWMK-GDQQEKRLPSDDLGATMRLGAYDVS 448 (544)
Q Consensus 374 n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~-~~~~p---vI~~l~e~~~-~~~~~~~~~~~~~GGTMRLG~~~~~ 448 (544)
|+|||||||||||+|+|||||||+|+++||||||+ +|++| ||++||||.. ..+.+.|...++||||||||+|+|.
T Consensus 401 N~iPFLGICLGmQ~A~IEFARNV~Gl~~AnStEf~~~t~~p~~~Vv~LlpEq~d~~~~~~VRt~~~~lGGTMRLG~ypc~ 480 (571)
T TIGR00337 401 NNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPKSPVVDLLPEQKDQNGNKEVRTEIEDLGGTMRLGLYPCI 480 (571)
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCCCEECCEEECCCCCEEECCCCCEE
T ss_conf 36973302177788899997653479888741246455777331114253222446760013010138724305872217
Q ss_pred ECCC---CHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf 5587---0668863798476602523332788998999789599998699986899983899849997248773278769
Q gi|254780195|r 449 LKEE---TLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLD 525 (544)
Q Consensus 449 l~~~---S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~ 525 (544)
|++| |+|+++||++.|.|||||||||||+|+++||++||+|||+|+|+.|+|+||+++|||||||||||||+|||.+
T Consensus 481 l~~~~eWt~a~klYg~~~v~ERHRHRYE~Nn~~~~~~E~~GL~vsG~S~dg~l~EiiE~~~HP~FvA~QFHPEF~Srp~~ 560 (571)
T TIGR00337 481 LKPGSEWTLAFKLYGKEEVYERHRHRYEVNNEYREELENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNR 560 (571)
T ss_pred ECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
T ss_conf 71787232675533786788712444122757898998579589998699838999984797868886226751167788
Q ss_pred CCHHHHHHHHH
Q ss_conf 88415899999
Q gi|254780195|r 526 PHPLFVSFIQA 536 (544)
Q Consensus 526 phPLF~~fi~A 536 (544)
|||||.+||+|
T Consensus 561 p~plF~Gfv~A 571 (571)
T TIGR00337 561 PHPLFLGFVKA 571 (571)
T ss_pred CCCCCHHHHCC
T ss_conf 88750553249
No 2
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=0 Score=1968.12 Aligned_cols=531 Identities=61% Similarity=1.036 Sum_probs=521.9
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 92399993750144444899999999999689828898544553348888886443507872798400255641133228
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG 80 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~ 80 (544)
|||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||
T Consensus 1 ~tKyIfVTGGVvS~lGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GTMsP~qHGEVfVt~DG~EtDLDLGhYERFl~ 80 (534)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGALLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLD 80 (534)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
T ss_conf 96099996983015740899999999999789658898414652258998896657537888887401466751354348
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 74775468012589999998885777577402564602489899997078898789997243122212306899999999
Q gi|254780195|r 81 ISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 81 ~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (544)
++|+++||+||||||++||+|||+|+|||+|||||||||||||+||+++++++||||||||||||||||+|||||+|||+
T Consensus 81 ~~l~~~~niTtGkiy~~Vi~kER~G~YLG~TVQvIPHiTdeIk~~i~~~a~~~Dv~ivEiGGTVGDIEs~pFlEAiRQ~~ 160 (534)
T PRK05380 81 TNLSKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILRAAEGADVVIVEIGGTVGDIESLPFLEAIRQLR 160 (534)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEHHCCCHHHHHHHHHH
T ss_conf 88766666033398999988874578688734778886689999999727788889997576210110268999999998
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
Q ss_conf 87497768579999746754225662003478999999997499876899923875899999999864198867724038
Q gi|254780195|r 161 NEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240 (544)
Q Consensus 161 ~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~ 240 (544)
+++|+ +|+|||||||||||+++||+||||||||||+||++|||||||+|||++||++++|+|||+||||+.++||+++
T Consensus 161 ~e~g~--~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~GIqPDilvcRse~~l~~~~k~KIalfcnV~~~~VI~~~ 238 (534)
T PRK05380 161 LELGR--ENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEAVISAP 238 (534)
T ss_pred HHHCC--CCEEEEEEECCCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
T ss_conf 76087--8789999731310147875467731888999996589987478625776898999988641588789968626
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98620266898876494889999838788886204789999987418434379999520014813468888888888787
Q gi|254780195|r 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVS 320 (544)
Q Consensus 241 Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~ 320 (544)
|++|||+|||+|++||+++.|+++|+|+. ++|||++|++|++++.+|+++|+|||||||++|+|||+||.|||.|||++
T Consensus 239 Dv~sIYeVPl~l~~qgl~~~I~~~L~L~~-~~~~l~~W~~~v~~~~~~~~~V~IaiVGKYv~L~DaY~Sv~EAL~Hag~~ 317 (534)
T PRK05380 239 DVDSIYEVPLLLHEQGLDDIVLKRLGLEA-PEPDLSEWEDLVERIKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIA 317 (534)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 85237776899998583899999867898-99789999999998758765569998631367860499999999988886
Q ss_pred HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 36724167722565672344566216983997377786550168889988740476322355769999999987516889
Q gi|254780195|r 321 NYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIP 400 (544)
Q Consensus 321 ~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~ 400 (544)
++++|+|+|||||++|+++.++.|+++||||||||||.||+||||.||+|||||||||||||||||+||||||||||||+
T Consensus 318 ~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGiEGKI~Ai~yARen~IPfLGICLGMQ~avIEfARNVlgl~ 397 (534)
T PRK05380 318 NDVKVNIKWIDSEDLEEENVAELLKDVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLE 397 (534)
T ss_pred CCCCCEEEEEEHHHCCCCCHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCC
T ss_conf 38742279988576366467777631882995787665431568999999998199811011223788999999845899
Q ss_pred CCCHHHCC-CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC-CCEEEEECCCCCCCCHHH
Q ss_conf 99700035-6666412115011234653001565546740231652578558706688637-984766025233327889
Q gi|254780195|r 401 NACSTEFS-EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG-LDLIPERHRHRYEVNVRY 478 (544)
Q Consensus 401 dAnStEf~-~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg-~~~I~ERHRHRYEvN~~y 478 (544)
|||||||+ +|++|||++||||.. .++||||||||+|+|.|++||+++++|| ++.|+|||||||||||+|
T Consensus 398 dAnStEfd~~t~~pVI~lm~eq~~---------~~~~GGTMRLG~y~~~l~~gS~a~~~Yg~~~~I~ERHRHRYEvN~~y 468 (534)
T PRK05380 398 DANSTEFDPDTPHPVIDLMPEQKD---------VSDLGGTMRLGAYPCKLKPGTLAAEIYGKTEVIYERHRHRYEVNNKY 468 (534)
T ss_pred CCCEEECCCCCCCCEEEECHHHCC---------CCCCCCEEECCCEEEEECCCCHHHHHHCCCCEECCCCCCCCCCCHHH
T ss_conf 973253589999986998823137---------76566604516445675688899998589981666456420018999
Q ss_pred HHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 98999789599998699986899983899849997248773278769884158999999987644
Q gi|254780195|r 479 REKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQS 543 (544)
Q Consensus 479 ~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~~ 543 (544)
+++|+++||+|||+|+|+++||++|+++|||||||||||||+|||.+|||||.+||+||+++++.
T Consensus 469 ~~~le~~Gl~~sG~s~d~~lvEiiEl~~HpfFvg~QfHPEfkSrP~~PhPlF~~fI~Aal~~~~~ 533 (534)
T PRK05380 469 REQLEKAGLVFSGTSPDGRLVEIIELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALEYKKR 533 (534)
T ss_pred HHHHHHCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999789799999899987899986899808996577665789999983699999999987524
No 3
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=1854.03 Aligned_cols=530 Identities=59% Similarity=1.005 Sum_probs=516.1
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCC
Q ss_conf 23999937501444448999999999996898288985445533488888864435078727984002556411332287
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGI 81 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~ 81 (544)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CEEEEEECCEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCC
T ss_conf 90899918850366427999999999997797478983266400388878856574289888875025666414654478
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 477546801258999999888577757740256460248989999707889-8789997243122212306899999999
Q gi|254780195|r 82 STAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNED-ADFVICEIGGTIGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 82 ~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~-~Dv~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (544)
+|++.||+||||||++||+|||+|||||+|||||||||||||+||+++++. +||+|||||||||||||+||+||+|||+
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~~~~DvvivEIGGTVGDIEslpFlEAiRQ~~ 160 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAADSTADVVIVEIGGTVGDIESLPFLEAIRQLR 160 (533)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCEECCCCCHHHHHHHHHH
T ss_conf 76666784333889999877744775685468878762689999998257888889998177122223367899999987
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
Q ss_conf 87497768579999746754225662003478999999997499876899923875899999999864198867724038
Q gi|254780195|r 161 NEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240 (544)
Q Consensus 161 ~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~ 240 (544)
.++|+ +|++|||||||||+.++||+||||||||||+||++|||||+|+|||++|++++.|+|||+||||+.++||+++
T Consensus 161 ~e~g~--~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~Vi~~~ 238 (533)
T COG0504 161 LELGR--ENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEAVISAP 238 (533)
T ss_pred HHHCC--CCEEEEEEECCEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
T ss_conf 67362--5689999733203615675578884277899996589966599945887998999999986389888857346
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98620266898876494889999838788886204789999987418434379999520014813468888888888787
Q gi|254780195|r 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVS 320 (544)
Q Consensus 241 Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~ 320 (544)
|++|||+||+.|++||+++.|+++|+|+ .+.+||++|+++++++.+++++|+|||||||++|+|||+||.|||+|||++
T Consensus 239 Dv~siY~vPl~l~~qgl~~~i~~~l~l~-~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~ 317 (533)
T COG0504 239 DVESIYEVPLLLEKQGLDDYILERLNLN-APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEALKHAGIA 317 (533)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCC-CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6788877189998753278999985899-887556779999998528777269999876758606799999999950764
Q ss_pred HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 36724167722565672344566216983997377786550168889988740476322355769999999987516889
Q gi|254780195|r 321 NYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIP 400 (544)
Q Consensus 321 ~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~ 400 (544)
++++++|+|||||++|+++.......+||||||||||.||+||||.||+|||||+|||||||||||+|+|||||||+|++
T Consensus 318 ~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~ 397 (533)
T COG0504 318 LGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLE 397 (533)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCC
T ss_conf 19840269875123665444556631887996898776755889999999986699868885667899999999851976
Q ss_pred CCCHHHCC-CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHH
Q ss_conf 99700035-66664121150112346530015655467402316525785587066886379847660252333278899
Q gi|254780195|r 401 NACSTEFS-EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYR 479 (544)
Q Consensus 401 dAnStEf~-~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~ 479 (544)
+|||+||| ++++|||++||||.. ..+||||||||+|+|.|++||+++++||++.|.|||||||||||+|+
T Consensus 398 ~AnS~Efdp~t~~pVv~l~~eq~~---------~~~lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~ 468 (533)
T COG0504 398 GANSTEFDPDTKYPVVDLMPEQKD---------VVDLGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYR 468 (533)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCC---------CCCCCCEEECCCEEEECCCCCHHHHHHCCCCEEEECCCHHHCCHHHH
T ss_conf 576435488999865883354236---------77677500416610112788689987387714002153133088999
Q ss_pred HHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8999789599998699986899983899849997248773278769884158999999987644
Q gi|254780195|r 480 EKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQS 543 (544)
Q Consensus 480 ~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~~ 543 (544)
++||++||+|||+|+|+.+||++|+++||||+||||||||+|||.+|||||.+||+||++++++
T Consensus 469 ~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~~ 532 (533)
T COG0504 469 DQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKKD 532 (533)
T ss_pred HHHHHCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9998689699998689986899983899648987466313478999983479999999975317
No 4
>KOG2387 consensus
Probab=100.00 E-value=0 Score=1661.12 Aligned_cols=528 Identities=47% Similarity=0.857 Sum_probs=511.1
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCC
Q ss_conf 23999937501444448999999999996898288985445533488888864435078727984002556411332287
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGI 81 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~ 81 (544)
||||+|||||+||+||||+|||+|.|||++|++||.||||||||+|||||||||||||||+|||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CEEEEEECCEEECCCCCEEEHHHHHHHHHCCCEEEEEEECCCEECCCCCCCCCCCCEEEEECCCCEECCCCCCHHHHCCC
T ss_conf 90899947676145674231237799985693468987355401267655755464499966896004556446654263
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCC--------CCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 4775468012589999998885777577402564602489899997078--------89878999724312221230689
Q gi|254780195|r 82 STAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGN--------EDADFVICEIGGTIGDIEVMPFV 153 (544)
Q Consensus 82 ~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~--------~~~Dv~ivEiGGTVGDIEs~pFl 153 (544)
+||++|||||||||++||+|||+||||||||||||||||+|++||++++ ..|||||||+||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEECCCCCCHHH
T ss_conf 44236874521689998756523653265368553346899999999744886788999988999868520331346799
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99999998749776857999974675422566200347899999999749987689992387589999999986419886
Q gi|254780195|r 154 EAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPM 233 (544)
Q Consensus 154 EAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~ 233 (544)
||+|||++.+|+ +|+|+|||||||.+++.|||||||||||||+||++|+.||+|+|||.+||..++|+|||+||+|++
T Consensus 161 eAl~qFq~~vg~--~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~ 238 (585)
T KOG2387 161 EALRQFQFKVGR--ENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGP 238 (585)
T ss_pred HHHHHHEECCCC--CCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCH
T ss_conf 999862021257--747999998887214665666761577788887468986557881688777779998866135478
Q ss_pred HHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHH
Q ss_conf 772403898620266898876494889999838788886--204789999987418434379999520014813468888
Q gi|254780195|r 234 SAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSL--PQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLI 311 (544)
Q Consensus 234 ~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~--~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~ 311 (544)
++|+..+||+|||+|||+|++|++.+++.++|+|..... +.|+.|+.+.++.+...+.|+||+||||+.+.|||+||+
T Consensus 239 eqV~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~ 318 (585)
T KOG2387 239 EQVVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVV 318 (585)
T ss_pred HHEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99555226761101127776634999999984877221332569999999875534467179999851456117799999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCC----------CHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 888888787367241677225656723----------4456621698399737778655016888998874047632235
Q gi|254780195|r 312 EALRHSGVSNYTKVQLSWIDAETLEKE----------DPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 312 EAL~hA~~~~~~kv~i~wIdse~le~~----------~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGI 381 (544)
+||.||+++++.|++|.||+|++||+. .+|+.|+++||||||||||.||+||||+||+|||||++|||||
T Consensus 319 KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGi 398 (585)
T KOG2387 319 KALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGI 398 (585)
T ss_pred HHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99987788736661499975101565434457267899998752488289678665443057899999987649975763
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEEC-CCCHHHHHH
Q ss_conf 576999999998751688999700035-666641211501123465300156554674023165257855-870668863
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIPNACSTEFS-EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLK-EETLISRIY 459 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~dAnStEf~-~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~-~~S~~~~iY 459 (544)
|||||+|||||||||||++|||||||+ ++++|++.+|||.. ..+||||||||.+++.+. ..|+++++|
T Consensus 399 CLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~----------~~~mGgtMRLG~R~t~f~~~~s~~~kLY 468 (585)
T KOG2387 399 CLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHN----------KTHMGGTMRLGSRRTVFQDKDSKLRKLY 468 (585)
T ss_pred EHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCC----------CCCCCCEEEECCCCEEEECCCHHHHHHH
T ss_conf 111269999999986177778732248788986799876887----------4444644662464116505715789875
Q ss_pred C-CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7-984766025233327889989997895999986999868999838998499972487732787698841589999999
Q gi|254780195|r 460 G-LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATV 538 (544)
Q Consensus 460 g-~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal 538 (544)
| .+.+.|||||||||||+++++||++||+|+|+|.+|.++||+|+++||||||+||||||+|||.+|||+|.+++.|+.
T Consensus 469 G~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~ 548 (585)
T KOG2387 469 GNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASC 548 (585)
T ss_pred CCCHHHHHHHHCCEECCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCEEEECCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79504656541101148899999986696898516888578899807987256531377774589999965267678777
Q ss_pred HHH
Q ss_conf 876
Q gi|254780195|r 539 LYS 541 (544)
Q Consensus 539 ~~~ 541 (544)
..-
T Consensus 549 ~~l 551 (585)
T KOG2387 549 GRL 551 (585)
T ss_pred HHH
T ss_conf 668
No 5
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=100.00 E-value=0 Score=1048.35 Aligned_cols=274 Identities=60% Similarity=1.055 Sum_probs=268.9
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCC
Q ss_conf 23999937501444448999999999996898288985445533488888864435078727984002556411332287
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGI 81 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~ 81 (544)
||||||||||+|||||||+|||||+|||++||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tkyi~vtGGV~SglGKGi~~aSig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P~eHGEVfV~~DG~EtDlDlG~YERFl~~ 80 (275)
T pfam06418 1 TKYIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI 80 (275)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCC
T ss_conf 93999959850256318999999999996796367874156312388877833156078737874014767523431477
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4775468012589999998885777577402564602489899997078-898789997243122212306899999999
Q gi|254780195|r 82 STAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGN-EDADFVICEIGGTIGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 82 ~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~-~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (544)
+|+++||+||||||++||+|||+|+|||||||||||||||||+||++++ +++||||||||||||||||+||+||+|||+
T Consensus 81 ~l~~~~niTtGkiy~~Vi~kER~G~YLGkTVQvIPHiTdeIk~~I~~~a~~~~Di~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (275)
T pfam06418 81 NLTKDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAAKGADVVIVEIGGTVGDIESLPFLEAIRQFR 160 (275)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCHHHHHHHHHH
T ss_conf 75666663401889999988755675897158778856999999998556789789997576010010228999999998
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
Q ss_conf 87497768579999746754225662003478999999997499876899923875899999999864198867724038
Q gi|254780195|r 161 NEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240 (544)
Q Consensus 161 ~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~ 240 (544)
+++|+ +|+||||||||||+.++||+||||||||||+|||+|||||||+|||++||++++|+|||+||||++++||+++
T Consensus 161 ~~~g~--~n~~fiHvtlvP~l~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslfcnV~~~~VI~~~ 238 (275)
T pfam06418 161 LEVGR--ENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEAVISAP 238 (275)
T ss_pred HHHCC--CCEEEEEEEECCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEEC
T ss_conf 87287--7569999873244368875456732888999996489987588706789999999999876399866789846
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 98620266898876494889999838788886204789
Q gi|254780195|r 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNW 278 (544)
Q Consensus 241 Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W 278 (544)
|++|||+||++|++||+++.|+++|+|+. ++|||++|
T Consensus 239 Dv~sIY~VPl~l~~qgl~~~I~~~L~L~~-~~pdl~~W 275 (275)
T pfam06418 239 DVESIYEVPLLLEKQGLDELILEKLGLDP-KEPDLSKW 275 (275)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHCCCCC-CCCCCCCC
T ss_conf 84428898999998784699999759898-89997889
No 6
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=0 Score=994.62 Aligned_cols=253 Identities=64% Similarity=1.071 Sum_probs=249.8
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 39999375014444489999999999968982889854455334888888644350787279840025564113322874
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
|||||||||+|||||||+|||||+|||++||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 Kyi~VtGGV~SglGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtM~P~eHGEVfV~~DG~EtDlDlG~YERFl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf 98999488201573089999999999978975889842565013899888454761778788761046664145435787
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7754680125899999988857775774025646024898999970788--98789997243122212306899999999
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE--DADFVICEIGGTIGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~--~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (544)
|+++||+||||||++||+|||+|+|||||||||||||||||+||+++++ ++||||||||||||||||+||+||+|||+
T Consensus 81 lt~~~niTtGkiy~~VI~kER~G~YLGkTVQvIPHvTdeIk~~I~~~a~~~~~Di~ivEiGGTVGDiEs~pFlEAiRQl~ 160 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMK 160 (255)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCHHHHHHHHHHHH
T ss_conf 77767750528899998776446768970688787369999999986046899789997686352242207999999998
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
Q ss_conf 87497768579999746754225662003478999999997499876899923875899999999864198867724038
Q gi|254780195|r 161 NEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240 (544)
Q Consensus 161 ~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~ 240 (544)
+++|+ +|+||||||||||++++||+||||||||||+||++|||||+|+|||++||++++|+|||+||||++++||+++
T Consensus 161 ~e~g~--~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lr~~GI~PDiivcRse~~l~~~~k~KIa~fc~V~~~~Vi~~~ 238 (255)
T cd03113 161 LELGR--ENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAVISAP 238 (255)
T ss_pred HHCCC--CCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
T ss_conf 64398--7579998763002278764346642899999997589988799805786997899999985499878879867
Q ss_pred CCCCHHHHHHHHHHCCH
Q ss_conf 98620266898876494
Q gi|254780195|r 241 DVDDIYKVPLSYHREGI 257 (544)
Q Consensus 241 Dv~sIY~VPl~l~~q~l 257 (544)
|++|||+||++|++|||
T Consensus 239 dv~sIY~vPl~l~~qgL 255 (255)
T cd03113 239 DVDNIYEVPLLLEQQGL 255 (255)
T ss_pred CCCCHHHHHHHHHHCCC
T ss_conf 85608999999997759
No 7
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=0 Score=753.88 Aligned_cols=234 Identities=59% Similarity=1.008 Sum_probs=228.3
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 79999520014813468888888888787367241677225656723445662169839973777865501688899887
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFA 371 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yA 371 (544)
|+|||||||+++.|||+||+|||.|||++++++++|+||||+++|+++.++.|+++||||||||||.||+||||.||+||
T Consensus 1 v~IalVGKY~~~~DaY~Si~eAL~ha~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dgilvpgGFG~rG~eGki~Ai~yA 80 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRGVEGKILAIKYA 80 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 97999967669833799899999998997499058999855654766889997306978957888877645889999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEEC
Q ss_conf 4047632235576999999998751688999700035-666641211501123465300156554674023165257855
Q gi|254780195|r 372 RENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFS-EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLK 450 (544)
Q Consensus 372 Ren~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~-~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~ 450 (544)
|||||||||||||||+|||||||||||++||||+||+ ++++|||.+|++|.. ..++|||||||+|+|.++
T Consensus 81 Ren~iPfLGIClGmQ~aviE~ARnvlg~~~A~s~E~~~~~~~~vi~~~~~~~~---------~~~~GgTmRLG~~~~~l~ 151 (235)
T cd01746 81 RENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKG---------VKDLGGTMRLGAYPVILK 151 (235)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECHHHCC---------CHHCCCCEEEEEEEEEEC
T ss_conf 97399725441034322689998752997767422479999877996756616---------400134134202577622
Q ss_pred CCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHH
Q ss_conf 87066886379847660252333278899899978959999869998689998389984999724877327876988415
Q gi|254780195|r 451 EETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLF 530 (544)
Q Consensus 451 ~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF 530 (544)
+||+++++||+++|+|||||||||||+|++.|+++||+|||+|+|+++||++|+++|||||||||||||+|||.+|||||
T Consensus 152 ~~s~~~~~y~~~~i~ERHRHRYevN~~y~~~le~~Gl~~sG~~~~~~~veiiEl~~Hpffvg~QfHPEf~Srp~~phPlF 231 (235)
T cd01746 152 PGTLAHKYYGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLF 231 (235)
T ss_pred CCHHHHHHCCCCEEEEEECCCEEECHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCH
T ss_conf 43066675188323123023556789999999868968999989999799998689984788757764468999999383
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780195|r 531 VSFI 534 (544)
Q Consensus 531 ~~fi 534 (544)
.+||
T Consensus 232 ~~fi 235 (235)
T cd01746 232 VGFV 235 (235)
T ss_pred HHHC
T ss_conf 6439
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=726.59 Aligned_cols=227 Identities=32% Similarity=0.507 Sum_probs=219.4
Q ss_pred CEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 37999952001481346888888888878736724167722565672344566216983997377786550168889988
Q gi|254780195|r 291 EVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKF 370 (544)
Q Consensus 291 ~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~y 370 (544)
+|+|||||||++++|||+||+|||.|||++++++|+|.||+||+++++ +.|+++||||||||||.||+||||.||+|
T Consensus 1 tv~IaiVGKY~~l~DaY~Sv~eAL~ha~~~~~~~v~i~wI~se~~~~~---~~L~~~dgilv~pGfG~RG~eGki~Ai~y 77 (229)
T PRK06186 1 TLRIALVGDYNPDITAHQAIPLALDLAAEVLGLPVDYEWLPTDDIHDP---EDLAGFDGIWCVPGSPYRNEDGALTAIRF 77 (229)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 929999989779840898699999987997099068999720116771---02225998998998777656389999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEE
Q ss_conf 74047632235576999999998751688999700035-66664121150112346530015655467402316525785
Q gi|254780195|r 371 ARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFS-EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSL 449 (544)
Q Consensus 371 ARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~-~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l 449 (544)
||||||||||||||||+||||||||||||+||||+||| ++++|||..| ++|||+|.++|.+
T Consensus 78 ARen~iP~LGICLGmQ~avIEfARnvlgl~dAnS~Efd~~~~~pvi~~l------------------~~~~~~~~~~~~l 139 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYARNVLGWADAEHAETDPEASRPVIAPL------------------SCSLVEATAAIRL 139 (229)
T ss_pred HHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECC------------------CCCHHCCCCCEEE
T ss_conf 9876998786427789999999998659988876455789997189368------------------8732038751574
Q ss_pred CCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHH
Q ss_conf 58706688637984766025233327889989997895999986999868999838998499972487732787698841
Q gi|254780195|r 450 KEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPL 529 (544)
Q Consensus 450 ~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPL 529 (544)
++||+++++||++.|+|||||||||||+|+++|+++||+|||+|+++. ||++|+++||||+||||||||+|||.+||||
T Consensus 140 ~~~s~~~~iYg~~~i~ERHRHRYEvN~~y~~~le~~Gl~~sG~~~~~~-veiiEl~~Hpffvg~QfHPEf~Srp~~phPl 218 (229)
T PRK06186 140 RPGSLIARAYGTDEIEEGYHCRYGVNPEFAAALESGALRVSGWDEEGD-VRAVELPGHPFFVATLFQPERAALAGRLPPL 218 (229)
T ss_pred CCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCC-EEEEEECCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 899839998696530133234554698999999978989999889998-8999928998589965875456899998815
Q ss_pred HHHHHHHHHH
Q ss_conf 5899999998
Q gi|254780195|r 530 FVSFIQATVL 539 (544)
Q Consensus 530 F~~fi~Aal~ 539 (544)
|.+||+||+.
T Consensus 219 F~~Fi~AA~a 228 (229)
T PRK06186 219 VRAFLRACSA 228 (229)
T ss_pred HHHHHHHHHC
T ss_conf 9999999852
No 9
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.96 E-value=1.2e-27 Score=219.89 Aligned_cols=177 Identities=28% Similarity=0.350 Sum_probs=126.5
Q ss_pred CCHHHHHCCCCEEEECCC--------CCCCCCH---------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 344566216983997377--------7865501---------68889988740476322355769999999987516889
Q gi|254780195|r 338 EDPVKHFYGVHGILVPGG--------FGKRGSE---------GKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIP 400 (544)
Q Consensus 338 ~~~~~~L~~~dGIlVPGG--------FG~RGie---------GkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~ 400 (544)
+.....|..+||++++|| ||..+-+ --+..+++|.++++|.||||+|||++ ||+
T Consensus 53 ~~~~~~l~~lDGllltGG~~Di~P~~Yge~~~~~~~dp~RD~~E~~L~~~A~~~~~PiLGICRG~Q~l------NVa--- 123 (254)
T PRK11366 53 SLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQEL------VVA--- 123 (254)
T ss_pred HHHHHHHHHCCEEEECCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHH------HHH---
T ss_conf 89999998789899689989889423688988888884212999999999998599979860355899------987---
Q ss_pred CCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH-CCCEEEEECCCCCCCCHHHH
Q ss_conf 99700035666641211501123465300156554674023165257855870668863-79847660252333278899
Q gi|254780195|r 401 NACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY-GLDLIPERHRHRYEVNVRYR 479 (544)
Q Consensus 401 dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY-g~~~I~ERHRHRYEvN~~y~ 479 (544)
|..|-++-|...|+........ .... ...-.-++.+.++++|++++++ ++..+. ||+-++
T Consensus 124 ------~GGtL~qdl~~~~~~~~H~~~~-~~~~----~~~~~~~H~V~i~~~s~L~~i~~~~~~~~--------VNS~Hh 184 (254)
T PRK11366 124 ------TGGSLHRKLCEQPELLEHREDP-ELPV----EQQYAPSHEVQVEEGGLLSALLPECSNFW--------VNSLHG 184 (254)
T ss_pred ------HCCEEEEECCCCCCCCCCCCCC-CCCC----CCCCCCCCEEEECCCCCHHHHHCCCCCEE--------EECHHH
T ss_conf ------3886442200376523445688-8985----43325641189868986999748987058--------742135
Q ss_pred HHHHH--CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHHC
Q ss_conf 89997--8959999869998689998389984999724877327876988-4158999999987644
Q gi|254780195|r 480 EKLEG--CGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPH-PLFVSFIQATVLYSQS 543 (544)
Q Consensus 480 ~~le~--~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~ph-PLF~~fi~Aal~~~~~ 543 (544)
+.+.+ .||+++|+++|| ++|++|.+++||++||||||||.+.....+ .||.+|+.||.+|..+
T Consensus 185 Qav~~lg~gl~v~A~a~DG-~IEAie~~~~~f~lGVQWHPE~~~~~~~~~~~LF~aFv~a~r~~~~~ 250 (254)
T PRK11366 185 QGAKVVSPRLRVEARSPDG-LVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHIAE 250 (254)
T ss_pred HHHHCCCCCCEEEEEECCC-CEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 4331337773899990899-77999957998589997088778767867899999999999999997
No 10
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=202.61 Aligned_cols=170 Identities=27% Similarity=0.399 Sum_probs=130.1
Q ss_pred CCCHHHHHCCCCEEEECCC-------CCCCCCHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2344566216983997377-------786550168-----------8899887404763223557699999999875168
Q gi|254780195|r 337 KEDPVKHFYGVHGILVPGG-------FGKRGSEGK-----------IAAIKFARENKIPFLGICFGMQMAVIEAARNLAG 398 (544)
Q Consensus 337 ~~~~~~~L~~~dGIlVPGG-------FG~RGieGk-----------I~Ai~yARen~iP~LGIClGmQ~avIEfARnvlg 398 (544)
.+++...|..+||++++|| +|....+-. +.-|+-|-|.++|.||||+|||++ ||.
T Consensus 51 ~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Qll------NVa- 123 (243)
T COG2071 51 PEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLL------NVA- 123 (243)
T ss_pred HHHHHHHHHHCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHH------HHH-
T ss_conf 7789999865367895289868987839888855677884300778999999997699889984015788------787-
Q ss_pred CCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHH
Q ss_conf 89997000356666412115011234653001565546740231652578558706688637984766025233327889
Q gi|254780195|r 399 IPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRY 478 (544)
Q Consensus 399 l~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y 478 (544)
|..|-++-|...+...+..+ +..--++.+++++++||++++++|...+. ||+-+
T Consensus 124 --------~GGtL~q~i~~~~~~~~H~~----------~~~~~~~~H~V~i~~~s~La~i~g~~~~~--------VNS~H 177 (243)
T COG2071 124 --------LGGTLYQDISEQPGHIDHRQ----------PNPVHIESHEVHIEPGSKLAKILGESEFM--------VNSFH 177 (243)
T ss_pred --------HCCEEEHHHHCCCCCCCCCC----------CCCCCCCEEEEEECCCCCHHHHCCCCCEE--------ECCHH
T ss_conf --------56753021230545002569----------99865431579954784177753765226--------31517
Q ss_pred HHHHHH--CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 989997--8959999869998689998389984999724877327876988-4158999999987
Q gi|254780195|r 479 REKLEG--CGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPH-PLFVSFIQATVLY 540 (544)
Q Consensus 479 ~~~le~--~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~ph-PLF~~fi~Aal~~ 540 (544)
++.+.+ .||+++++++|| +||+||.++++|++|||||||+...-..+. -||.+|+.|+..+
T Consensus 178 hQaIk~La~~L~V~A~a~DG-~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 178 HQAIKKLAPGLVVEARAPDG-TVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred HHHHHHHCCCCEEEEECCCC-CEEEEEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78999767886799997999-58989853885079986175552267868899999999998751
No 11
>pfam07722 Peptidase_C26 Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.
Probab=99.92 E-value=4.6e-24 Score=194.17 Aligned_cols=179 Identities=27% Similarity=0.325 Sum_probs=121.5
Q ss_pred CCCHHHH--HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCC--------CCCC------C----
Q ss_conf 4813468--888888888787367241677225656723445662169839973777--------8655------0----
Q gi|254780195|r 302 HLKDAYR--SLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGF--------GKRG------S---- 361 (544)
Q Consensus 302 ~l~DaY~--Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGF--------G~RG------i---- 361 (544)
....+|+ |-.+|+.-|| ..+-+.+...+ .++..+.|+.+||+|+|||- |..- +
T Consensus 19 ~~~~~yi~~~Yv~~i~~aG----g~pv~iP~~~~---~~~~~~~l~~~dGlll~GG~~di~P~~yg~~~~~~~~~~~~~R 91 (219)
T pfam07722 19 AAGASYIAASYVKAVEGAG----GLPVLLPILED---PEDLEALLDLVDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPAR 91 (219)
T ss_pred CCHHHHHHHHHHHHHHHCC----CEEEEECCCCC---HHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 1048888589999999859----99999789999---8999999976798998598876782214677686678757888
Q ss_pred -HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEE
Q ss_conf -1688899887404763223557699999999875168899970003566664121150112346530015655467402
Q gi|254780195|r 362 -EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATM 440 (544)
Q Consensus 362 -eGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTM 440 (544)
.=-+..+++|+++++|.||||+|||++.+.|.-... .|.. ......... ......
T Consensus 92 d~~e~~l~~~a~~~~~PilGICrG~Qllnv~~GGtL~--q~i~-------------~~~~~~~~~---------~~~~~~ 147 (219)
T pfam07722 92 DAFELALIRAALERGKPILGICRGMQLLNVALGGTLY--QDIP-------------EHPGNSDHH---------HQLAVQ 147 (219)
T ss_pred HHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCC--CCCC-------------CCCCCCCCC---------CCCCCC
T ss_conf 9999999999987699879976508999999678300--0230-------------125754456---------688764
Q ss_pred EECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCC-EEEEEECCCC
Q ss_conf 31652578558706688637984766025233327889989997895999986999868999838998-4999724877
Q gi|254780195|r 441 RLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHP-WFIGVQYHPE 518 (544)
Q Consensus 441 RLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~Hp-ffvgvQfHPE 518 (544)
..+.+++.+.++|+++++|+++.+.-.++|++.++. -..||+++|+++|| .+|+||.++|| |++|||||||
T Consensus 148 ~~~~h~v~i~~~s~l~~~~~~~~~~vnS~Hhq~I~~------l~~~l~v~A~a~Dg-~iEaie~~~~~~f~~GVQwHPE 219 (219)
T pfam07722 148 YAPSHAVSLEPGSLLARLLGAEEILVNSLHHQAIKR------LAPGLRVEATAPDG-TIEAIESPNAPYFVLGVQWHPE 219 (219)
T ss_pred CCCCEEEEECCCCHHHHHHCCCCEEEECCHHHHHHC------CCCCCEEEEEECCC-CEEEEEECCCCCCEEEEEECCC
T ss_conf 256038997789739987299845797450657740------48985899994899-7899996699986799972889
No 12
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=99.86 E-value=4.6e-21 Score=172.53 Aligned_cols=181 Identities=28% Similarity=0.408 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC-CHHHHHHHHHHHCCCCCHHHH
Q ss_conf 8134688888888887873672416772256567234456621698399737778655-016888998874047632235
Q gi|254780195|r 303 LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG-SEGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 303 l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RG-ieGkI~Ai~yARen~iP~LGI 381 (544)
+-|.|-|....+.|+-..+++.+++.+.++... + ...+.++|||++.||.|... ..+.+..++.+.++++|+|||
T Consensus 2 iiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~---~-~~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~~~~PiLGI 77 (187)
T pfam00117 2 LIDNGDSFTYNLARALRELGVEVEVVPNDTPAE---E-ILELLNPDGIIISPGPGSPGDAGGAIEAIKELRENKIPILGI 77 (187)
T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCHH---H-HHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHHCCCCEEEE
T ss_conf 893786389999999986899799998999869---9-985259998999199861101345899999999779989999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC-
Q ss_conf 5769999999987516889997000356666412115011234653001565546740231652578558706688637-
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG- 460 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg- 460 (544)
|||||++..+|..+|-.. .....|.+++... .+. ..++
T Consensus 78 ClG~Qll~~~~Gg~v~~~--------------------------------~~~~~G~~~~i~~-------~~~--~~~~~ 116 (187)
T pfam00117 78 CLGHQLLALAFGGKVIKA--------------------------------KEPHHGKNSPVGH-------DKG--LFYGL 116 (187)
T ss_pred EHHHHHHHHHCCCCCCCC--------------------------------CEEECCEEEEECC-------CHH--HHCCC
T ss_conf 888999999719986443--------------------------------1010570489732-------116--44279
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 98476602523332788998999789599998699986899983899849997248773278769884158999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi 534 (544)
......++.|+|.++++. ...++.+++.+.++..+++++.+++||| |||||||...+|.-.. ++..|+
T Consensus 117 ~~~~~~~~~Hs~~v~~~~----lp~~~~i~a~s~~~~~i~a~~~~~~~~~-gvQfHPE~~~t~~G~~-ll~nfl 184 (187)
T pfam00117 117 PNVFIVRRYHSYAVDPDT----LPDGLEVTAASDNGGEIMAIRHKENPIF-GVQFHPESSLTPGGPE-LLFNFL 184 (187)
T ss_pred CCCCEEEEEEEEEEEECC----CCCCEEEEEECCCCCCEEEEEECCCCEE-EEEECCCCCCCCCCHH-HHHHHH
T ss_conf 977377760348998625----7886299998688871899998899899-9995997799977048-998777
No 13
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.84 E-value=2.6e-20 Score=167.05 Aligned_cols=124 Identities=33% Similarity=0.508 Sum_probs=95.8
Q ss_pred CCHHHHHCCCCEEEECCCC-------CC------CCC-----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3445662169839973777-------86------550-----16888998874047632235576999999998751688
Q gi|254780195|r 338 EDPVKHFYGVHGILVPGGF-------GK------RGS-----EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGI 399 (544)
Q Consensus 338 ~~~~~~L~~~dGIlVPGGF-------G~------RGi-----eGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl 399 (544)
......+..+||++++||- |. ..+ +--+..+++|.++++|.||||+|||++ ||.
T Consensus 45 ~~~~~~l~~lDGliLtGG~Di~p~~yg~~~~~~~~~~~~~RD~~E~~l~~~a~~~~~PilGICRG~Q~i------nv~-- 116 (189)
T cd01745 45 EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLL------NVA-- 116 (189)
T ss_pred HHHHHHHHHCCEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH------HHH--
T ss_conf 999999987799997288778810038877765678886689999999999998098760350549999------999--
Q ss_pred CCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHH
Q ss_conf 99970003566664121150112346530015655467402316525785587066886379847660252333278899
Q gi|254780195|r 400 PNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYR 479 (544)
Q Consensus 400 ~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~ 479 (544)
+||||.- . -+||+.+.
T Consensus 117 ------------------------------------~GGtL~q---~-------------------------i~VNS~H~ 132 (189)
T cd01745 117 ------------------------------------LGGTLYQ---D-------------------------IRVNSLHH 132 (189)
T ss_pred ------------------------------------HCCEEEE---C-------------------------CCCCCCCH
T ss_conf ------------------------------------5985750---3-------------------------40576410
Q ss_pred HHHHH--CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCC-HHHHHHH
Q ss_conf 89997--8959999869998689998389984999724877327876988-4158999
Q gi|254780195|r 480 EKLEG--CGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPH-PLFVSFI 534 (544)
Q Consensus 480 ~~le~--~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~ph-PLF~~fi 534 (544)
+.+.+ .|+.++|+++|| .||++|.+++||++|+|||||+.......+ .||.+|+
T Consensus 133 ~~i~~l~~~l~~~a~~~dg-~iEa~~~~~~~~~~gvqwHPE~~~~~~~~~~~lF~~fv 189 (189)
T cd01745 133 QAIKRLADGLRVEARAPDG-VIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred HHHHCCCCCCEEEEECCCC-CEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 0676078886899996999-87999968999089997488678989857889999869
No 14
>PRK00758 GMP synthase subunit A; Validated
Probab=99.69 E-value=6.8e-16 Score=135.21 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 34688888888887873672416772256567234456621698399737778655016888998874047632235576
Q gi|254780195|r 305 DAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 305 DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
|.|-|-..-|.++=...++.+++.--+ ...++.+++.|||++.||=|. +-.-.+.++.++.++|+||||||
T Consensus 6 D~~dsft~ni~~~l~~~g~~v~v~~~~------~~~~~i~~~~dgiilS~GP~~---~~~~~~~~~i~~~~iPiLGIClG 76 (184)
T PRK00758 6 NNGGQYNHLIHRTLRYLGVDAKIIPNT------TPLEEIKAEPDGIILSGGPEI---ERAGNCEEYLLELDVPILGICLG 76 (184)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEECC------CCHHHHHHCCCEEEECCCCCC---CCCCCHHHHHHHCCCCEEEEEHH
T ss_conf 898638999999999789928999598------989999638998998899983---33220699998659988997177
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH-HHCCCE
Q ss_conf 9999999987516889997000356666412115011234653001565546740231652578558706688-637984
Q gi|254780195|r 385 MQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISR-IYGLDL 463 (544)
Q Consensus 385 mQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~-iYg~~~ 463 (544)
||++...|--.+- ..++ ...|...+.+...+.+.+ +...-.
T Consensus 77 ~Q~l~~~~Gg~v~-----------~~~~---------------------------~~~G~~~i~~~~~~~lf~~~~~~~~ 118 (184)
T PRK00758 77 HQLIAKAFGGEVG-----------RAEK---------------------------GEYALVEVEILDEDDILRGLPPEIT 118 (184)
T ss_pred HHHHHHHCCCCCC-----------CCCC---------------------------EEECCEEEEEECCCCCCCCCCCCCE
T ss_conf 6665876699330-----------2762---------------------------1543368999738875111588637
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 766025233327889989997895999986999868999838998499972487732787698841589999999
Q gi|254780195|r 464 IPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATV 538 (544)
Q Consensus 464 I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal 538 (544)
+. ..|.+++.. + ..++.+.+.+.++. +|+++.++.|+| |||||||-..+| ....+|..|++-|-
T Consensus 119 v~--~~H~~~v~~-----~-p~~~~v~a~s~~~~-v~~i~~~~~~i~-gvQFHPEs~~t~-~G~~ll~nFl~icg 182 (184)
T PRK00758 119 VW--ASHADEVKE-----L-PDGFEILARSDICE-VEAMKHKDKPIY-GVQFHPEVSHTE-KGEEIFKNFIKICG 182 (184)
T ss_pred EE--EEEEEEEEE-----C-CCCEEEEEECCCCC-EEEEEECCCCEE-EEEECCCCCCCC-CHHHHHHHHHHHHC
T ss_conf 87--640058996-----5-87159999849998-899998999999-999188479992-78999999999855
No 15
>PRK13147 consensus
Probab=99.65 E-value=2.2e-15 Score=131.58 Aligned_cols=187 Identities=21% Similarity=0.260 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CCC--CCC---HHHHHHHHHHHCCCCCHH
Q ss_conf 688888888887873672416772256567234456621698399737-7-786--550---168889988740476322
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FGK--RGS---EGKIAAIKFARENKIPFL 379 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG~--RGi---eGkI~Ai~yARen~iP~L 379 (544)
-.||..||++|+...+...++.+++ + .+.++++|.+++|| | |+. +.. .|-..+++-..+++.|+|
T Consensus 13 i~Sv~~al~~~~~~~gl~~~~~i~~-------~-~~~i~~~d~lILPGVGsF~~~m~~L~~~~~l~~~i~~~~~~~~piL 84 (211)
T PRK13147 13 LASAARALEKAATRKGIDATVVISA-------D-PTDVRNADRIVLPGQGAFADCAQGLAAIPGLRNAIETATAAGTPFL 84 (211)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEC-------C-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEE
T ss_conf 9999999998875358884399969-------9-9999649978989866489999998863585999999997699879
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHH-HH-
Q ss_conf 3557699999999875168899970003566664121150112346530015655467402316525785587066-88-
Q gi|254780195|r 380 GICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLI-SR- 457 (544)
Q Consensus 380 GIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~-~~- 457 (544)
|||||||++. ..|+|+..+. -..+++-....-. .......++|+ ..+.+.+++.. .+
T Consensus 85 GICLGMQlL~------------~~s~E~g~~~--GLgli~G~v~kl~-~~~~kvPhiGW------n~i~~~~~~~~~~~~ 143 (211)
T PRK13147 85 GICVGMQLMA------------ERGLEHERTP--GFGWISGEIARMD-APGLRLPHMGW------NTLDFTPGAHPLTDG 143 (211)
T ss_pred EECHHHHHHC------------CCCCCCCCCC--CEEEEEEEEEECC-CCCCCCCEECE------EEEECCCCCCHHHCC
T ss_conf 9836757521------------6465379877--4007702899898-76788876252------688705786643247
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 637984766025233327889989997895999986999868999838998499972487732787698841589999
Q gi|254780195|r 458 IYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 458 iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
+-..+.. -+-|.|.+++ .+....++-..-..+.+-+|+-.+ .+||||||| ||-- ..--|+..|++
T Consensus 144 ~~~~~~f--YFvHSY~~~~------~~~~~~~~~~~yg~~~~s~v~k~N---i~G~QFHPE-KS~~-~Gl~ll~nFlk 208 (211)
T PRK13147 144 LIPGDHG--YFVHSYALRD------GADSDLVATTQYGGQVPAIVARGN---RAGTQFHVE-KSQE-VGLTILGNFLR 208 (211)
T ss_pred CCCCCEE--EEECCCCCCC------CCCCCEEEEEECCCEEEEEEEECC---EEEEECCCH-HCCH-HHHHHHHHHHC
T ss_conf 6768869--9961234068------888768999989998999999899---999968800-1468-68999999867
No 16
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.64 E-value=2.3e-15 Score=131.39 Aligned_cols=169 Identities=19% Similarity=0.247 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 88888888887873672416772256567234456621698399737778655016888998874047632235576999
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQM 387 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~ 387 (544)
.||..+|+ ..++.+++.--++. .+ .....+.|||++|||-|.---.+.....+-..+.++|+||||||||+
T Consensus 12 ~si~~~l~----~~G~~~~vv~~~~~-~~----~~~~~~~dgvils~GP~~~~~~~~~~~~~~i~~~~~PilGIClG~Ql 82 (181)
T cd01742 12 HLIARRVR----ELGVYSEILPNTTP-LE----EIKLKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGMQL 82 (181)
T ss_pred HHHHHHHH----HCCCEEEEEECCCC-HH----HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHH
T ss_conf 99999999----77994999969999-89----99734989899899999855579833309998479999998599999
Q ss_pred HHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH-HHCCCEEEE
Q ss_conf 9999987516889997000356666412115011234653001565546740231652578558706688-637984766
Q gi|254780195|r 388 AVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISR-IYGLDLIPE 466 (544)
Q Consensus 388 avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~-iYg~~~I~E 466 (544)
+... +|-+ ....+ ....|...+.+..++.+.+ +.....+
T Consensus 83 l~~a-----~Gg~------v~~~~---------------------------~~~~G~~~~~~~~~~~l~~~~~~~~~~-- 122 (181)
T cd01742 83 IAKA-----LGGK------VERGD---------------------------KREYGKAEIEIDDSSPLFEGLPDEQTV-- 122 (181)
T ss_pred HHHH-----CCCC------EEECC---------------------------CCEECCEEEEEECCCCCCCCCCCCEEE--
T ss_conf 9987-----5976------02189---------------------------855364478981262100588985678--
Q ss_pred ECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 02523332788998999789599998699986899983899849997248773278769884158999
Q gi|254780195|r 467 RHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 (544)
Q Consensus 467 RHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi 534 (544)
.+.|.+++.. -..++.+.+.+.++ .+++++.++.|+| |+|||||-.+.+ .-..++..|+
T Consensus 123 ~~~H~~~v~~------~p~~~~~~a~s~~~-~v~~~~~~~~~i~-gvQfHPEs~~s~-~G~~il~NFl 181 (181)
T cd01742 123 WMSHGDEVVK------LPEGFKVIASSDNC-PVAAIANEEKKIY-GVQFHPEVTHTE-KGKEILKNFL 181 (181)
T ss_pred EEECCEEEEE------CCCCEEEEEECCCC-EEEEEEECCCCEE-EEEECCCCCCCC-CHHHHHHHHC
T ss_conf 8563629984------58730799995994-0999998999989-999578889984-7379998429
No 17
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.64 E-value=4e-15 Score=129.67 Aligned_cols=183 Identities=22% Similarity=0.374 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CCC--CCC--HHHHHHHHHHHCCCCCHHH
Q ss_conf 688888888887873672416772256567234456621698399737-7-786--550--1688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FGK--RGS--EGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG~--RGi--eGkI~Ai~yARen~iP~LG 380 (544)
-.|+..||+..|. +..+ +. + .+.|.++|++++|| | |+. +-. .|...+++-..++++|.||
T Consensus 13 i~si~~al~~lG~----~~~i--i~-------~-~~~l~~~d~lIlPGvGsf~~~~~~L~~~~l~~~i~~~~~~~~PiLG 78 (204)
T PRK13141 13 LHSVSKALERLGA----EAII--TS-------D-PEEILAADAVILPGVGAFPDAMQNLRERGLVEVIKEAVASGKPLLG 78 (204)
T ss_pred HHHHHHHHHHCCC----CEEE--EC-------C-HHHHHHCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999998699----8999--79-------9-9998408989986887505687764653929999999865996897
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH-HH
Q ss_conf 55769999999987516889997000356666412115011234653001565546740231652578558706688-63
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISR-IY 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~-iY 459 (544)
||+|||++. ..|.|+..+.. ..+++-..............++ |...+.+.+.+.+.+ +-
T Consensus 79 IClGmQlL~------------~~s~E~g~~~G--Lgl~~g~v~~~~~~~~~~vPhi------Gw~~i~~~~~~~l~~~~~ 138 (204)
T PRK13141 79 ICLGMQLLF------------ESSEEFGDTEG--LGLLPGKVRRFPPGEGLKVPHM------GWNQLEFTRPSPLLAGLP 138 (204)
T ss_pred EHHHHHHHH------------HCCCCCCCCCC--CCEEEEEEEECCCCCCCCCCCC------CCEEEEECCCCHHHHCCC
T ss_conf 549899973------------01310466466--5436689997788888856510------305776113780541677
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 79847660252333278899899978959999869998689998389984999724877327876988415899999
Q gi|254780195|r 460 GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 460 g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
.....+ +.|.|.+++. +....++..+.+...+-+++-.+ .+|+||||| +|.. .-.-++..|++-
T Consensus 139 ~~~~~y--f~HSy~v~~~------~~~~~~a~~~~g~~i~a~i~~~n---i~G~QFHPE-kS~~-~G~~ilknFl~l 202 (204)
T PRK13141 139 EGAYVY--FVHSYYADPP------DEEVVAATCDYGQKFPAAVAKDN---LFGVQFHPE-KSGD-IGLKILKNFLEM 202 (204)
T ss_pred CCCCEE--EEECCEEECC------CCCCEEEEECCCCEEEEEEECCC---EEEEECCCC-CCCH-HHHHHHHHHHHH
T ss_conf 777237--8624278338------97528999559988999997199---999988985-1485-279999999997
No 18
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.61 E-value=2.2e-15 Score=131.49 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CC--CCCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 888888888878736724167722565672344566216983997377--78--65501688899887404763223557
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FG--KRGSEGKIAAIKFARENKIPFLGICF 383 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG--~RGieGkI~Ai~yARen~iP~LGICl 383 (544)
.||..||++.+ +.++|.+ + .+.+.++|+|++||. || .+...+...++.-..++++|+||||+
T Consensus 15 ~si~~~l~~lg----~~~~i~~---------~-~~~l~~~d~iILPGvG~~~~~~~~l~~~~~~i~~~~~~~~PiLGICl 80 (201)
T PRK13143 15 RSVSKGLERAG----ADVEITS---------D-PEEILSADGIVLPGVGAFGDVMENLGPLKETINEAVDDGKPFLGICL 80 (201)
T ss_pred HHHHHHHHHCC----CEEEECC---------C-HHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 99999999869----8599928---------9-99984379679738881889998765157999999986998799808
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC-CC
Q ss_conf 69999999987516889997000356666412115011234653001565546740231652578558706688637-98
Q gi|254780195|r 384 GMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG-LD 462 (544)
Q Consensus 384 GmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg-~~ 462 (544)
|||++.- .|.|+..+. -..+++-..... .......++ |...+.+.+++.+.+-.. ..
T Consensus 81 GmQll~~------------~s~E~~~~~--GLg~~~g~v~~~--~~~~~ip~~------G~~~i~~~~~~~l~~~i~~~~ 138 (201)
T PRK13143 81 GMQMLFE------------SSEEGGLTK--GLGLIPGRVVRF--PPGVKVPHM------GWNTVNIVKDCPLFEGIKDGE 138 (201)
T ss_pred HHHHHHH------------HCCCCCCCC--CCEEECCEEEEC--CCCCCCCCC------CCEEEEEECCCHHHCCCCCCC
T ss_conf 9865534------------140267644--536863389973--654446634------426876532680122866554
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 476602523332788998999789599998699986899983899849997248773278769884158999999
Q gi|254780195|r 463 LIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQAT 537 (544)
Q Consensus 463 ~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aa 537 (544)
.+. +.|.|.+.+. .....++..+.....+-+++-.+ +.||||||| +|.. .---++..|++-+
T Consensus 139 ~~y--f~Hs~~~~~~------~~~~~~~~t~~~~~~~a~i~~~n---i~GvQFHPE-ks~~-~G~~ilknF~~~~ 200 (201)
T PRK13143 139 YFY--FVHSYYADPD------DPDVIVATTDYGIEFPAVVCKGN---VFGTQFHPE-KSGE-TGLKILENFVELI 200 (201)
T ss_pred EEE--EEEEEEEEEC------CCCCEEEEECCCCEEEEEEECCC---EEEEECCCC-CCCC-CHHHHHHHHHHHH
T ss_conf 799--9714489827------98626899619980899993898---999918982-3672-5599999999986
No 19
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.60 E-value=6.8e-15 Score=128.02 Aligned_cols=161 Identities=24% Similarity=0.373 Sum_probs=101.7
Q ss_pred HHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8787367241677225656723445662169839973777865-501688899887404763223557699999999875
Q gi|254780195|r 317 SGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKR-GSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARN 395 (544)
Q Consensus 317 A~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~R-GieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARn 395 (544)
.=.++++.+++.--|+ .+++ .+ -.+.|||++-||=|.= -.+-.+..++.+.+.++|.||||||||+++..|--.
T Consensus 15 ~lrelg~~~~v~~~~~-~~~~---i~-~~~p~giIlS~GPg~p~~~~~~~~~~~~~~~~~iPILGIClG~Q~ia~~~Gg~ 89 (178)
T cd01744 15 ELLKRGCEVTVVPYNT-DAEE---IL-KLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAK 89 (178)
T ss_pred HHHHCCCEEEEEECCC-CHHH---HH-HCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC
T ss_conf 9998799799993989-9999---98-41999799899999957734449999999746998899812178899881983
Q ss_pred CCCCCCCCHHHCCC--CCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCC
Q ss_conf 16889997000356--6664121150112346530015655467402316525785587066886379847660252333
Q gi|254780195|r 396 LAGIPNACSTEFSE--AGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYE 473 (544)
Q Consensus 396 vlgl~dAnStEf~~--~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYE 473 (544)
+..++ +.. ..+|+... .+.+ + .+. .+.|.|.
T Consensus 90 v~k~~------~g~~G~n~pv~~~---------------------------------~~~~---~----~~~-~~~H~~~ 122 (178)
T cd01744 90 TYKMK------FGHRGSNHPVKDL---------------------------------ITGR---V----YIT-SQNHGYA 122 (178)
T ss_pred CCCCC------CCCCCCCCCCEEC---------------------------------CCCC---E----EEE-ECCCCEE
T ss_conf 00156------6724787121676---------------------------------8883---8----886-4475548
Q ss_pred CCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 2788998999789599998699986899983899849997248773278769884158999
Q gi|254780195|r 474 VNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 (544)
Q Consensus 474 vN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi 534 (544)
+..+- -..++.+++.+.+...+++++.+++||| |||||||-...|...+.+|..|+
T Consensus 123 v~~~~----lp~~~~v~a~s~~d~~i~ai~h~~~~i~-GVQFHPEs~~~~~~~~~if~nFl 178 (178)
T cd01744 123 VDPDS----LPGGLEVTHVNLNDGTVEGIRHKDLPVF-SVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred EEECC----CCCCCEEEEECCCCCCEEEEEECCCCEE-EEEECCCCCCCCCCCHHHHHHHC
T ss_conf 76245----8998579996489985799998999999-99859979999977489897239
No 20
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.60 E-value=3e-15 Score=130.62 Aligned_cols=180 Identities=26% Similarity=0.390 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CCC--CCCH--HHHHHHHHHHCCCCCHHHH
Q ss_conf 88888888887873672416772256567234456621698399737-7-786--5501--6888998874047632235
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FGK--RGSE--GKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG~--RGie--GkI~Ai~yARen~iP~LGI 381 (544)
.||..||+..+. +...+. + .+.|+++|+|++|| | |++ +-++ |...+++-+.++++|+|||
T Consensus 12 ~si~~~l~~lg~------~~~ii~-------~-~~~l~~~d~iIlPGvG~f~~~~~~l~~~~~~~~i~~~~~~~~PiLGI 77 (198)
T cd01748 12 RSVANALERLGA------EVIITS-------D-PEEILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGI 77 (198)
T ss_pred HHHHHHHHHCCC------CEEEEC-------C-HHHHHHCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEE
T ss_conf 999999998799------299979-------9-99983089899878874034444410038199999998769968999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH-HHC
Q ss_conf 5769999999987516889997000356666412115011234653001565546740231652578558706688-637
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISR-IYG 460 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~-iYg 460 (544)
|+|||++. ..|+|++.+.. ..+++-....-......... ..|...+.+..++...+ +-.
T Consensus 78 ClG~QlL~------------~~s~E~~~~~g--Lg~~~g~V~~~~~~~~~~iP------~iGwn~i~~~~~~~~~~~~~~ 137 (198)
T cd01748 78 CLGMQLLF------------ESSEEGGGTKG--LGLIPGKVVRFPASEGLKVP------HMGWNQLEITKESPLFKGIPD 137 (198)
T ss_pred EEEEEEEE------------EEEECCCCCCC--CCCCCEEEEECCCCCCCCCC------CCCEEEEECCCCCCHHCCCCC
T ss_conf 81145466------------67650686355--36554099988777788664------112246750336803207776
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 98476602523332788998999789599998699986899983899849997248773278769884158999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi 534 (544)
..... ..|.|.+.+ .+....++..+.+...+-+++-.+ .+||||||| +|.. .-..++..||
T Consensus 138 ~~~~y--F~HS~~v~~------~~~~~~~a~~~~~~~~~a~i~~~n---i~GvQFHPE-kS~~-~G~~ll~nFl 198 (198)
T cd01748 138 GSYFY--FVHSYYAPP------DDPDYILATTDYGGKFPAAVEKDN---IFGTQFHPE-KSGK-AGLKLLKNFL 198 (198)
T ss_pred CCEEE--EEECCEEEC------CCCCEEEEEECCCCEEEEEEECCC---EEEEECCCC-CCCH-HHHHHHHHHC
T ss_conf 75358--862417752------897506889759983999998799---999978985-2476-0899999539
No 21
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.57 E-value=2.3e-14 Score=124.21 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 34688888888887873672416772256567234456621698399737778655016888998874047632235576
Q gi|254780195|r 305 DAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 305 DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
|.|=|-..-|.|.=.++++.+++.--|+-.++ . .+ ..+.|||++-||=|.---.|....+-..-..++|.||||||
T Consensus 6 D~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~--~-i~-~~~pdgiiLS~GPg~P~~~~~~~~~i~~~~~~iPiLGIClG 81 (192)
T PRK05670 6 DNYDSFTYNLVQYLGELGAEVVVYRNDEITLE--E-IE-ALAPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLG 81 (192)
T ss_pred ECCCCHHHHHHHHHHHCCCEEEEEECCCCCHH--H-HH-HCCCCEEEECCCCCCHHHCCCHHHHHHHHCCCCCEEEEEHH
T ss_conf 68986899999999868996999989989999--9-98-50989899999999936605549999973469978998477
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEE
Q ss_conf 99999999875168899970003566664121150112346530015655467402316525785587066886379847
Q gi|254780195|r 385 MQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLI 464 (544)
Q Consensus 385 mQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I 464 (544)
||++...|--.|- .+++ ...|.+ ..+......+...+...-.+
T Consensus 82 ~Qlia~~~Gg~v~-------------------~~~~-------------~~hG~~-----~~i~~~~~~lf~~~~~~~~v 124 (192)
T PRK05670 82 HQAIGEAFGGKVV-------------------RAKE-------------IMHGKT-----SPIEHDGKGIFAGLPNPFTV 124 (192)
T ss_pred HHHHHHHCCCEEE-------------------ECCC-------------CCCCEE-----EEEEECCCCCCCCCCCCCEE
T ss_conf 8999987197388-------------------8886-------------363704-----89998999871588887468
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 660252333278899899978959999869998689998389984999724877327876988415899999998
Q gi|254780195|r 465 PERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVL 539 (544)
Q Consensus 465 ~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~ 539 (544)
. | .|.|.++..-. ..++.+.+.+.|+ .+++++-++.|+| |||||||-..+ .....+|..|++-|+.
T Consensus 125 ~-~-~Hs~~v~~~~l----p~~~~v~a~s~d~-~i~a~~~~~~~~~-gvQFHPEs~~t-~~G~~il~nFl~~~~g 190 (192)
T PRK05670 125 T-R-YHSLVVERESL----PDCLEVTAWTDDG-EIMGVRHKELPIY-GVQFHPESILT-EHGHKLLENFLELALG 190 (192)
T ss_pred E-E-CCEEEEEECCC----CCCEEEEEEECCC-CEEEEEECCCCEE-EEEECCCCCCC-CCHHHHHHHHHHHHCC
T ss_conf 6-1-12079993347----9967999997997-1999998999989-99679988998-1769999999997513
No 22
>PRK13176 consensus
Probab=99.56 E-value=3e-14 Score=123.41 Aligned_cols=190 Identities=19% Similarity=0.279 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCC---HHHHHHHH-HHHCCCCCH
Q ss_conf 6888888888878736724167722565672344566216983997377--786--550---16888998-874047632
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGS---EGKIAAIK-FARENKIPF 378 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGi---eGkI~Ai~-yARen~iP~ 378 (544)
-.||..||++++.+.++..++.-++ + .+.+.++|.|++||. |+. +.. .|...++. .++.+++|+
T Consensus 13 i~Sv~~al~~~g~~~~i~~~i~~~~-------~-~~~~~~~~~lILPGVGsf~~~m~~L~~~~g~~~~i~~~~~~~~~pi 84 (216)
T PRK13176 13 LHSATKAFERAAREAGIAAEIDVTS-------D-PDRVARADRIVLPGVGAFADCRRGLDAVDGMVEALTEAVEKKARPF 84 (216)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEC-------C-HHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCE
T ss_conf 9999999999876438896099978-------9-9998379979989987789999987762772899999999769957
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCC-CCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH
Q ss_conf 2355769999999987516889997000356666412115011234-653001565546740231652578558706688
Q gi|254780195|r 379 LGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKG-DQQEKRLPSDDLGATMRLGAYDVSLKEETLISR 457 (544)
Q Consensus 379 LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~-~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~ 457 (544)
||||||||++. -.|.|+..+. -..+++-.... ..........++|+ ..+.+...+.+.+
T Consensus 85 LGIClGmQlL~------------~~s~E~~~~~--GLgli~G~V~kl~~~~~~~kvPh~GW------n~v~~~~~~~~~~ 144 (216)
T PRK13176 85 LGICVGMQLMA------------TRGLEKTVTD--GLGWIAGDVVEITPSDPSLKIPHMGW------NTLDVKRPHPVFD 144 (216)
T ss_pred EEEEHHHEEHH------------HCCCCCCCCC--CEEEEEEEEEECCCCCCCCCCCEECH------HHEEECCCCHHHC
T ss_conf 99853121265------------3686788867--33067249999478886764864167------7868678867773
Q ss_pred HHC--CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 637--984766025233327889989997895999986999868999838998499972487732787698841589999
Q gi|254780195|r 458 IYG--LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 458 iYg--~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
-.. .+...=-+-|.|.+++.- ....++-.+-....+-+|+-.+ .+||||||| ||.. .---|+..|++
T Consensus 145 ~i~~~~~~~~fYFvHSY~~~~~~------~~~~~a~t~yg~~f~a~v~k~N---i~G~QFHPE-KS~~-~Gl~ll~nFl~ 213 (216)
T PRK13176 145 GIPTGDKGLHAYFVHSYHLAAAN------EADVLAHADYGGPVTAIVGRDT---MVGTQFHPE-KSQR-LGLALIANFLK 213 (216)
T ss_pred CCCCCCCCCEEEEEEEEEEECCC------CCCEEEEEECCCEEEEEEEECC---EEEECCCCC-CCCH-HHHHHHHHHHC
T ss_conf 87778887358999756760488------4779999975998999998399---999909931-0278-49999999856
No 23
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.55 E-value=4.6e-14 Score=122.02 Aligned_cols=181 Identities=20% Similarity=0.190 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 14813468888888888787367241677225656723445662169839973777865501688899887404763223
Q gi|254780195|r 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 301 ~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LG 380 (544)
++..|+|--. +.+.=-++++.+++.--+....+ .-...+.|||++-||=|.---.+....+.-+-++++|+||
T Consensus 4 iD~~dsft~~---i~r~lr~~g~~~~v~p~~~~~~~----~~~~~~~~giiLS~GPg~p~~~~~~~~~~~~l~~~iPiLG 76 (184)
T cd01743 4 IDNYDSFTYN---LVQYLRELGAEVVVVRNDEITLE----ELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILG 76 (184)
T ss_pred EECCCCHHHH---HHHHHHHCCCEEEEEECCCCCHH----HHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 9379817999---99999867995999989999999----9973297999999999892561460999999846998999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC
Q ss_conf 55769999999987516889997000356666412115011234653001565546740231652578558706688637
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG 460 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg 460 (544)
||+|||++...|--.|- .++ ....|. ..++.+.+.++...+-.
T Consensus 77 IC~G~Qll~~~~Gg~v~-------------------~~~-------------~~~~G~-----~~~i~~~~~~~~~~~~~ 119 (184)
T cd01743 77 VCLGHQAIAEAFGGKVV-------------------RAP-------------EPMHGK-----TSEIHHDGSGLFKGLPQ 119 (184)
T ss_pred ECHHHHHHHHHCCCEEE-------------------ECC-------------CCEECE-----EEEEEECCCCCEECCCC
T ss_conf 80999999998398487-------------------457-------------514054-----58999779763642788
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 98476602523332788998999789599998699986899983899849997248773278769884158999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi 534 (544)
...+.- -|.|.+...- ...++.+.+.++++ .+++++.++.|+| |||||||-.-++ .-.-++..|+
T Consensus 120 ~~~v~~--~Hs~~~~~~~----~~~~~~~~a~~~~~-~i~ai~~~~~~i~-GvQFHPEs~~t~-~G~~il~nFl 184 (184)
T cd01743 120 PFTVGR--YHSLVVDPDP----LPDLLEVTASTEDG-VIMALRHRDLPIY-GVQFHPESILTE-YGLRLLENFL 184 (184)
T ss_pred CCEEEE--EEEEEEECCC----CCCCCEEEEECCCC-CEEEEEECCCCEE-EEEECCCCCCCC-CHHHHHHHHC
T ss_conf 888988--6146898135----78750799988998-4999998999989-998368768982-7389998439
No 24
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=99.54 E-value=1.1e-12 Score=112.11 Aligned_cols=252 Identities=21% Similarity=0.289 Sum_probs=179.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH-HHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 89999999974998768999238758999999998-64198867724038986202668988764948899998387888
Q gi|254780195|r 192 TQHSVKELQALGVHPDILLIRADRDIPEMERRKIS-LFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENV 270 (544)
Q Consensus 192 TQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIa-lfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~ 270 (544)
|-.=||.||+-|=+.=.|.-.... +++.++|+. .+=++. ..+|.+.++-+..-.-
T Consensus 121 TRaLv~~iR~~G~m~g~I~~~~~~--~~~~~~~~~f~~p~~~---------------------~~nLv~~Vst~~~~~~- 176 (383)
T TIGR01368 121 TRALVKKIREKGTMKGVISTEDSN--DEELVEKAKFESPDID---------------------GINLVAEVSTKEPYTW- 176 (383)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHHCCCCC---------------------CCCCCCCEECCCCEEE-
T ss_conf 799999986358547899606767--0356778654246757---------------------7652010011465560-
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEH---HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 8620478999998741843437999952---0014813468888888888787367241677225656723445662169
Q gi|254780195|r 271 SLPQIDNWQTFCDRTLSLKNEVKVAIVG---KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGV 347 (544)
Q Consensus 271 ~~~~l~~W~~~~~~~~~~~~~V~IaiVG---KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~ 347 (544)
....++.|+-+ ....+-+++.+|+++= |. +|++.|. .+-+++.=+.++. ++.+.++-.
T Consensus 177 ~~~~~~~~~~~-~~~~~g~~~~~Vv~~DfG~K~--------nIlr~L~------~rG~~v~vVP~~~----~~~~i~~~~ 237 (383)
T TIGR01368 177 GQGTWNLWKFF-VAKRNGKKPLRVVVIDFGVKQ--------NILRRLV------KRGCEVTVVPYDT----DAEEIKKYN 237 (383)
T ss_pred CCCCCHHHHHH-HHCCCCCCCEEEEEEECCCCH--------HHHHHHH------HCCCEEEEECCCC----CHHHHHHHC
T ss_conf 68864166432-211368973599998558875--------5898997------6698799967899----889998657
Q ss_pred -CEEEECCCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC--CCCCCEECCCHHC
Q ss_conf -839973777865--50168889988740476322355769999999987516889997000356--6664121150112
Q gi|254780195|r 348 -HGILVPGGFGKR--GSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSE--AGVPVIALMSEWM 422 (544)
Q Consensus 348 -dGIlVPGGFG~R--GieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~--~~~pvI~~l~e~~ 422 (544)
|||++=.|=|+= -++-.|..+|-.-++++|+||||||-|+....|-=+-..|| |.. .-+||.++.+.
T Consensus 238 PDGiflSNGPGDPH~~~~~~i~~~~~l~~~~~P~fGICLGHQllALA~Ga~TyKlK------FGHRG~NhPV~~~~~g-- 309 (383)
T TIGR01368 238 PDGIFLSNGPGDPHAAVEPAIETVRELLEAKIPIFGICLGHQLLALAFGAKTYKLK------FGHRGGNHPVKDLRTG-- 309 (383)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECC------CCCCCCCCCEEECCCC--
T ss_conf 88899908798805678999999999984489710026668999997388700046------5678875131442798--
Q ss_pred CCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEE
Q ss_conf 34653001565546740231652578558706688637984766025233327889989997895999986999868999
Q gi|254780195|r 423 KGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVV 502 (544)
Q Consensus 423 ~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEii 502 (544)
.|.++ =..|-|-|.++-. ....+.++=++.+..=+|.|
T Consensus 310 -----------------------~v~IT----------------sQNHGyAVD~~sl---~~~~~~~th~nLNDgt~EG~ 347 (383)
T TIGR01368 310 -----------------------RVEIT----------------SQNHGYAVDEESL---LAGDLEVTHVNLNDGTVEGI 347 (383)
T ss_pred -----------------------EEEEE----------------EECCCEECCHHHC---CCCCEEEEEEECCCCCCCCC
T ss_conf -----------------------79999----------------7068712575355---78853899983597933153
Q ss_pred EECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 83899849997248773278769884158999999
Q gi|254780195|r 503 EYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQAT 537 (544)
Q Consensus 503 El~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aa 537 (544)
+.++-|+ +.||||||=..=|.+...||..|++..
T Consensus 348 ~h~~~P~-fSVQyHPEA~PGPhD~~~lFd~F~~~~ 381 (383)
T TIGR01368 348 RHKDLPV-FSVQYHPEASPGPHDTEYLFDEFIDLI 381 (383)
T ss_pred CCCCCCE-EEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 0058786-677006888887002379999999998
No 25
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.54 E-value=4e-14 Score=122.45 Aligned_cols=181 Identities=27% Similarity=0.334 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCC--HHHHHHHHHHHCCCCCHHH
Q ss_conf 6888888888878736724167722565672344566216983997377--786--550--1688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGS--EGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGi--eGkI~Ai~yARen~iP~LG 380 (544)
-.|+..||+++| .++.+. +++ +.+..+|++++||= |+. .+. -|.+.+++=+-+.+.||||
T Consensus 14 L~Sv~~Aler~G------~~~~vs-------~d~-~~i~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LG 79 (204)
T COG0118 14 LRSVKKALERLG------AEVVVS-------RDP-EEILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLG 79 (204)
T ss_pred HHHHHHHHHHCC------CEEEEE-------CCH-HHHHHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEE
T ss_conf 999999999759------806981-------698-897108887866978889999988863669999999755997799
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC
Q ss_conf 55769999999987516889997000356666412115011234653001565546740231652578558706688637
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG 460 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg 460 (544)
||||||++. ..|+|.+.+ +-..+++-....-.. ...+..+||+. .+.+.+++.+.+--.
T Consensus 80 IClGMQlLf------------e~SeE~~~~--~GLg~i~G~V~r~~~-~~~kvPHMGWN------~l~~~~~~~l~~gi~ 138 (204)
T COG0118 80 ICLGMQLLF------------ERSEEGGGV--KGLGLIPGKVVRFPA-EDLKVPHMGWN------QVEFVRGHPLFKGIP 138 (204)
T ss_pred EEHHHHHHH------------HCCCCCCCC--CCCCEECCEEEECCC-CCCCCCCCCCC------EEECCCCCHHHCCCC
T ss_conf 817577766------------415436898--870213016887688-88878866652------231267874432899
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 984766025233327889989997895999986999-868999838998499972487732787698841589999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDH-ALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~-~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
.. -|=|-|.+.|.+..+.. .+.+...=| ..+-+|+-.+ ++|+||||| ||-. .---|...|++
T Consensus 139 ~~------~~~YFVHSY~~~~~~~~--~v~~~~~YG~~f~AaV~k~N---~~g~QFHPE-KSg~-~Gl~lL~NFl~ 201 (204)
T COG0118 139 DG------AYFYFVHSYYVPPGNPE--TVVATTDYGEPFPAAVAKDN---VFGTQFHPE-KSGK-AGLKLLKNFLE 201 (204)
T ss_pred CC------CEEEEEEEEEECCCCCC--EEEEECCCCCEEEEEEEECC---EEEEECCCC-CCHH-HHHHHHHHHHH
T ss_conf 88------77999978761579986--18886468983589997088---999923863-1138-78999999984
No 26
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.54 E-value=1e-13 Score=119.60 Aligned_cols=183 Identities=19% Similarity=0.200 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHH-HHHHHHHCCCCCHHHHHH
Q ss_conf 3468888888888787367241677225656723445662169839973777865501688-899887404763223557
Q gi|254780195|r 305 DAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKI-AAIKFARENKIPFLGICF 383 (544)
Q Consensus 305 DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI-~Ai~yARen~iP~LGICl 383 (544)
|.|=|-..-|.|.=..++..+.+.--|.-.++ +. +. .+.|||++-||=|.-.-.|.. ..++ .-+.++|.|||||
T Consensus 6 Dn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~--~i-~~-~~pd~IiLSpGPg~p~~~~~~~~~~~-~~~~~iPILGICl 80 (195)
T PRK07649 6 DNYDSFTYNLVQYLGELGQELVVKRNDEVTIS--DI-EN-MKPDFLMISPGPCSPNEAGISMEVIR-YFAGKIPIFGVCL 80 (195)
T ss_pred ECCCCHHHHHHHHHHHCCCEEEEECCCCCCHH--HH-HH-CCCCEEEECCCCCCHHHCCCCHHHHH-HHCCCCCEEEECH
T ss_conf 58980799999999978997999889968999--99-84-19898998899999578476146799-7528997843029
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCE
Q ss_conf 69999999987516889997000356666412115011234653001565546740231652578558706688637984
Q gi|254780195|r 384 GMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDL 463 (544)
Q Consensus 384 GmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~ 463 (544)
|||+++..|--.+...+ ..+ .|.+ ..+.....++...+ ....
T Consensus 81 G~Q~ia~~~Gg~v~~~~---~~~-----------------------------hG~~-----~~i~~~~~~lf~g~-~~~~ 122 (195)
T PRK07649 81 GHQSIAQVFGGEVVRAE---RLM-----------------------------HGKT-----SLMHHDGKTIFSDI-PNPF 122 (195)
T ss_pred HHHHHHHHCCCCEEECC---CEE-----------------------------ECEE-----EEEEECCCCCCCCC-CCCE
T ss_conf 99999987397283379---607-----------------------------6406-----57998897634388-8875
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 766025233327889989997895999986999868999838998499972487732787698841589999999
Q gi|254780195|r 464 IPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATV 538 (544)
Q Consensus 464 I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal 538 (544)
..-|+ |.+.+..+-. -.++.+++++.|+. +++++-++.|+| |||||||-.-++ ...-+|..||+---
T Consensus 123 ~v~~y-Hs~~v~~~~l----p~~~~v~a~s~~~~-i~ai~h~~~pi~-GVQFHPEs~~T~-~G~~il~NFl~k~~ 189 (195)
T PRK07649 123 TATRY-HSLIVKKETL----PDCFEVTAWTEEGE-IMAIRHKTLPIE-GVQFHPESIMTS-HGKELLQNFIRKYS 189 (195)
T ss_pred EEEEC-CCEEEEECCC----CCCEEEEEECCCCC-EEEEEECCCCEE-EEEECCCCCCCC-CHHHHHHHHHHHHC
T ss_conf 89861-6158962357----87428999948997-899993899889-998689888997-76899999998613
No 27
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.53 E-value=4.2e-14 Score=122.33 Aligned_cols=179 Identities=20% Similarity=0.298 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CCC--CCCH--HHHHHH-HHHHCCCCCHHH
Q ss_conf 88888888887873672416772256567234456621698399737-7-786--5501--688899-887404763223
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FGK--RGSE--GKIAAI-KFARENKIPFLG 380 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG~--RGie--GkI~Ai-~yARen~iP~LG 380 (544)
.||..||++.++ ++.+ + ++ .+.++++|++++|| | |+. +-.. |-...+ ++..+++.|+||
T Consensus 13 ~Sv~~al~~lg~----~~~i--~-------~~-~~~i~~~d~lIlPGVGsf~~~m~~L~~~~l~~~i~~~~~~~~~piLG 78 (201)
T PRK13152 13 NSVAKAFEKIGA----INFI--A-------KN-PKDLQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILG 78 (201)
T ss_pred HHHHHHHHHCCC----CEEE--E-------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
T ss_conf 999999998699----8899--7-------89-99996589589828884999998777518588999999876996699
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH-
Q ss_conf 5576999999998751688999700035666641211501123465300156554674023165257855870668863-
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY- 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY- 459 (544)
||||||++. ..|.|+..+. -..+++-....-.........++|+ ..+.+..++.+.+-.
T Consensus 79 IClGmQlL~------------~~s~E~~~~~--GLg~i~G~v~kl~~~~~~kvPhiGW------n~v~~~~~~~l~~~~~ 138 (201)
T PRK13152 79 ICLGMQLFL------------ERGYEGGVCE--GLGFIEGEVVKFEEDLNLKIPHMGW------NELEILKQSPLYQGIP 138 (201)
T ss_pred EEHHHEEEE------------ECCCCCCCCC--CEEEEEEEEEECCCCCCCCCCCCEE------EEEEECCCCHHHCCCC
T ss_conf 852134621------------0424378636--5589976999867776766663225------8986034797563887
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 79847660252333278899899978959999869-99868999838998499972487732787698841589999
Q gi|254780195|r 460 GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSV-DHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 460 g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~-d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
..... -+-|.|.+.+ .+. .+++.+. +...+-+|+-.+ .+||||||| ||.. .---++..|++
T Consensus 139 ~~~~f--YF~HSy~v~~------~~~--~~~~~~~yg~~~~aav~~~N---i~G~QFHPE-KS~~-~Gl~lLknFl~ 200 (201)
T PRK13152 139 NKSDF--YFVHSFYVKC------KDE--FVSAKAQYGHKFVASLQKDH---IFATQFHPE-KSQN-LGLKLLENFLR 200 (201)
T ss_pred CCCEE--EEEEEEEECC------CCC--CEEEEEECCCEEEEEEEECC---EEEEECCCC-CCCH-HHHHHHHHHHC
T ss_conf 66719--9972006236------887--48999984998999998499---999918941-1677-58999999974
No 28
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.51 E-value=5.5e-13 Score=114.27 Aligned_cols=181 Identities=23% Similarity=0.342 Sum_probs=120.4
Q ss_pred CEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHC-CCCEEEECCCCCCC-CCHHHHHHH
Q ss_conf 3799995200148134688888888887873672416772256567234456621-69839973777865-501688899
Q gi|254780195|r 291 EVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFY-GVHGILVPGGFGKR-GSEGKIAAI 368 (544)
Q Consensus 291 ~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~-~~dGIlVPGGFG~R-GieGkI~Ai 368 (544)
.-+|+++-= -.=.||+..|.- +..++..+.... ++.+.++ +.|||++-.|=|+- -....|..+
T Consensus 171 ~~~V~viD~-----GvK~nIlr~L~~------rg~~v~VvP~~~----~~~~I~~~~pDGIflSNGPGDP~~~~~~i~~i 235 (355)
T PRK12564 171 GYHVVAIDF-----GVKRNILRELAE------RGCRVTVVPATT----TAEEILALNPDGVFLSNGPGDPAALDYAIEMI 235 (355)
T ss_pred CEEEEEEEC-----CCHHHHHHHHHH------CCCEEEEECCCC----CHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 718999937-----873889999998------798699968978----76576414888899679999968879999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEE
Q ss_conf 88740476322355769999999987516889997000356666412115011234653001565546740231652578
Q gi|254780195|r 369 KFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVS 448 (544)
Q Consensus 369 ~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~ 448 (544)
|-.-+.++|.||||||-|++...+--....++-.| ...-+||.++.+. .|
T Consensus 236 k~li~~~~PifGICLGHQllalA~Ga~t~Km~fGH----rG~NhPV~~l~t~-------------------------~v- 285 (355)
T PRK12564 236 KELLEGKIPIFGICLGHQLLALALGAKTYKMKFGH----RGANHPVKDLETG-------------------------KV- 285 (355)
T ss_pred HHHHCCCCCEEEECHHHHHHHHHCCCEECCCCCCC----CCCCCCCEECCCC-------------------------EE-
T ss_conf 99852698789988879999997198442055565----7899773355787-------------------------39-
Q ss_pred ECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCH
Q ss_conf 55870668863798476602523332788998999789599998699986899983899849997248773278769884
Q gi|254780195|r 449 LKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHP 528 (544)
Q Consensus 449 l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phP 528 (544)
.|. -+.|-|.|.++-. ..++.++-++.+.+-+|.+..+++| +..||||||-.--|.+...
T Consensus 286 --------------~iT-SQNHGyaVd~~sl----~~~~~vt~~nlnDgtvEGi~h~~~p-~fSVQfHPEa~pGP~D~~~ 345 (355)
T PRK12564 286 --------------EIT-SQNHGFAVDEDSL----PENLEVTHVNLNDGTVEGLRHKDLP-AFSVQYHPEASPGPHDAAY 345 (355)
T ss_pred --------------EEE-ECCCCEEECCCCC----CCCEEEEEEECCCCCCCCEEECCCC-EEEEEECCCCCCCCCCCHH
T ss_conf --------------997-1674228666658----9873999993899967217888998-7897218899989975388
Q ss_pred HHHHHHHH
Q ss_conf 15899999
Q gi|254780195|r 529 LFVSFIQA 536 (544)
Q Consensus 529 LF~~fi~A 536 (544)
||..|++.
T Consensus 346 lFd~F~~~ 353 (355)
T PRK12564 346 LFDEFVEL 353 (355)
T ss_pred HHHHHHHH
T ss_conf 99999997
No 29
>PRK13153 consensus
Probab=99.51 E-value=1.4e-13 Score=118.50 Aligned_cols=181 Identities=26% Similarity=0.346 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCCH--HHHHHHHHHHCCCCCHHH
Q ss_conf 6888888888878736724167722565672344566216983997377--786--5501--688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGSE--GKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGie--GkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.+ .++.|.. + .+.+.++|.|++||. |+. +-.. +-..+++-..+++.|+||
T Consensus 12 i~Sv~~al~~lg----~~~~ii~---------~-~~~i~~~d~lIlPGVGsf~~~m~~L~~~~l~~~i~~~~~~g~piLG 77 (203)
T PRK13153 12 LASVINAFEKIG----AKARLES---------D-PSKLKEYDKLILPGVGAFGDAMEHLKSNGMDEAIKEFAKSGKPFLG 77 (203)
T ss_pred HHHHHHHHHHCC----CCEEEEC---------C-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 999999999869----9889976---------9-9999658938987888348899977753757889999875996899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCC---CCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH
Q ss_conf 55769999999987516889997000356666412115011234---653001565546740231652578558706688
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKG---DQQEKRLPSDDLGATMRLGAYDVSLKEETLISR 457 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~---~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~ 457 (544)
||+|||++. ..|+|+.++.- ..+++-.... ..........++|+ ..+.+.+++...+
T Consensus 78 IClGmQlL~------------~~s~E~g~~~G--Lgli~G~V~~l~~~~~~~~~kiPhiGW------n~i~~~~~~~~~~ 137 (203)
T PRK13153 78 ICLGMQLLF------------EKSYEFGEHEG--LGLIEGEVVKFDESKFDEPLKVPHMGW------NRLEFKKETPLFR 137 (203)
T ss_pred EEHHHHHCC------------CCCEECCCCCC--CCEEEEEEEECCCCCCCCCCCCCCCCH------HHEECCCCCHHHC
T ss_conf 855534200------------47590675688--848877899867222355667873435------5410345686660
Q ss_pred HHCC-CEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 6379-84766025233327889989997895999986999868999838998499972487732787698841589999
Q gi|254780195|r 458 IYGL-DLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 458 iYg~-~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
-... ... -+-|+|.+.++ +. -.+....-..+.+-+++-.+ .+||||||| ||.. .--.|+..|++
T Consensus 138 ~~~~~~~~--YF~HSy~~~~~------~~-~~~~~~~~g~~~~aai~~~N---i~G~QFHPE-KS~~-~Gl~llknFl~ 202 (203)
T PRK13153 138 GLPESFYL--YFVHSYHAVCD------DK-DVLGKTTYGYEFVSAVQHDN---VFGFQPHPE-KSHD-NGLKILKNFVE 202 (203)
T ss_pred CCCCCCEE--EEEEEEECCCC------CC-CEEEEECCCCEEEEEEEECC---EEEEECCCC-CCCH-HHHHHHHHHHC
T ss_conf 77768739--99910342568------76-89999559986899998299---999928944-0778-59999999961
No 30
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.49 E-value=2.2e-13 Score=117.05 Aligned_cols=181 Identities=19% Similarity=0.219 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 34688888888887873672416772256567234456621698399737778655016888998874047632235576
Q gi|254780195|r 305 DAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 305 DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
|.|=|-..-|.|.=...++.+.+.+-|.-.+++ .+.+ +.|||++-||=|.=--.|....+--..+.++|.||||||
T Consensus 6 Dn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~---i~~~-~p~~IvlSpGPg~P~~~~~~~~~i~~~~~~iPiLGIClG 81 (187)
T PRK08007 6 DNYDSFTWNLYQYFCELGADVLVKRNDALTLAD---IDAL-KPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLG 81 (187)
T ss_pred ECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHH---HHHC-CCCEEEECCCCCCHHHCCCCHHHHHHHCCCCCEEEECHH
T ss_conf 689818999999998779979999389899999---9842-989799999999958908404689975389988998799
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEE
Q ss_conf 99999999875168899970003566664121150112346530015655467402316525785587066886379847
Q gi|254780195|r 385 MQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLI 464 (544)
Q Consensus 385 mQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I 464 (544)
||+++-.|--.|.. +...|+ |. +..+.....++...+...-.+
T Consensus 82 ~Q~ia~~~Gg~v~~---~~~~~h-----------------------------G~-----~~~i~~~~~~lf~~~~~~~~v 124 (187)
T PRK08007 82 HQAMAQAFGGKVVR---AAKVMH-----------------------------GK-----TSPITHNGEGVFRGLANPLTV 124 (187)
T ss_pred HHHHHHHCCCEEEE---CCCCCC-----------------------------CC-----CEEEEECCCCCCCCCCCCEEE
T ss_conf 99999980980734---783201-----------------------------52-----069998998626789987378
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 66025233327889989997895999986999868999838998499972487732787698841589999
Q gi|254780195|r 465 PERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 465 ~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
. | .|.+.+++.- + ..++.+++.+.++ .+++++-++.|+| |||||||-.-++. ..-++..||.
T Consensus 125 ~-~-~hs~~v~~~~---l-p~~~~v~a~~~~~-~v~ai~~~~~~~~-GVQFHPEs~~T~~-G~~il~NFl~ 186 (187)
T PRK08007 125 T-R-YHSLVVEPDS---L-PECFEVTAWSETR-EIMGIRHRQWDLE-GVQFHPESILSEQ-GHQLLANFLH 186 (187)
T ss_pred E-E-EEEEEEECCC---C-CCCEEEEEECCCC-CEEEEEECCCCEE-EEEECCCCCCCCC-HHHHHHHHHC
T ss_conf 9-7-5578886476---8-9815999992998-6899998999989-9995897799967-7899999857
No 31
>CHL00101 trpG anthranilate synthase component 2
Probab=99.49 E-value=3.1e-13 Score=116.06 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 48134688888888887873672416772256567234456621698399737778655016888998874047632235
Q gi|254780195|r 302 HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 302 ~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGI 381 (544)
+.-|+|- .=|.|.=.++++.+.+.--|.-+++ .. + ..+.|||++-||=|.=.-.|....+--.-..++|.|||
T Consensus 6 D~~dsft---~~i~r~lrelg~~~~v~~~d~~~~~--~i-~-~~~p~gIILS~GPg~p~~~~~~~~~~~~~~~~iPILGI 78 (190)
T CHL00101 6 DNYDSFT---YNLVQSLGELNSDLLVCRNDEIDLS--KI-K-NLNPRHIIISPGPGHPRDSGISLDVISSYAPTIPILGV 78 (190)
T ss_pred ECCCHHH---HHHHHHHHHCCCEEEEECCCCCCHH--HH-H-HCCCCEEEECCCCCCHHHCCCCHHHHHHHHCCCCEEEE
T ss_conf 7888089---9999999868998999869989999--99-7-07979899979999957857616899997149987897
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCC
Q ss_conf 57699999999875168899970003566664121150112346530015655467402316525785587066886379
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGL 461 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~ 461 (544)
|||||+++..|--.|-.. ...|+ |.+ ..+......+...+...
T Consensus 79 ClG~Q~ia~~~Gg~v~~~---~~~~~-----------------------------G~~-----~~i~~~~~~lf~g~~~~ 121 (190)
T CHL00101 79 CLGHQSIGYVYGGKIIKA---SKPMH-----------------------------GKT-----SLIYHNHDDLFQGLPNP 121 (190)
T ss_pred CHHHHHHHHHCCCEEEEC---CCEEE-----------------------------CCE-----EEEEECCCCCCCCCCCC
T ss_conf 398899988758649978---82043-----------------------------624-----79997898754379988
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8476602523332788998999789599998699986899983899849997248773278769884158999999
Q gi|254780195|r 462 DLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQAT 537 (544)
Q Consensus 462 ~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aa 537 (544)
..+ .+-|.+-++..- + ..++.++++++|+ .+++++-++.|++.|||||||-..++ .-..++..|++-|
T Consensus 122 ~~~--~~~hs~~v~~~~---l-p~~~~v~a~s~~~-~i~ai~h~~~~~i~GVQFHPEs~~T~-~G~~il~NFl~la 189 (190)
T CHL00101 122 FIA--TRYHSLIIDREN---L-PSCLEITAWTEDG-LIMACRHKKYPMLRGIQFHPESILTE-HGQQLLRNFLSLS 189 (190)
T ss_pred CEE--EECCEEEEEECC---C-CCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHC
T ss_conf 489--870779998045---7-8987999997999-68999978999879999748669994-8699999999860
No 32
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.49 E-value=3.3e-14 Score=123.03 Aligned_cols=179 Identities=27% Similarity=0.338 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CCC--CCC--HHHHHHHHHHHCCCCCHHHH
Q ss_conf 88888888887873672416772256567234456621698399737-7-786--550--16888998874047632235
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FGK--RGS--EGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG~--RGi--eGkI~Ai~yARen~iP~LGI 381 (544)
.||..||+..+. ..++ + .+ .+.|+++|++++|| | |+. +-. .|...+++...++++|+|||
T Consensus 13 ~si~r~l~~lg~----~~~i--~-------~~-~~~l~~~d~lIlPGvG~~~~~~~~l~~~~~~~~i~~~~~~~~PiLGI 78 (199)
T PRK13181 13 RSVANALKRLGV----EAVV--S-------SD-PEEIEGADKVILPGVGAFGQAMAALRESGLDEAIKEHVEKKQPVLGI 78 (199)
T ss_pred HHHHHHHHHCCC----EEEE--E-------CC-HHHHHHHHCEECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999998698----0999--7-------99-99974211004579865330256665638679999999769988998
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH-C
Q ss_conf 576999999998751688999700035666641211501123465300156554674023165257855870668863-7
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY-G 460 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY-g 460 (544)
|+|||++.= .|.| ..+ +-..+++-...... ..+....++| ........++.+.+-. .
T Consensus 79 ClGmQlL~~------------~~~e-g~~--~GLgl~~g~v~~~~-~~~~~~phiG------w~~i~~~~~~~lf~~~~~ 136 (199)
T PRK13181 79 CLGMQLLCE------------SSEE-GNV--KGLGLIPGDVKRFR-SGKDKVPQMG------WNSVKPLKESPLFKGIEE 136 (199)
T ss_pred EEEEEEEEE------------CCCC-CCC--CCCCEECCEEEECC-CCCCCCCCCC------CEEEEEECCCHHHCCCCC
T ss_conf 042676541------------0003-654--66666212899827-7655557777------458876216844537655
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 984766025233327889989997895999986999868999838998499972487732787698841589999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
...+ -..|.|.+.+. .....++..+.+...+-+++-.+ ++||||||| +|. ..-.-++..|++
T Consensus 137 ~~~~--yf~Hs~~v~~~------~~~~~~a~~~~g~~~~~~v~~~n---i~GvQFHPE-~s~-~~G~~il~nFl~ 198 (199)
T PRK13181 137 NSRF--YFVHSYYVPPE------DPEDVLATTNYGVPFCSAVEKDN---IYAVQFHPE-KSG-KAGLKLLKNFAE 198 (199)
T ss_pred CCEE--EEEEEEEEECC------CCCCEEEEECCCCEEEEEEECCC---EEEEECCCC-CCC-HHHHHHHHHHHC
T ss_conf 5604--88850378617------87632799638984999998999---999908978-178-609999999866
No 33
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.49 E-value=4.7e-12 Score=107.54 Aligned_cols=261 Identities=19% Similarity=0.270 Sum_probs=157.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 89999999974998768999238758999999998641988677240389862026689887649488999983878888
Q gi|254780195|r 192 TQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVS 271 (544)
Q Consensus 192 TQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~ 271 (544)
|-.=+|.||.-|-+.-+| + ++..-.++.++|+..+-.....+.+...-...+|+. .
T Consensus 118 TRaLTk~IR~~G~m~g~I-~-~~~~~~~~l~~~~~~~~~~~~~dLv~~VSt~~~y~~----------------------~ 173 (383)
T CHL00197 118 TRALVRHLRRFGTMNGCI-S-NQNLNLSYLEAKIKELPSMEGLDLAPSVTTSSYYEW----------------------D 173 (383)
T ss_pred HHHHHHHHHHCCCCEEEE-E-CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE----------------------C
T ss_conf 899999999649824999-0-798998999999874899657854248516887770----------------------6
Q ss_pred CCCHHHHHHHHHHHC-CCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH-CCCCE
Q ss_conf 620478999998741-8434379999520014813468888888888787367241677225656723445662-16983
Q gi|254780195|r 272 LPQIDNWQTFCDRTL-SLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHF-YGVHG 349 (544)
Q Consensus 272 ~~~l~~W~~~~~~~~-~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L-~~~dG 349 (544)
.+....|.....+.. .+....+|+++-= -+=.||+.+|.- .+ .++..+.+.. ++.+.+ .+.||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~VvviD~-----GiK~nILr~L~~----~g--~~v~VvP~~~----~~~~I~~~~PDG 238 (383)
T CHL00197 174 EPSHPKWFYLADNKRPHSSYPLRIIVIDF-----GVKYNILRRLKS----FG--CEITIVPATS----TYQDIMAYQPDG 238 (383)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEC-----CCCHHHHHHHHH----CC--CEEEEECCCC----CCCHHHCCCCCE
T ss_conf 88765432134344458888745999967-----771889999997----89--9899989998----511342568888
Q ss_pred EEECCCCCCC-CCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCC
Q ss_conf 9973777865-50168889988740-476322355769999999987516889997000356666412115011234653
Q gi|254780195|r 350 ILVPGGFGKR-GSEGKIAAIKFARE-NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQ 427 (544)
Q Consensus 350 IlVPGGFG~R-GieGkI~Ai~yARe-n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~ 427 (544)
|++--|=|+= -....|..++-.-+ .++|.||||||-|+.... +|-+ | .-|+-
T Consensus 239 IfLSNGPGDP~~~~~~i~~i~~li~~~~iPifGICLGHQlLalA-----~Gak----T----------~Kmkf------- 292 (383)
T CHL00197 239 ILLSNGPGDPSTVHYGIKTVKKLIKKANIPIFGICMGHQILSLA-----LEAK----T----------FKLKF------- 292 (383)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH-----CCCE----E----------EECCC-------
T ss_conf 99789999978989999999999964899789955889999997-----3983----7----------56688-------
Q ss_pred CCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCC
Q ss_conf 00156554674023165257855870668863798476602523332788998999789599998699986899983899
Q gi|254780195|r 428 EKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINH 507 (544)
Q Consensus 428 ~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~H 507 (544)
.+ |=++|||.. -|+-.|. -+.|-|.|.++ .|.+.++.++-++.+.+-+|.+..++.
T Consensus 293 ------GH-----rG~NhPV~~---------t~kv~IT-SQNHGyaVd~~---sl~~~~~~vt~~nlnD~tvEG~~~~~~ 348 (383)
T CHL00197 293 ------GH-----RGLNHPSGL---------NQQVEIT-SQNHGFAVNAE---SLAKNKVYVTHFNLNDGTVAGISHSPK 348 (383)
T ss_pred ------CC-----CCCCCCCCC---------CCCEEEE-ECCCCEEECCC---CCCCCCCEEEEECCCCCCCCCEEECCC
T ss_conf ------87-----798866015---------8757996-27876176744---478873189999388896148698899
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 84999724877327876988415899999998764
Q gi|254780195|r 508 PWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQ 542 (544)
Q Consensus 508 pffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~ 542 (544)
|+ +.||||||=..=|.+.+.||..|++.--++|.
T Consensus 349 p~-fsvQfHPEa~pGP~Ds~~lF~~F~~~~~~~k~ 382 (383)
T CHL00197 349 PY-FSVQYHPEASPGPHDADYLFEYFIEIMKHSKS 382 (383)
T ss_pred CE-EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 87-88774889898987308899999999997618
No 34
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.49 E-value=2e-13 Score=117.39 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=61.5
Q ss_pred EEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC-CCC--C--CCHHHHHH
Q ss_conf 999952001481346888888888878736724167722565672344566216983997377-786--5--50168889
Q gi|254780195|r 293 KVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG-FGK--R--GSEGKIAA 367 (544)
Q Consensus 293 ~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG-FG~--R--GieGkI~A 367 (544)
+||+ ..|+-++.|-++|++-|.-.++...++.++.. .+.|.++|++++||| |+. + .-.|...+
T Consensus 2 ~igv----lalqG~~~~hi~sl~kAl~~lg~~~e~~~v~~--------p~~l~~~d~LILPGG~f~~~m~~L~~~gl~~~ 69 (196)
T PRK13527 2 KIGV----LALQGDVEEHIDALKRALDELGINGEVVRVRR--------PEDLKDCDALIIPGGESTTIGRLMKRYGILDE 69 (196)
T ss_pred EEEE----EEECCCHHHHHHHHHHHHHHCCCCCEEEEECC--------HHHHHCCCEEEECCCCHHHHHHHHHHCCCHHH
T ss_conf 5999----97247999999999999998299905999699--------89983199799899667999999888688899
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 988740476322355769999
Q gi|254780195|r 368 IKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 368 i~yARen~iP~LGIClGmQ~a 388 (544)
++-.-+.++|+||||+|||++
T Consensus 70 i~~~i~~g~PiLGIClGmQLL 90 (196)
T PRK13527 70 IKEKIEEGLPILGTCAGLILL 90 (196)
T ss_pred HHHHHHCCCCEEEECHHHHHH
T ss_conf 999997699779970879998
No 35
>pfam01174 SNO SNO glutamine amidotransferase family. This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680.
Probab=99.48 E-value=2e-13 Score=117.43 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC-----HHHHHHH-HHHHCCC
Q ss_conf 481346888888888878736724167722565672344566216983997377786550-----1688899-8874047
Q gi|254780195|r 302 HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS-----EGKIAAI-KFARENK 375 (544)
Q Consensus 302 ~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi-----eGkI~Ai-~yARen~ 375 (544)
.|+-...|+..||+.+|+. ..++. + .+.|.++|++++|||+-.--. .|-..++ +++.+.+
T Consensus 3 alqGNl~sv~nal~~lG~e------~~~v~-------~-p~di~~ad~LILPGg~s~~~~~ll~~~gl~~~l~e~i~~~~ 68 (188)
T pfam01174 3 ALQGAVEEHEEAIKKCGAE------NKTVK-------R-PEDLAQCDALIIPGGESTAMSLLAKRYGFYEPLYEFVHNPN 68 (188)
T ss_pred CCCCCHHHHHHHHHHCCCC------EEEEC-------C-HHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 3235899999999986998------79968-------9-99994089899889887999999998688899999998079
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 6322355769999
Q gi|254780195|r 376 IPFLGICFGMQMA 388 (544)
Q Consensus 376 iP~LGIClGmQ~a 388 (544)
+|+||||+|||++
T Consensus 69 kPiLGIClGMqLL 81 (188)
T pfam01174 69 KPIWGTCAGLILL 81 (188)
T ss_pred CCEEEHHHHHHHH
T ss_conf 9663331446421
No 36
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.48 E-value=3.4e-14 Score=122.97 Aligned_cols=191 Identities=21% Similarity=0.251 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCC--HHHHHHHHHHHCCCCCH
Q ss_conf 346888888888878736724167722565672344566216983997377--786--550--16888998874047632
Q gi|254780195|r 305 DAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGS--EGKIAAIKFARENKIPF 378 (544)
Q Consensus 305 DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGi--eGkI~Ai~yARen~iP~ 378 (544)
---.||..||++.+. +...++ + .+.+.++|.|++||. |+. +.. .|...+++-+-+++.|+
T Consensus 12 GNi~Sv~~al~~~g~------~~~ii~-------~-~~~i~~~d~lILPGVGsf~~~m~~L~~~~l~~~i~~~~~~g~pi 77 (210)
T CHL00188 12 GNLHSVSRAIQQAGQ------QPCIIN-------S-ESELAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPF 77 (210)
T ss_pred HHHHHHHHHHHHCCC------CEEEEC-------C-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf 789999999998699------879979-------9-99996489689888673899999886305169999999769986
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCE-EEECCEEEEECCCCHHHH
Q ss_conf 2355769999999987516889997000356666412115011234653001565546740-231652578558706688
Q gi|254780195|r 379 LGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGAT-MRLGAYDVSLKEETLISR 457 (544)
Q Consensus 379 LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGT-MRLG~~~~~l~~~S~~~~ 457 (544)
||||||||++. + .|+|-.. +-..+++-....-.........++|+. .++....+..........
T Consensus 78 LGICLGmQlLf-----------~-~seEg~~---~GLgli~G~v~k~~~~~~~kvPh~GWn~i~~~~~~~~~~~~~~~~~ 142 (210)
T CHL00188 78 IGICLGLHLLF-----------E-TSEEGKE---EGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKA 142 (210)
T ss_pred EEEEHHEEEEE-----------H-HCCCCCC---CCCCEECCEEEECCCCCCCCCCCCCHHHEECCCCCCCCCCCCHHHC
T ss_conf 99842102210-----------2-2115676---7734566689993788664673205423244576433444511215
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 637984766025233327889989997895999986-9998689998389984999724877327876988415899999
Q gi|254780195|r 458 IYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFS-VDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 458 iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~-~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
+-..... -+-|.|.+.+. +.....+... .+...+-+|+-.+ .+||||||| ||-. .---|+..||+-
T Consensus 143 ~~~~~~~--YFvHSY~~~~~------~~~~~~~~~~yg~~~~~a~v~k~N---i~G~QFHPE-KS~~-~Gl~lL~nFl~~ 209 (210)
T CHL00188 143 WPLNPWA--YFVHSYGVMPK------SQACATTTTFYGKQQMVAAIEYDN---IFAMQFHPE-KSGE-FGLWLLREFMKK 209 (210)
T ss_pred CCCCCCE--EEEEEEEECCC------CCCEEEEEEEECCEEEEEEEEECC---EEEEECCCC-CCCH-HHHHHHHHHHHC
T ss_conf 7767707--99741355279------843799999639989999997199---999948800-0768-799999999755
Q ss_pred H
Q ss_conf 9
Q gi|254780195|r 537 T 537 (544)
Q Consensus 537 a 537 (544)
|
T Consensus 210 ~ 210 (210)
T CHL00188 210 A 210 (210)
T ss_pred C
T ss_conf 9
No 37
>PRK13175 consensus
Probab=99.48 E-value=1.6e-13 Score=118.07 Aligned_cols=182 Identities=22% Similarity=0.321 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CC--CCCC--HHHHHHHHHHHCCCCCHHHH
Q ss_conf 888888888878736724167722565672344566216983997377--78--6550--16888998874047632235
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FG--KRGS--EGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG--~RGi--eGkI~Ai~yARen~iP~LGI 381 (544)
.||..||+..|. +...++ + .+.+.++|+|++||+ |+ .+.. .|...+++-..++++|+|||
T Consensus 15 ~si~~al~~lg~------~~~i~~-------~-~~~i~~~d~lILPGvGsf~~~~~~l~~~~l~~~i~~~~~~g~PiLGI 80 (206)
T PRK13175 15 HSVCKALERLGA------EPILTS-------D-PADLLAADALILPGVGAFDPAMQNLRSRGLIPPIKDAIASGKPFLGI 80 (206)
T ss_pred HHHHHHHHHCCC------CEEEEC-------C-HHHHHCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999998799------899979-------9-89983289289689985267887555318716899998569977998
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHH-HHHC
Q ss_conf 576999999998751688999700035666641211501123465300156554674023165257855870668-8637
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLIS-RIYG 460 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~-~iYg 460 (544)
|+|||++. + .|.| .++ .-..+++-....-.........++|. ..+...+++.+. .+-.
T Consensus 81 ClGmQlL~-~-----------~see-g~~--~GLgli~g~V~k~~~~~~~~iPh~Gw------~~i~~~~~~~l~~~~~~ 139 (206)
T PRK13175 81 CLGLQLLF-E-----------SSEE-GTE--PGLGILPGKVQRFPSEPGLRIPHMGW------NQLLTQPDCPLWENLPP 139 (206)
T ss_pred EHHHHHHH-H-----------CCCC-CCC--CCCCEECEEEEECCCCCCCCCCCCCC------EEEEECCCCCCCCCCCC
T ss_conf 67866761-3-----------2534-564--77635210798626555533761045------05785178842011267
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 984766025233327889989997895999986-99986899983899849997248773278769884158999999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFS-VDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQAT 537 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~-~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aa 537 (544)
.... -+.|.|.+.+. .....++... .+...+-+++-.+ .+||||||| +|.. .---|+..||.-.
T Consensus 140 ~~~~--yf~HSy~~~~~------~~~~~~~~~~~~~~~~~a~v~~~n---i~G~QFHPE-kS~~-~G~~llknFl~~v 204 (206)
T PRK13175 140 NPWV--YFVHSYYAVPL------DPSDTAATVTHGSQKVTAAIARDN---LMAVQFHPE-KSGT-AGLKLLRNFVSQV 204 (206)
T ss_pred CCCE--EEEECCEEEEC------CCCCEEEEEECCCCCEEEEEECCC---EEEEECCCC-CCCC-CHHHHHHHHHHHH
T ss_conf 8823--89750078406------876269999608983899997899---999948982-4684-3789999999996
No 38
>PRK13179 consensus
Probab=99.47 E-value=1.7e-13 Score=117.90 Aligned_cols=181 Identities=22% Similarity=0.265 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC--CCCC--CCCH--HHHHHHHHHHCCCCCHHH
Q ss_conf 688888888887873672416772256567234456621698399737--7786--5501--688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG--GFGK--RGSE--GKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG--GFG~--RGie--GkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.+. +...++ + .+.++++|.|++|| -|+. +... |-+.+++-..+++.|+||
T Consensus 12 i~Sv~~al~~~g~------~~~i~~-------~-~~~i~~~d~lILPGVGsF~~~m~~L~~~~l~~~i~~~~~~~kpiLG 77 (207)
T PRK13179 12 LRSVQKGFEKVGF------EAVVTA-------D-PKVVLEAEKVVLPGVGAFRDCMRNLEQGGFVEPILRVIRDGRPFLG 77 (207)
T ss_pred HHHHHHHHHHCCC------CEEEEC-------C-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999998599------879968-------9-9999439989989978679999998853761689999865996899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCC-----CCCCCCCCCCCCCEEEECCEEEEECCCCHH
Q ss_conf 557699999999875168899970003566664121150112346-----530015655467402316525785587066
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGD-----QQEKRLPSDDLGATMRLGAYDVSLKEETLI 455 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~-----~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~ 455 (544)
||||||++ + -.|+|+..+.- ..+++-....- .........++|+ ..+.+.+.+..
T Consensus 78 ICLGmQlL--------f----~~S~E~g~~~G--Lgli~G~V~kl~~~~~~~~~~~kiPhiGW------n~i~~~~~~~~ 137 (207)
T PRK13179 78 ICVGMQLL--------F----TDSEEFGLYQG--LNVIPGHVLRFPEGMREGGEELKVPHMGW------NQLSIRRRPPA 137 (207)
T ss_pred EEHHHHHC--------C----CCCCCCCCCCC--CCEECEEEEECCCCCCCCCCCCCCCEEEE------EEEECCCCCCH
T ss_conf 80779963--------7----98806995577--87834079987644344465466875112------56643678831
Q ss_pred HHHH-CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 8863-7984766025233327889989997895999986999-8689998389984999724877327876988415899
Q gi|254780195|r 456 SRIY-GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDH-ALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSF 533 (544)
Q Consensus 456 ~~iY-g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~-~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~f 533 (544)
.+-- ..... -+.|.|.+.|.- .. .+.+.+.-| ..+-+|+-.+ .+||||||| ||.. ..-.|+..|
T Consensus 138 ~~~~~~~~~f--YFvHSY~~~~~~------~~-~i~~~~~yg~~~~a~v~k~N---i~G~QFHPE-KS~~-~Gl~lLknF 203 (207)
T PRK13179 138 FQGIEDGTNV--YFVHSYYVKPDD------ES-VVAATTGYGIEFCAAVWKDN---IVATQFHPE-KSQA-VGLSILKNF 203 (207)
T ss_pred HCCCCCCCEE--EEEECCEECCCC------CC-CEEEEEECCCEEEEEEEECC---EEEEECCHH-HCCH-HHHHHHHHH
T ss_conf 0144567707--998431641578------45-18999848997999999699---999958801-2558-689999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780195|r 534 IQ 535 (544)
Q Consensus 534 i~ 535 (544)
++
T Consensus 204 ~e 205 (207)
T PRK13179 204 GE 205 (207)
T ss_pred HH
T ss_conf 71
No 39
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.47 E-value=9.5e-13 Score=112.55 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHH-HHHHHHHHCCCCCHHH
Q ss_conf 481346888888888878736724167722565672344566216983997377786550168-8899887404763223
Q gi|254780195|r 302 HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGK-IAAIKFARENKIPFLG 380 (544)
Q Consensus 302 ~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGk-I~Ai~yARen~iP~LG 380 (544)
+.-|||--. |.|.=-.+++.+++.--|. +...+....+.++|||++-||=|.---.|. +..++-.-+.++|.||
T Consensus 7 Dn~DSFT~n---i~~~lr~lg~~v~V~~~d~--~~~~~~~~~~~~~dgIILSpGPg~P~~~~~~~~~i~~~~~~~iPILG 81 (221)
T PRK07765 7 DNYDSFVFN---LVQYLGQLGVEAEVWRNDD--VRLADEAAVAAGFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLG 81 (221)
T ss_pred ECCCCHHHH---HHHHHHHCCCEEEEEECCC--CCHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHCCCCCEEE
T ss_conf 388933999---9999987799189998998--99889987634899899969999801167248899875325998898
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC
Q ss_conf 55769999999987516889997000356666412115011234653001565546740231652578558706688637
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG 460 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg 460 (544)
||||||+++-.|--.|-..+ ..|+ |.+ ..+.....++...+..
T Consensus 82 IClG~Q~ia~~~Gg~v~~~~---~~~h-----------------------------G~~-----~~i~~~~~~lf~gl~~ 124 (221)
T PRK07765 82 VCLGHQAIGVAFGATVDRAP---ELLH-----------------------------GKT-----SSVHHTNVGVLQGLPD 124 (221)
T ss_pred EEHHHHHHHHHHCCEEEECC---CCCE-----------------------------EEE-----EEEEECCCCCCCCCCC
T ss_conf 70999999998397898889---5536-----------------------------568-----7999899876158999
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98476602523332788998999789599998699986899983899849997248773278769884158999999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQAT 537 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aa 537 (544)
.-.+..- |...+.++- --.++.++|.++++ .+.+++-++.| +.|||||||-.-++ ...-|+..|++-|
T Consensus 125 ~~~~~ry--HS~~v~~~~----lP~~~~v~A~s~~~-~ima~~h~~~~-i~GVQFHPEs~~T~-~G~~ll~NFl~ic 192 (221)
T PRK07765 125 PFTATRY--HSLTILPET----LPAELEVTARTDSG-VIMAVRHRELP-IHGVQFHPESILTE-GGHRMLANWLTYC 192 (221)
T ss_pred CEEEEEE--EEEEEEECC----CCCCCEEEEECCCC-CEEEEEECCCC-EEEEEECCCCCCCC-CHHHHHHHHHHHH
T ss_conf 7478874--218997615----89962899984998-68658707897-89999788535781-6699999999981
No 40
>PRK13177 consensus
Probab=99.47 E-value=2.7e-13 Score=116.49 Aligned_cols=181 Identities=22% Similarity=0.326 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC-----CCCHHHHHHHH-HHHCCCCCH
Q ss_conf 6888888888878736724167722565672344566216983997377--786-----55016888998-874047632
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK-----RGSEGKIAAIK-FARENKIPF 378 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~-----RGieGkI~Ai~-yARen~iP~ 378 (544)
-.||..||++.+... +. +. ++ .+.++++|.|++||= |+. +-..|.+.++. ...+++.|+
T Consensus 15 i~Sv~~al~~~g~~~-----~~------i~-~~-~~~i~~~d~lIlPGVGsF~~~m~~Lk~~~~~~~~i~~~~~~~~~pi 81 (207)
T PRK13177 15 LRSVHNALKAAGAEG-----VV------VT-AD-PDEVRRADRVVLPGVGAFAACMGGLRAIPGMVEAMEERVLEGGAPF 81 (207)
T ss_pred HHHHHHHHHHCCCCC-----EE------EE-CC-HHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCE
T ss_conf 999999999829982-----89------95-89-9998359979989978789999776410444899999999769956
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCC-CCCCCCCCCCCCCEEEECCEEEEECCCCHHHH
Q ss_conf 23557699999999875168899970003566664121150112346-53001565546740231652578558706688
Q gi|254780195|r 379 LGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGD-QQEKRLPSDDLGATMRLGAYDVSLKEETLISR 457 (544)
Q Consensus 379 LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~-~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~ 457 (544)
||||||||++. -.|+|+..+. -..+++-....- .........++|+ ..+.+..++. .
T Consensus 82 LGICLGmQlLf------------~~s~E~g~~~--GLgli~G~V~~l~~~~~~~kiPh~GW------n~v~~~~~~~--~ 139 (207)
T PRK13177 82 LGICVGMQLLA------------DRGEEHGVTP--GLGWIGGEVRLIEPADPSCKVPHMGW------NDVAPTTGSH--P 139 (207)
T ss_pred EEECHHHHHHH------------HCCCCCCCCC--CCCEECCEEEEECCCCCCCCCCEEEE------HEEEECCCCC--C
T ss_conf 99818788576------------5760788777--54554536898168887775876440------1025446677--6
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 637984766025233327889989997895999986999868999838998499972487732787698841589999
Q gi|254780195|r 458 IYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 458 iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
+...... -+-|.|.+.+. +...+.+-.+-....+-+++-.+ .+||||||| ||.- .---|+..|+.
T Consensus 140 ~~~~~~~--YFvHSY~~~~~------~~~~i~~~t~y~~~~~a~v~k~N---i~G~QFHPE-KS~~-~Gl~lLknFl~ 204 (207)
T PRK13177 140 LIRPGEA--YFLHSYHFVPD------DGAHVLATTDHGGGITAAVARDN---IVGVQFHPE-KSQA-YGLALLARFLD 204 (207)
T ss_pred CCCCCCE--EEEEEEEEECC------CCCCEEEEECCCCEEEEEEEECC---EEEEECCCC-CCCH-HHHHHHHHHHC
T ss_conf 6777845--78988898538------97416899737998999999599---999939920-0678-68999999877
No 41
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.47 E-value=1e-13 Score=119.48 Aligned_cols=183 Identities=19% Similarity=0.260 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CCC--CCCHH--HHHHHHHHHCCCCCHHH
Q ss_conf 688888888887873672416772256567234456621698399737-7-786--55016--88899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FGK--RGSEG--KIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG~--RGieG--kI~Ai~yARen~iP~LG 380 (544)
-.||..||++.+... ++..+ ++ .+.++++|.+++|| | |+. +...- -+..+.-..+++.|+||
T Consensus 14 i~Sv~~al~~~~~~~----~i~i~-------~~-~~~i~~~d~lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~~~kpiLG 81 (208)
T PRK13146 14 LRSAARALERAAPGA----DVTVT-------AD-PDAVRAADRLVLPGVGAFADCMRGLRAVGGLREAVEEAAAGRPFLG 81 (208)
T ss_pred HHHHHHHHHHHCCCC----EEEEE-------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 999999999857997----39996-------99-9998428878983889779999987640768999999983998798
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCC-CCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH
Q ss_conf 55769999999987516889997000356666412115011234-65300156554674023165257855870668863
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKG-DQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~-~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY 459 (544)
||||||++. -.|+|+..+. -..+++-.... ..........++|. ..+.+..++.+.+-.
T Consensus 82 ICLGmQlL~------------~~s~E~g~~~--GLgli~G~V~kl~~~~~~~kiPhiGW------n~i~~~~~~~l~~~i 141 (208)
T PRK13146 82 ICVGMQLLF------------ERGEEHGDTP--GLGWIPGDVVRLQPDGPALKVPHMGW------NTVDQPRDHPLFDGI 141 (208)
T ss_pred EEEEEEEEE------------CCCEECCCCC--CCEEECCEEEECCCCCCCCCCCCCCE------EEEEECCCCCCCCCC
T ss_conf 885464121------------1240068657--01187418999987886665744252------778856898200478
Q ss_pred -CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCC-CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf -798476602523332788998999789599998699-9868999838998499972487732787698841589999
Q gi|254780195|r 460 -GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVD-HALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 460 -g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d-~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
..... -+.|.|.+++.-... +.+.+.. ...+-+++-. =.+|+||||| ||-. ..--|+..|+.
T Consensus 142 ~~~~~f--YFvHSY~~~~~~~~~-------~~a~t~yg~~~~a~v~~~---ni~G~QFHPE-KS~~-~Gl~llknFl~ 205 (208)
T PRK13146 142 PDGARF--YFVHSYAAAPANPAD-------VLAWTDYGGPFTAAVARG---NLFATQFHPE-KSGD-AGLRLLRNFLA 205 (208)
T ss_pred CCCCEE--EEEEEEEEECCCCHH-------EEEEEECCCEEEEEEECC---CEEEEECCCC-CCCH-HHHHHHHHHHC
T ss_conf 878879--997313753188210-------089963898799999839---9999989930-0568-38999999863
No 42
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739 The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , . ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=99.46 E-value=1.2e-13 Score=118.94 Aligned_cols=156 Identities=24% Similarity=0.384 Sum_probs=107.5
Q ss_pred ECCCCCCCCCHHHHHCCCC--EEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
Q ss_conf 2256567234456621698--39973777865501688899887404763223557699999999875168899970003
Q gi|254780195|r 330 IDAETLEKEDPVKHFYGVH--GILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEF 407 (544)
Q Consensus 330 Idse~le~~~~~~~L~~~d--GIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf 407 (544)
|-||-+.-....+.|++.+ ||+.=||=..-=.++-..+.++-=+=++|.||||+|||+|+--|-=.|- .|+..||
T Consensus 23 VysE~~p~t~~~eeI~~~~P~GiILSGGP~sv~~~n~~~~~~~if~LgVPvLGICYG~Ql~A~~lGG~V~---~~~~~EY 99 (195)
T TIGR00888 23 VYSEIVPNTTPLEEIKEKNPKGIILSGGPASVYAENAPEADEKIFELGVPVLGICYGMQLMAKQLGGEVG---RAEKREY 99 (195)
T ss_pred CEEEEEECCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCEEE---ECCCCCC
T ss_conf 1357840778779986129867997278876467885022488862799688762457899998298776---5688873
Q ss_pred CCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC------CCEEEEECCCCCCCCHHHHHH
Q ss_conf 56666412115011234653001565546740231652578558706688637------984766025233327889989
Q gi|254780195|r 408 SEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG------LDLIPERHRHRYEVNVRYREK 481 (544)
Q Consensus 408 ~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg------~~~I~ERHRHRYEvN~~y~~~ 481 (544)
..+.--|++ ++.+...+=. ... |=-.|-|.
T Consensus 100 G~a~l~i~~----------------------------------~~~LF~glp~~LTA~P~~~----------VWMSH~D~ 135 (195)
T TIGR00888 100 GKAELEILD----------------------------------EDDLFEGLPKALTAKPEST----------VWMSHGDK 135 (195)
T ss_pred CEEEEEEEC----------------------------------CCHHHHCCCHHHCCCCCCC----------CCCCCCCE
T ss_conf 138999842----------------------------------8812307803534688887----------11234624
Q ss_pred HHH--CCCEEEEECCC-CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 997--89599998699-9868999838998499972487732787698841589999
Q gi|254780195|r 482 LEG--CGLKFSGFSVD-HALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 482 le~--~Gl~~sg~~~d-~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
..+ .|+.+.|.|+. - =++|++..+.||| |||||||=.=+ ..-+-|+..|+.
T Consensus 136 V~~lP~gF~vlA~s~~hc-P~aAm~~~~K~~Y-GVQFHPEV~Ht-~~G~~~L~NF~~ 189 (195)
T TIGR00888 136 VKELPEGFKVLATSDNHC-PVAAMEHEDKPIY-GVQFHPEVTHT-EYGKELLKNFVK 189 (195)
T ss_pred EEECCCCCEEEEECCCCC-CCCEEECCCCCEE-EEEECCCEEEC-HHHHHHHHHHHH
T ss_conf 200869976887528988-1000004899666-66517831215-345789998887
No 43
>PRK13173 consensus
Probab=99.46 E-value=5.9e-13 Score=114.04 Aligned_cols=176 Identities=21% Similarity=0.287 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC----------CCCHHHHHHHHHHHCCCC
Q ss_conf 6888888888878736724167722565672344566216983997377786----------550168889988740476
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGK----------RGSEGKIAAIKFARENKI 376 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~----------RGieGkI~Ai~yARen~i 376 (544)
-.||..||++.+. ++ ..+ ++ .+.++++|.+++|| -|. +|++ ..++.+- .+.
T Consensus 14 i~Sv~~al~~lg~----~~--~i~-------~~-~~~i~~~d~lILPG-VGsF~~~m~~L~~~~l~---~~i~~~~-~~k 74 (211)
T PRK13173 14 LHSASKALSAVGA----EV--SIT-------ND-PKVIAAADKIVFPG-VGAMRDCMAGMHEAGID---EVVRQAI-FNK 74 (211)
T ss_pred HHHHHHHHHHCCC----CE--EEE-------CC-HHHHHHCCEEEECC-CCCHHHHHHHHHHCCHH---HHHHHHH-CCC
T ss_conf 9999999998699----88--996-------79-99984389689757-78689999998862979---9999886-299
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCC------CCCCCCCCCCCCCEEEECCEEEEEC
Q ss_conf 3223557699999999875168899970003566664121150112346------5300156554674023165257855
Q gi|254780195|r 377 PFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGD------QQEKRLPSDDLGATMRLGAYDVSLK 450 (544)
Q Consensus 377 P~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~------~~~~~~~~~~~GGTMRLG~~~~~l~ 450 (544)
|+||||||||++. ..|+|+..++ -..+++-....- ....+....++|. ..+...
T Consensus 75 piLGICLGMQlLf------------~~s~E~g~~~--GLgli~G~V~~l~~~~~~~~~~~~kvPhiGW------n~v~~~ 134 (211)
T PRK13173 75 PVMAICVGMQALF------------EQSAENGGTP--CLSILDGTVKAFDPSWKDPKGVQIKVPHMGW------NTISGM 134 (211)
T ss_pred CEEEEEHHHHHHH------------CCCCCCCCCC--CCEEEEEEEEECCCCCCCCCCCCCCCCCEEE------EEEECC
T ss_conf 9899818889850------------6898899967--1306600698767444675555434660003------454335
Q ss_pred CCCHHHHHHCC--CEEEEECCCCCCCCHHHHHHHHHCCCEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 87066886379--84766025233327889989997895999986-9998689998389984999724877327876988
Q gi|254780195|r 451 EETLISRIYGL--DLIPERHRHRYEVNVRYREKLEGCGLKFSGFS-VDHALPEVVEYINHPWFIGVQYHPELKSRPLDPH 527 (544)
Q Consensus 451 ~~S~~~~iYg~--~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~-~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~ph 527 (544)
..+ ..++.. +.-.=-+.|.|.+.+. +... +.+.+ -....+-+|+-.+ .+||||||| ||.. .--
T Consensus 135 ~~~--~~l~~~i~~~~~fYFvHSY~~~~~------~~~~-~~~~~~yg~~f~a~v~k~N---i~G~QFHPE-KS~~-~Gl 200 (211)
T PRK13173 135 DFE--HPLWNGIDDKAHFYFVHSYYCEPA------DSSQ-VAAICDYGQPFCASILKDN---LFATQFHPE-KSHT-AGL 200 (211)
T ss_pred CCC--CHHHCCCCCCCEEEEEEEEEEECC------CCCE-EEEEEECCCEEEEEEEECC---EEEEECCHH-HCCH-HHH
T ss_conf 765--364449987860799866787037------8250-7899838988999999699---999908801-2458-689
Q ss_pred HHHHHHHH
Q ss_conf 41589999
Q gi|254780195|r 528 PLFVSFIQ 535 (544)
Q Consensus 528 PLF~~fi~ 535 (544)
.|+..|++
T Consensus 201 ~lLknFl~ 208 (211)
T PRK13173 201 QLLKNFVE 208 (211)
T ss_pred HHHHHHHC
T ss_conf 99999973
No 44
>PRK13171 consensus
Probab=99.45 E-value=5.1e-13 Score=114.47 Aligned_cols=178 Identities=21% Similarity=0.342 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CCC--CCC--HHHHHHHHHHHCCCCCHHH
Q ss_conf 688888888887873672416772256567234456621698399737-7-786--550--1688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FGK--RGS--EGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG~--RGi--eGkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.+. +..+++ + .+.++++|++++|| | |+. +.. .|.+..+ ++.++|+||
T Consensus 14 i~Sv~~al~~lg~------~~~ii~-------~-~~~i~~~~~lIlPGVGsf~~~m~~L~~~~~~~~i---~~~~~piLG 76 (200)
T PRK13171 14 LGSVRYALERLGV------EARVVR-------D-AAGLQGAQRVILPGVGAAPEAMARLRAQGLIEPL---RELQVPLIG 76 (200)
T ss_pred HHHHHHHHHHCCC------CEEEEC-------C-HHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHH---HHCCCCEEE
T ss_conf 9999999998499------879978-------9-9999529989989988789999999872126789---864997355
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCC-HHHHHH
Q ss_conf 5576999999998751688999700035666641211501123465300156554674023165257855870-668863
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEET-LISRIY 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S-~~~~iY 459 (544)
||||||++. + .|+|-+ .+-..+++-....-.........++|+ ..+....++ +...+-
T Consensus 77 IClGmQlLf-----------~-~SeEg~---~~GLgli~G~V~kl~~~~~~~vPh~GW------n~i~~~~~~~~~~~~~ 135 (200)
T PRK13171 77 ICLGMQLLF-----------E-HSEEGD---VECLGLLPGIVRHMTPALGIRVPHMGW------NRLVPMRDSALLAGLP 135 (200)
T ss_pred EEHHHHHHH-----------C-CCCCCC---CCCCCEECCEEEECCCCCCCCCCEEEE------EEEECCCCCHHHCCCC
T ss_conf 607657540-----------3-543799---766167701899867776786836424------3453367887672998
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 798476602523332788998999789599998699986899983899849997248773278769884158999999
Q gi|254780195|r 460 GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQAT 537 (544)
Q Consensus 460 g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aa 537 (544)
.....+ +-|.|.+.. .+. .++..+-....+-+++-.+ .+||||||| ||. ..--.|+..|++-+
T Consensus 136 ~~~~fY--FvHSY~~~~------~~~--~i~~~~~~~~f~a~v~~~n---i~G~QFHPE-KS~-~~Gl~ll~nF~~l~ 198 (200)
T PRK13171 136 ERASAY--FVHGYAAPV------TAD--TVAACDHGGLFTAIVQNGL---RCGAQFHPE-RSA-DTGARILRNFLEMS 198 (200)
T ss_pred CCCCEE--EECCCCCCC------CCC--EEEEECCCCEEEEEEECCC---EEEECCCCC-CCC-HHHHHHHHHHHHHH
T ss_conf 798199--982961178------887--8999427984999998199---899808943-266-75799999998540
No 45
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; InterPro: IPR010139 Imidazole glycerol phosphate synthetase (IGPS) is a key metabolic enzyme, which links amino acid and nucleotide biosynthesis: it catalyses the closure of the imidazole ring within histidine biosynthesis (fifth step), and provides the substrate for de novo purine biosynthesis. IGPS consists of two different subunits: HisH, a glutamine amidotransferase (glutaminase), and HisF, a synthase (cyclase). HisH functions to provide a source of nitrogen, which is required for the synthesis of histidine and purines. In the HisH glutaminase reaction, the hydrolysis of glutamine yields ammonia, which is then used by HisF in the subsequent synthase reaction. The X-ray structure of the HisH/HisF heterodimer of IGPS reveals a putative tunnel for the transfer of ammonia from HisH to HisF via a (beta-alpha)8 barrel fold within HisF that abuts HisH . Ammonia tunnels connect the glutaminase and synthase active sites. HisH belongs to a large group of enzymes found in diverse and fundamental anabolic pathways. These enzymes share a common domain, referred to as the type-I glutamine amidotransferase (GATase) domain, which can occur either as single polypeptides (as with HisH) or as domains of large multifunctional proteins.; GO: 0016763 transferase activity transferring pentosyl groups, 0000105 histidine biosynthetic process, 0005737 cytoplasm.
Probab=99.45 E-value=9e-14 Score=119.92 Aligned_cols=182 Identities=25% Similarity=0.364 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHH-HHHCCCCEEEECCC--CCC--CCC-H-HHHHHHHHHHCCCCCHH
Q ss_conf 68888888888787367241677225656723445-66216983997377--786--550-1-68889988740476322
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPV-KHFYGVHGILVPGG--FGK--RGS-E-GKIAAIKFARENKIPFL 379 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~-~~L~~~dGIlVPGG--FG~--RGi-e-GkI~Ai~yARen~iP~L 379 (544)
|.-|..||++.|+...+-. + . +.+..+|.|++||= |+. +.+ | |-+..++-.+.++.|+|
T Consensus 15 yrGV~~Al~~~G~~~~v~~-------------~-~y~~~~~aD~l~LPGVG~F~~aM~~l~~~~~~~~~~~~~~~~~P~l 80 (211)
T TIGR01855 15 YRGVKRALKRVGAEPVVVK-------------D-SYKELEKADKLILPGVGAFKAAMARLRELGLLDLLELVVKKKKPVL 80 (211)
T ss_pred HHHHHHHHHHCCCEEEEEC-------------C-CCHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999984498179962-------------8-6034310686785785888999999885005878899996189689
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHC-CCCCCCCEECCCHHCCCCCCCC---CCCCCCCCCEEEECCEEEEECCCC--
Q ss_conf 3557699999999875168899970003-5666641211501123465300---156554674023165257855870--
Q gi|254780195|r 380 GICFGMQMAVIEAARNLAGIPNACSTEF-SEAGVPVIALMSEWMKGDQQEK---RLPSDDLGATMRLGAYDVSLKEET-- 453 (544)
Q Consensus 380 GIClGmQ~avIEfARnvlgl~dAnStEf-~~~~~pvI~~l~e~~~~~~~~~---~~~~~~~GGTMRLG~~~~~l~~~S-- 453 (544)
|||||||++ -..|+|+ +.+ +-..+++.....-.... ..+..+||+. .+.+..+|
T Consensus 81 GiCLGMQLL------------fe~SeE~g~~~--~GLG~i~G~V~k~~~~~~~~~lk~PHmGWN------~v~~~~~~C~ 140 (211)
T TIGR01855 81 GICLGMQLL------------FERSEEGGGEV--PGLGLIKGKVVKLEARVSLSKLKVPHMGWN------EVEPVKESCP 140 (211)
T ss_pred EEEHHHHHH------------HCCCCCCCCCC--CCCEECCCEEEEECCCCCCCCCCCCCCCCC------EEEEHHHCCC
T ss_conf 998023430------------01562437886--653112761342056778872545756564------2312311551
Q ss_pred HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 66886379847660252333278899899978959999869998689998389984999724877327876988415899
Q gi|254780195|r 454 LISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSF 533 (544)
Q Consensus 454 ~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~f 533 (544)
++..|=.....+ +=|.|-+-+. ++......-.+--...+=+|+..+ ++|+||||| ||-- .--.|+..|
T Consensus 141 ll~g~~~~~~~Y--FVHSY~~~~~-----~~S~~v~a~~~YG~~F~AaV~~~n---~~G~QFHPE-KS~~-~G~~lL~nf 208 (211)
T TIGR01855 141 LLKGIDKGAYFY--FVHSYYAVCE-----EESEAVLAKADYGEKFTAAVQKDN---IFGTQFHPE-KSGK-TGLKLLKNF 208 (211)
T ss_pred HHCCCCCCCCEE--EEEEEEEECC-----CCHHHEEEEHHCCCCEEEEEECCC---EEEEEECCH-HHHH-HHHHHHHHH
T ss_conf 130776678155--6886677616-----881150112001863044665487---899972856-8888-999999998
Q ss_pred H
Q ss_conf 9
Q gi|254780195|r 534 I 534 (544)
Q Consensus 534 i 534 (544)
+
T Consensus 209 ~ 209 (211)
T TIGR01855 209 L 209 (211)
T ss_pred H
T ss_conf 5
No 46
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=99.43 E-value=2.6e-12 Score=109.42 Aligned_cols=179 Identities=14% Similarity=0.149 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 48134688888888887873672416772256567234456621698399737778655016888998874047632235
Q gi|254780195|r 302 HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 302 ~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGI 381 (544)
+.-|+|--.+ .|.=.++++.+++.-. +++. ...+.+++||++-||=|.--..+.+..+--.-..++|.|||
T Consensus 9 D~~dsfT~ni---~~~lr~lg~~~~v~~~--~~~~----~~~~~~~~~IIlSpGPg~p~~~~~~~~~i~~~~~~~PILGI 79 (191)
T PRK06895 9 NNHDSFTFNL---VDLIRKLGVPMKVVNV--EDLD----LDEVENFSHILISPGPDVPRAYPQLFAMLERYYQQKSILGV 79 (191)
T ss_pred ECCCHHHHHH---HHHHHHCCCEEEEEEC--CCCC----HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 6988489999---9999877996999847--8489----98985589699908999801052249999986068987898
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCC
Q ss_conf 57699999999875168899970003566664121150112346530015655467402316525785587066886379
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGL 461 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~ 461 (544)
|||||+++..|--.|-..+ ..+ .|. ...+....++.+.+-...
T Consensus 80 ClG~Q~i~~~~Gg~v~~~~---~~~-----------------------------hG~-----~~~i~~~~~~~lf~g~~~ 122 (191)
T PRK06895 80 CLGHQTLCEFFGGTLYNLE---NVR-----------------------------HGQ-----QRTLKVRSNSPLFDGLPE 122 (191)
T ss_pred CHHHHHHHHHHCCEEEECC---CCE-----------------------------EEE-----EEEEEECCCCCCCCCCCC
T ss_conf 2999999998295799688---745-----------------------------522-----789999189834658999
Q ss_pred C-EEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8-4766025233327889989997895999986999868999838998499972487732787698841589999
Q gi|254780195|r 462 D-LIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 462 ~-~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
. .+. | .|.+.+...-. ..++.++|.+.++ .+.+++-++.|+ .|||||||-.-++ ...-++..|++
T Consensus 123 ~~~v~-~-yHs~~v~~~~l----p~~~~v~a~~~~~-~i~a~~h~~~~i-~GvQFHPEs~~T~-~G~~il~NFl~ 188 (191)
T PRK06895 123 EFNIG-L-YHSWAVSQENF----PTPLEITAVCDEE-VVMAFQHKHLPI-YGVQFHPESYISE-FGEQILRNWLA 188 (191)
T ss_pred CEEEE-E-EEEEEEECCCC----CCCEEEEEECCCC-EEEEEEECCCCE-EEEEECCCCCCCC-CHHHHHHHHHC
T ss_conf 74876-6-67778760578----9746999975998-099888489989-9998288468887-85999999865
No 47
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.42 E-value=1.7e-12 Score=110.80 Aligned_cols=182 Identities=19% Similarity=0.238 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHH-HHHHHHHHCCCCCHHHHH
Q ss_conf 1346888888888878736724167722565672344566216983997377786550168-889988740476322355
Q gi|254780195|r 304 KDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGK-IAAIKFARENKIPFLGIC 382 (544)
Q Consensus 304 ~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGk-I~Ai~yARen~iP~LGIC 382 (544)
-|.|=|-.--|.|.=...++.+.+..-|.-.+++ . +.+ +.|||++-||=|.---.|. +..++. -..++|+||||
T Consensus 5 iDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~--i-~~~-~p~~ivLSpGPG~P~~~~~~~~~i~~-~~~~iPILGIC 79 (191)
T PRK06774 5 IDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTD--I-EQL-APSHVVISPGPCTPNEAGISLAVIRH-FADKLPILGVC 79 (191)
T ss_pred EECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHH--H-HHC-CCCEEEECCCCCCHHHHCCHHHHHHH-HCCCCCEEEEH
T ss_conf 9699976999999998779959998699889999--9-853-99969999999896790730689997-44699788616
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCC
Q ss_conf 76999999998751688999700035666641211501123465300156554674023165257855870668863798
Q gi|254780195|r 383 FGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLD 462 (544)
Q Consensus 383 lGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~ 462 (544)
||||++.-.|--.|-. +...|+ |.+ ..+......+...+....
T Consensus 80 lG~Q~ia~~~Gg~v~~---~~~~~h-----------------------------G~~-----~~i~~~~~~lf~g~~~~~ 122 (191)
T PRK06774 80 LGHQALGQAFGARVVR---ARQVMH-----------------------------GKT-----SAICHSGQGVFRGLNQPL 122 (191)
T ss_pred HHHHHHHHHCCCEEEE---CCCCEE-----------------------------CEE-----EEEEECCCCCCCCCCCCC
T ss_conf 8799986560984928---997475-----------------------------703-----689989987606899986
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC---EEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 47660252333278899899978959999869998---68999838998499972487732787698841589999
Q gi|254780195|r 463 LIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHA---LPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 463 ~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~---lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
.+. |+ |.+.++.+ .+ ..++.++|++++.. .+.+++-++.|+| |||||||-.-++. -.-++..|++
T Consensus 123 ~v~-~~-Hs~~v~~~---~l-p~~~~v~a~s~~~~~~~~i~ai~~~~~~i~-GVQFHPEs~~T~~-G~~il~NFl~ 190 (191)
T PRK06774 123 TVT-RY-HSLVIATD---SL-PGCFELTAWTERGGEMDEIMGIRHRTLPLE-GVQFHPESILSEQ-GHQLLDNFLK 190 (191)
T ss_pred EEE-EC-CCEEEEEC---CC-CCCEEEEEEECCCCCCCEEEEEEECCCCEE-EEEECCCCCCCCC-HHHHHHHHHC
T ss_conf 885-04-65078834---48-998799999799999886888883899989-9876898899958-8899999844
No 48
>PRK13174 consensus
Probab=99.42 E-value=1.4e-12 Score=111.32 Aligned_cols=178 Identities=23% Similarity=0.331 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC-C-CC-------CCCCHHHHHHHHHHHCCCCC
Q ss_conf 688888888887873672416772256567234456621698399737-7-78-------65501688899887404763
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FG-------KRGSEGKIAAIKFARENKIP 377 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG-G-FG-------~RGieGkI~Ai~yARen~iP 377 (544)
-.||..||++.++. ...|. ++ .+.++++|.|++|| | |+ .+|.+ ..++.. .++.|
T Consensus 14 i~Sv~~al~~~g~~------~~~i~------~~-~~~i~~~d~lIlPGVGsf~~~m~~L~~~~~~---~~i~~~-~~~kp 76 (212)
T PRK13174 14 LHSVAKALEHVGAG------RVLVT------SD-AAVIREADRVVFPGVGAIRDCMAEIRRLGFD---SLVREV-SQDRP 76 (212)
T ss_pred HHHHHHHHHHCCCC------EEEEC------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHCCHH---HHHHHH-HCCCC
T ss_conf 99999999974998------79983------89-8999638979965888689999998876969---999999-74998
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCC-----CCCCCCCCCCCCCCEEEECCEEEEECCC
Q ss_conf 22355769999999987516889997000356666412115011234-----6530015655467402316525785587
Q gi|254780195|r 378 FLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKG-----DQQEKRLPSDDLGATMRLGAYDVSLKEE 452 (544)
Q Consensus 378 ~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~-----~~~~~~~~~~~~GGTMRLG~~~~~l~~~ 452 (544)
+||||||||++. ..|+|+..+. -..+++-.... .....+....++|. ..+....+
T Consensus 77 iLGICLGMQlL~------------~~s~E~g~~~--GLgli~G~V~~~~~~~~~~~~~~kiPhiGW------n~i~~~~~ 136 (212)
T PRK13174 77 FLGICVGMQALL------------ERSEENGGVD--CIGLFPGQVRFFGKDLHEDGEHLKVPHMGW------NQVSQAVD 136 (212)
T ss_pred EEEEEHHHHHHH------------HCCCCCCCCC--CCCCCCEEEEECCCCCCCCCCCCCCCEECC------EEEEECCC
T ss_conf 799808899876------------1754789877--533635079986755565554556755001------24760688
Q ss_pred CH-HHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHH
Q ss_conf 06-6886379847660252333278899899978959999869-998689998389984999724877327876988415
Q gi|254780195|r 453 TL-ISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSV-DHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLF 530 (544)
Q Consensus 453 S~-~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~-d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF 530 (544)
+. ...+-..... -+.|.|.+++.- + ..+.+... ....+-+|+-.+ .+||||||| ||-. .---|+
T Consensus 137 ~~l~~~~~~~~~f--YFvHSY~~~~~~-----~--~~~~a~t~~g~~f~a~v~k~N---i~G~QFHPE-KS~~-~Gl~lL 202 (212)
T PRK13174 137 HPLWHDIPDLARF--YFVHSYYIEAGN-----P--RQVVGRGHYGVDFAAALADGS---RFAVQFHPE-KSHT-HGLQLL 202 (212)
T ss_pred CCHHCCCCCCCEE--EEEEEEEECCCC-----H--HCEEEEEECCCEEEEEEEECC---EEEECCCCC-CCCH-HHHHHH
T ss_conf 8121067765759--987566752698-----2--038999989988999998499---999908910-0577-589999
Q ss_pred HHHHH
Q ss_conf 89999
Q gi|254780195|r 531 VSFIQ 535 (544)
Q Consensus 531 ~~fi~ 535 (544)
..|+.
T Consensus 203 knFi~ 207 (212)
T PRK13174 203 QNFAA 207 (212)
T ss_pred HHHHH
T ss_conf 99983
No 49
>PRK13148 consensus
Probab=99.41 E-value=4.7e-13 Score=114.74 Aligned_cols=181 Identities=22% Similarity=0.305 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCC--HHHHHHHHHHHCCCCCHHH
Q ss_conf 6888888888878736724167722565672344566216983997377--786--550--1688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGS--EGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGi--eGkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.|... ++..+ ++ .+.++++|.|++||= |+. +.. .|...+++.+- ++.|+||
T Consensus 14 l~Sv~~al~~~g~~~----~~~i~-------~~-~~~i~~~d~lILPGVGsF~~am~~L~~~~l~~~i~~~~-~~kpiLG 80 (225)
T PRK13148 14 FHSVARALQHAAPDA----DIRIC-------NR-PEQIDAADRVVFPGQGAMPDCMRTLNESGLRAAVERAA-ASKPLMG 80 (225)
T ss_pred HHHHHHHHHHHCCCC----CEEEE-------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHH-CCCCEEE
T ss_conf 999999999857897----39998-------99-99995499799899788799999988648799999986-3898699
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCC--------------------CCCCCCCCCCCCCCCEE
Q ss_conf 5576999999998751688999700035666641211501123--------------------46530015655467402
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMK--------------------GDQQEKRLPSDDLGATM 440 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~--------------------~~~~~~~~~~~~~GGTM 440 (544)
||||||++.= .|+|-+ + +-..+++-... ......+....+||+
T Consensus 81 ICLGMQlLf~------------~SeEg~-~--~GLgli~G~V~kl~~~~~~~~~~~~~~~~~~~~~~~~~lkiPh~GW-- 143 (225)
T PRK13148 81 VCVGEQMLFE------------RSEEGD-T--PCLGIFPGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGW-- 143 (225)
T ss_pred EEHHHHHHHH------------CCCCCC-C--CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC--
T ss_conf 8277887662------------452269-7--7565587899981476545642112333455544354888888861--
Q ss_pred EECCEEEEECCCCHHH-HHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCC
Q ss_conf 3165257855870668-863798476602523332788998999789599998699986899983899849997248773
Q gi|254780195|r 441 RLGAYDVSLKEETLIS-RIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPEL 519 (544)
Q Consensus 441 RLG~~~~~l~~~S~~~-~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf 519 (544)
..+.....+.+. .+-..... -+-|.|.+.+. +....++-.+-....+-+|+-.+ .+|||||||
T Consensus 144 ----n~v~~~~~~~l~~~i~~~~~f--YFvHSY~~~~~------~~~~~~a~t~yg~~f~s~v~~~N---i~G~QFHPE- 207 (225)
T PRK13148 144 ----NQVRQTRSHALWEGIPDGTHF--YFVHSYYAAPS------DPALTTGVTDYGVAFTCAVAAAN---IFAVQFHPE- 207 (225)
T ss_pred ----CEEECCCCCCHHCCCCCCCEE--EEEEEEEECCC------CCCCEEEEEECCCEEEEEEEECC---EEEEECCHH-
T ss_conf ----203778997121266778706--88754563168------81558999858998999999699---999908812-
Q ss_pred CCCCCCCCHHHHHHH
Q ss_conf 278769884158999
Q gi|254780195|r 520 KSRPLDPHPLFVSFI 534 (544)
Q Consensus 520 ~Srp~~phPLF~~fi 534 (544)
||-. .---|+..|+
T Consensus 208 KS~~-~Gl~lLknFl 221 (225)
T PRK13148 208 KSAE-HGLRLYRNFV 221 (225)
T ss_pred HHCH-HHHHHHHHHH
T ss_conf 3157-7999999987
No 50
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.41 E-value=3.8e-13 Score=115.37 Aligned_cols=79 Identities=23% Similarity=0.442 Sum_probs=52.4
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCC-C--CC--CHHHHH
Q ss_conf 799995200148134688888888887873672416772256567234456621698399737778-6--55--016888
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFG-K--RG--SEGKIA 366 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG-~--RG--ieGkI~ 366 (544)
++||++ +++-...|+..||+.+|+. ..++ .+ .+.|.++|++++|||-- . +- --|-+.
T Consensus 2 ~~IGvl----~~qGn~rs~~~aL~~lG~~------~~~v-------~~-~~di~~ad~lILPGG~s~am~~ll~~~gl~~ 63 (191)
T PRK13525 2 MKIGVL----ALQGAVREHIAALEALGAE------AVEV-------RR-PEDLDEIDGLILPGGESTTMGKLLRDFGLLE 63 (191)
T ss_pred CEEEEE----ECCCCHHHHHHHHHHCCCC------EEEE-------CC-HHHHHHCCEEEECCCCHHHHHHHHHHCCCHH
T ss_conf 379999----6478899999999987997------8998-------99-9999539989978976589999999868689
Q ss_pred HHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9988740476322355769999
Q gi|254780195|r 367 AIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 367 Ai~yARen~iP~LGIClGmQ~a 388 (544)
+++=.-..+.|+||||+|||+.
T Consensus 64 ~i~~~i~~gkP~LGIClGmqLL 85 (191)
T PRK13525 64 PLREFIASGLPVFGTCAGMILL 85 (191)
T ss_pred HHHHHHHCCCCEEEECHHHHEE
T ss_conf 9999998499857622212111
No 51
>PRK13178 consensus
Probab=99.40 E-value=7.5e-13 Score=113.28 Aligned_cols=185 Identities=20% Similarity=0.230 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCCCCCH-----HHHHHHHHHHCCCCCHH
Q ss_conf 6888888888878736724167722565672344566216983997377--7865501-----68889988740476322
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGKRGSE-----GKIAAIKFARENKIPFL 379 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~RGie-----GkI~Ai~yARen~iP~L 379 (544)
-.||..||++++. ++.| + ++ .+.++++|++++||. |+. +++ |...++.-..+++.|+|
T Consensus 12 i~Sv~~al~~lg~----~~~i--~-------~~-~~~i~~~d~lIlPGVGsf~~-~m~~L~~~~l~~~i~~~~~~gkpiL 76 (213)
T PRK13178 12 QTSVRRALNHLGI----PCVI--T-------AD-PEVIQGAAGIIFPGVGAAGQ-AMNELRTTGLDEVLREQVQAGKPLL 76 (213)
T ss_pred HHHHHHHHHHCCC----CEEE--E-------CC-HHHHHHCCEEEECCCCCHHH-HHHHHHHCCHHHHHHHHHHCCCCEE
T ss_conf 9999999998699----9899--7-------79-99994399899899885699-9998750062899998743699579
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCC------CCCCCCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 355769999999987516889997000356666412115011234------65300156554674023165257855870
Q gi|254780195|r 380 GICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKG------DQQEKRLPSDDLGATMRLGAYDVSLKEET 453 (544)
Q Consensus 380 GIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~------~~~~~~~~~~~~GGTMRLG~~~~~l~~~S 453 (544)
|||||||++. ..|+|-+ + +-..+++-.... +....+....++|. ..+....++
T Consensus 77 GIClGmQlLf------------~~seE~~-~--~GLgli~G~v~~l~~~~~~~~~~~~kvPhiGW------n~i~~~~~~ 135 (213)
T PRK13178 77 GICVGCQIML------------DYSQEND-T--KCLGIIPGECRLFNPALTDEDGAPIRVPHMGW------NSVVQRRPC 135 (213)
T ss_pred EEEHHHEEEE------------CCCCCCC-C--CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC------EEEEECCCC
T ss_conf 9842455554------------1442454-2--24675610699888543443477756772122------127717998
Q ss_pred H-HHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 6-688637984766025233327889989997895999986999868999838998499972487732787698841589
Q gi|254780195|r 454 L-ISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVS 532 (544)
Q Consensus 454 ~-~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~ 532 (544)
. ...+-..... -+.|.|-++++ ....++-..-....+-+++-. =.+||||||| ||.. .---|+..
T Consensus 136 ~l~~~~~~~~~f--YFvHSY~~~~~-------~~~~ia~t~yg~~f~a~v~k~---Ni~G~QFHPE-KSg~-~Gl~lLkn 201 (213)
T PRK13178 136 PLFKGIEPEAEF--YFVHSYFPAPP-------EEYVIATTTYGIEFCSAHGGP---GLWAVQFHPE-KSGR-PGLRLLAN 201 (213)
T ss_pred CCCCCCCCCCEE--EEEEEEEECCC-------CCCEEEEEECCCEEEEEEEEC---CEEEEECCCC-CCCH-HHHHHHHH
T ss_conf 522456777879--99868985389-------864899997899799999809---9999919953-1688-69999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999876
Q gi|254780195|r 533 FIQATVLYS 541 (544)
Q Consensus 533 fi~Aal~~~ 541 (544)
|++-|-+-.
T Consensus 202 F~~~~~~~~ 210 (213)
T PRK13178 202 FHRYCTEAA 210 (213)
T ss_pred HHHHHHHHC
T ss_conf 999987650
No 52
>PRK13144 consensus
Probab=99.39 E-value=1.9e-12 Score=110.44 Aligned_cols=176 Identities=19% Similarity=0.248 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC--CCCCCCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 4688888888887873672416772256567234456621698399737--77865501688899887404763223557
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG--GFGKRGSEGKIAAIKFARENKIPFLGICF 383 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG--GFG~RGieGkI~Ai~yARen~iP~LGICl 383 (544)
-..||..||++.+... ..+ ++ .+.++++|++++|| -|+. .-.++...+-+-. +.|+|||||
T Consensus 12 Ni~Sv~~al~~~g~~~------~i~-------~~-~~~i~~~d~lIlPGVGsf~~--a~~~~~~~~~~i~-~kpiLGICl 74 (190)
T PRK13144 12 NIGSVLAALKRAGAEP------VVV-------KE-PEEANRVDALVLPGVGTYEA--AYALARSFKEVIL-EKPTLAICL 74 (190)
T ss_pred HHHHHHHHHHHCCCCE------EEE-------CC-HHHHHHCCEEEECCCCCHHH--HHHHHHHHHHHHH-CCCEEEEEH
T ss_conf 8999999999849986------997-------89-99995489789748885999--9999999999974-798489876
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCE
Q ss_conf 69999999987516889997000356666412115011234653001565546740231652578558706688637984
Q gi|254780195|r 384 GMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDL 463 (544)
Q Consensus 384 GmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~ 463 (544)
|||++. + .|+|-+..+ ..+++-....-. .....++|. ..+.....+.. .....
T Consensus 75 GmQlL~-----------~-~seE~~~~G---Lgli~G~v~kl~---~~kvPh~GW------n~v~~~~~~~~---~~~~~ 127 (190)
T PRK13144 75 GMQLLF-----------E-SSEEGGGRG---LGIFRGRVERIK---ARKVPHIGW------SYTRVVKPLPF---VEEGY 127 (190)
T ss_pred HHHHHH-----------C-CCCCCCCCC---EEEEEEEEEECC---CCCCCEECC------CEEECCCCCCC---CCCCE
T ss_conf 588664-----------4-563347876---307976999878---888876366------00034678876---44555
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 766025233327889989997895999986999868999838998499972487732787698841589999999
Q gi|254780195|r 464 IPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATV 538 (544)
Q Consensus 464 I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal 538 (544)
. -+.|.|.++++ .....++-.+-+.+.+-+|+-.+ .+||||||| ||-. .--.|...||.+..
T Consensus 128 f--YFvHSY~~~~~------~~~~~~~~~~~g~~~~s~v~~~N---i~G~QFHPE-KS~~-~Gl~lLknFl~~~~ 189 (190)
T PRK13144 128 Y--YYLHSYGVRWD------EDEAHVAYVELGRRYVAAVEKGH---ILGVQFHPE-RSGR-AGLELIRRFLAAWR 189 (190)
T ss_pred E--EEEEEEEECCC------CCCCEEEEEECCCEEEEEEEECC---EEEEECCCH-HCCH-HHHHHHHHHHHHHH
T ss_conf 9--99998872268------87648999975997899999598---999978800-2158-68999999999953
No 53
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.39 E-value=1.1e-12 Score=112.08 Aligned_cols=175 Identities=21% Similarity=0.324 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHC-CCCEEEECCCCCCC-CCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 88888888887873672416772256567234456621-69839973777865-50168889988740476322355769
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFY-GVHGILVPGGFGKR-GSEGKIAAIKFARENKIPFLGICFGM 385 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~-~~dGIlVPGGFG~R-GieGkI~Ai~yARen~iP~LGIClGm 385 (544)
.+|+..|.- ...++..+.+.. ++++.++ +.|||++-.|=|+= -....|..++-.- .++|.||||||-
T Consensus 179 ~nIlr~L~~------rg~~V~VvP~~~----~~~~i~~~~pDGiflSNGPGDP~~~~~~i~~vr~l~-~~~PifGICLGH 247 (356)
T PRK12838 179 HSILRSLSK------RGCNVTVLPYNA----SLEDIKNLNPDGIVLSNGPGDPKELQPYLPTIKDLA-SSYPILGICLGH 247 (356)
T ss_pred HHHHHHHHH------CCCEEEEECCCC----CCCHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHH
T ss_conf 999999997------898899989988----754023249748994389989688788999999997-498889974889
Q ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEE
Q ss_conf 99999998751688999700035666641211501123465300156554674023165257855870668863798476
Q gi|254780195|r 386 QMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIP 465 (544)
Q Consensus 386 Q~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ 465 (544)
|++...+--..-.++-.| .-.-+||.++.+ | +-.|.
T Consensus 248 QllalA~Gakt~KmkfGH----rG~NhPV~~~~t--------------------------------g--------kv~IT 283 (356)
T PRK12838 248 QLIALALGAETYKLPFGH----RGANHPVIDLAT--------------------------------G--------RVWMT 283 (356)
T ss_pred HHHHHHHCCEEEECCCCC----CCCCCCCEECCC--------------------------------C--------CEEEE
T ss_conf 999997097486415566----887826477689--------------------------------9--------48997
Q ss_pred EECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 60252333278899899978959999869998689998389984999724877327876988415899999998764
Q gi|254780195|r 466 ERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQ 542 (544)
Q Consensus 466 ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~ 542 (544)
-+.|-|.|.++- |...++.++-++.+.+-+|.+..++.|+ ..||||||=.-=|.+...||..|++.--+.|+
T Consensus 284 -SQNHGyaVd~~s---l~~~~~~vt~~nlnD~tveGi~~~~~p~-fsVQfHPEa~PGP~D~~~lF~~F~~~~~~~k~ 355 (356)
T PRK12838 284 -SQNHGYVVDEDS---IDEKQLSVTFFNLNDGSIEGLRHKKLPV-LSVQFHPEAHPGPHDAEYIFDEFLEMMGEARR 355 (356)
T ss_pred -ECCCCCEECCCC---CCCCCEEEEEECCCCCCEEEEEECCCCE-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf -268761677676---8988659999908999661079889986-88712889998987438899999999998736
No 54
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.38 E-value=3.5e-12 Score=108.43 Aligned_cols=175 Identities=21% Similarity=0.283 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCC--HHHHHHHHHHHCCCCCHHH
Q ss_conf 6888888888878736724167722565672344566216983997377--786--550--1688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGS--EGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGi--eGkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.+. ++.| + ++ .+.++++|.|++||- |+. +.. .|-+.++ ++.+.|+||
T Consensus 13 i~Sv~~al~~lg~----~~~i--~-------~~-~~~i~~~d~lILPGVGsF~~am~~L~~~~l~~~i---~~~~kpiLG 75 (196)
T PRK13170 13 LSSVKFAFERLGY----NPVV--S-------RD-PDVILAADKLFLPGVGTAQAAMDQLRERELIELI---KACTQPVLG 75 (196)
T ss_pred HHHHHHHHHHCCC----CEEE--E-------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEE
T ss_conf 9999999998799----7999--6-------79-8998438979971899889999999873568999---970897488
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH-
Q ss_conf 5576999999998751688999700035666641211501123465300156554674023165257855870668863-
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY- 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY- 459 (544)
||||||++ --.|+|+..+.- ..+++-....- ........++|+ ..+.+.+++.+.+-.
T Consensus 76 ICLGMQlL------------~~~S~E~g~~~G--Lgli~G~V~kl-~~~~~~vPhiGW------n~i~~~~~~~l~~~i~ 134 (196)
T PRK13170 76 ICLGMQLL------------GRRSEESGGVDC--LGIIDGDVPKL-TDFGLPLPHMGW------NQVTPQAGHPLFQGIE 134 (196)
T ss_pred EEEEEEEE------------EECCCCCCCCCC--CEEEEEEEEEC-CCCCCCCCEEEE------EEEEECCCCHHHCCCC
T ss_conf 88003134------------635536898660--00542299997-767887744214------8887358987664988
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7984766025233327889989997895999986999-868999838998499972487732787698841589999
Q gi|254780195|r 460 GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDH-ALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 460 g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~-~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
..... -+-|.|.+.+. + -.+ +.+..| ..+-+|+-.+ .+||||||| ||.. .--.|...|++
T Consensus 135 ~~~~f--YFvHSY~~~~~------~--~~i-a~t~yg~~f~s~v~~~N---i~G~QFHPE-KS~~-~Gl~lLknFl~ 195 (196)
T PRK13170 135 DGSYF--YFVHSYAMPVN------P--YTI-AQCNYGEPFSAAIQKDN---FYGVQFHPE-RSGA-AGAQLLKNFLE 195 (196)
T ss_pred CCCEE--EEEEEEEECCC------C--CEE-EEEECCCEEEEEEEECC---EEEEECCCC-CCCH-HHHHHHHHHHC
T ss_conf 58879--99877870688------8--889-99978998999997199---999968920-0678-48999999961
No 55
>PRK13180 consensus
Probab=99.38 E-value=6.2e-13 Score=113.86 Aligned_cols=185 Identities=21% Similarity=0.205 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECC--CCCC--CCC--HHHHHHHHHHHCCCCCHHH
Q ss_conf 688888888887873672416772256567234456621698399737--7786--550--1688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG--GFGK--RGS--EGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPG--GFG~--RGi--eGkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.++ ++ ..+ ++ .+.++++|++++|| .|+. +.. .+....++-...+++|+||
T Consensus 14 i~Sv~~al~~~g~----~~--~i~-------~~-~~~~~~~d~lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~~gkpiLG 79 (209)
T PRK13180 14 LRSAQRALERVGA----EV--EVT-------AD-PDAALNADGLVVPGVGAFAACMAGLRAVGGDRIIGERLAAGRPVLG 79 (209)
T ss_pred HHHHHHHHHHCCC----CE--EEE-------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999998699----89--997-------99-9999538968999988557777765536919999999976998799
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH
Q ss_conf 5576999999998751688999700035-666641211501123465300156554674023165257855870668863
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFS-EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~-~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY 459 (544)
||+|||++. ..|.|++ ++. -..+++-....- ......++|+ ..+...+++.+.+-.
T Consensus 80 IClGMQlL~------------~~s~E~g~~~~--GLg~i~G~v~~l---~~~~vPh~GW------n~v~~~~~~~l~~~i 136 (209)
T PRK13180 80 ICVGMQILF------------ERGVEHGVETE--GCGEWPGTVERL---DAPVLPHMGW------NTVEAPAGSVLFAGL 136 (209)
T ss_pred EEEHEEEEE------------ECEECCCCCCC--CCCEECCEEEEC---CCCCCCCCCC------EEEECCCCCHHHHCC
T ss_conf 841208887------------03111676778--813655089977---8887873565------577706776354088
Q ss_pred C-CCEEEEECCCCCCCCHHHHHHHHH-CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7-984766025233327889989997-895999986999868999838998499972487732787698841589999
Q gi|254780195|r 460 G-LDLIPERHRHRYEVNVRYREKLEG-CGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 460 g-~~~I~ERHRHRYEvN~~y~~~le~-~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
. .... -+-|.|.++..-.+.... ..-.++...-....+-+|+-.+ .+||||||| ||-. .--.++..|+.
T Consensus 137 ~~~~~f--YFvHSy~v~~~~~~~~~~~~~~~~~~~~~g~~~~aav~~~n---i~G~QFHPE-KS~~-~Gl~ll~nFl~ 207 (209)
T PRK13180 137 DADERF--YFVHSYAAQRWEGSPDPRTAPPLVTWATHGAPFVAAVENGP---LSATQFHPE-KSGD-AGAALLRNWVD 207 (209)
T ss_pred CCCCCE--EEECEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCC---EEEEECCCC-CCCH-HHHHHHHHHHH
T ss_conf 858958--89685266345655565665535899847982699998299---999939963-2677-38999999986
No 56
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.37 E-value=1.2e-09 Score=90.07 Aligned_cols=407 Identities=17% Similarity=0.199 Sum_probs=194.5
Q ss_pred EEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 99375014444489999999999968982889854455334888888644350787279840025564113322874775
Q gi|254780195|r 6 FITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTAK 85 (544)
Q Consensus 6 ~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~~ 85 (544)
++..|--||.||-++++.|.+.|+.||++|..-|.-|=- +| |--|..+ + |.--|=||.
T Consensus 6 lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~GPDy-Id-----p~~~~~a--~----------g~~~~nLD~---- 63 (451)
T PRK01077 6 LVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDY-ID-----PAFHAAA--T----------GRPSRNLDS---- 63 (451)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CC-----HHHHHHH--H----------CCCCCCCCH----
T ss_conf 999868999978999999999999687945753578576-29-----8999999--7----------897535883----
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECC-----CCCCCCC-CCHHHHHHHHH
Q ss_conf 46801258999999888577757740256460248989999707889878999724-----3122212-30689999999
Q gi|254780195|r 86 ADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIG-----GTIGDIE-VMPFVEAIRQF 159 (544)
Q Consensus 86 ~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiG-----GTVGDIE-s~pFlEAiRQl 159 (544)
+-.|+ +.+++...+.++++|++|||=- |..++-+ +.+ -++
T Consensus 64 ---~l~~~--------------------------~~v~~~~~~~~~~~D~~viEG~mGlyDG~~~~~~~gS~-----aei 109 (451)
T PRK01077 64 ---WMMGE--------------------------DLVRALFARAAGGADIAVIEGVMGLFDGAGGDPDKGST-----ADI 109 (451)
T ss_pred ---HHCCH--------------------------HHHHHHHHHHCCCCCEEEEEECHHCCCCCCCCCCCCCH-----HHH
T ss_conf ---44899--------------------------99999999754668889985010113454567777778-----999
Q ss_pred HHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-----EEEEE--CCCCCCHHHHHHHHHHCCCC
Q ss_conf 987497768579999746754225662003478999999997499876-----89992--38758999999998641988
Q gi|254780195|r 160 GNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPD-----ILLIR--ADRDIPEMERRKISLFCNVP 232 (544)
Q Consensus 160 ~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPD-----iivcR--se~~l~~~~k~KIalfc~V~ 232 (544)
...++ --|++| +.+.+-.-| .-..|+.++.+ .|| +|+=| +++. .+-+++-|. -|+||
T Consensus 110 A~~l~---~PViLV-------iD~~~~~~s--~aa~v~G~~~~--~~~~~I~GvIlNk~~g~~h-~~ll~~~ie-~~gvp 173 (451)
T PRK01077 110 ARLLG---APVVLV-------VDASGMAQS--AAALVLGFARF--DPDLNIAGVILNRVGSERH-YQLLREALE-ELGLP 173 (451)
T ss_pred HHHHC---CCEEEE-------ECCCCHHHH--HHHHHHHHHHH--CCCCCEEEEEEECCCCHHH-HHHHHHHHH-HCCCC
T ss_conf 98709---988999-------846620899--99999999975--9778774899624787668-999999998-63995
Q ss_pred HHHEEECCCCCCHHHHHH-------HHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHH----------HHCCCCCCEEEE
Q ss_conf 677240389862026689-------887649488999983878888620478999998----------741843437999
Q gi|254780195|r 233 MSAVIPALDVDDIYKVPL-------SYHREGIDSVVLNAFGIENVSLPQIDNWQTFCD----------RTLSLKNEVKVA 295 (544)
Q Consensus 233 ~~~Vi~~~Dv~sIY~VPl-------~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~----------~~~~~~~~V~Ia 295 (544)
.=.++.-.+--+ +|- ..+.+.+...+ +++.-......|++.-..+.. ........++||
T Consensus 174 vlG~lP~~~~l~---lpeRHLGLv~~~E~~~~~~~~-~~~~~~~~~~id~~~l~~i~~~~~~~~~~~~~~~~~~~~~rIa 249 (451)
T PRK01077 174 VLGALPRDAALA---LPERHLGLVQASEIADLEARL-DALADLVEAHVDLDALLALARAAPAAPAPPPPLPTPPPGVRIA 249 (451)
T ss_pred EEEEECCCCCCC---CCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 798615763345---642125776704566689999-9999999861799999998504776676554444567897699
Q ss_pred EEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC------CHHHHHHHH
Q ss_conf 95200148134688888888887873672416772256567234456621698399737778655------016888998
Q gi|254780195|r 296 IVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG------SEGKIAAIK 369 (544)
Q Consensus 296 iVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RG------ieGkI~Ai~ 369 (544)
+.-. -.+.=-|..-+++|+.+| +++.++++-. + ...-.++|+|++||||.+-- -.+...+|+
T Consensus 250 va~D-~AF~FyY~enl~~L~~~G------ael~~fSPl~--d---~~lP~~~D~l~lpGGyPEl~a~~L~~n~~l~~~I~ 317 (451)
T PRK01077 250 VARD-AAFSFYYPDNLELLRAAG------AELVFFSPLA--D---EALPDDCDALYLGGGYPELFAAELAANTSMRASIR 317 (451)
T ss_pred EECC-CCCCCCCHHHHHHHHHCC------CEEEEECCCC--C---CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9434-224755766799999789------8899957767--8---88986678899579850243999987089999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEE
Q ss_conf 87404763223557699999999875168899970003566664121150112346530015655467402316525785
Q gi|254780195|r 370 FARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSL 449 (544)
Q Consensus 370 yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l 449 (544)
=+.+++.|.+|+|.|||+. .|.+ .|.+ ...+|...++|-..... ..-.++|-.....
T Consensus 318 ~~~~~G~pi~aeCGG~~~L----g~~i---~d~~-----G~~~~m~Gllp~~t~~~-----------~~~~~~GY~~~~~ 374 (451)
T PRK01077 318 AAAAAGKPIYAECGGLMYL----GESL---EDAD-----GERHPMVGLLPGEASMT-----------KRLAALGYREAEL 374 (451)
T ss_pred HHHHCCCCEEEECHHHHHH----HHHC---CCCC-----CCEEECCCCCCEEEEEC-----------CCCCCCCCEEEEE
T ss_conf 9998699789987117887----5432---7789-----98852435401377986-----------7855225469995
Q ss_pred CCCCHHHHHHCC-CEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC--EEEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 587066886379-847660252333278899899978959999869998--68999838998499972487732787698
Q gi|254780195|r 450 KEETLISRIYGL-DLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHA--LPEVVEYINHPWFIGVQYHPELKSRPLDP 526 (544)
Q Consensus 450 ~~~S~~~~iYg~-~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~--lvEiiEl~~HpffvgvQfHPEf~Srp~~p 526 (544)
..++...+- |. -.-.|=|+-+.+-++ .. ..+.-....+. -.+..-. .=-+|+..|-.|-|.|
T Consensus 375 ~~~~~~~~~-g~~i~GHEfHys~~~~~~-------~~-~~~~~~~~~g~~~~~~G~~~---~nv~asy~Hlh~~s~p--- 439 (451)
T PRK01077 375 LADTLLGAA-GERLRGHEFHYSTLEETP-------LE-PLYRVRDADGGPVGEGGYRR---GNVLASYLHLHFASNP--- 439 (451)
T ss_pred CCCCCCCCC-CCEEEEEEECCEECCCCC-------CC-EEEEEECCCCCCCCCCEEEE---CCEEEEEEEECCCCCH---
T ss_conf 489756679-978989854264641799-------87-00899868999888587997---9999996375268498---
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 8415899999998
Q gi|254780195|r 527 HPLFVSFIQATVL 539 (544)
Q Consensus 527 hPLF~~fi~Aal~ 539 (544)
.+...|+++|.+
T Consensus 440 -~~~~~fv~~~~~ 451 (451)
T PRK01077 440 -DAAARLLAAARR 451 (451)
T ss_pred -HHHHHHHHHHHC
T ss_conf -999999999509
No 57
>PRK13151 consensus
Probab=99.34 E-value=5.2e-13 Score=114.41 Aligned_cols=175 Identities=24% Similarity=0.395 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCCH--HHHHHHHHHHCCCCCHHH
Q ss_conf 6888888888878736724167722565672344566216983997377--786--5501--688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGSE--GKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGie--GkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.+.. +.+ + .+ .+.+.++|+|++||= |+. +... +.+ .+.+..+.|+||
T Consensus 13 i~Sv~~al~~lg~~----~~i--~-------~~-~~~i~~~d~lIlPGVGsf~~~m~~L~~~~l~---~~i~~~~kpiLG 75 (195)
T PRK13151 13 LASLKFCLDRLGFN----ATI--S-------RD-LKELESADKLFLPGVGTAKEAMKNLEQFNLI---DFIQNTKKPLLG 75 (195)
T ss_pred HHHHHHHHHHCCCC----EEE--E-------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCH---HHHHHCCCCEEE
T ss_conf 99999999985998----799--6-------79-9999448969988889999999999874778---889863996688
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC
Q ss_conf 55769999999987516889997000356666412115011234653001565546740231652578558706688637
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG 460 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg 460 (544)
||||||++ + -.|+|++..+-..+.--.+-. .........++|+. .+. ...++...+ .
T Consensus 76 ICLGMQlL--------~----~~seE~~~~gLgli~g~v~k~---~~~~~~~vPhiGWn------~v~-~~~~l~~~i-~ 132 (195)
T PRK13151 76 ICLGMQIL--------G----NFSEELNQETLKLIDFTTQKF---KAKEGFTFPHMGWN------QVH-SSHALFKGL-E 132 (195)
T ss_pred EEEEEEEE--------E----CCCCCCCCCCCCEEEEEEEEE---CCCCCCCCCEEEHH------HCC-CCCHHHCCC-C
T ss_conf 77647876--------5----147576757626420268886---46557888674112------256-677012166-6
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9847660252333278899899978959999869998689998389984999724877327876988415899999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
... =-+-|.|.+++ ++ ..++-..-....+-+|+-.+ .+||||||| ||-. .--.|...|++-
T Consensus 133 ~~~--fYFvHSY~~~~------~~--~~ia~~~y~~~f~a~v~k~N---i~G~QFHPE-KS~~-~Gl~lL~nFlk~ 193 (195)
T PRK13151 133 GAY--FYFVHSYCVGL------GE--YTIADCEYSQKFSASVMKDN---FYGVQFHPE-RSSE-AGEILISNFIKD 193 (195)
T ss_pred CCE--EEEEEEEECCC------CC--CEEEEEECCCEEEEEEEECC---EEEEECCCH-HCCH-HHHHHHHHHHHH
T ss_conf 762--78873045267------65--63789737988999999199---999928800-3058-799999999875
No 58
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.33 E-value=9.3e-12 Score=105.41 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHH-HHHHHHHCCCCCHHH
Q ss_conf 4813468888888888787367241677225656723445662169839973777865501688-899887404763223
Q gi|254780195|r 302 HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKI-AAIKFARENKIPFLG 380 (544)
Q Consensus 302 ~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI-~Ai~yARen~iP~LG 380 (544)
+.-|+|- .-|.|.=..+++.+++.--| ++..+. .+ -.+.+||++-||=|.=.-.|.. ..+++ -+.++|.||
T Consensus 6 Dn~DsfT---~ni~~~l~~lg~~v~vv~~d--~~~~~~-i~-~~~p~~IilS~GPg~p~~~~~~~~~~~~-~~~~iPILG 77 (192)
T PRK08857 6 DNYDSFT---YNLYQYFCELGAEVKVVRND--EIDIAG-IE-ALNPSHLVISPGPCTPNEAGISLQAIEH-FAGKLPILG 77 (192)
T ss_pred ECCCCHH---HHHHHHHHHCCCEEEEEECC--CCCHHH-HH-HCCCCEEEECCCCCCHHHCCCCHHHHHH-HCCCCCEEE
T ss_conf 7999779---99999998779928999699--899999-98-4297959998999996782861466997-357999899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC
Q ss_conf 55769999999987516889997000356666412115011234653001565546740231652578558706688637
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG 460 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg 460 (544)
||||||+++..|--.|...+ ..|+ |.+ ..+.....++...+ .
T Consensus 78 IClG~Q~ia~~~Gg~v~~~~---~~~h-----------------------------G~~-----~~i~~~~~~lf~~~-~ 119 (192)
T PRK08857 78 VCLGHQAIAQVFGGDVVRAR---QVMH-----------------------------GKT-----SPIRHTGRSVFKGL-N 119 (192)
T ss_pred ECHHHHHHHHHHCCEEEECC---CCEE-----------------------------EEE-----EEEEECCCEEEECC-C
T ss_conf 87999999998398299888---4325-----------------------------115-----79998993047369-9
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCC--CC--EEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98476602523332788998999789599998699--98--68999838998499972487732787698841589999
Q gi|254780195|r 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVD--HA--LPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535 (544)
Q Consensus 461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d--~~--lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~ 535 (544)
.....-|+ |-+.+..+- -..++.++++++. +. .+++++-++.|+| |||||||-.-++ ...-++..|+.
T Consensus 120 ~~~~v~~~-Hs~~v~~~~----lp~~~~v~a~t~~~~~~~~~i~a~~h~~~~i~-GVQFHPEs~~T~-~G~~il~NFl~ 191 (192)
T PRK08857 120 NPLTVTRY-HSLVVKNDT----LPECFELTAWTELEDGSMDEIMGFQHKTLPIE-AVQFHPESIKTE-QGHQLLANFLA 191 (192)
T ss_pred CCEEEEEC-CCEEEECCC----CCCCEEEEEEEECCCCCCCCEEEEEECCCCEE-EEEECCCCCCCC-CHHHHHHHHHC
T ss_conf 88798962-552789574----89982999997268899770538883899989-998779779984-74899999726
No 59
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.30 E-value=3.6e-11 Score=101.11 Aligned_cols=173 Identities=25% Similarity=0.371 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH-CCCCEEEECCCCCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 888888888787367241677225656723445662-16983997377786-5501688899887404763223557699
Q gi|254780195|r 309 SLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHF-YGVHGILVPGGFGK-RGSEGKIAAIKFARENKIPFLGICFGMQ 386 (544)
Q Consensus 309 Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L-~~~dGIlVPGGFG~-RGieGkI~Ai~yARen~iP~LGIClGmQ 386 (544)
+|+..|. ..++ ++.-+.+.. .+++.| .+.|||++--|=|+ .-.+-.|.+++---+.+||.||||||-|
T Consensus 192 nIlr~L~----~rg~--~vtVVP~~t----~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQ 261 (368)
T COG0505 192 NILRELV----KRGC--RVTVVPADT----SAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQ 261 (368)
T ss_pred HHHHHHH----HCCC--EEEEECCCC----CHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHH
T ss_conf 7999999----7798--499976989----99999851899799748998806778999999998646898378868889
Q ss_pred HHHHHHHHHCCCCCCCCHHHCC--CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEE
Q ss_conf 9999998751688999700035--66664121150112346530015655467402316525785587066886379847
Q gi|254780195|r 387 MAVIEAARNLAGIPNACSTEFS--EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLI 464 (544)
Q Consensus 387 ~avIEfARnvlgl~dAnStEf~--~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I 464 (544)
+....+--.-..++ |. -.-+||.++.+. .|. |
T Consensus 262 llalA~Ga~T~Kmk------FGHrG~NhPV~dl~tg-------------------------rv~---------------I 295 (368)
T COG0505 262 LLALALGAKTYKMK------FGHRGANHPVKDLDTG-------------------------RVY---------------I 295 (368)
T ss_pred HHHHHCCCCEEECC------CCCCCCCCCCCCCCCC-------------------------EEE---------------E
T ss_conf 99986678643203------6887789676316588-------------------------089---------------9
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 6602523332788998999789599998699986899983899849997248773278769884158999999987644
Q gi|254780195|r 465 PERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQS 543 (544)
Q Consensus 465 ~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~~ 543 (544)
--+.|-|.|-++ .+.+.. .++-++.+..-+|.++.++.|. +.||||||=..-|.+.+.||..|++..-.+++.
T Consensus 296 -TSQNHGyaVd~~---s~~~~~-~vth~nlnDgTvEGi~h~~~P~-fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~~ 368 (368)
T COG0505 296 -TSQNHGYAVDED---SLVETL-KVTHVNLNDGTVEGIRHKDLPA-FSVQYHPEASPGPHDTRYLFDEFIELMEAAKKE 368 (368)
T ss_pred -EECCCCEECCHH---HCCCCC-EEEEEECCCCCCCCEECCCCCE-EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf -946886013822---327776-0589817999700245279863-787148999989864477999999999875249
No 60
>PRK13172 consensus
Probab=99.29 E-value=5e-12 Score=107.31 Aligned_cols=182 Identities=21% Similarity=0.308 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCC--HHHHHHHHHHHCCCCCHHH
Q ss_conf 6888888888878736724167722565672344566216983997377--786--550--1688899887404763223
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGS--EGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGi--eGkI~Ai~yARen~iP~LG 380 (544)
-.||..||++.+ .+..+++ + .+.+.++|.|++||= |+. +.. -|-..+++-..+++.|+||
T Consensus 14 i~Sv~~al~~lg------~~~~i~~-------~-~~~i~~~d~lIlPGVGsF~~~m~~L~~~~l~~~i~~~~~~~kpiLG 79 (213)
T PRK13172 14 LLSVARAFQYFD------ASVNLVS-------T-PEEIMSADRLVLPGVGAFEDGMKGLTTLNFIEPIKQFARSGKPFLG 79 (213)
T ss_pred HHHHHHHHHHCC------CCEEEEC-------C-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 999999999869------9889977-------9-9998338978976878469999988723863789998765995799
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCC---CC-CCCCCCCCCCEEEECCEEEEECCCC---
Q ss_conf 5576999999998751688999700035666641211501123465---30-0156554674023165257855870---
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQ---QE-KRLPSDDLGATMRLGAYDVSLKEET--- 453 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~---~~-~~~~~~~~GGTMRLG~~~~~l~~~S--- 453 (544)
||||||++. -.|+|+..+. -..+++.....-. .. ......++|+. .+.....+
T Consensus 80 ICLGmQlLf------------~~s~E~g~~~--GLgli~G~v~kl~~~~~~~~~~kvPh~GWn------~i~~~~~~~~~ 139 (213)
T PRK13172 80 ICLGMQMML------------SKSTEFGQHE--GLGLIAGEVVSVPSHGVDGQLHKIPHIGWN------ELVSTSEGEDW 139 (213)
T ss_pred EEHHHHHHH------------HCCCCCCCCC--CCCEECCEEEECCCCCCCCCCCCCCEECHH------HEECCCCCCCC
T ss_conf 857666265------------3864687647--665755259877755666645627620144------53324554333
Q ss_pred ---HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC-EEEEEEECCCCEEEEEECCCCCCCCCCCCCHH
Q ss_conf ---66886379847660252333278899899978959999869998-68999838998499972487732787698841
Q gi|254780195|r 454 ---LISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHA-LPEVVEYINHPWFIGVQYHPELKSRPLDPHPL 529 (544)
Q Consensus 454 ---~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~-lvEiiEl~~HpffvgvQfHPEf~Srp~~phPL 529 (544)
++..+-..... -+-|.|.+.+.- ..-.++...-++. .+-+|+- .=.+||||||| ||-. .---|
T Consensus 140 ~~~l~~~~~~~~~f--YFvHSY~~~~~~------~~~~~a~~~y~g~~~~a~i~~---~Ni~G~QFHPE-KS~~-~Gl~l 206 (213)
T PRK13172 140 CHTILKNIPLNSSV--YFVHSFMAMPSN------PKKRLADTLYDGQAISAVIKD---ENMYGCQFHPE-KSGE-VGLSI 206 (213)
T ss_pred CCHHHCCCCCCCEE--EEEEEEEEECCC------CCCEEEEEEECCEEEEEEEEC---CCEEEEECCHH-HCCH-HHHHH
T ss_conf 43666189778617--999877885388------873899999899999999988---99999808802-2368-69999
Q ss_pred HHHHHH
Q ss_conf 589999
Q gi|254780195|r 530 FVSFIQ 535 (544)
Q Consensus 530 F~~fi~ 535 (544)
+..|++
T Consensus 207 L~nFl~ 212 (213)
T PRK13172 207 IQQFLQ 212 (213)
T ss_pred HHHHHC
T ss_conf 999972
No 61
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.29 E-value=5.8e-11 Score=99.69 Aligned_cols=185 Identities=21% Similarity=0.267 Sum_probs=99.3
Q ss_pred HCCCCHHHH--HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHH----HHHHC
Q ss_conf 014813468--888888888787367241677225656723445662169839973777865501688899----88740
Q gi|254780195|r 300 YIHLKDAYR--SLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAI----KFARE 373 (544)
Q Consensus 300 Y~~l~DaY~--Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai----~yARe 373 (544)
|-...++|+ |=.+-|+-| +.+|...|++... +...+.|+.++|||.|||-=.-...+-..++ ++|.|
T Consensus 13 ~~~~~~sYIaASYVK~lEsa----GArVVPI~~~~~~---~~~~~l~~~INGvLfpGG~~~~~~s~y~~~~~~i~~~A~e 85 (273)
T cd01747 13 SNKTGHSYIAASYVKFLESA----GARVVPIWINESE---EYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALE 85 (273)
T ss_pred CCCCCCEEEEHHHHHHHHHC----CCEEEEEECCCCH---HHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 56678747608989999978----9869987469998---9999998754679967866205667089999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEE
Q ss_conf 4-----76322355769999999987516889997000356666412115011234653001565546740231652578
Q gi|254780195|r 374 N-----KIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVS 448 (544)
Q Consensus 374 n-----~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~ 448 (544)
- --|.+|||||||++.+-.+-+- ---+.++.. + .-+|-....+..+ +.|=+
T Consensus 86 ~Nd~G~yFPiwGtCLGFelL~~~~s~~~-----~~l~~~~s~-n---~~~pL~ft~~~~~-----Srlf~---------- 141 (273)
T cd01747 86 RNDAGDYFPVWGTCLGFELLTYLTSGET-----LLLEATEAT-N---SALPLNFTEDALQ-----SRLFK---------- 141 (273)
T ss_pred HHCCCCCCCEEEEHHHHHHHHHHHCCCC-----CEECCCCCC-C---CCCCCCCCCCCCC-----CHHHH----------
T ss_conf 8508995633333030999999973996-----123102677-7---3301014467644-----63765----------
Q ss_pred ECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHH--HHCCCEEEEECCC--C-CEEEEEEECCCCEEEEEECCCC
Q ss_conf 5587066886379847660252333278899899--9789599998699--9-8689998389984999724877
Q gi|254780195|r 449 LKEETLISRIYGLDLIPERHRHRYEVNVRYREKL--EGCGLKFSGFSVD--H-ALPEVVEYINHPWFIGVQYHPE 518 (544)
Q Consensus 449 l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~l--e~~Gl~~sg~~~d--~-~lvEiiEl~~HpffvgvQfHPE 518 (544)
-.+..++..+-..... -|-|+|.+.|+.-..- -+.=+++.+++.| | .-|-++|-.+.||| |||||||
T Consensus 142 ~~~~~l~~~l~~~~~t--~n~H~~gitp~~f~~~~~L~~~f~ilstn~D~~g~eFVStiE~k~YP~y-g~QfHPE 213 (273)
T cd01747 142 RFPPDLLKSLATEPLT--MNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIY-GVQWHPE 213 (273)
T ss_pred CCCHHHHHHHHHCCCC--HHHHCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCCCCEE-EEEECCC
T ss_conf 1999999998507600--4330541678887456888744265687765999889886303247646-6740687
No 62
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.28 E-value=2.1e-11 Score=102.88 Aligned_cols=74 Identities=23% Similarity=0.491 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC-CCC--CCC--HHHHHHHHHHHCCC
Q ss_conf 1481346888888888878736724167722565672344566216983997377-786--550--16888998874047
Q gi|254780195|r 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG-FGK--RGS--EGKIAAIKFARENK 375 (544)
Q Consensus 301 ~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG-FG~--RGi--eGkI~Ai~yARen~ 375 (544)
..|+-...|+..||+..|+ +..++ .+ .+.|.++|++++||| |+. +.. .|...+++-+-..+
T Consensus 4 l~lqGn~~s~~~Al~~lG~------~~~~~-------~~-p~~i~~ad~LILPGg~s~~~~~~L~~~gl~~~i~~~i~~g 69 (183)
T cd01749 4 LALQGDFREHIRALERLGV------EVIEV-------RT-PEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAG 69 (183)
T ss_pred EEECCCHHHHHHHHHHCCC------CEEEE-------CC-HHHHHHCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 9834789999999998799------79998-------99-9998318989988940899999998878889999999849
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 6322355769999
Q gi|254780195|r 376 IPFLGICFGMQMA 388 (544)
Q Consensus 376 iP~LGIClGmQ~a 388 (544)
.|+||||+|||++
T Consensus 70 kP~LGIClGMQlL 82 (183)
T cd01749 70 KPVFGTCAGLILL 82 (183)
T ss_pred CCEEEHHHHHHHH
T ss_conf 9847510778887
No 63
>PRK13566 anthranilate synthase; Provisional
Probab=99.21 E-value=3.1e-10 Score=94.43 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=116.8
Q ss_pred EHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 52001481346888888888878736724167722565672344566216983997377786550168889988740476
Q gi|254780195|r 297 VGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKI 376 (544)
Q Consensus 297 VGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~i 376 (544)
-||-+=+-|.|-|-..-|.+---.++..|.+.-=+ +. ..... -.+.|+|++-+|=|.-.--|.-..+..|.++++
T Consensus 522 ~g~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d---~~-~~~l~-~~~pD~vvlSPGPG~P~d~g~~~~i~~~~~~~i 596 (724)
T PRK13566 522 SGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYP---VA-EEILD-RVNPDLVVLSPGPGRPEDFDCKATIDAALARNL 596 (724)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEECC---CC-HHHHH-HHCCCEEEECCCCCCCHHCCCHHHHHHHHHCCC
T ss_conf 77579998465327999999999819879998189---87-67776-318898998799979000558599999985799
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHH
Q ss_conf 32235576999999998751688999700035666641211501123465300156554674023165257855870668
Q gi|254780195|r 377 PFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLIS 456 (544)
Q Consensus 377 P~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~ 456 (544)
|.||+|||.|.++..|--.+-- .+.| .+ |-|- .+....++.++
T Consensus 597 PilGVCLGhQaI~eafGg~l~~-----------~~~p--------~H-------------GK~S-----~I~~~~~~~~F 639 (724)
T PRK13566 597 PIFGVCLGLQAIVEAFGGELGQ-----------LAYP--------MH-------------GKPS-----RIRVRGPGLVF 639 (724)
T ss_pred CEEEECCCHHHHHHHHCCEEEE-----------CCCC--------CC-------------CCEE-----EEEEECCCCCC
T ss_conf 8799771276998974938854-----------5857--------88-------------9813-----57984897410
Q ss_pred HHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCC--CCCCCCHHHHHHH
Q ss_conf 86379847660252333278899899978959999869998689998389984999724877327--8769884158999
Q gi|254780195|r 457 RIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKS--RPLDPHPLFVSFI 534 (544)
Q Consensus 457 ~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~S--rp~~phPLF~~fi 534 (544)
+--......-|+ |..-+.++- + -..|.++++++|| ++-++|-+..| .-|||||||--- .-...+-+...++
T Consensus 640 ~glp~~f~v~RY-HSL~v~~~~---l-P~~L~VTA~tedG-viMai~H~~lp-i~gVQFHPESIlT~~g~~G~~ii~N~~ 712 (724)
T PRK13566 640 SGLPNEFTVGRY-HSLFADPER---L-PDELLVTAETEDG-VIMAIEHKTLP-VAAVQFHPESIMTLGGEVGLRIIENVV 712 (724)
T ss_pred CCCCCCEEEEEE-EEEEECCCC---C-CCCEEEEEECCCC-EEEEEEECCCC-CEEEEECCHHHCCCCCCCCHHHHHHHH
T ss_conf 789996078841-379862677---9-9833899985898-28988517876-125610767862288744399999999
Q ss_pred HHHHHHH
Q ss_conf 9999876
Q gi|254780195|r 535 QATVLYS 541 (544)
Q Consensus 535 ~Aal~~~ 541 (544)
.-.....
T Consensus 713 ~~~~~~~ 719 (724)
T PRK13566 713 RLLARKA 719 (724)
T ss_pred HHHHHHH
T ss_conf 9986654
No 64
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.19 E-value=1.7e-10 Score=96.27 Aligned_cols=147 Identities=22% Similarity=0.293 Sum_probs=88.8
Q ss_pred CCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC---C---CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 7241677225656723445662169839973777865---5---016888998874047632235576999999998751
Q gi|254780195|r 323 TKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKR---G---SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNL 396 (544)
Q Consensus 323 ~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~R---G---ieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnv 396 (544)
..+++..++...-+. ...+.++||++|-||-..= . +..-...++.+.++++|+||||+|+|+++. .
T Consensus 26 ~~~~~~~~~~~~~~~---~~~~~~~dgvii~Gg~~~~~~~~~pwi~~~~~~i~~~~~~~~PilGIC~G~Qlla~-----a 97 (188)
T cd01741 26 ETIEIDVVDVYAGEL---LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLAR-----A 97 (188)
T ss_pred CCEEEEEEECCCCCC---CCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHH-----H
T ss_conf 846899996666989---97844408899969987778678866999999999999879999998468999999-----8
Q ss_pred CCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCC--CEEEEECCCCCCC
Q ss_conf 68899970003566664121150112346530015655467402316525785587066886379--8476602523332
Q gi|254780195|r 397 AGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGL--DLIPERHRHRYEV 474 (544)
Q Consensus 397 lgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~--~~I~ERHRHRYEv 474 (544)
+|-+ . ...| .| +..|.+++.+.+......+++. ....=-+-|..+|
T Consensus 98 lGg~------V--------~~~~----------------~~--~e~G~~~i~lt~~~~~~~~~~~~~~~~~~~~~H~d~v 145 (188)
T cd01741 98 LGGK------V--------GRNP----------------KG--WEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTV 145 (188)
T ss_pred CCCE------E--------EECC----------------CC--CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHEEE
T ss_conf 3999------9--------8789----------------87--5215799999547665422147997654340210272
Q ss_pred CHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCC
Q ss_conf 78899899978959999869998689998389984999724877
Q gi|254780195|r 475 NVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPE 518 (544)
Q Consensus 475 N~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPE 518 (544)
-. --.|..+.+.+++.. ++++...++ ..|+|||||
T Consensus 146 ~~------lP~~~~~la~s~~~~-~qa~~~~~~--~~g~QfHPE 180 (188)
T cd01741 146 VE------LPPGAVLLASSEACP-NQAFRYGDR--ALGLQFHPE 180 (188)
T ss_pred EE------CCCCCEEEEECCCCC-EEEEEECCE--EEEEECCCC
T ss_conf 43------899989999889997-889997995--899957612
No 65
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.19 E-value=3.3e-10 Score=94.19 Aligned_cols=183 Identities=17% Similarity=0.185 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH--CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 813468888888888787367241677225656723445662--169839973777865501688899887404763223
Q gi|254780195|r 303 LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHF--YGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 303 l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L--~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LG 380 (544)
+-|-|=|-.--|.|-=..++.++.+.--|... +...+.+ .+.++|++-||=|..--.|....+-..-..++|.||
T Consensus 6 lIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~---~~~~e~~~~~~p~~IVlSPGPG~P~dag~~~~ii~~~~~~iPILG 82 (531)
T PRK09522 6 LLDNIDSFTYNLADQLRSNGHNVVIYRNHIPA---QTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIG 82 (531)
T ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEECCCCC---CCCHHHHHHCCCCEEEECCCCCCCHHCCCHHHHHHHHCCCCCEEE
T ss_conf 98288862889999998669956999699831---301999972495969989999890236573999998659999899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHH-HHH
Q ss_conf 5576999999998751688999700035666641211501123465300156554674023165257855870668-863
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLIS-RIY 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~-~iY 459 (544)
||||||+++-.|--.|- .|...++ |.+ ..+.. .++-++ .+-
T Consensus 83 ICLGhQ~ia~~~Gg~v~---~a~~~~H-----------------------------Gk~-----s~i~~-~~~~lF~glp 124 (531)
T PRK09522 83 ICLGHQAIVEAYGGYVG---QAGEILH-----------------------------GKA-----SSIEH-DGQAMFAGLT 124 (531)
T ss_pred ECHHHHHHHHHCCCEEE---ECCCCCC-----------------------------CEE-----EEEEE-CCCCCCCCCC
T ss_conf 87877899997298896---7798432-----------------------------336-----56798-9852028999
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7984766025233327889989997895999986999868999838998499972487732787698841589999999
Q gi|254780195|r 460 GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATV 538 (544)
Q Consensus 460 g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal 538 (544)
..-.+. |. |...+ ..+ -.+|.+++.+ |+ .+.+++-++.|+| |||||||---++ .-..++..|+.-+.
T Consensus 125 ~~~~v~-rY-HSl~~-----~~l-P~~l~v~A~~-~g-~iMai~h~~~pi~-GVQFHPESi~T~-~G~~il~NFLn~~~ 191 (531)
T PRK09522 125 NPLPVA-RY-HSLVG-----SNI-PAGLTINAHF-NG-MVMAVRHDADRVC-GFQFHPESILTT-QGARLLEQTLAWAQ 191 (531)
T ss_pred CCCEEE-EE-CEECC-----CCC-CCCEEEEEEE-CC-EEEEEEECCCCEE-EEEECCCCCCCC-CHHHHHHHHHCCCC
T ss_conf 997799-64-43304-----479-9987999716-99-9999998999869-982087546887-77999999856543
No 66
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.16 E-value=2.2e-11 Score=102.70 Aligned_cols=167 Identities=23% Similarity=0.388 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC-------CCCHHHHHHHHHHHCCCCC
Q ss_conf 6888888888878736724167722565672344566216983997377--786-------5501688899887404763
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK-------RGSEGKIAAIKFARENKIP 377 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~-------RGieGkI~Ai~yARen~iP 377 (544)
-.||..||++.+. + ...+ ++ .+.++++|.+++||= |+. +|.. .+++- ..+.|
T Consensus 12 i~Sv~~al~~lg~----~--~~i~-------~~-~~~i~~~d~lILPGVGsF~~am~~L~~~~l~---~~i~~--~~~kp 72 (192)
T PRK13142 12 ISNVKRAIEHLGY----E--VVVS-------NT-SKIIDQAETIILPGVGHFKDAMSEIKRLNLN---AILAK--NTDKK 72 (192)
T ss_pred HHHHHHHHHHCCC----C--EEEE-------CC-HHHHHHCCEEEECCCCCHHHHHHHHHHCCHH---HHHHH--HCCCC
T ss_conf 9999999998599----8--7996-------89-9998437958975768789999998875859---99998--62898
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH
Q ss_conf 22355769999999987516889997000356666412115011234653001565546740231652578558706688
Q gi|254780195|r 378 FLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISR 457 (544)
Q Consensus 378 ~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~ 457 (544)
+||||||||++. -.|+| .++ .-..+++-....- .......+||+. .+..+ .+..
T Consensus 73 iLGICLGMQlL~------------~~SeE-g~~--~GLgli~G~V~kl--~~~~~vPhmGWn------~v~~~-~~~~-- 126 (192)
T PRK13142 73 MIGICLGMQLMY------------EHSDE-GDA--SGLGFIPGNISRI--QTEYPVPHLGWN------NLVSK-HPML-- 126 (192)
T ss_pred EEEEECCEEEEE------------CCCCC-CCC--CCCCEEEEEEEEE--CCCCCCCEECCH------HHCCC-CCCC--
T ss_conf 589650101431------------14555-676--7757786899983--689978665815------62533-8542--
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6379847660252333278899899978959999869998689998389984999724877327876988415899999
Q gi|254780195|r 458 IYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 458 iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
.++ . -+-|.|.+.+ ++. .++-..-....+-+|+-.+ .+||||||| ||-. .--.|+..|++-
T Consensus 127 --~~~-f--YFvHSY~~~~------~~~--~~a~t~yg~~f~s~v~~~N---i~G~QFHPE-KS~~-~Gl~lLknFl~g 187 (192)
T PRK13142 127 --NQD-V--YFVHSYQAPM------SEN--VIAYAQYGADIPAIVQFNN---YIGIQFHPE-KSGT-YGLQILRQAIQG 187 (192)
T ss_pred --CCC-E--EEEEEEECCC------CCC--EEEEEECCCEEEEEEEECC---EEEEECCHH-HCCH-HHHHHHHHHHCC
T ss_conf --364-4--7998765278------757--8999988996999999599---999958812-3558-589999999634
No 67
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.16 E-value=5.1e-10 Score=92.84 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 13468888888888787367241677225656723445662169839973777865501688899887404763223557
Q gi|254780195|r 304 KDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICF 383 (544)
Q Consensus 304 ~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGICl 383 (544)
-|.|=|-.--|.|-=...+..+.+.- +...+++ -.-.+.|+|++-||=|.-.--|....+--+-..++|.|||||
T Consensus 7 IDnyDSFT~Nl~~~l~~~g~~v~V~r-n~~~~~~----~~~~~pd~ivlSPGPg~P~d~g~~~~~~~~~~~~iPILGICL 81 (208)
T PRK05637 7 IDNHDSFVYNLVDAFAVAGYKCTVFR-NTVPVET----ILAANPDLICLSPGPGYPADAGNMMALIERTLGQIPLLGICL 81 (208)
T ss_pred EECCCCHHHHHHHHHHHCCCEEEEEE-CCCCHHH----HHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHCCCCEEEHHH
T ss_conf 94889759999999986799079996-9999999----985199959999999995777574999999735698221147
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH----
Q ss_conf 6999999998751688999700035666641211501123465300156554674023165257855870668863----
Q gi|254780195|r 384 GMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY---- 459 (544)
Q Consensus 384 GmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY---- 459 (544)
|||+++-.|--.|- .+. .. -|.|- .........-+.+|
T Consensus 82 GhQ~i~~~~Gg~v~---~~~--~~----------------------------HG~~s-----~i~~~~~g~~~~lf~gl~ 123 (208)
T PRK05637 82 GYQALIEYHGGKVE---PCG--PV----------------------------HGTTD-----NMILTDAGVQSPVFAGLA 123 (208)
T ss_pred HHHHHHHHCCCEEE---CCC--CC----------------------------CCEEE-----EEEECCCCCCCCCCCCCC
T ss_conf 78999997097883---067--76----------------------------55066-----789878888770006887
Q ss_pred -----------CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEE--ECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf -----------79847660252333278899899978959999--86999868999838998499972487732787698
Q gi|254780195|r 460 -----------GLDLIPERHRHRYEVNVRYREKLEGCGLKFSG--FSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDP 526 (544)
Q Consensus 460 -----------g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg--~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~p 526 (544)
++..-.=|. |...+. . ...++...+ .+..++.+.+++-.+.|+| |||||||---++ .-
T Consensus 124 ~~~~~~~~~~~~~~~~v~rY-HSl~~~-----~-~p~~~~~~~~~~~~~~~viMa~~h~~~p~~-GVQFHPESi~T~-~G 194 (208)
T PRK05637 124 TDVEPDHPEIPGRKVPIGRY-HSLGCV-----V-APDGIESLGTCSSEIGDVIMAARTTDGKAI-GLQFHPESVLSP-TG 194 (208)
T ss_pred CCCCCCCCCCCCCCCEEEEE-CCCEEE-----E-CCCCCEEEEEEECCCCCEEEEEEECCCCEE-EEEECCCCCCCC-CH
T ss_conf 65544553456775357710-601671-----0-799974889997599999999997899979-986697536887-77
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 8415899999998
Q gi|254780195|r 527 HPLFVSFIQATVL 539 (544)
Q Consensus 527 hPLF~~fi~Aal~ 539 (544)
.-++..||+-.+.
T Consensus 195 ~~il~nfv~~~~~ 207 (208)
T PRK05637 195 PVILSRCVEQLLA 207 (208)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999961
No 68
>PRK00784 cobyric acid synthase; Provisional
Probab=99.16 E-value=2.7e-09 Score=87.58 Aligned_cols=329 Identities=20% Similarity=0.241 Sum_probs=172.0
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-------
Q ss_conf 9239999375014444489999999999968982889854455334888888644350787279840025564-------
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFG------- 73 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG------- 73 (544)
|+|-|.|-| ..|+.||-+.++.+.++|+.+||+|.+.| |-.||=. -|||.||+|----=.
T Consensus 2 ~~k~lMv~G-T~S~vGKS~l~aaLCRi~~~~G~~VaPFK--------aQNMslN----s~vt~dG~EigrAQ~~QA~Aag 68 (492)
T PRK00784 2 MAKALMVQG-TTSDAGKSTLVAGLCRILARRGLRVAPFK--------AQNMSLN----SAVTADGGEIGRAQALQAEAAG 68 (492)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCCCCC--------HHHCCCC----CEECCCCCEEHHHHHHHHHHCC
T ss_conf 863058886-78887799999999999995898557857--------0224665----1788999833699999999869
Q ss_pred --CHHHHCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCC--
Q ss_conf --11332287477546801-----258999999888577757740256460248989999707889878999724312--
Q gi|254780195|r 74 --HYERFMGISTAKADNIT-----AGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTI-- 144 (544)
Q Consensus 74 --~YERFl~~~l~~~~niT-----~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTV-- 144 (544)
-=-++--+=|....+.+ -||.+.++-.+|=. +.-++.-..|++-..+..+++|++|+|=-|.-
T Consensus 69 ~~p~v~MNPILLKP~gd~~SQVIv~Gk~~g~~~a~~Y~--------~~~~~~~~~v~~a~~~L~~~~d~iV~EGAGSpaE 140 (492)
T PRK00784 69 VEPSVDMNPVLLKPQSDTGSQVIVQGKVVGNMDARDYH--------DYKPRLLEAVLESLDRLAAEYDLVVVEGAGSPAE 140 (492)
T ss_pred CCCCCCCCCEEECCCCCCCCEEEECCEECCCCCHHHHH--------HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 99976768877631899886799999787531399999--------8699999999999999886588999935898200
Q ss_pred -----CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHH-H-HHHHHHHHHCCCCCCEEE--EECCC
Q ss_conf -----22123068999999998749776857999974675422566200347-8-999999997499876899--92387
Q gi|254780195|r 145 -----GDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKP-T-QHSVKELQALGVHPDILL--IRADR 215 (544)
Q Consensus 145 -----GDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKP-T-QhSVk~Lrs~GIqPDiiv--cRse~ 215 (544)
.||-+|-+-+++ + -.++. |--|.-.|=+-.=- | +-=-.+-|++ ---+|+ -|.+.
T Consensus 141 iNL~~~Di~Nm~~A~~~-------~---apviL-----V~DIdRGGvfAsl~GT~~lL~~~eR~l--i~G~IiNKFRGD~ 203 (492)
T PRK00784 141 INLRDRDIANMGFAEAA-------D---APVIL-----VADIDRGGVFASLVGTLALLSPEERAR--VKGFVINKFRGDI 203 (492)
T ss_pred CCCCHHHHHHHHHHHHC-------C---CCEEE-----EEECCCCCHHHHHHHHHHHCCHHHHHH--EEEEEEEEECCCH
T ss_conf 26522002428999865-------9---98899-----997567642687763887599988711--5899997645874
Q ss_pred CCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 58999999998641988677240389862026689887649488999983878888620478999998741843437999
Q gi|254780195|r 216 DIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVA 295 (544)
Q Consensus 216 ~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~Ia 295 (544)
.|-+.-.+.|--.+++|.=.|+.-.+ .|.|+.-....+..+ .........++||
T Consensus 204 ~ll~pG~~~le~~tg~PvlGviP~~~----------------------~l~l~~EDs~~l~~~----~~~~~~~~~l~Ia 257 (492)
T PRK00784 204 SLLEPGLDWLEELTGIPVLGVLPYLD----------------------DLRLPAEDSLDLLLE----RAAGKGAGRLRVA 257 (492)
T ss_pred HHHCCHHHHHHHHHCCCCEEEECCCC----------------------CCCCCCCCCCCCCCC----CCCCCCCCCEEEE
T ss_conf 66355999999986898068614656----------------------799881015754344----5567777735899
Q ss_pred EEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC---------CCCCCCHHHHH
Q ss_conf 952001481346888888888878736724167722565672344566216983997377---------78655016888
Q gi|254780195|r 296 IVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG---------FGKRGSEGKIA 366 (544)
Q Consensus 296 iVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG---------FG~RGieGkI~ 366 (544)
+| +| + +.|= .=........-.|.+.|++.. +.|.+.|.|++||. .-.+|++-+
T Consensus 258 Vi-~l---P--~iSN--ftDfdpL~~e~~V~l~~v~~~--------~~l~~~D~vIlPGsK~Ti~DL~~Lr~~Gl~~~-- 319 (492)
T PRK00784 258 VP-RL---P--RISN--FTDFDPLRAEPGVDVRYVRPG--------EPLPDADLVILPGSKNTIADLAWLRESGWDEA-- 319 (492)
T ss_pred EE-EC---C--CCCC--CCCCHHHHHCCCEEEEEECCC--------CCCCCCCEEEECCCCCCHHHHHHHHHCCHHHH--
T ss_conf 98-06---7--5568--654435640787289997897--------65689999997998664899999998694999--
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCC
Q ss_conf 99887404763223557699999999875168899970003566664121150
Q gi|254780195|r 367 AIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMS 419 (544)
Q Consensus 367 Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~ 419 (544)
++-++.++.|.+|||.|+|++ --.+.|....|-+....+=..++|
T Consensus 320 -i~~~~~~G~~V~GICGGyQML-------G~~I~DP~gvE~~~~~~~GLGLLp 364 (492)
T PRK00784 320 -IRAHARRGGPVLGICGGYQML-------GRTIADPDGVEGAPGEVEGLGLLD 364 (492)
T ss_pred -HHHHHHCCCCEEEECCHHHHH-------CCEECCCCCCCCCCCCCCCCCCEE
T ss_conf -999997599789987028863-------020038656667877546523134
No 69
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.13 E-value=1.2e-10 Score=97.49 Aligned_cols=142 Identities=22% Similarity=0.317 Sum_probs=86.9
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCC
Q ss_conf 69839973777865501688899887404763223557699999999875168899970003566664121150112346
Q gi|254780195|r 346 GVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGD 425 (544)
Q Consensus 346 ~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~ 425 (544)
+..||++-||=.+=--++.-..-..--+-+||.||||+|||+++-.|--.|- .++..||..+.
T Consensus 47 ~pkgIILSGGP~SV~~~~aP~~d~~if~l~IPILGICYG~Qlia~~~GG~V~---~s~~rEyG~a~-------------- 109 (513)
T PRK00074 47 NPKGIILSGGPASVYEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVE---RAGKREYGRAE-------------- 109 (513)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCEEE---ECCCCEECCEE--------------
T ss_conf 9978998899963689999889989982699869975889999998599998---56960112148--------------
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEECCCCHHH-HHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEE
Q ss_conf 5300156554674023165257855870668-863798476602523332788998999789599998699986899983
Q gi|254780195|r 426 QQEKRLPSDDLGATMRLGAYDVSLKEETLIS-RIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEY 504 (544)
Q Consensus 426 ~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~-~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl 504 (544)
+.+..+|.+. .+-.+..+.--|- +.+.. --.|+.+.|.++++ .+-+++-
T Consensus 110 ---------------------l~i~~~s~Lf~gl~~~~~VWMSHg-------D~V~~-lP~gF~viA~s~n~-~iAai~~ 159 (513)
T PRK00074 110 ---------------------LEVDGDSALFKGIPEEQDVWMSHG-------DKVTE-LPEGFKVIASTENC-PIAAIAN 159 (513)
T ss_pred ---------------------EEEECCCCCCCCCCCCCEEEEECC-------CCEEE-CCCCCEEEEECCCC-CEEEEEE
T ss_conf ---------------------999158733368998636887524-------30143-79984799954997-3678980
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 89984999724877327876988415899999
Q gi|254780195|r 505 INHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 505 ~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
++.++| |+|||||-.-++ ....++..|+.-
T Consensus 160 ~~~~iy-GvQFHPEV~HT~-~G~~iL~NFl~~ 189 (513)
T PRK00074 160 EERKFY-GVQFHPEVTHTE-QGKKLLENFVFD 189 (513)
T ss_pred CCCCEE-EEECCCEEEECC-CCHHHHHHHHHH
T ss_conf 678678-870286345317-757999999999
No 70
>TIGR01823 PabB-fungal para-aminobenzoate synthase; InterPro: IPR010117 This entry represents the fungal clade of para-aminobenzoate synthase, which acts on chorismate to form para-aminobenzoic acid (PABA), a precursor of folate..
Probab=99.05 E-value=8.6e-10 Score=91.21 Aligned_cols=219 Identities=18% Similarity=0.262 Sum_probs=132.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEECCCCCC-CCCHHHHHCCCCEEEECCCCCCC--CCH--HHHHHHHHH
Q ss_conf 01481346888888888878736---72416772256567-23445662169839973777865--501--688899887
Q gi|254780195|r 300 YIHLKDAYRSLIEALRHSGVSNY---TKVQLSWIDAETLE-KEDPVKHFYGVHGILVPGGFGKR--GSE--GKIAAIKFA 371 (544)
Q Consensus 300 Y~~l~DaY~Si~EAL~hA~~~~~---~kv~i~wIdse~le-~~~~~~~L~~~dGIlVPGGFG~R--Gie--GkI~Ai~yA 371 (544)
|++-=|||-==+=+|.--...+. -.+.+.-|+++... -.+.++.|..+|+|+|=+|=|.= |.+ |.|.-+ |.
T Consensus 10 ~ID~YDSftyNvv~lle~~~d~~PGvnav~V~tvhsD~~~sm~~l~e~l~~FdAiVvGPGPG~PN~GA~d~gI~~~~-w~ 88 (851)
T TIGR01823 10 FIDAYDSFTYNVVALLEKALDVRPGVNAVSVITVHSDKFDSMDDLLELLLLFDAIVVGPGPGDPNVGAKDVGILREV-WE 88 (851)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHH-HH
T ss_conf 78701101689999999874158774468999970687235346888874178589888776776511444688999-97
Q ss_pred HC----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC-CCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEE
Q ss_conf 40----4763223557699999999875168899970003566-664121150112346530015655467402316525
Q gi|254780195|r 372 RE----NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEA-GVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYD 446 (544)
Q Consensus 372 Re----n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~-~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~ 446 (544)
.. ..||.||||||||.++. ..+|.=.|++++ .|--|.-|.-... .... .... .||
T Consensus 89 l~~Gk~D~~Pv~GICLGFQslcL--------~qGa~i~rlpn~p~HGqV~~~~t~~~--~if~--g~~~--------GyP 148 (851)
T TIGR01823 89 LANGKLDEVPVLGICLGFQSLCL--------YQGADIERLPNLPLHGQVYEVKTSDA--AIFE--GVSS--------GYP 148 (851)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHH--------HCCCCHHHCCCCCCCCEEEEEEECCH--HHHC--CCCC--------CCC
T ss_conf 32895313551100156899998--------55882356178865743788874011--5552--4114--------788
Q ss_pred EEECCCCHHHHHHC-CCEEEEECCCCCCCCHHHHHHHHHCC----CEEEEECCCCCEEEEEEECCCCEEEEEECCCC-CC
Q ss_conf 78558706688637-98476602523332788998999789----59999869998689998389984999724877-32
Q gi|254780195|r 447 VSLKEETLISRIYG-LDLIPERHRHRYEVNVRYREKLEGCG----LKFSGFSVDHALPEVVEYINHPWFIGVQYHPE-LK 520 (544)
Q Consensus 447 ~~l~~~S~~~~iYg-~~~I~ERHRHRYEvN~~y~~~le~~G----l~~sg~~~d~~lvEiiEl~~HpffvgvQfHPE-f~ 520 (544)
- -.++++=|.+|- .+.|..--|--=-=||. .+.|.... +.+...|.++.++-.+--++.||| ||||||| -+
T Consensus 149 d-tvk~trYHSLyan~~~id~strGvdsGnPq-adrfaskdldLL~~~l~ed~e~~i~Ms~~~~k~P~f-Gv~yHPESc~ 225 (851)
T TIGR01823 149 D-TVKSTRYHSLYANKESIDSSTRGVDSGNPQ-ADRFASKDLDLLALILLEDEEDQILMSVKAKKKPIF-GVQYHPESCK 225 (851)
T ss_pred C-CEEEEEEEEEEECCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCEE-EEEECCCCCC
T ss_conf 6-322445578873178865332555678850-123343236789988622688812200310588774-5650564334
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7876988415899999998764
Q gi|254780195|r 521 SRPLDPHPLFVSFIQATVLYSQ 542 (544)
Q Consensus 521 Srp~~phPLF~~fi~Aal~~~~ 542 (544)
|.-...-.||..|++-|+.+..
T Consensus 226 S~~~a~~kl~~nfl~la~~~N~ 247 (851)
T TIGR01823 226 SEKEASVKLLKNFLKLALINNV 247 (851)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC
T ss_conf 5545789999999987401672
No 71
>PRK07567 glutamine amidotransferase; Provisional
Probab=98.95 E-value=8.8e-09 Score=83.94 Aligned_cols=146 Identities=20% Similarity=0.269 Sum_probs=85.0
Q ss_pred CCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC-CCCC-----------CCHHHH-HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 724167722565672344566216983997377-7865-----------501688-899887404763223557699999
Q gi|254780195|r 323 TKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG-FGKR-----------GSEGKI-AAIKFARENKIPFLGICFGMQMAV 389 (544)
Q Consensus 323 ~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG-FG~R-----------GieGkI-~Ai~yARen~iP~LGIClGmQ~av 389 (544)
-.+...-++.+.+.. ..|.++||++|-|| |..- -+|-.+ .-++.+.+.++|+||||+|+|++.
T Consensus 32 ~q~~~~rld~~~~p~----~dL~~ydgvivgGsp~~vsd~~~~~~~~q~~~e~~l~~Ll~~~~~~~~P~LGiC~G~Qlla 107 (242)
T PRK07567 32 AELRRIRLDHEELPD----LDLDDFSGVIVGGSPFNVSDPAYSKSPTQRRVEAELSGLLDEVVARDFPFLGCCYGVGTLG 107 (242)
T ss_pred HHEEEEEECCCCCCC----CCHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 997999814889998----7830007899948897567854456468889999999999999846998899856389999
Q ss_pred HHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCC----CEEE
Q ss_conf 999875168899970003566664121150112346530015655467402316525785587066886379----8476
Q gi|254780195|r 390 IEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGL----DLIP 465 (544)
Q Consensus 390 IEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~----~~I~ 465 (544)
. .+|=+ .+.+ .|. -.|..++.+++..+..-+.+. -.+.
T Consensus 108 ~-----alGG~------V~~~-------------------------~~~--e~G~~~i~lt~~g~~Dpl~~~lp~~f~a~ 149 (242)
T PRK07567 108 H-----HLGGV------VDRT-------------------------HGE--PVGATTVTLTDAGRRDPLTADLPDTFTAF 149 (242)
T ss_pred H-----HCCCE------EECC-------------------------CCC--EEEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 9-----72988------8279-------------------------987--07799999814567791101798441799
Q ss_pred EECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 60252333278899899978959999869998689998389984999724877327
Q gi|254780195|r 466 ERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKS 521 (544)
Q Consensus 466 ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~S 521 (544)
. -|.-+|- .+ -.|.+.-+.|+.- -+.++-+.+| ..|+|||||+..
T Consensus 150 ~--~H~d~V~-----~L-P~ga~lLA~s~~c-pvqafr~g~~--~y~~QFHPE~d~ 194 (242)
T PRK07567 150 T--GHKEAVV-----AL-PPGAVLLATGPTC-PVQMFRAGEN--VYATQFHPELDA 194 (242)
T ss_pred E--ECCCEEE-----EC-CCCCEEEECCCCC-CHHEEEECCC--EEEEECCCCCCH
T ss_conf 8--6164137-----68-9984899849998-2361893797--899924840799
No 72
>PRK09065 glutamine amidotransferase; Provisional
Probab=98.95 E-value=5.7e-09 Score=85.32 Aligned_cols=134 Identities=22% Similarity=0.319 Sum_probs=76.6
Q ss_pred HHHCCCCEEEECCCC-CCC-C---CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEE
Q ss_conf 662169839973777-865-5---01688899887404763223557699999999875168899970003566664121
Q gi|254780195|r 342 KHFYGVHGILVPGGF-GKR-G---SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIA 416 (544)
Q Consensus 342 ~~L~~~dGIlVPGGF-G~R-G---ieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~ 416 (544)
..+.++||++|-|+- +.. . +.--..-++-|.+.++|+||||+|+|++.-.+-=.|- .
T Consensus 52 p~~~~~dg~iitGS~~~v~d~~pWi~~l~~~ir~~~~~~~PilGICfGhQllA~AlGG~V~-----------~------- 113 (238)
T PRK09065 52 PAPEDFAGVLITGSHAMVTDRAPWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVG-----------Y------- 113 (238)
T ss_pred CCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCEEE-----------E-------
T ss_conf 8957848899979852057998889999999999987799999981778999998498797-----------6-------
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCC-C-EEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
Q ss_conf 150112346530015655467402316525785587066886379-8-47660252333278899899978959999869
Q gi|254780195|r 417 LMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGL-D-LIPERHRHRYEVNVRYREKLEGCGLKFSGFSV 494 (544)
Q Consensus 417 ~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~-~-~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~ 494 (544)
...|. -+|.+++.+.+.....-++.. . ...--+-|+-+|- .+ -.|.+.-|.|+
T Consensus 114 -----------------~p~G~--eiG~~~v~lt~~g~~dplf~~~p~~~~~~~~H~D~V~-----~l-P~ga~~LAss~ 168 (238)
T PRK09065 114 -----------------NPAGR--ESGTVALELHPAAAQDPLFAGLPATFPAHATHLQTVL-----RL-PPGAVVLARSA 168 (238)
T ss_pred -----------------CCCCC--CCCEEEEEECHHCCCCCHHCCCCCCCEEEEEEECEEE-----EC-CCCEEEEEECC
T ss_conf -----------------79976--3651256875100457111189876179999514289-----64-99838998099
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 998689998389984999724877327
Q gi|254780195|r 495 DHALPEVVEYINHPWFIGVQYHPELKS 521 (544)
Q Consensus 495 d~~lvEiiEl~~HpffvgvQfHPEf~S 521 (544)
.. -+.++-+.+| .+|+||||||..
T Consensus 169 ~c-~~qa~~~g~~--~~gvQfHPEft~ 192 (238)
T PRK09065 169 HD-PHQAFRYGPS--AWGVQFHPEFTA 192 (238)
T ss_pred CC-HHHHEEECCC--EEEEECCCCCCH
T ss_conf 99-0571785894--899956862899
No 73
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.90 E-value=2.4e-08 Score=80.73 Aligned_cols=130 Identities=23% Similarity=0.381 Sum_probs=75.4
Q ss_pred HHHCCCCEEEECCC-CCCC----CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHCCCCCCCCE
Q ss_conf 66216983997377-7865----50168889988740476322355769999999987516889-997000356666412
Q gi|254780195|r 342 KHFYGVHGILVPGG-FGKR----GSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIP-NACSTEFSEAGVPVI 415 (544)
Q Consensus 342 ~~L~~~dGIlVPGG-FG~R----GieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~-dAnStEf~~~~~pvI 415 (544)
+.|.++||++|-|| ++.. -+.--+.-|+-|-..++|+||||||.|++ ||. +|=+ ..+.
T Consensus 52 ~~l~~~dglvVlGGpmsa~D~~p~l~~e~~~I~~~l~~~~P~LGICLGaQLl----A~a-lGg~V~~~~----------- 115 (243)
T PRK06490 52 ETLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQML----ARH-LGARVAPHP----------- 115 (243)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHH----HHH-HCCEEECCC-----------
T ss_conf 9754605899928999989987179999999999998699889988849999----998-398884488-----------
Q ss_pred ECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCC
Q ss_conf 11501123465300156554674023165257855870668863798476602523332788998999789599998699
Q gi|254780195|r 416 ALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVD 495 (544)
Q Consensus 416 ~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d 495 (544)
.|..-.|-|++...+......- ....+..=|+..|++ -.|.+.-+.|+.
T Consensus 116 ---------------------~g~~EiG~~~i~~t~~g~~~~~-~p~~v~~wH~e~f~L---------P~gA~lLA~s~~ 164 (243)
T PRK06490 116 ---------------------DGRVEIGYYPLRPTEAGRALMP-WPEMVYHWHREGFDL---------PKGAELLATGDD 164 (243)
T ss_pred ---------------------CCCCCCCCEEEEECCCCCCCCC-CCCEEEEEECCCCCC---------CCCCEEEECCCC
T ss_conf ---------------------8877578523567745323458-978367862432006---------999589878999
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 98689998389984999724877327
Q gi|254780195|r 496 HALPEVVEYINHPWFIGVQYHPELKS 521 (544)
Q Consensus 496 ~~lvEiiEl~~HpffvgvQfHPEf~S 521 (544)
- -..++-+.+| ..|+|||||++.
T Consensus 165 c-~~QAFr~G~~--a~g~QFHpEvt~ 187 (243)
T PRK06490 165 F-PNQAFRYGDN--AWGLQFHPEVTR 187 (243)
T ss_pred C-CHHHEEECCC--EEEEECCEECCH
T ss_conf 8-3682897694--899954847878
No 74
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221 This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=98.89 E-value=2.5e-09 Score=87.92 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHC------CCCCEEEECCCCCCCCCHHHHHC-CCCEEEECCCCCC---CCCH-HHHH-HHHHHH
Q ss_conf 346888888888878736------72416772256567234456621-6983997377786---5501-6888-998874
Q gi|254780195|r 305 DAYRSLIEALRHSGVSNY------TKVQLSWIDAETLEKEDPVKHFY-GVHGILVPGGFGK---RGSE-GKIA-AIKFAR 372 (544)
Q Consensus 305 DaY~Si~EAL~hA~~~~~------~kv~i~wIdse~le~~~~~~~L~-~~dGIlVPGGFG~---RGie-GkI~-Ai~yAR 372 (544)
|+|=|=.==|..-=-.++ ..|-++-.|+-.+.+-+....+. =+|+|+|-+|=++ -|+. |.|. +|+.+-
T Consensus 6 DnYDSFTYNlv~~~~~~gdisPGv~~V~Vkrnd~~~~~~ie~L~P~~~lfdaivisPGPC~P~eAa~~~Gii~~~i~h~a 85 (212)
T TIGR00566 6 DNYDSFTYNLVQYFEELGDISPGVAEVVVKRNDSLTLQEIEALLPLLPLFDAIVISPGPCTPNEAAISMGIILEAIRHFA 85 (212)
T ss_pred ECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHHC
T ss_conf 56742378999986421776736105777206731034587631135633456765865683212204117999987423
Q ss_pred C--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEEC
Q ss_conf 0--47632235576999999998751688999700035666641211501123465300156554674023165257855
Q gi|254780195|r 373 E--NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLK 450 (544)
Q Consensus 373 e--n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~ 450 (544)
= ..+|.||||||.|.|.-.|-=.|.- | .. +|. |- .++....
T Consensus 86 GkldevPILGvCLG~QA~~qA~Gg~V~~---a-----~~-------~~H-----------------Gk-----~s~i~hn 128 (212)
T TIGR00566 86 GKLDEVPILGVCLGHQALAQAFGGDVVR---A-----NT-------VMH-----------------GK-----TSEIEHN 128 (212)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCEEE---E-----CC-------CCC-----------------CC-----CCCEEEC
T ss_conf 7622676020105568788742872254---2-----11-------368-----------------73-----0012477
Q ss_pred CCCHHHHHH---C-CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CEEEEEEECCCCEEEEEECCCCC-CCCCC
Q ss_conf 870668863---7-984766025233327889989997895999986999-86899983899849997248773-27876
Q gi|254780195|r 451 EETLISRIY---G-LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDH-ALPEVVEYINHPWFIGVQYHPEL-KSRPL 524 (544)
Q Consensus 451 ~~S~~~~iY---g-~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~-~lvEiiEl~~HpffvgvQfHPEf-~Srp~ 524 (544)
..++...+- - .....-|+ |.--|||+-.+.. +.+++++... ..+-++--++.||+ |||||||- .| .
T Consensus 129 g~~~f~GL~~GyPP~~L~~TRY-HSL~V~p~~l~~~----~~~~~~~~~~G~eiM~irh~~~p~e-GVQFHPESilS--e 200 (212)
T TIGR00566 129 GAGIFRGLFNGYPPDTLTATRY-HSLVVEPETLPTC----FQVTALEEENGIEIMAIRHRDLPLE-GVQFHPESILS--E 200 (212)
T ss_pred CCEEECCCCCCCCCCCCCCCCE-EEEEECCCCCCCC----CCEEEEECCCCCEEEHHHHCCCCCC-CEEECCHHHHH--H
T ss_conf 7101246557768664435750-5566744577622----0101000168701310133478502-20107135534--2
Q ss_pred CCCHHHHHHHH
Q ss_conf 98841589999
Q gi|254780195|r 525 DPHPLFVSFIQ 535 (544)
Q Consensus 525 ~phPLF~~fi~ 535 (544)
.-+-|...||+
T Consensus 201 ~G~~ll~Nfl~ 211 (212)
T TIGR00566 201 LGHQLLANFLH 211 (212)
T ss_pred HHHHHHHHHHC
T ss_conf 27899998723
No 75
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.89 E-value=3.1e-08 Score=80.01 Aligned_cols=183 Identities=21% Similarity=0.249 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHH-HHHHHHHHHCCCCCHHHHH
Q ss_conf 134688888888887873672416772256567234456621698399737778655016-8889988740476322355
Q gi|254780195|r 304 KDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEG-KIAAIKFARENKIPFLGIC 382 (544)
Q Consensus 304 ~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieG-kI~Ai~yARen~iP~LGIC 382 (544)
-|.|=|-.--|..--..++.++.+..=| .++.+ ..+ -.+.|+|++-+|=|.-.=-| ...+++.+ ..++|.||||
T Consensus 7 IDNyDSFtyNLv~yl~~lg~~v~V~rnd--~~~~~-~~~-~~~pd~iviSPGPG~P~d~G~~~~~i~~~-~~~~PiLGVC 81 (191)
T COG0512 7 IDNYDSFTYNLVQYLRELGAEVTVVRND--DISLE-LIE-ALKPDAIVISPGPGTPKDAGISLELIRRF-AGRIPILGVC 81 (191)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEECC--CCCHH-HHH-HCCCCEEEECCCCCCHHHCCHHHHHHHHH-CCCCCEEEEC
T ss_conf 9774424999999999739934999889--65877-886-04999899848997937736189999986-0899889987
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCC
Q ss_conf 76999999998751688999700035666641211501123465300156554674023165257855870668863798
Q gi|254780195|r 383 FGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLD 462 (544)
Q Consensus 383 lGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~ 462 (544)
||.|..+-.|--.|-.. +.| .. | .-...-..|+-+++=..++
T Consensus 82 LGHQai~~~fGg~V~~a-----------~~~--------~H-------------G------K~s~i~h~g~~iF~glp~~ 123 (191)
T COG0512 82 LGHQAIAEAFGGKVVRA-----------KEP--------MH-------------G------KTSIITHDGSGLFAGLPNP 123 (191)
T ss_pred CCHHHHHHHHCCEEEEC-----------CCC--------CC-------------C------EEEEEECCCCCCCCCCCCC
T ss_conf 43789999739788755-----------977--------67-------------8------1255402996001579998
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 47660252333278899899978959999869998689998389984999724877327876988415899999
Q gi|254780195|r 463 LIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 463 ~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
...-|+ |.--++++-. -..|.+++++.|++.+-+++-++.|.| |+|||||---+ ...+-++..|++.
T Consensus 124 f~v~RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~pi~-gvQFHPESilT-~~G~~il~Nfl~~ 190 (191)
T COG0512 124 FTVTRY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLPIY-GVQFHPESILT-EYGHRILENFLRL 190 (191)
T ss_pred CEEEEE-EEEEECCCCC----CCCEEEEEEECCCCEEEEEEECCCCEE-EEECCCCCCCC-CCHHHHHHHHHHH
T ss_conf 888862-7898447879----983389999689987988860899878-88208710366-2148999999844
No 76
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.88 E-value=6.2e-09 Score=85.04 Aligned_cols=135 Identities=24% Similarity=0.255 Sum_probs=74.9
Q ss_pred CCCEEEECCCCC---CCC--CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH--HHCCCCCCCCEECC
Q ss_conf 698399737778---655--01688899887404763223557699999999875168899970--00356666412115
Q gi|254780195|r 346 GVHGILVPGGFG---KRG--SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACS--TEFSEAGVPVIALM 418 (544)
Q Consensus 346 ~~dGIlVPGGFG---~RG--ieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnS--tEf~~~~~pvI~~l 418 (544)
+.|||++.||=- ..+ ..--...++.+..-++|.||||+|||+|+- .+|=+-..+ .||.
T Consensus 45 ~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~-----~lGg~V~~~~~~E~G---------- 109 (198)
T COG0518 45 SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAK-----ALGGKVERGPKREIG---------- 109 (198)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHH-----HHCCEEECCCCCCCC----------
T ss_conf 88889985898877644333055789999718888878998761899999-----849889646887651----------
Q ss_pred CHHCCCCCCCCCCCCCCCCCEEEECCEEEEECC-CC-HHHHHHCCCEEEEECCCCCCCCHHHHHHHH--HCCCEEEEECC
Q ss_conf 011234653001565546740231652578558-70-668863798476602523332788998999--78959999869
Q gi|254780195|r 419 SEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKE-ET-LISRIYGLDLIPERHRHRYEVNVRYREKLE--GCGLKFSGFSV 494 (544)
Q Consensus 419 ~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~-~S-~~~~iYg~~~I~ERHRHRYEvN~~y~~~le--~~Gl~~sg~~~ 494 (544)
.+++.+.+ .+ +...+-.... .|-..+-+.+. -.|.++-+.|+
T Consensus 110 -------------------------~~~v~~~~~~~~l~~gl~~~~~---------~v~~sH~D~v~~lP~g~~vlA~s~ 155 (198)
T COG0518 110 -------------------------WTPVELTEGDDPLFAGLPDLFT---------TVFMSHGDTVVELPEGAVVLASSE 155 (198)
T ss_pred -------------------------EEEEEEECCCCCCCCCCCCCCC---------CCCCCHHCCCCCCCCCCEEEECCC
T ss_conf -------------------------5999972586500048854337---------106613074434899989986589
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 9986899983899849997248773278769884158999
Q gi|254780195|r 495 DHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 (544)
Q Consensus 495 d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi 534 (544)
.- -..++... +-..|+|||||+.. ....-++..|.
T Consensus 156 ~c-p~qa~~~~--~~~~gvQFHpEv~~--~~~~~~l~nf~ 190 (198)
T COG0518 156 TC-PNQAFRYG--KRAYGVQFHPEVTH--EYGEALLENFA 190 (198)
T ss_pred CC-HHHHEECC--CCEEEEEEEEEEEH--HHHHHHHHHHH
T ss_conf 98-04205667--85799942018738--99999999865
No 77
>KOG1224 consensus
Probab=98.85 E-value=3.4e-08 Score=79.74 Aligned_cols=198 Identities=23% Similarity=0.345 Sum_probs=105.6
Q ss_pred CCEEEEEEHHHCCCCHHHH-HHHHHHHHHH-HHHCCCCCEEEECCCCCCCCCHHHHHC---CCCEEEECCCCCCC-CCHH
Q ss_conf 4379999520014813468-8888888887-873672416772256567234456621---69839973777865-5016
Q gi|254780195|r 290 NEVKVAIVGKYIHLKDAYR-SLIEALRHSG-VSNYTKVQLSWIDAETLEKEDPVKHFY---GVHGILVPGGFGKR-GSEG 363 (544)
Q Consensus 290 ~~V~IaiVGKY~~l~DaY~-Si~EAL~hA~-~~~~~kv~i~wIdse~le~~~~~~~L~---~~dGIlVPGGFG~R-GieG 363 (544)
..+++-++--| |||. -|..+|..+. ...-+-+...|..++. ++.+. -+|+|+|-+|=|.- |.+-
T Consensus 13 ~rl~~LlID~Y----DSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~------~~~l~q~~~FDaIVVgPGPG~P~~a~d 82 (767)
T KOG1224 13 PRLRTLLIDNY----DSYTFNIYQLLSTINGVPPVVIVHDEWTWEDA------YHYLYQDVAFDAIVVGPGPGSPMCAAD 82 (767)
T ss_pred HHEEEEEEECC----CCHHHHHHHHHHHHCCCCCEEEEECCCCCHHH------HHHHHHCCCCCEEEECCCCCCCCCHHH
T ss_conf 12028887124----54121399999874179967998343237789------998864002244896689979874788
Q ss_pred H-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 8-889988740476322355769999999987516889997000356666412115011234653001565546740231
Q gi|254780195|r 364 K-IAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRL 442 (544)
Q Consensus 364 k-I~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRL 442 (544)
+ |..--|---|.||.||||||+|.+.. ..+|+-.+-+.-.|--+.
T Consensus 83 ~gI~~rl~~~~~~iPilGICLGfQal~l--------~hGA~v~~~n~p~HGrvs-------------------------- 128 (767)
T KOG1224 83 IGICLRLLLECRDIPILGICLGFQALGL--------VHGAHVVHANEPVHGRVS-------------------------- 128 (767)
T ss_pred HHHHHHHHHHCCCCCEEEEEHHHHHHHH--------HCCCCEECCCCCCCCEEE--------------------------
T ss_conf 7899999986578864654321476765--------316611037876432466--------------------------
Q ss_pred CCEEEEECCCCHHHHH---HCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCC
Q ss_conf 6525785587066886---3798476602523332788998999789599998699986899983899849997248773
Q gi|254780195|r 443 GAYDVSLKEETLISRI---YGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPEL 519 (544)
Q Consensus 443 G~~~~~l~~~S~~~~i---Yg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf 519 (544)
.++...+-++..| |..+.-.-|+ |..-+|+.=++.+. ...+-.+++|-++--+--.+-||| |+|||||-
T Consensus 129 ---~i~~~~~~~f~gi~sg~~~~fK~~RY-HSL~in~~pid~l~---il~t~~ddng~ilMsi~~~~fPhf-G~qyHPES 200 (767)
T KOG1224 129 ---GIEHDGNILFSGIPSGRNSDFKVVRY-HSLIINSLPIDLLP---ILWTIYDDNGHILMSIMHSSFPHF-GLQYHPES 200 (767)
T ss_pred ---EEEECCCEEECCCCCCCCCCCEEEEE-EEEEECCCCHHHHC---CEEEEECCCCEEEEEEECCCCCCC-CEEECHHH
T ss_conf ---67726847871577788664404776-77872577611212---013760688628987531578853-42337077
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 278769884158999999987
Q gi|254780195|r 520 KSRPLDPHPLFVSFIQATVLY 540 (544)
Q Consensus 520 ~Srp~~phPLF~~fi~Aal~~ 540 (544)
-.. ....-||..|++-+..+
T Consensus 201 ~~s-~~g~~lfkNFl~lt~~~ 220 (767)
T KOG1224 201 IAS-TYGSQLFKNFLDLTVNY 220 (767)
T ss_pred HHH-HHHHHHHHHHHHHHCCC
T ss_conf 531-34579998777763367
No 78
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.85 E-value=3.9e-08 Score=79.29 Aligned_cols=156 Identities=19% Similarity=0.312 Sum_probs=86.5
Q ss_pred CCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC-CCC---C---CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 724167722565672344566216983997377-786---5---501688899887404763223557699999999875
Q gi|254780195|r 323 TKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG-FGK---R---GSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARN 395 (544)
Q Consensus 323 ~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG-FG~---R---GieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARn 395 (544)
..+.+.+++...-+ ..-..+.++||++|-|| .+. . =+..-+.-|+-|.+.++|+||||||+|++.-.+-=.
T Consensus 26 ~g~~~~~~~~~~~~--~~p~~~~~~d~livlGGpms~~d~~~~Pwl~~e~~lIr~a~~~~~PvLGIClG~QLlA~AlGG~ 103 (235)
T PRK07053 26 RGYRVRYVDVGVDD--LEVLDALEPDLLVVLGGPIGVYDDALYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGAR 103 (235)
T ss_pred CCCEEEEEECCCCC--CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCE
T ss_conf 89959999678898--8999966679999938998988776685589999999999986998899847389999970977
Q ss_pred CCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCH---HHHHHC-CCEEEEECCCC
Q ss_conf 16889997000356666412115011234653001565546740231652578558706---688637-98476602523
Q gi|254780195|r 396 LAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETL---ISRIYG-LDLIPERHRHR 471 (544)
Q Consensus 396 vlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~---~~~iYg-~~~I~ERHRHR 471 (544)
|- + ....| .|-+++.+.+..+ +...-. ...+.. .|.
T Consensus 104 V~--~-~~~~E-----------------------------------iG~~~v~~t~~~~~dpl~~~~~~~~~v~~--wH~ 143 (235)
T PRK07053 104 VY--P-GAQKE-----------------------------------IGWAPLTLTDAGRASPLRHLDGADTPVLH--WHG 143 (235)
T ss_pred EE--C-CCCCC-----------------------------------EEEEEEEECCCCCCCCHHCCCCCCCEEEE--EEC
T ss_conf 86--0-89960-----------------------------------05887785512357700014876772799--954
Q ss_pred CCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33278899899978959999869998689998389984999724877327876988415899999
Q gi|254780195|r 472 YEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 472 YEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
-.| + + -.|.+.-+.|++.. +.++-+.+| .+|+|||||+++ .++..++++
T Consensus 144 D~~-----~-L-P~ga~~LAss~~c~-~Qaf~~g~~--~~g~QFHpE~t~------~~v~~W~~~ 192 (235)
T PRK07053 144 DTF-----D-L-PEGAILLASTPACR-NQAFAWGNH--VLALQFHPEIRA------DRFEPWLIG 192 (235)
T ss_pred EEE-----E-C-CCCCEEEECCCCCH-HHHEEECCC--EEEEECCEECCH------HHHHHHHHH
T ss_conf 085-----3-4-99838998289985-896784796--899965846888------999999984
No 79
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.83 E-value=7.1e-08 Score=77.39 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=90.8
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC-CCCCCC---------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 6724167722565672344566216983997377-786550---------168889988740476322355769999999
Q gi|254780195|r 322 YTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG-FGKRGS---------EGKIAAIKFARENKIPFLGICFGMQMAVIE 391 (544)
Q Consensus 322 ~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG-FG~RGi---------eGkI~Ai~yARen~iP~LGIClGmQ~avIE 391 (544)
....++.+++...-+. .-..+.++||++|-|| .+.-.. .-...-|+-|-+.++|+||||||.|++.-
T Consensus 23 ~~G~~~~~~~~~~g~~--lP~~~~~~d~liVlGGpms~~~~~e~~p~l~l~~E~~lir~a~~~~~PvlGIClG~QliA~- 99 (235)
T PRK08250 23 DRGYTISWSRVYAGEA--LPENADGFDMLIVLGGPQSPRTTREECPYFDSKAEQHLINQAITARKAVVGVCLGSQLIGE- 99 (235)
T ss_pred HCCCEEEEEECCCCCC--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-
T ss_conf 7899699996689998--9998102588999789987777321278747099999999999869988998167799999-
Q ss_pred HHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC----CCEEEEE
Q ss_conf 987516889997000356666412115011234653001565546740231652578558706688637----9847660
Q gi|254780195|r 392 AARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG----LDLIPER 467 (544)
Q Consensus 392 fARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg----~~~I~ER 467 (544)
++|=+ ....+.+ -.|-+++.+++......+.+ .-.+.
T Consensus 100 ----AlGg~------V~~~~~~---------------------------EiG~~~i~~t~~~~~d~~~~~~~~~~~v~-- 140 (235)
T PRK08250 100 ----ALGAK------YCQSPEK---------------------------EIGHFPITLTEAGLRDPLLKHFGSTLTVG-- 140 (235)
T ss_pred ----HCCCE------EECCCCC---------------------------EEEEEEEEEECCCCCCHHHHCCCCCCEEE--
T ss_conf ----80987------7548998---------------------------24489716301444584665289876578--
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 25233327889989997895999986999868999838998499972487732787698841589999999
Q gi|254780195|r 468 HRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATV 538 (544)
Q Consensus 468 HRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal 538 (544)
|.|+ ++ -.| -.|.+.-+.|+.. -..++-+.+| ..|+|||||++. ..+.++|+.+-
T Consensus 141 ~wH~-d~-----~~L-P~gA~lLAss~~c-~~Qaf~~g~~--~~g~QfHpE~t~------~~v~~wi~~~~ 195 (235)
T PRK08250 141 HWHN-DM-----PGL-TDQATVLATSEGC-PRQIVQYGNL--VYGFQCHMEFTV------EAVEGLIAHSQ 195 (235)
T ss_pred EEEE-EE-----EEC-CCCCEEEECCCCC-HHHHEEECCC--EEEEECCEECCH------HHHHHHHHHHH
T ss_conf 9852-36-----206-9996799739998-4895882695--899971037899------99999999749
No 80
>PRK05665 amidotransferase; Provisional
Probab=98.79 E-value=3.4e-07 Score=72.50 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC-CCCCCCHHH----HHHHHHHHCCCCCHHH
Q ss_conf 46888888888878736724167722565672344566216983997377-786550168----8899887404763223
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG-FGKRGSEGK----IAAIKFARENKIPFLG 380 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG-FG~RGieGk----I~Ai~yARen~iP~LG 380 (544)
.|-...++|.... +..+++...+..+ .+- -..+..+||++|.|+ ++...-+-- ..-++-+.++++|+||
T Consensus 23 ~y~~mF~~ll~~~---~~~~~~~~~~v~~--ge~-P~~~~~~dg~vITGS~~~vyd~~pWi~~L~~~i~~~~~~~~pilG 96 (240)
T PRK05665 23 GYGRMFEQLFARQ---PIAAEFVVYNVVQ--GDY-PADDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLG 96 (240)
T ss_pred CHHHHHHHHHHHC---CCCCEEEEEEEEC--CCC-CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9889999999618---9985599997006--879-989778789999589874689967699999999999876999899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHH-HH
Q ss_conf 55769999999987516889997000356666412115011234653001565546740231652578558706688-63
Q gi|254780195|r 381 ICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISR-IY 459 (544)
Q Consensus 381 IClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~-iY 459 (544)
||+|.|++ |+ .||=+- |-+ ..|. -.|.+++.+.+...... .-
T Consensus 97 ICfGHQli----A~-ALGG~V----~~~--------------------------~~Gw--~vG~~~~~~~~~~~~~~~~~ 139 (240)
T PRK05665 97 VCFGHQLL----AL-LLGGKA----ERA--------------------------SQGW--GVGIHRYQLAAHAPWMSPAV 139 (240)
T ss_pred EEHHHHHH----HH-HHCCEE----EEC--------------------------CCCC--EEEEEEEEECCCCCCCCCCC
T ss_conf 94436888----88-609836----127--------------------------9973--66679988758774335875
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCC
Q ss_conf 7984766025233327889989997895999986999868999838998499972487732
Q gi|254780195|r 460 GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELK 520 (544)
Q Consensus 460 g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~ 520 (544)
.+-.+..-| +=+|- .+ -.|...-|.|+.- -+.++...+| .+++||||||.
T Consensus 140 ~~~~l~~~H--~D~V~-----~l-P~ga~~Lass~~c-p~q~~~~~~~--~~~~Q~HPEf~ 189 (240)
T PRK05665 140 TELTLLISH--QDQVT-----AL-PEGATVIASSDFC-PNAAYHIRDQ--VLCFQGHPEFV 189 (240)
T ss_pred CCCEEEEEE--CCEEE-----EC-CCCEEEEEECCCC-CHHHEECCCC--EEEEECCCCCC
T ss_conf 640799772--24278-----57-9984899867998-3334262786--89991696879
No 81
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=98.77 E-value=9.9e-09 Score=83.58 Aligned_cols=129 Identities=23% Similarity=0.327 Sum_probs=79.5
Q ss_pred CCEEEECCCCCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCC
Q ss_conf 983997377786-5501688899887404763223557699999999875168899970003566664121150112346
Q gi|254780195|r 347 VHGILVPGGFGK-RGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGD 425 (544)
Q Consensus 347 ~dGIlVPGGFG~-RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~ 425 (544)
=|=++.-+|=|. .-++ --..|+-|+-.++|.||+|||+|-||=.|-=. .+.-..|+ +++
T Consensus 568 PDLVVLSPGPGrP~dFd-v~~Ti~aa~ar~lP~FGVCLGLQg~vEafGG~-----------L~vL~~P~--------HGK 627 (726)
T TIGR01815 568 PDLVVLSPGPGRPKDFD-VKETIKAALARDLPVFGVCLGLQGLVEAFGGE-----------LDVLAIPV--------HGK 627 (726)
T ss_pred CCEEEECCCCCCCCCCC-HHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCC-----------CCCCCCCC--------CCC
T ss_conf 98898687312387544-78899999972898577413468999874672-----------13578887--------886
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEEC
Q ss_conf 53001565546740231652578558706688637984766025233327889989997895999986999868999838
Q gi|254780195|r 426 QQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYI 505 (544)
Q Consensus 426 ~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~ 505 (544)
. +.--.+.|+|.+++=-++....=|+ |.-- .-.+.|- .-|++++.|.|+ +|-+||-.
T Consensus 628 ~-----------------srirVl~p~s~~F~gLpe~~TVGRY-HSlf---A~~~rLP-~el~vTA~s~Dg-~iMaiEH~ 684 (726)
T TIGR01815 628 A-----------------SRIRVLEPDSVLFAGLPEELTVGRY-HSLF---ARSDRLP-KELKVTAESEDG-VIMAIEHR 684 (726)
T ss_pred C-----------------CEEEEECCCEEEECCCCCCEEEEEE-EEEE---ECCCCCC-CCCEEEEEECCC-EEEEEECC
T ss_conf 3-----------------3688836875787278970343003-7675---5645687-423787850687-17320247
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 99849997248773
Q gi|254780195|r 506 NHPWFIGVQYHPEL 519 (544)
Q Consensus 506 ~HpffvgvQfHPEf 519 (544)
..| .-|||||||-
T Consensus 685 ~lP-~AAVQFHPES 697 (726)
T TIGR01815 685 KLP-VAAVQFHPES 697 (726)
T ss_pred CCC-CCEEECCCCH
T ss_conf 687-1125117611
No 82
>KOG0623 consensus
Probab=98.58 E-value=3.8e-08 Score=79.36 Aligned_cols=170 Identities=25% Similarity=0.348 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCCC----CCHHHHHHHHHHHCCCCCHH
Q ss_conf 46888888888878736724167722565672344566216983997377--7865----50168889988740476322
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGKR----GSEGKIAAIKFARENKIPFL 379 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~R----GieGkI~Ai~yARen~iP~L 379 (544)
--.|+..||+|-|+.. +-+.+ + ..+.+.|-++.||- ||.- .-.|...+++---|+..||+
T Consensus 13 n~~si~nal~hlg~~i------~~v~~-------P-~DI~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfm 78 (541)
T KOG0623 13 NVRSIRNALRHLGFSI------KDVQT-------P-GDILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFM 78 (541)
T ss_pred CHHHHHHHHHHCCCEE------EECCC-------C-HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 4788999998638365------54258-------1-22036743760386641278888764324789999986699747
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHCCC-CCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHH
Q ss_conf 355769999999987516889997000356-6664121150112346530015655467402316525785587066886
Q gi|254780195|r 380 GICFGMQMAVIEAARNLAGIPNACSTEFSE-AGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRI 458 (544)
Q Consensus 380 GIClGmQ~avIEfARnvlgl~dAnStEf~~-~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~i 458 (544)
|||+|+|+. | +.|.|-.+ ++-.||..+-.-++.... .+.+. |...|.+-.+|.....
T Consensus 79 gicvGlQaL---F---------~gSvE~p~skGLgvipg~v~RFD~s~k----~VPhI------GWNsc~v~sd~effg~ 136 (541)
T KOG0623 79 GICVGLQAL---F---------DGSVENPPSKGLGVIPGIVGRFDASAK----IVPHI------GWNSCQVGSDSEFFGD 136 (541)
T ss_pred EEHHHHHHH---H---------CCCCCCCCCCCCCCCCCCEECCCCCCC----CCCCC------CCCCCCCCCCCCCCCC
T ss_conf 631457998---6---------364437886764354440110357778----57745------6311545775200256
Q ss_pred HCCCEEEEECCCCCCC----CHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 3798476602523332----78899899978959999869998689998389984999724877327
Q gi|254780195|r 459 YGLDLIPERHRHRYEV----NVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKS 521 (544)
Q Consensus 459 Yg~~~I~ERHRHRYEv----N~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~S 521 (544)
- -|||-|-| |++--..++..+++++-..-.. -+.|---...-+.++||||| ||
T Consensus 137 ~-------p~~~~YFVHSyl~~ek~~~len~~wkiat~kYG~--E~Fi~ai~knN~~AtQFHPE-KS 193 (541)
T KOG0623 137 V-------PNRHVYFVHSYLNREKPKSLENKDWKIATCKYGS--ESFISAIRKNNVHATQFHPE-KS 193 (541)
T ss_pred C-------CCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCC--HHHHHHHHCCCEEEEECCCC-CC
T ss_conf 7-------8734999853113334567898773676404670--88999986076545752654-45
No 83
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.50 E-value=9.5e-06 Score=62.05 Aligned_cols=171 Identities=27% Similarity=0.376 Sum_probs=101.7
Q ss_pred HHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC--HHHHHHHHHHH-------CCCCCHHHHHHHHHHHHH
Q ss_conf 736724167722565672344566216983997377786550--16888998874-------047632235576999999
Q gi|254780195|r 320 SNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS--EGKIAAIKFAR-------ENKIPFLGICFGMQMAVI 390 (544)
Q Consensus 320 ~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi--eGkI~Ai~yAR-------en~iP~LGIClGmQ~avI 390 (544)
..+...+..|..-..+.. ++||+++||||-+--. .|-|+|+.-+| +.+.|.||||=|+|+.+
T Consensus 25 ~aG~~~~~V~~~d~~~~~--------~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~- 95 (231)
T COG0047 25 RAGFEAEDVWHSDLLLGR--------DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS- 95 (231)
T ss_pred HCCCCCEEEEEEECCCCC--------CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH-
T ss_conf 849982499855035677--------74689974887764335732677557899999999868971999853508989-
Q ss_pred HHHHHCCC-CCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEE---ECCCCHHHHHHCC-CEEE
Q ss_conf 99875168-89997000356666412115011234653001565546740231652578---5587066886379-8476
Q gi|254780195|r 391 EAARNLAG-IPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVS---LKEETLISRIYGL-DLIP 465 (544)
Q Consensus 391 EfARnvlg-l~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~---l~~~S~~~~iYg~-~~I~ 465 (544)
| .| |++| | .-+... |-=...+. ...+|...+.|.. +.+.
T Consensus 96 e-----~gLlPGa----l---------------~~N~s~------------~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ 139 (231)
T COG0047 96 E-----AGLLPGA----L---------------TRNESL------------RFECRWVYLRVENNNTPFTSGYEGGEVIP 139 (231)
T ss_pred H-----CCCCCCC----E---------------ECCCCC------------CEEEEEEEEEEECCCCHHHHHCCCCCEEE
T ss_conf 7-----2757761----0---------------247898------------45889899999358987787357885598
Q ss_pred --EECC-CCCCCCHHHHHHHHHCCCEEEEE-----------CCCCCEEEEEEECC-CCEEEEEECCCCCCCCCCCCCH--
Q ss_conf --6025-23332788998999789599998-----------69998689998389-9849997248773278769884--
Q gi|254780195|r 466 --ERHR-HRYEVNVRYREKLEGCGLKFSGF-----------SVDHALPEVVEYIN-HPWFIGVQYHPELKSRPLDPHP-- 528 (544)
Q Consensus 466 --ERHR-HRYEvN~~y~~~le~~Gl~~sg~-----------~~d~~lvEiiEl~~-HpffvgvQfHPEf~Srp~~phP-- 528 (544)
=-|- -||.+-.+..++|+++|.++--. +|+|.+-.|--+.+ .-=.+|.-=|||--++...|.-
T Consensus 140 ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg 219 (231)
T COG0047 140 IPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDG 219 (231)
T ss_pred EEEEECCEEEECCHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCCHHHCEEEECCCCCEEEECCCCHHHHHCCCCCCHH
T ss_conf 77770562477167889987548979999936998540334798996662057769997898648944433202687138
Q ss_pred --HHHHHHH
Q ss_conf --1589999
Q gi|254780195|r 529 --LFVSFIQ 535 (544)
Q Consensus 529 --LF~~fi~ 535 (544)
||.+.++
T Consensus 220 ~~lF~s~~~ 228 (231)
T COG0047 220 LRLFRSARK 228 (231)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 84
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.41 E-value=9.5e-06 Score=62.04 Aligned_cols=403 Identities=19% Similarity=0.230 Sum_probs=219.0
Q ss_pred EEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 99375014444489999999999968982889854455334888888644350787279840025564113322874775
Q gi|254780195|r 6 FITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTAK 85 (544)
Q Consensus 6 ~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~~ 85 (544)
||..|.-||.||-.++..|-+.|+.||++|...|.-|=- +||+--..- -|..-|=||.-|..
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY-IDP~~H~~a-----------------tG~~srNLD~~mm~ 64 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY-IDPGYHTAA-----------------TGRPSRNLDSWMMG 64 (451)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHH-----------------HCCCCCCCCHHHCC
T ss_conf 599548888858999999999998668721665568786-381356676-----------------38856777654469
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEEC--------CCCCCCCCCCHHHHHHH
Q ss_conf 4680125899999988857775774025646024898999970788987899972--------43122212306899999
Q gi|254780195|r 86 ADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEI--------GGTIGDIEVMPFVEAIR 157 (544)
Q Consensus 86 ~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEi--------GGTVGDIEs~pFlEAiR 157 (544)
.+.|+....+..+++|++|||= +++. |.-|...+-.
T Consensus 65 ---------------------------------~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~-~~gSTA~lAk-- 108 (451)
T COG1797 65 ---------------------------------EEGVRALFARAAADADIAVIEGVMGLFDGRGSAT-DTGSTADLAK-- 108 (451)
T ss_pred ---------------------------------HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC-CCCCHHHHHH--
T ss_conf ---------------------------------9899999998627898799961230236887776-7777999999--
Q ss_pred HHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCE-----EEEECCCC-CCHHHHHHHHHHCCC
Q ss_conf 999874977685799997467542256620034789999999974998768-----99923875-899999999864198
Q gi|254780195|r 158 QFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDI-----LLIRADRD-IPEMERRKISLFCNV 231 (544)
Q Consensus 158 Ql~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDi-----ivcRse~~-l~~~~k~KIalfc~V 231 (544)
.++- -+++| +...+--.|-- -=|+-++++ .||+ |+-|--.+ =-+-+|+-|.-.|.|
T Consensus 109 ----~l~~---PVvLV-------id~~~~s~S~A--Aiv~G~~~f--dp~v~iaGVIlNrVgserH~~llr~Ale~~~gv 170 (451)
T COG1797 109 ----LLGA---PVVLV-------VDASGLSRSVA--AIVKGFKHF--DPDVNIAGVILNRVGSERHYELLRDALEEYTGV 170 (451)
T ss_pred ----HHCC---CEEEE-------EECCCHHHHHH--HHHHHHHHC--CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf ----8599---98999-------95752257899--999889861--998825789972477788999999875532798
Q ss_pred CHHHEEECCCCCCH-----HHHH--HHH----HHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-----------CCCC
Q ss_conf 86772403898620-----2668--988----764948899998387888862047899999874-----------1843
Q gi|254780195|r 232 PMSAVIPALDVDDI-----YKVP--LSY----HREGIDSVVLNAFGIENVSLPQIDNWQTFCDRT-----------LSLK 289 (544)
Q Consensus 232 ~~~~Vi~~~Dv~sI-----Y~VP--l~l----~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~-----------~~~~ 289 (544)
+.=.++.--|.-++ --|| ... .-+.+.+.+.+.+.| +.-..+...- ...+
T Consensus 171 ~vlG~lpr~~~l~lp~RHLGLV~a~E~~~~~~~~~~~a~~v~~~vDl--------d~l~~ia~~~~~~~~~~~~~~~~~~ 242 (451)
T COG1797 171 PVLGYLPRDDDLELPSRHLGLVPASERLELEAKLEALAEVVEKHVDL--------DALLEIASSAGPLEPDLSPEPERGN 242 (451)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 57987427855678541326534303444899999999999860789--------8899987436888988553200168
Q ss_pred -CCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHC-CCCEEEECCCCCCC------CC
Q ss_conf -43799995200148134688888888887873672416772256567234456621-69839973777865------50
Q gi|254780195|r 290 -NEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFY-GVHGILVPGGFGKR------GS 361 (544)
Q Consensus 290 -~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~-~~dGIlVPGGFG~R------Gi 361 (544)
..+|||+.=. -.+.=-|.--.|.|+.+|+ ++.+.++-.- +.|- ++|+|.+||||.+- .-
T Consensus 243 ~~~~rIAVA~D-~AF~FyY~~nl~~Lr~~GA------elv~FSPL~D------~~lP~~~D~vYlgGGYPElfA~~L~~n 309 (451)
T COG1797 243 PLGVRIAVARD-AAFNFYYPENLELLREAGA------ELVFFSPLAD------EELPPDVDAVYLGGGYPELFAEELSAN 309 (451)
T ss_pred CCCCEEEEEEC-CHHCCCCHHHHHHHHHCCC------EEEEECCCCC------CCCCCCCCEEEECCCCHHHHHHHHHHC
T ss_conf 76736999854-5100032999999997797------7998578677------779977888996897748899998447
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCE-E
Q ss_conf 168889988740476322355769999999987516889997000356666412115011234653001565546740-2
Q gi|254780195|r 362 EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGAT-M 440 (544)
Q Consensus 362 eGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGT-M 440 (544)
+.+..+|+-+-+...|.+|=|.|+-.. .-.|.|++ ...++.+.++|- ...|+.. +
T Consensus 310 ~~~~~~i~~~~~~G~piyaECGGlMYL-------~~~le~~~-----G~~~~M~Gvlp~------------~~~m~~Rl~ 365 (451)
T COG1797 310 ESMRRAIKAFAAAGKPIYAECGGLMYL-------GESLEDAD-----GDTYEMVGVLPG------------STRMTKRLQ 365 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCEEE-------HHHEECCC-----CCEEEEEEEECC------------CHHHHHHHH
T ss_conf 999999999987699458851551121-------01204268-----966543300033------------013543343
Q ss_pred EECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCC
Q ss_conf 31652578558706688637984766025233327889989997895999986999868999838998499972487732
Q gi|254780195|r 441 RLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELK 520 (544)
Q Consensus 441 RLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~ 520 (544)
.||=.......+|.+...=.+-.=.|=|+-+-...++....+ .-...+| +.+.-+--.+.--+|+=.|=-|.
T Consensus 366 ~lGY~~~~~~~d~~~~~~G~~irGHEFHyS~~~~~~~~~~a~-------~~~~g~g-~~~~~~G~~~gnv~asY~H~H~~ 437 (451)
T COG1797 366 ALGYREAEAVDDTLLLRAGEKIRGHEFHYSRLITEEDAEPAF-------RVRRGDG-IDNGRDGYRSGNVLASYLHLHFA 437 (451)
T ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEE-------EEECCCC-CCCCCCCEEECCEEEEEEEEECC
T ss_conf 166069984377634568863663210300123577675103-------5532557-66665403667767998755115
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 78769884158999999
Q gi|254780195|r 521 SRPLDPHPLFVSFIQAT 537 (544)
Q Consensus 521 Srp~~phPLF~~fi~Aa 537 (544)
|.| -.+..|+++|
T Consensus 438 s~~----~~~~~~v~~~ 450 (451)
T COG1797 438 SNP----AFAARFVAAA 450 (451)
T ss_pred CCH----HHHHHHHHHH
T ss_conf 588----9999999731
No 85
>PRK03619 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=98.33 E-value=5.7e-05 Score=56.47 Aligned_cols=178 Identities=26% Similarity=0.411 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC--HHHH-------HHHHHHHCCCCCHHHH
Q ss_conf 888888878736724167722565672344566216983997377786550--1688-------8998874047632235
Q gi|254780195|r 311 IEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS--EGKI-------AAIKFARENKIPFLGI 381 (544)
Q Consensus 311 ~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi--eGkI-------~Ai~yARen~iP~LGI 381 (544)
..|++.||. ++...|-.. +.|.++|++++||||-+--. -|.| .+++-..+++.|.|||
T Consensus 18 ~~Af~~~G~----~~~~v~~~d---------~~L~~~~~lv~pGGFSyGD~L~aGaia~~~~i~~~i~~f~~~g~~vLGI 84 (223)
T PRK03619 18 AHAIRLAGA----EPVYVWHTD---------TDLDGVDAVVLPGGFSYGDYLRCGAIAAFAPVMQAVVEAAEKGKPVLGI 84 (223)
T ss_pred HHHHHHCCC----CEEEEEECC---------CCCCCCCEEEECCCCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCCEEEE
T ss_conf 999998699----569998447---------9876453899835005653455334765278999999998679977998
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCCHHHCC--CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEE-CCCCHHHH
Q ss_conf 5769999999987516889-99700035--66664121150112346530015655467402316525785-58706688
Q gi|254780195|r 382 CFGMQMAVIEAARNLAGIP-NACSTEFS--EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSL-KEETLISR 457 (544)
Q Consensus 382 ClGmQ~avIEfARnvlgl~-dAnStEf~--~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l-~~~S~~~~ 457 (544)
|=|+|+++ | +||- +| +. ++.. +...|. .+.+ ..+|...+
T Consensus 85 CNGfQiL~-e-----~gLlPga----L~~N~s~r----F~~r~v-----------------------~lkv~~~~s~f~~ 127 (223)
T PRK03619 85 CNGFQILL-E-----AGLLPGA----LTRNENLK----FICRDV-----------------------KLRVENNDTAFTS 127 (223)
T ss_pred CHHHHHHH-H-----CCCCCCC----CCCCCCCC----EEEEEE-----------------------EEEECCCCCCHHC
T ss_conf 72789898-6-----4778862----10269998----798656-----------------------7886589840103
Q ss_pred HHCCC---EEEEECCC-CCCCCHHHHHHHHHCCCEEEEE----CCCCCEEEEEEECC-CCEEEEEECCCCCCCCCCCCC-
Q ss_conf 63798---47660252-3332788998999789599998----69998689998389-984999724877327876988-
Q gi|254780195|r 458 IYGLD---LIPERHRH-RYEVNVRYREKLEGCGLKFSGF----SVDHALPEVVEYIN-HPWFIGVQYHPELKSRPLDPH- 527 (544)
Q Consensus 458 iYg~~---~I~ERHRH-RYEvN~~y~~~le~~Gl~~sg~----~~d~~lvEiiEl~~-HpffvgvQfHPEf~Srp~~ph- 527 (544)
-+... .|-=.|-- ||..+++-.+.|++++.++--. +|+|..-.|--+.+ .--.+|.-=|||--..|...+
T Consensus 128 ~~~~g~~l~ipVAHgEGr~~~~~~~l~~l~~~~qi~~~Y~d~~NPNGS~~~IAGI~~~~GrvlgmMPHPERa~~~~~g~~ 207 (223)
T PRK03619 128 RYEKGEVIRIPIAHGEGNYYADEETLKELEGNGQVVFRYVDETNPNGSVNDIAGICNENGNVLGLMPHPERAVEALLGSD 207 (223)
T ss_pred CCCCCCEEEEEEECCCCCEECCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHEEECCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 78999889887244875335599999999978978999899999988964652858799999888899644635544786
Q ss_pred ---HHHHHHHHHHH
Q ss_conf ---41589999999
Q gi|254780195|r 528 ---PLFVSFIQATV 538 (544)
Q Consensus 528 ---PLF~~fi~Aal 538 (544)
++|.+.|.+..
T Consensus 208 dG~~~f~s~v~~~~ 221 (223)
T PRK03619 208 DGLKLFKSALDAWR 221 (223)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 14999999999975
No 86
>KOG1622 consensus
Probab=98.20 E-value=3.4e-06 Score=65.30 Aligned_cols=156 Identities=24% Similarity=0.339 Sum_probs=76.6
Q ss_pred CCEEEECCCCCCCCCHHHHH--CCCCEEEECCCCCCC------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 41677225656723445662--169839973777865------5016888998874047632235576999999998751
Q gi|254780195|r 325 VQLSWIDAETLEKEDPVKHF--YGVHGILVPGGFGKR------GSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNL 396 (544)
Q Consensus 325 v~i~wIdse~le~~~~~~~L--~~~dGIlVPGGFG~R------GieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnv 396 (544)
+.=-.+.||-+.-....+.+ .+.-||++-||=-+- -++- |+- +-++|.||||.|||++.-.+-+-|
T Consensus 36 vRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp---~if---~~~vpvLGICYGmQ~i~~~~Gg~V 109 (552)
T KOG1622 36 VRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAPSFDP---AIF---ELGVPVLGICYGMQLINKLNGGTV 109 (552)
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCH---HHH---CCCCCCEEEHHHHHHHHHHHCCCC
T ss_conf 98875433101377715666447942999818987322676888983---671---327743020167999999838750
Q ss_pred CCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCH
Q ss_conf 68899970003566664121150112346530015655467402316525785587066886379847660252333278
Q gi|254780195|r 397 AGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNV 476 (544)
Q Consensus 397 lgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~ 476 (544)
.. ++ .-|..+ ..+.....+.+++-..+.+.. +|=-
T Consensus 110 ~~-~~--~RE~G~-----------------------------------~eI~v~~~~~lF~~~~~~~~~-------~Vll 144 (552)
T KOG1622 110 VK-GM--VREDGE-----------------------------------DEIEVDDSVDLFSGLHKTEFM-------TVLL 144 (552)
T ss_pred CC-CC--CCCCCC-----------------------------------CEEECCCHHHHHHHHCCCCEE-------EEEE
T ss_conf 24-62--357787-----------------------------------347758615665432324103-------6610
Q ss_pred HHHHHHH--HCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 8998999--789599998699986899983899849997248773278769884158999
Q gi|254780195|r 477 RYREKLE--GCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 (544)
Q Consensus 477 ~y~~~le--~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi 534 (544)
.+-+.+. -.|+.+.|+|... .+-.+.-...| ..|.|||||-.-+|.. --|+..|+
T Consensus 145 tHgdsl~~v~~g~kv~a~s~n~-~va~i~~e~kk-iyglqfhpEV~~t~~g-~~ll~nFl 201 (552)
T KOG1622 145 THGDSLSKVPEGFKVVAFSGNK-PVAGILNELKK-IYGLQFHPEVTLTPNG-KELLKNFL 201 (552)
T ss_pred CCCCCHHHCCCCCEEEEEECCC-CEEEEHHHHHH-HHCCCCCCCCCCCCCH-HHHHHHHH
T ss_conf 0562064444542467761686-12211011003-2067888831036756-68999899
No 87
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I; InterPro: IPR010075 In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This entry describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=98.16 E-value=2.1e-05 Score=59.61 Aligned_cols=184 Identities=26% Similarity=0.428 Sum_probs=113.9
Q ss_pred HHCCCCCEE----EECCCC-CCCCCHHHHHCCCCEEEECCCCCC--CCCHHHHHHH---HHH-------HCCCCCHHHHH
Q ss_conf 736724167----722565-672344566216983997377786--5501688899---887-------40476322355
Q gi|254780195|r 320 SNYTKVQLS----WIDAET-LEKEDPVKHFYGVHGILVPGGFGK--RGSEGKIAAI---KFA-------RENKIPFLGIC 382 (544)
Q Consensus 320 ~~~~kv~i~----wIdse~-le~~~~~~~L~~~dGIlVPGGFG~--RGieGkI~Ai---~yA-------Ren~iP~LGIC 382 (544)
..+++.++. |=+=.. +.+.. ..-++|+|++||||-+ +==-|.|+|. .=+ -+...|.||||
T Consensus 24 ~~Gv~~~~Vhikqw~~D~~r~~~~r---svfD~D~VvlPGGFSyGDYLRaGAIAa~rvk~p~~~~V~~~A~~G~pVLGiC 100 (264)
T TIGR01737 24 LLGVDAEIVHIKQWYEDKSRLSDQR---SVFDYDAVVLPGGFSYGDYLRAGAIAALRVKSPIMQEVREFAEKGKPVLGIC 100 (264)
T ss_pred HCCCCEEEEEEEECHHHHCCCCCCC---EEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 1499837998652100004787664---1787334886687772357779999987503088999999995598289976
Q ss_pred HHHHHHHHHHHHHCCCC-CCCCHHHCCC----CCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEE---CCCCH
Q ss_conf 76999999998751688-9997000356----6664121150112346530015655467402316525785---58706
Q gi|254780195|r 383 FGMQMAVIEAARNLAGI-PNACSTEFSE----AGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSL---KEETL 454 (544)
Q Consensus 383 lGmQ~avIEfARnvlgl-~dAnStEf~~----~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l---~~~S~ 454 (544)
=|||+.+ -+|| ++ ||+ +..|-.+|++-.. +|==+..+.| ...|-
T Consensus 101 NGFQIL~------E~GLLpG-----fDeDkPlaekPemAL~~N~~-----------------~rFisr~v~LrV~n~~T~ 152 (264)
T TIGR01737 101 NGFQILV------EAGLLPG-----FDEDKPLAEKPEMALLPNAS-----------------LRFISRWVYLRVENADTA 152 (264)
T ss_pred CHHHHHH------HHHHCCC-----CCCCCCCCCCCHHHHHCCCC-----------------CCCEEEEEEEEEEECCCH
T ss_conf 6479999------9762489-----88788743571224420588-----------------974532036899856783
Q ss_pred HHHHHCCCEEEE---ECCC-CCCCC----HHHHHHHHHCC---CEEEE--------ECCCCCEEEE---EEECCCCEEEE
Q ss_conf 688637984766---0252-33327----88998999789---59999--------8699986899---98389984999
Q gi|254780195|r 455 ISRIYGLDLIPE---RHRH-RYEVN----VRYREKLEGCG---LKFSG--------FSVDHALPEV---VEYINHPWFIG 512 (544)
Q Consensus 455 ~~~iYg~~~I~E---RHRH-RYEvN----~~y~~~le~~G---l~~sg--------~~~d~~lvEi---iEl~~Hpffvg 512 (544)
.-+.|.+.+|-. -|== ||.+. .++.++|+++| |+.+. ++|+|..-.| ++-.++ -+|
T Consensus 153 FT~~y~kGev~~~PiAHgEGrYy~~sGke~e~~~~l~~n~qivFrY~d~~G~~~e~~NPNGS~~nIAGi~N~~gn--V~G 230 (264)
T TIGR01737 153 FTKKYKKGEVIRVPIAHGEGRYYADSGKEDETLAELESNDQIVFRYCDEDGDVSEEVNPNGSVDNIAGIVNEEGN--VLG 230 (264)
T ss_pred HHHCCCCCCEEEEEEEECCCCEECCCCCCHHHHHHHHHCCEEEEEEECCCCCEECCCCCCCCCCCEEEEECCCCC--EEE
T ss_conf 663579887887654425872662689975799998547918999767998532454789764671057808987--787
Q ss_pred EECCCCCC-----CC----CCCCCHHHHHHHHH
Q ss_conf 72487732-----78----76988415899999
Q gi|254780195|r 513 VQYHPELK-----SR----PLDPHPLFVSFIQA 536 (544)
Q Consensus 513 vQfHPEf~-----Sr----p~~phPLF~~fi~A 536 (544)
-==|||-- ++ -..--.||.+|++-
T Consensus 231 mMPHPERA~~~~lg~r~eG~~DG~~Lf~~l~~~ 263 (264)
T TIGR01737 231 MMPHPERASEKLLGSRREGADDGLKLFESLVEW 263 (264)
T ss_pred ECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 189807876454068875637799999999971
No 88
>KOG0370 consensus
Probab=98.07 E-value=2e-05 Score=59.74 Aligned_cols=146 Identities=25% Similarity=0.371 Sum_probs=86.7
Q ss_pred CCCEEEECCCCCCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCC
Q ss_conf 6983997377786550-168889988740476322355769999999987516889997000356666412115011234
Q gi|254780195|r 346 GVHGILVPGGFGKRGS-EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKG 424 (544)
Q Consensus 346 ~~dGIlVPGGFG~RGi-eGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~ 424 (544)
++|||++-.|=|+--+ +--+.-.+---++++|.+|||+|-|+.. | +.| |...- |.-..
T Consensus 210 ~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA----~-AaG---akT~K-----------mKyGN-- 268 (1435)
T KOG0370 210 EYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLA----L-AAG---AKTYK-----------MKYGN-- 268 (1435)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH----H-HHC---CCEEE-----------EECCC--
T ss_conf 556179727999905658999999999827998589736669999----8-608---74488-----------63155--
Q ss_pred CCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCC--EEEEECCCCCEEEEE
Q ss_conf 653001565546740231652578558706688637984766025233327889989997895--999986999868999
Q gi|254780195|r 425 DQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGL--KFSGFSVDHALPEVV 502 (544)
Q Consensus 425 ~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl--~~sg~~~d~~lvEii 502 (544)
-| +..||.-... |.-.|. --.|-|-|-+.-.. +|+ -|+-.+... -|++
T Consensus 269 -----------RG-----hNiP~~~~~t-------Grc~IT-SQNHGYAVD~~tLp----~gWk~lFvN~NDgS--NEGI 318 (1435)
T KOG0370 269 -----------RG-----HNIPCTCRAT-------GRCFIT-SQNHGYAVDPATLP----AGWKPLFVNANDGS--NEGI 318 (1435)
T ss_pred -----------CC-----CCCCCEECCC-------CEEEEE-ECCCCEEECCCCCC----CCCCHHEEECCCCC--CCEE
T ss_conf -----------67-----7746220037-------659998-15776153453245----77703204135677--7337
Q ss_pred EECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 83899849997248773278769884158999999987644
Q gi|254780195|r 503 EYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQS 543 (544)
Q Consensus 503 El~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~~ 543 (544)
.-...||| -+|||||-+.-|.+--=||.-|+....+.+..
T Consensus 319 ~Hss~P~f-SvQFHPEat~GP~DTeyLFDiFi~lvkk~kst 358 (1435)
T KOG0370 319 MHSSKPFF-SVQFHPEATPGPHDTEYLFDVFIELVKKSKST 358 (1435)
T ss_pred ECCCCCCE-EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 62798721-16307867899751399999999998887417
No 89
>PRK01175 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=98.07 E-value=0.00084 Score=48.04 Aligned_cols=168 Identities=23% Similarity=0.352 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC--CCCHHHHHHH-----------HHHHCCCC
Q ss_conf 8888888878736724167722565672344566216983997377786--5501688899-----------88740476
Q gi|254780195|r 310 LIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGK--RGSEGKIAAI-----------KFARENKI 376 (544)
Q Consensus 310 i~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~--RGieGkI~Ai-----------~yARen~i 376 (544)
...|++.||. .++..|++ ++-.. .+.|.++|+|++||||-+ +-=-|++.|+ +++ +++.
T Consensus 20 ~~~Af~~aG~----~~~~v~~~--dl~~~--~~~L~~~~~lv~pGGFSyGD~l~aG~~~a~~~~~~~~~~i~~f~-~~g~ 90 (255)
T PRK01175 20 VFKSVRRSGG----EPEYVHIN--DLAAG--RKSVSDYDCLIIPGGFSAGDYIRAGAIFAARLKAVLGKDIREFI-DSGR 90 (255)
T ss_pred HHHHHHHCCC----CEEEEEEE--ECCCC--CCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCC
T ss_conf 9999998599----63899865--23367--66655554899737767643357518899986799999999999-6799
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEE---CCCC
Q ss_conf 3223557699999999875168899970003566664121150112346530015655467402316525785---5870
Q gi|254780195|r 377 PFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSL---KEET 453 (544)
Q Consensus 377 P~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l---~~~S 453 (544)
|.||||=|+|+++ -+||--....+ ..++. ....+-+ +.-+.+ ..+|
T Consensus 91 ~vLGICNGfQiL~------e~gLLPg~~~~--------~~L~~--N~s~rF~---------------~r~v~l~v~~~~~ 139 (255)
T PRK01175 91 PIIGICNGFQVLM------ELGLIPAERPE--------IALTN--NESNRFE---------------CRYTYIKMTSEKC 139 (255)
T ss_pred CEEEECCHHHHHH------HCCCCCCCCCC--------CCCCC--CCCCCEE---------------EEEEEEEEECCCH
T ss_conf 6799801689999------75877899988--------02024--7999878---------------6787999944834
Q ss_pred HHHHHHCCCE--EEEECCC-CCCCC-HHHHHHHHHCCCEEEEE------------CCCCCE--EEEEEECCCCEEEEEEC
Q ss_conf 6688637984--7660252-33327-88998999789599998------------699986--89998389984999724
Q gi|254780195|r 454 LISRIYGLDL--IPERHRH-RYEVN-VRYREKLEGCGLKFSGF------------SVDHAL--PEVVEYINHPWFIGVQY 515 (544)
Q Consensus 454 ~~~~iYg~~~--I~ERHRH-RYEvN-~~y~~~le~~Gl~~sg~------------~~d~~l--vEiiEl~~HpffvgvQf 515 (544)
...+-+.... |-=.|-- ||.+. ++..+.|++++.++--. +|+|.. +..|--++. -.+|.-=
T Consensus 140 ~f~~~~~~~~l~ipvAHgEGrf~~~~~~~l~~l~~n~qi~~rY~d~~G~~~~yp~NPNGS~~~IAGI~n~~G-rvlgmMP 218 (255)
T PRK01175 140 IFVKNLGKGVFQVPVAHAEGRVAVSEDSVLKRLYENDQIVFRYVDENGVYDGYPWNPNGSIDNIAGITNETG-NVIGLMP 218 (255)
T ss_pred HHHHCCCCCEEEEEEECCCCCEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHCEEECCCC-CEEEECC
T ss_conf 666414897799875537685575898999999858965899966998645788899879767208678999-9988789
Q ss_pred CCC
Q ss_conf 877
Q gi|254780195|r 516 HPE 518 (544)
Q Consensus 516 HPE 518 (544)
|||
T Consensus 219 HPE 221 (255)
T PRK01175 219 HPE 221 (255)
T ss_pred CCC
T ss_conf 963
No 90
>KOG3179 consensus
Probab=98.00 E-value=2e-05 Score=59.74 Aligned_cols=164 Identities=24% Similarity=0.295 Sum_probs=94.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC----CCCCCCHHHHHHHHHH---H
Q ss_conf 01481346888888888878736724167722565672344566216983997377----7865501688899887---4
Q gi|254780195|r 300 YIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG----FGKRGSEGKIAAIKFA---R 372 (544)
Q Consensus 300 Y~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG----FG~RGieGkI~Ai~yA---R 372 (544)
|-...|-..|+.+. -+..-+.--+-.-.+.+ .+.|.+++|++|.|- |+.--|= +.-+.++ -
T Consensus 23 yGgy~nvfvsllg~-------ege~wd~frV~~gefP~---~~Dl~ky~gfvIsGS~~dAf~d~dWI--~KLcs~~kkld 90 (245)
T KOG3179 23 YGGYFNVFVSLLGD-------EGEQWDLFRVIDGEFPQ---EEDLEKYDGFVISGSKHDAFSDADWI--KKLCSFVKKLD 90 (245)
T ss_pred HCCHHHHHHHHHCC-------CCCEEEEEEEECCCCCC---HHHHHHHCEEEEECCCCCCCCCCHHH--HHHHHHHHHHH
T ss_conf 15799999998613-------57215789985487887---44653415499957743333540699--99999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCC
Q ss_conf 04763223557699999999875168899970003566664121150112346530015655467402316525785587
Q gi|254780195|r 373 ENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEE 452 (544)
Q Consensus 373 en~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~ 452 (544)
..++|.||||+|-|+. || +.|-+ |. ...+|-.|-||+ -+.++..
T Consensus 91 ~mkkkvlGICFGHQii----ar-a~Gg~-------------Vg-----------------ra~KG~~~~lg~-itivk~~ 134 (245)
T KOG3179 91 FMKKKVLGICFGHQII----AR-AKGGK-------------VG-----------------RAPKGPDLGLGS-ITIVKDA 134 (245)
T ss_pred HHCCCEEEEECCHHHH----HH-HHCCC-------------CC-----------------CCCCCCCCCCCC-EEEEEEC
T ss_conf 5156647882117999----88-61781-------------10-----------------278887444342-3899852
Q ss_pred CHHHHHHC--CC--EEEEECCCCCCCCHHHHHHHH-HCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 06688637--98--476602523332788998999-7895999986999868999838998499972487732787
Q gi|254780195|r 453 TLISRIYG--LD--LIPERHRHRYEVNVRYREKLE-GCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRP 523 (544)
Q Consensus 453 S~~~~iYg--~~--~I~ERHRHRYEvN~~y~~~le-~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp 523 (544)
+.-.+.+| .. .|.+-|+- || |+ -.|...-|.|++-+ +|+.-.++| ++.-|-||||.+-.
T Consensus 135 ~~~~~yFG~~~~~l~IikcHqD--ev-------le~PE~a~llasSe~ce-ve~fs~~~~--~l~fQGHPEyn~ei 198 (245)
T KOG3179 135 EKPEKYFGEIPKSLNIIKCHQD--EV-------LELPEGAELLASSEKCE-VEMFSIEDH--LLCFQGHPEYNKEI 198 (245)
T ss_pred CCCHHHCCCCHHHHHHHHHCCC--CE-------ECCCCHHHHHCCCCCCC-EEEEEECCE--EEEECCCCHHHHHH
T ss_conf 4616432643444218765310--14-------33774454300001152-578983453--79962882343999
No 91
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=97.92 E-value=2e-05 Score=59.77 Aligned_cols=71 Identities=30% Similarity=0.410 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC--HHHHHH--------HHHHHCCCCCHHH
Q ss_conf 888888878736724167722565672344566216983997377786550--168889--------9887404763223
Q gi|254780195|r 311 IEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS--EGKIAA--------IKFARENKIPFLG 380 (544)
Q Consensus 311 ~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi--eGkI~A--------i~yARen~iP~LG 380 (544)
..|++.| +..++..|++.-. +. ...|+++||+++||||.+-.. -|++.| +++..+.+.|.||
T Consensus 16 ~~Af~~a----G~~~~~V~~~dl~-~~---~~~L~~~~~lv~pGGFSyGD~l~ag~~~a~s~~~~~~l~~f~~~g~~vLG 87 (238)
T cd01740 16 AYAFELA----GFEAEDVWHNDLL-AG---RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLG 87 (238)
T ss_pred HHHHHHC----CCCEEEEEECCCC-CC---CCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 9999986----9926999810165-66---46611075899868667766655567887481130899997548974898
Q ss_pred HHHHHHHHH
Q ss_conf 557699999
Q gi|254780195|r 381 ICFGMQMAV 389 (544)
Q Consensus 381 IClGmQ~av 389 (544)
||=|||+++
T Consensus 88 ICNGfQiL~ 96 (238)
T cd01740 88 ICNGFQILV 96 (238)
T ss_pred ECHHHHHHH
T ss_conf 530567888
No 92
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.91 E-value=0.00012 Score=54.01 Aligned_cols=79 Identities=23% Similarity=0.489 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC-----CCHHHHHHHHHHHCCCCC
Q ss_conf 813468888888888787367241677225656723445662169839973777865-----501688899887404763
Q gi|254780195|r 303 LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKR-----GSEGKIAAIKFARENKIP 377 (544)
Q Consensus 303 l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~R-----GieGkI~Ai~yARen~iP 377 (544)
|+-+.---.++|+-++ ..+..|+- . .+.|+++||+++|||=-+- --.|....++-.-+++.|
T Consensus 8 lQG~v~EH~~~l~~~~-----~~e~~~Vk-------~-~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~P 74 (194)
T COG0311 8 LQGAVEEHLEALEKAG-----GAEVVEVK-------R-PEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLP 74 (194)
T ss_pred ECCCHHHHHHHHHHHC-----CCCEEEEC-------C-HHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 5046899999998605-----87359971-------7-788553767895495078999999873848999999976996
Q ss_pred HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 223557699999999875168
Q gi|254780195|r 378 FLGICFGMQMAVIEAARNLAG 398 (544)
Q Consensus 378 ~LGIClGmQ~avIEfARnvlg 398 (544)
.+|.|-||=+. |+.+.+
T Consensus 75 v~GTCAGlIlL----akei~~ 91 (194)
T COG0311 75 VFGTCAGLILL----AKEILD 91 (194)
T ss_pred EEEECHHHHHH----HHHHCC
T ss_conf 47751425653----465508
No 93
>pfam07685 GATase_3 CobB/CobQ-like glutamine amidotransferase domain.
Probab=97.90 E-value=7.5e-06 Score=62.81 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=50.1
Q ss_pred HHCCCCEEEECCCCCCCCC------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEE
Q ss_conf 6216983997377786550------1688899887404763223557699999999875168899970003566664121
Q gi|254780195|r 343 HFYGVHGILVPGGFGKRGS------EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIA 416 (544)
Q Consensus 343 ~L~~~dGIlVPGGFG~RGi------eGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~ 416 (544)
...++|+|++|||+...-- .|+..+++-+.+++.|+||||.|||++- +. +.|-...|.+....|.+.
T Consensus 4 ~p~~~D~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~G~pi~giCGG~q~Lg----~~---i~D~~~~~~~g~~~~glG 76 (158)
T pfam07685 4 LPGDADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQMLG----ET---IIDGIEGTAGGERVEGLG 76 (158)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHH----HH---HCCCCCCCCCCCCCCCCC
T ss_conf 99998799989954099999998775579999999977996999875889876----55---005655657776032014
Q ss_pred CCCH
Q ss_conf 1501
Q gi|254780195|r 417 LMSE 420 (544)
Q Consensus 417 ~l~e 420 (544)
++|-
T Consensus 77 llp~ 80 (158)
T pfam07685 77 LLDI 80 (158)
T ss_pred CCCE
T ss_conf 4306
No 94
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.80 E-value=0.0053 Score=42.26 Aligned_cols=132 Identities=14% Similarity=0.236 Sum_probs=79.4
Q ss_pred CCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC-----H
Q ss_conf 43437999952001481346888888888878736724167722565672344566216983997377786550-----1
Q gi|254780195|r 288 LKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS-----E 362 (544)
Q Consensus 288 ~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi-----e 362 (544)
+...++||+.-. -.+.=-|.--++.|+.+| ++.+.+.-. + +.|-++||+.+||||.+-=. .
T Consensus 229 ~~~~~rIavA~D-~AF~FyY~dnl~~L~~~a-------elv~FSPl~--D----~~LP~~dglylgGGyPEl~a~~Ls~n 294 (432)
T PRK13896 229 PDTDQTVAVADD-SAFCFRYPATRERLRERA-------DVVTFSPVA--G----DPLPDCDGVYLPGGYPELHGEALADG 294 (432)
T ss_pred CCCCCEEEEEEC-CCCCCCCHHHHHHHHHCC-------CEEEECCCC--C----CCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 888976999975-862701789999998478-------889876635--7----98998898984799803789998608
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 68889988740476322355769999999987516889997000356666412115011234653001565546740231
Q gi|254780195|r 363 GKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRL 442 (544)
Q Consensus 363 GkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRL 442 (544)
..+..++-+-+++.|.++-|.||... .+ .|.|. +...+|...++|-.... .....+|
T Consensus 295 ~~l~si~~~a~~G~PiyAECGGlMyL----~~---~l~~~-----~g~~~~M~Gvlp~~~~m-----------~~r~~~l 351 (432)
T PRK13896 295 PALDELGARAADGLPVLGECGGLMAL----AE---SLTTT-----DGDTYEMAGVLPADVRM-----------QDRYQAL 351 (432)
T ss_pred HHHHHHHHHHHCCCCEEEECCCHHHH----HH---HHCCC-----CCCEEEEEEEECEEEEE-----------CCCCCCC
T ss_conf 78999999998699789987308998----43---51657-----99887725135428897-----------7785544
Q ss_pred CCEEEEECCCCHHH
Q ss_conf 65257855870668
Q gi|254780195|r 443 GAYDVSLKEETLIS 456 (544)
Q Consensus 443 G~~~~~l~~~S~~~ 456 (544)
|-.......++...
T Consensus 352 GY~~~~~~~~~~~~ 365 (432)
T PRK13896 352 DHVELRATGDTLTA 365 (432)
T ss_pred CCEEEEECCCCCCC
T ss_conf 75599963786246
No 95
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.75 E-value=7e-05 Score=55.80 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC----HHHHHHHHHHHCCCCCH
Q ss_conf 81346888888888878736724167722565672344566216983997377786550----16888998874047632
Q gi|254780195|r 303 LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS----EGKIAAIKFARENKIPF 378 (544)
Q Consensus 303 l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi----eGkI~Ai~yARen~iP~ 378 (544)
..+.|....+++..++ .++.++......... ...+.++|++++|||+..... +.++..++.+..++.|.
T Consensus 10 ~~~~~~~~~~~l~~~~------~~~~~i~~~~~~~~~-~~~~~~~d~liipgg~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (115)
T cd01653 10 EELELASPLDALREAG------AEVDVVSPDGGPVES-DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPI 82 (115)
T ss_pred CHHHHHHHHHHHHHCC------CEEEEEECCCCCCCC-CCCHHCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHCCCEE
T ss_conf 2899999999999779------979999658998666-576200899998998632999863999999999999869989
Q ss_pred HHHHHHHHHH
Q ss_conf 2355769999
Q gi|254780195|r 379 LGICFGMQMA 388 (544)
Q Consensus 379 LGIClGmQ~a 388 (544)
+|+|.|+|++
T Consensus 83 ~~~c~g~~~l 92 (115)
T cd01653 83 LGICLGAQLL 92 (115)
T ss_pred EEECHHHHHH
T ss_conf 9988588999
No 96
>KOG1559 consensus
Probab=97.72 E-value=0.00023 Score=52.08 Aligned_cols=171 Identities=23% Similarity=0.350 Sum_probs=88.3
Q ss_pred CCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH--C-----CCCCHHHHHHHHHHHHHHHH--HHCCCCCCCCHHHC
Q ss_conf 234456621698399737778655016888998874--0-----47632235576999999998--75168899970003
Q gi|254780195|r 337 KEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAR--E-----NKIPFLGICFGMQMAVIEAA--RNLAGIPNACSTEF 407 (544)
Q Consensus 337 ~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yAR--e-----n~iP~LGIClGmQ~avIEfA--Rnvlgl~dAnStEf 407 (544)
++.....|+-++||+.|||.-.||---++.-+-|-. | ..-|..|||||+.++.+=.. |..+--.|| ..
T Consensus 102 Ee~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~--vd- 178 (340)
T KOG1559 102 EEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDA--VD- 178 (340)
T ss_pred HHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCC--CC-
T ss_conf 899999998736057417432224099999999988876067866362124345389999998557068775032--02-
Q ss_pred CCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHH---HHHHH
Q ss_conf 566664121150112346530015655467402316525785587066886379847660252333278899---89997
Q gi|254780195|r 408 SEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYR---EKLEG 484 (544)
Q Consensus 408 ~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~---~~le~ 484 (544)
.-++-++.. ..+.-|||= .--|--++.++--.-.+. ..|+|.+.|+-. +.|.+
T Consensus 179 --------~AssLqF~~--------nvn~~~t~F------QrFPpELLkkL~~dcLvm--q~Hk~gisp~nF~~N~~Ls~ 234 (340)
T KOG1559 179 --------VASSLQFVG--------NVNIHGTMF------QRFPPELLKKLSTDCLVM--QNHKFGISPKNFQGNPALSS 234 (340)
T ss_pred --------CCCCEEEEC--------CCCEEEHHH------HHCCHHHHHHHCCCHHEE--ECCCCCCCHHHCCCCHHHHH
T ss_conf --------135302303--------554001157------548999998735231100--03323446230457988997
Q ss_pred CCCEEEEECCCC---CEEEEEEECCCCEEEEEECCCC-----CCCCCCCCC---HHHHHHHHHH
Q ss_conf 895999986999---8689998389984999724877-----327876988---4158999999
Q gi|254780195|r 485 CGLKFSGFSVDH---ALPEVVEYINHPWFIGVQYHPE-----LKSRPLDPH---PLFVSFIQAT 537 (544)
Q Consensus 485 ~Gl~~sg~~~d~---~lvEiiEl~~HpffvgvQfHPE-----f~Srp~~ph---PLF~~fi~Aa 537 (544)
=+.+.-++.|+ ..|..+|-...| --|+||||| +.|.- -|| .+=.++-.|.
T Consensus 235 -FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafEWgss~-IpHsedAiqvtqhaA~ 295 (340)
T KOG1559 235 -FFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFEWGSSD-IPHSEDAIQVTQHAAN 295 (340)
T ss_pred -HHHHEEEECCCCCEEEEEEECCEECC-CEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHH
T ss_conf -87653330179850798852030124-1004566755743235577-9987217899999999
No 97
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.70 E-value=3.9e-05 Score=57.61 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=43.7
Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC------CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 873672416772256567234456621698399737778655------0168889988740476322355769999
Q gi|254780195|r 319 VSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG------SEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 319 ~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RG------ieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
......|++.|++... .|.++|.|++||+=-... -.|.-.+|+-+++++.|+||||.|||++
T Consensus 18 l~~~~~v~v~~v~~~~--------~l~~~D~iIlPGsK~t~~DL~~l~~~Gl~~~i~~~~~~g~~vlgICGGyQmL 85 (194)
T cd01750 18 LAREPGVDVRYVEVPE--------GLGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQML 85 (194)
T ss_pred HHCCCCCEEEEECCCC--------CCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 6006993899967977--------6466999998998838999999987497999999997599789973656730
No 98
>KOG0026 consensus
Probab=97.68 E-value=8.9e-05 Score=55.05 Aligned_cols=172 Identities=19% Similarity=0.258 Sum_probs=84.3
Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHH--HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 87367241677225656723445662169839973777865501688--8998874047632235576999999998751
Q gi|254780195|r 319 VSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKI--AAIKFARENKIPFLGICFGMQMAVIEAARNL 396 (544)
Q Consensus 319 ~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI--~Ai~yARen~iP~LGIClGmQ~avIEfARnv 396 (544)
.+.+.++.+-.=|.-..++ .+ -.+-+++|+-+|=|.-. ++-| .++++ -.-+||.||+|.|.|++-=.|.-.|
T Consensus 40 ~e~g~~~~VyRNDeiTV~E---l~-~~NP~~LliSPGPG~P~-DsGIs~~~i~~-f~~~iP~fGvCMGlQCi~e~fGGkv 113 (223)
T KOG0026 40 GELGCHFEVYRNDELTVEE---LK-RKNPRGLLISPGPGTPQ-DSGISLQTVLE-LGPLVPLFGVCMGLQCIGEAFGGKI 113 (223)
T ss_pred HCCCCCEEEEECCCCCHHH---HH-HCCCCCEEECCCCCCCC-CCCCHHHHHHH-HCCCCCEEEEEECHHHHHHHHCCEE
T ss_conf 1258717998467311788---86-25988078569998976-45424899998-5787855656400344456528576
Q ss_pred CCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCH
Q ss_conf 68899970003566664121150112346530015655467402316525785587066886379847660252333278
Q gi|254780195|r 397 AGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNV 476 (544)
Q Consensus 397 lgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~ 476 (544)
+. ++.-++.=- .+....+++| .+|-|. | ..+..+.-|. |.. -
T Consensus 114 -----~~------a~~~i~HGK---------~S~i~~D~~~---~~G~f~-----g------~~q~~~V~RY-HSL---a 155 (223)
T KOG0026 114 -----VR------SPFGVMHGK---------SSMVHYDEKG---EEGLFS-----G------LSNPFIVGRY-HSL---V 155 (223)
T ss_pred -----EC------CCCCEEECC---------CCCCCCCCCC---CCCCCC-----C------CCCCEEEEEE-EEE---E
T ss_conf -----30------575246245---------3332237754---332102-----7------9987277765-440---0
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 899899978959999869998689998389984999724877327876988415899999
Q gi|254780195|r 477 RYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536 (544)
Q Consensus 477 ~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A 536 (544)
--...|-..-|.++++.+|| ++-..--+.....-|||||||--- ....|-....|++-
T Consensus 156 ~~~sSlP~d~L~VTawTEnG-~iMgaRHkKY~~ieGVQfHPESIl-teeGk~~irNflni 213 (223)
T KOG0026 156 IEKDSFPSDELEVTAWTEDG-LVMAARHRKYKHIQGVQFHPESII-TTEGKTIVRNFIKI 213 (223)
T ss_pred ECCCCCCHHHEEEEEECCCC-EEEEEECCCCEECCCEEECCHHHH-HHHHHHHHHHHHHH
T ss_conf 01356871030456641385-788741233100232232607764-46658999999875
No 99
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.67 E-value=9.1e-05 Score=55.00 Aligned_cols=87 Identities=25% Similarity=0.375 Sum_probs=64.6
Q ss_pred EEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC----HHHHHHHHH
Q ss_conf 9952001481346888888888878736724167722565672344566216983997377786550----168889988
Q gi|254780195|r 295 AIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS----EGKIAAIKF 370 (544)
Q Consensus 295 aiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi----eGkI~Ai~y 370 (544)
+++.......+.+.+..+++.+++ ....++.....+... ...+..+|++++|||...... ...+..++.
T Consensus 2 ~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~d~vii~gg~~~~~~~~~~~~~~~~i~~ 74 (92)
T cd03128 2 AVLLFGGSEELELASPLDALREAG------AEVDVVSPDGGPVES-DVDLDDYDGLILPGGPGTPDDLAWDEALLALLRE 74 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCC------CEEEEEECCCCCCCC-CCCHHHCCEEEECCCCCCCCCCHHCHHHHHHHHH
T ss_conf 899569945899999999999779------979999538996445-3686458899978998664210109899999999
Q ss_pred HHCCCCCHHHHHHHHHHH
Q ss_conf 740476322355769999
Q gi|254780195|r 371 ARENKIPFLGICFGMQMA 388 (544)
Q Consensus 371 ARen~iP~LGIClGmQ~a 388 (544)
+.+++.|.+|+|.|+|++
T Consensus 75 ~~~~~~~i~~~c~G~~~l 92 (92)
T cd03128 75 AAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHCCCEEEEECCHHHHC
T ss_conf 998799799999047539
No 100
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=97.16 E-value=0.0016 Score=45.91 Aligned_cols=192 Identities=19% Similarity=0.243 Sum_probs=105.7
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99937501444448999999999996898288985445533488888864435078727984002556411332287477
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTA 84 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~ 84 (544)
||||| .-|+.||-++++.+.+.|+.+|++|...| |.|-|- ++...+-|--.+.+..+...+
T Consensus 2 ifI~G-T~T~vGKT~vt~~L~~~l~~~G~~v~~~K-------------Pv~tG~-----~~~~~~~Da~~~~~~~~~~~~ 62 (223)
T PRK00090 2 LFVTG-TDTGVGKTVVTAALAQALREQGYRVAGYK-------------PVQSGC-----DGGLRNGDALALQRLSGLPLD 62 (223)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------------EEEECC-----CCCCCCHHHHHHHHHHCCCCC
T ss_conf 89986-89997699999999999997899489975-------------120489-----889972799999998089998
Q ss_pred CCC--CCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 546--80125899999988857775774025646024898999970788987899972431--22212306899999999
Q gi|254780195|r 85 KAD--NITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGT--IGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 85 ~~~--niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGT--VGDIEs~pFlEAiRQl~ 160 (544)
... .+.=-.=.+-.+..++.| ++++ .++|++.+.+.+++.|+++||=-|- |+=-++.-+.+=++++
T Consensus 63 ~~~~~p~~~~~p~sP~~aa~~~g----~~i~-----~~~i~~~~~~l~~~~d~vlvEGaGGl~~Pl~~~~~~~Dla~~l- 132 (223)
T PRK00090 63 YELVNPYRFEEPLSPHLAARLEG----VTID-----LEKISAALRELAQQADLVLVEGAGGLLVPLTDDLTLADLAAQL- 132 (223)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHC----CCCC-----HHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH-
T ss_conf 67605402588989899999909----8468-----9999999999983189899946886556756787889999996-
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEEC--CCCCCHHHHHHHHHHCCCCHHHEE
Q ss_conf 87497768579999746754225662003478999999997499876-899923--875899999999864198867724
Q gi|254780195|r 161 NEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPD-ILLIRA--DRDIPEMERRKISLFCNVPMSAVI 237 (544)
Q Consensus 161 ~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPD-iivcRs--e~~l~~~~k~KIalfc~V~~~~Vi 237 (544)
+- .++.| += +.+++.+ -|=-++..|++.|+.-- +|+=|- +..+.++.++-|.-++++|.=.+|
T Consensus 133 ---~~---pvILV--~~-~~lG~in-----htllt~eal~~~gl~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvPvLG~i 198 (223)
T PRK00090 133 ---QL---PVILV--VG-VKLGCIN-----HTLLTLEAIRARGLPLAGWVANGVPPEGLRHAENLATLAELLPAPLLGRL 198 (223)
T ss_pred ---CC---CEEEE--EC-CCCCHHH-----HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf ---88---98999--76-9888099-----99998999996899489999968588366777689999985499889975
Q ss_pred EC
Q ss_conf 03
Q gi|254780195|r 238 PA 239 (544)
Q Consensus 238 ~~ 239 (544)
.-
T Consensus 199 P~ 200 (223)
T PRK00090 199 PY 200 (223)
T ss_pred CC
T ss_conf 89
No 101
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.03 E-value=0.0017 Score=45.78 Aligned_cols=173 Identities=15% Similarity=0.135 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC------HHHHHHHHHHHCCCCCHH
Q ss_conf 46888888888878736724167722565672344566216983997377786550------168889988740476322
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS------EGKIAAIKFARENKIPFL 379 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi------eGkI~Ai~yARen~iP~L 379 (544)
-|.--+|.|+.+| .++.+.+.-. + +.|-++||+.+||||.+-=. ..+..+++-+-+++.|.+
T Consensus 12 yY~enl~~L~~~G------aelv~FSPl~--d----~~lP~~d~lylgGGyPE~~a~~Ls~N~~~~~~ir~~~~~G~Piy 79 (198)
T cd03130 12 YYPENLELLEAAG------AELVPFSPLK--D----EELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIY 79 (198)
T ss_pred ECHHHHHHHHHCC------CEEEEECCCC--C----CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 5799999999889------9789877767--8----88998768982799875889999767999999999998499779
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH
Q ss_conf 35576999999998751688999700035666641211501123465300156554674023165257855870668863
Q gi|254780195|r 380 GICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY 459 (544)
Q Consensus 380 GIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY 459 (544)
+.|.||+.. +|. +.|. +...+|.+.++|-.. .|+.-++||-.......++.+...=
T Consensus 80 AECGGlMyL----~~~---i~~~-----~G~~~~M~Gllp~~~------------~m~~rl~lGY~~~~~~~~~~~~~~g 135 (198)
T cd03130 80 AECGGLMYL----GES---LDDE-----EGQSYPMAGVLPGDA------------RMTKRLGLGYREAEALGDTLLGKKG 135 (198)
T ss_pred EECHHHHHH----HHH---CCCC-----CCCEEEEEEEEEEEE------------EECCCCCCCEEEEEECCCCCCCCCC
T ss_conf 982048887----422---0558-----998975021151688------------9777632563899982786223799
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC--EEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 79847660252333278899899978959999869998--689998389984999724877327876
Q gi|254780195|r 460 GLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHA--LPEVVEYINHPWFIGVQYHPELKSRPL 524 (544)
Q Consensus 460 g~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~--lvEiiEl~~HpffvgvQfHPEf~Srp~ 524 (544)
..-.-.|=|+-+.+.++.- -..+.-....+. --+..-.. =.+|...|--|-|.|.
T Consensus 136 ~~lrGHEFHyS~~~~~~~~-------~~~~~~~~~~g~~~~~~G~~~~---n~~asY~H~h~~~~p~ 192 (198)
T cd03130 136 TTLRGHEFHYSRLEPPPEP-------DFAATVRRGRGIDGGEDGYVYG---NVLASYLHLHWASNPD 192 (198)
T ss_pred CEEEEEEEEEEEEECCCCC-------CCEEEEEECCCCCCCCCEEEEC---CEEEEEEEECCCCCHH
T ss_conf 6888777551040318987-------5207998156998882789989---9999987867873957
No 102
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=96.77 E-value=0.028 Score=37.04 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=39.5
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 2399993750144444899999999999689828898544553348
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSD 47 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD 47 (544)
||+||+|| =-|+||-.+|||++..+-.+|.||-.+-.||==|..
T Consensus 1 mr~i~~~G--KGGVGKTT~AaA~A~~~A~~G~rvLlvStDPAhsL~ 44 (304)
T pfam02374 1 MRWIFFGG--KGGVGKTTVSCATAVRLSEQGKKVLLVSTDPAHSLS 44 (304)
T ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 91999957--985748999999999999589929999469721488
No 103
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=96.67 E-value=0.031 Score=36.69 Aligned_cols=185 Identities=19% Similarity=0.269 Sum_probs=104.4
Q ss_pred CCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH-HH------------HHCCCCEEEECCC-
Q ss_conf 437999952001481346888888888878736724167722565672344-56------------6216983997377-
Q gi|254780195|r 290 NEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDP-VK------------HFYGVHGILVPGG- 355 (544)
Q Consensus 290 ~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~-~~------------~L~~~dGIlVPGG- 355 (544)
++++|+|+-=--+-.++=.-+..-|. .....|++.|+-.+.....+. .+ .-+++||++|.|-
T Consensus 34 RpL~I~iLNLMP~K~~TE~Q~lRlL~----~tplqv~~~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~~DGlIITGAP 109 (302)
T PRK05368 34 RPLKIGILNLMPKKIETETQFLRLLG----NTPLQVDLHLLRIDSHESKNTPAEHLNNFYRTFEDIKDQKFDGLIVTGAP 109 (302)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHC----CCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 43136877078970899999999837----98735899998734446899879999999764999965877669972898
Q ss_pred -----CCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCC
Q ss_conf -----786-55016888998874047632235576999999998751688999700035666641211501123465300
Q gi|254780195|r 356 -----FGK-RGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEK 429 (544)
Q Consensus 356 -----FG~-RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~ 429 (544)
|-. .=++-...-..||++|-...|.||.|-|.|+- +--|++-- .+++-
T Consensus 110 vE~l~Fe~V~YW~El~~I~dws~~~v~stl~iCWaA~AaL~----~~ygI~K~--------------~l~~K-------- 163 (302)
T PRK05368 110 VELLPFEDVDYWDELREILDWAKTHVTSTLFICWAAQAALY----HLYGIPKY--------------TLPEK-------- 163 (302)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH----HHHCCCCE--------------ECCCC--------
T ss_conf 77788553741999999999998626522567499999999----97099710--------------06873--------
Q ss_pred CCCCCCCCCEEEECCEEEE-ECCCCHHHHHHCCCEEEEEC-CCCCCCCHHHHHHHHH-CCCEEEEECCCCCEEEEEEECC
Q ss_conf 1565546740231652578-55870668863798476602-5233327889989997-8959999869998689998389
Q gi|254780195|r 430 RLPSDDLGATMRLGAYDVS-LKEETLISRIYGLDLIPERH-RHRYEVNVRYREKLEG-CGLKFSGFSVDHALPEVVEYIN 506 (544)
Q Consensus 430 ~~~~~~~GGTMRLG~~~~~-l~~~S~~~~iYg~~~I~ERH-RHRYEvN~~y~~~le~-~Gl~~sg~~~d~~lvEiiEl~~ 506 (544)
.-|-|+.. +.+.+.+-+=.... ..==| || -|++ .+++++ .+|.+-+.|++.+ +-++.-++
T Consensus 164 -----------~fGVf~h~~~~~~~pL~rGfdd~-f~~PhSR~-tei~---~~~i~~~~~L~ILa~s~e~G-~~l~~s~~ 226 (302)
T PRK05368 164 -----------LSGVFEHRVLVPHHPLLRGFDDS-FLVPHSRY-TEVR---EEDIRAATGLEILAESEEAG-VYLFASKD 226 (302)
T ss_pred -----------EEEEECCCCCCCCCHHHCCCCCC-CCCCCCCC-CCCC---HHHHHHCCCCEEEECCCCCC-CEEEECCC
T ss_conf -----------58751223468998001378765-30674122-3689---99995088967986367777-16998289
Q ss_pred CCEEEEEECCCCCCCC
Q ss_conf 9849997248773278
Q gi|254780195|r 507 HPWFIGVQYHPELKSR 522 (544)
Q Consensus 507 HpffvgvQfHPEf~Sr 522 (544)
+. ++=+|-||||-..
T Consensus 227 ~r-~vfi~GH~EYd~~ 241 (302)
T PRK05368 227 KR-IVFVTGHPEYDAD 241 (302)
T ss_pred CC-EEEEECCCCCCHH
T ss_conf 88-6888278666754
No 104
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=96.65 E-value=0.081 Score=33.70 Aligned_cols=177 Identities=18% Similarity=0.177 Sum_probs=90.6
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCH
Q ss_conf 14444489999999999968982889854455334888888644350787279840025564113322874775468012
Q gi|254780195|r 12 VSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTAKADNITA 91 (544)
Q Consensus 12 ~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~~~~niT~ 91 (544)
=.|.||-.+|++++..|..+|+||..+.+||..|.....+...+..+..... +..+..+........-..
T Consensus 7 KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---- 76 (212)
T pfam01656 7 KGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEG------LEIVDAQPLQHIAAAIVP---- 76 (212)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCC------CHHCCCCCHHHHHHEEEC----
T ss_conf 9980699999999999997899789983899996258865876434444441------010112100245642224----
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCH--------HHH-HHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 589999998885777577402564602--------489-89999707889878999724312221230689999999987
Q gi|254780195|r 92 GRIYKNVIDRERRGDYLGTTVQVIPHV--------TNE-IKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNE 162 (544)
Q Consensus 92 Gkiy~~vi~kER~G~ylG~TVQvIPHv--------Tde-Ik~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e 162 (544)
.....-+.++|-- ... .........+++|++|+...+..++. .+..+..
T Consensus 77 --------------~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~-------~~~al~~- 134 (212)
T pfam01656 77 --------------SRNLDPLLLIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGEL-------TANALVA- 134 (212)
T ss_pred --------------CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH-------HHHHHHC-
T ss_conf --------------555587465335015667777779999998766604998999479975599-------9999983-
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CEEEEECCCC---CCHHHHHHHHHHCCCC
Q ss_conf 49776857999974675422566200347899999999749987-6899923875---8999999998641988
Q gi|254780195|r 163 FSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHP-DILLIRADRD---IPEMERRKISLFCNVP 232 (544)
Q Consensus 163 ~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqP-DiivcRse~~---l~~~~k~KIalfc~V~ 232 (544)
.+.+.|=+ .....=-.-++.-++.++.+|+.. -+++-|-+.. ......+.+...+.++
T Consensus 135 -----ad~vivv~-------~p~~~sl~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~ 196 (212)
T pfam01656 135 -----ADILVVPI-------EPEGVAVLGAQRLLELVERLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIP 196 (212)
T ss_pred -----CCEEEEEE-------CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf -----99899994-------897699999999999999859962299991488998366307899999997899
No 105
>pfam04204 HTS Homoserine O-succinyltransferase.
Probab=96.57 E-value=0.033 Score=36.55 Aligned_cols=185 Identities=20% Similarity=0.288 Sum_probs=102.4
Q ss_pred CCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH-HH------------HHCCCCEEEECCC-
Q ss_conf 437999952001481346888888888878736724167722565672344-56------------6216983997377-
Q gi|254780195|r 290 NEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDP-VK------------HFYGVHGILVPGG- 355 (544)
Q Consensus 290 ~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~-~~------------~L~~~dGIlVPGG- 355 (544)
++.+|+|+-=--+=.++=.-+..-|. .....|++.|+-.+.-...+. .+ .-+.+||++|.|-
T Consensus 33 RpL~I~iLNLMP~K~~TE~Q~lRlL~----ntplqv~v~~~~~~sh~~knt~~~hl~~fY~~f~~ik~~~~DGlIITGAP 108 (298)
T pfam04204 33 RPLRIGILNLMPKKIETETQLLRLLG----NTPLQVEVTLLRMSSHESKNTPAEHLESFYRTFDEIKDEKFDGLIITGAP 108 (298)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHC----CCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 43125777068983899999999857----88744899998734446899878999999871999965887569972898
Q ss_pred -----CCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCC
Q ss_conf -----786-55016888998874047632235576999999998751688999700035666641211501123465300
Q gi|254780195|r 356 -----FGK-RGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEK 429 (544)
Q Consensus 356 -----FG~-RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~ 429 (544)
|-. .=++-....+.||++|-...|.||.|-|.|+- .--|++-- .+++-
T Consensus 109 vE~l~FeeV~YW~El~~I~dWs~~~v~Stl~iCWaAqAaL~----~~ygI~K~--------------~l~~K-------- 162 (298)
T pfam04204 109 VEHLPFEDVDYWEELTEIMDWSKTNVTSTLHICWGAQAALY----HFYGIPKH--------------LLPEK-------- 162 (298)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH----HHHCCCCC--------------CCCCC--------
T ss_conf 77788553741999999999998625440457499999999----98199800--------------17874--------
Q ss_pred CCCCCCCCCEEEECCEEEEE-CCCCHHHHHHCCCEEEEECCCCC-CCCHHHHHHHH-HCCCEEEEECCCCCEEEEEEECC
Q ss_conf 15655467402316525785-58706688637984766025233-32788998999-78959999869998689998389
Q gi|254780195|r 430 RLPSDDLGATMRLGAYDVSL-KEETLISRIYGLDLIPERHRHRY-EVNVRYREKLE-GCGLKFSGFSVDHALPEVVEYIN 506 (544)
Q Consensus 430 ~~~~~~~GGTMRLG~~~~~l-~~~S~~~~iYg~~~I~ERHRHRY-EvN~~y~~~le-~~Gl~~sg~~~d~~lvEiiEl~~ 506 (544)
.-|-|+..+ .+++.+-+=... ...==|- || |++. ++++ ..+|.+-+.|++.+ +-++.-++
T Consensus 163 -----------lfGVf~h~~~~~~~pLlrGfdd-~f~~PhS-R~t~i~~---~~i~~~~~L~iLa~s~~~G-~~l~~~~d 225 (298)
T pfam04204 163 -----------LFGVFRHRVLDPHSPLLRGFDD-EFYAPHS-RHTEVRR---EDIEAVPGLEILAESEEAG-VYLVASKD 225 (298)
T ss_pred -----------EEEEECCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCH---HHHHCCCCCEEEECCCCCC-EEEEECCC
T ss_conf -----------5885123457899801047876-5306742-3346998---8971378847986778776-17998289
Q ss_pred CCEEEEEECCCCCCCC
Q ss_conf 9849997248773278
Q gi|254780195|r 507 HPWFIGVQYHPELKSR 522 (544)
Q Consensus 507 HpffvgvQfHPEf~Sr 522 (544)
+. .+=+|-||||-+.
T Consensus 226 ~r-~vf~~GH~EYd~~ 240 (298)
T pfam04204 226 GR-QVFVTGHPEYDAD 240 (298)
T ss_pred CC-EEEEECCCCCCHH
T ss_conf 88-6888278666754
No 106
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.52 E-value=0.098 Score=33.11 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=85.5
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 99993750144444899999999999689828898544553348-88888644350787279840025564113322874
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSD-PGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD-~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
+||+|| =-|+||-.+||+++..|-.+|.||-.+-.||==|.. ++.-| .++..+-...+.+...|-
T Consensus 1 i~~~sG--KGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~------L~~~~~~~~~e~~~~~~~------ 66 (217)
T cd02035 1 VIFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPN------LSDAFIVEDPEIAPNLYR------ 66 (217)
T ss_pred CEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHH------
T ss_conf 989978--996619999999999999689949999589876653234798------651358887666799998------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCC-------CCEEECCCHHHHHH--HHHHC--CCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 775468012589999998885777577-------40256460248989--99970--78898789997243122212306
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLG-------TTVQVIPHVTNEIK--EFITQ--GNEDADFVICEIGGTIGDIEVMP 151 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG-------~TVQvIPHvTdeIk--~~I~~--~~~~~Dv~ivEiGGTVGDIEs~p 151 (544)
.++....+...+.. .-....|-+ +|+- .++.+ ...++|++|+-..=| |+
T Consensus 67 -------------~~v~~~~~~~~~~~~~~~~~~~~~~~~pg~-~E~~~l~~~~~~~~~~~yD~IVvDtpPT-Gh----- 126 (217)
T cd02035 67 -------------EEVDATRRVERAWGGEGGLMLELAAALPGI-EELASLLAVFREFSEGLYDVIVFDTAPT-GH----- 126 (217)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCCCEEEECCCCC-HH-----
T ss_conf -------------750166653331100114567776159978-9999999999998548998899828985-56-----
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs 213 (544)
++|-+..+.=+.++.+-|+-||. |..-+. .-|+..+..|+..||..+-+|.--
T Consensus 127 ---tlrlL~~~~L~d~~~t~~~lVt~-Pe~~~~-----~et~r~~~~L~~~gi~v~~vVvN~ 179 (217)
T cd02035 127 ---TLRLLVRELLTDPERTSFRLVTL-PEKLPL-----YETERAITELALYGIPVDAVVVNR 179 (217)
T ss_pred ---HHHHHHHHHHCCCCCCEEEEEEC-CCCCHH-----HHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf ---99986788724888767999957-762179-----999999999997799889898958
No 107
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=96.32 E-value=0.012 Score=39.71 Aligned_cols=181 Identities=22% Similarity=0.248 Sum_probs=119.7
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 92399993750144444899999999999689828898544553348888886443507872798400255641133228
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG 80 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~ 80 (544)
|||-+|||| .=-++||-++|+-+..-|+.+|++|...| |.|-|. +..++ +=|.=.+.|+.+
T Consensus 1 m~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~----~~~~~-~~D~~~l~~~~~ 61 (223)
T COG0132 1 MMKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS----EETAE-NSDALVLQRLSG 61 (223)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------------CEEECC----CCCCC-CCHHHHHHHHCC
T ss_conf 973699982-79996499999999999996897059877-------------522178----77899-745999998519
Q ss_pred CCCCCCCCCCHHHHHH----HHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCC--CCCCCCHHHH
Q ss_conf 7477546801258999----999888577757740256460248989999707889878999724312--2212306899
Q gi|254780195|r 81 ISTAKADNITAGRIYK----NVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTI--GDIEVMPFVE 154 (544)
Q Consensus 81 ~~l~~~~niT~Gkiy~----~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTV--GDIEs~pFlE 154 (544)
+.++. -.++--.|+ -.+..+++ |+++. .++|..+.....+++|.++||=-|-+ ==-|...|..
T Consensus 62 ~~~~~--~~~~py~f~~P~sPhlAa~~e----g~~I~-----~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D 130 (223)
T COG0132 62 LDLSY--ELINPYRFKEPLSPHLAAELE----GRTID-----LEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFAD 130 (223)
T ss_pred CCCCC--CCCCCEECCCCCCCHHHHHHC----CCCCC-----HHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCHHH
T ss_conf 98663--354335307888847778764----89356-----99998788854054678999678733332578652999
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 999999874977685799997467542256620034789999999974998768999238758999999998
Q gi|254780195|r 155 AIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKIS 226 (544)
Q Consensus 155 AiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIa 226 (544)
=++|++. -+..|-= ..+++.+ -|=-|+..||+.||.---+|.-+..+-+...-+.+.
T Consensus 131 ~~~~~~l-------pvILV~~---~~LGtIN-----HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~~ 187 (223)
T COG0132 131 LAVQLQL-------PVILVVG---IKLGTIN-----HTLLTVEALRARGLPLAGWVANGINPELDHYAEINA 187 (223)
T ss_pred HHHHCCC-------CEEEEEC---CCCCHHH-----HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 9998099-------9999966---7757787-----999999999977998789997267885557888899
No 108
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.15 E-value=0.0053 Score=42.28 Aligned_cols=75 Identities=20% Similarity=0.445 Sum_probs=43.4
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCC--------CCCCCHH
Q ss_conf 79999520014813468888888888787367241677225656723445662169839973777--------8655016
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGF--------GKRGSEG 363 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGF--------G~RGieG 363 (544)
.|||+. .|+-++..-.++|+-. .++..++.. .+.|.++||+++|||= ..-|...
T Consensus 3 ~kIGVL----aLQG~~~eH~~~l~~l------g~~~~~Vr~--------~~dL~~idgLIiPGGESTti~~ll~~~~L~~ 64 (179)
T PRK13526 3 QKVGVL----AIQGGYQKHADMFKSL------GVEVKLVKF--------NNDFDSIDRLVIPGGESTTLLNLLNKHQIFD 64 (179)
T ss_pred EEEEEE----EECCCHHHHHHHHHHC------CCCEEEECC--------HHHHHCCCEEEECCCCHHHHHHHHHHCCCHH
T ss_conf 389999----9628879999999987------996899717--------8886007758975997789999976755499
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 8889988740476322355769999
Q gi|254780195|r 364 KIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 364 kI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
.|. +++++ .|.||+|-||-++
T Consensus 65 ~l~--~~~~~--~Pv~GTCAGlILL 85 (179)
T PRK13526 65 KLY--NFCSS--KPVFGTCAGSIIL 85 (179)
T ss_pred HHH--HHHHC--CCEEEECCEEEEE
T ss_conf 999--99858--9908861206898
No 109
>KOG3210 consensus
Probab=95.67 E-value=0.24 Score=30.33 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHH------HHHH
Q ss_conf 1481346888888888878736--7241677225656723445662169839973777865501688899------8874
Q gi|254780195|r 301 IHLKDAYRSLIEALRHSGVSNY--TKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAI------KFAR 372 (544)
Q Consensus 301 ~~l~DaY~Si~EAL~hA~~~~~--~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai------~yAR 372 (544)
..|+-|++--+.-++.+.+.++ .++++.-+.+ .+.|.++||++||||=. -.-|+|.-+ -|+-
T Consensus 17 LALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT--------~~D~aq~DaLIIPGGES--T~mslia~~tgL~d~L~~f 86 (226)
T KOG3210 17 LALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT--------KNDLAQCDALIIPGGES--TAMSLIAERTGLYDDLYAF 86 (226)
T ss_pred EEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC--------HHHHHHCCEEEECCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf 1021578998878877530586267888886157--------77786577778339850--2678887441017779998
Q ss_pred CC--CCCHHHHHHHHHHH
Q ss_conf 04--76322355769999
Q gi|254780195|r 373 EN--KIPFLGICFGMQMA 388 (544)
Q Consensus 373 en--~iP~LGIClGmQ~a 388 (544)
.+ ..|..|.|-||-+.
T Consensus 87 Vhn~~k~~WGTCAGmI~L 104 (226)
T KOG3210 87 VHNPSKVTWGTCAGMIYL 104 (226)
T ss_pred HCCCCCCEEEECHHHHHH
T ss_conf 448886403410225310
No 110
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.59 E-value=0.25 Score=30.12 Aligned_cols=187 Identities=18% Similarity=0.245 Sum_probs=95.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC--EEEECC--CCCCCCCCCCCHHHH
Q ss_conf 3999937501444448999999999996898288985445533488888864435--078727--984002556411332
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHG--EVFVTD--DGGEADLDFGHYERF 78 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHG--EVfVt~--DG~EtDlDlG~YERF 78 (544)
|+||+|| =-|+||-.+||+++.-|-.+|.||-.+-.||==|...----+..++ .|=+.+ +..|.|-+-- -++|
T Consensus 1 r~i~~~G--KGGVGKTT~AaalA~~lA~~G~kVLlvstDPahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~-~~~~ 77 (254)
T cd00550 1 RYIFFGG--KGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEA-LEEY 77 (254)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHH-HHHH
T ss_conf 9899968--985548999999999999689949999589864488984886678871103668845787288999-9999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHH--HHHC--CCCCCCEEEEECCC---CCCCCCCCH
Q ss_conf 2874775468012589999998885777577402564602489899--9970--78898789997243---122212306
Q gi|254780195|r 79 MGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKE--FITQ--GNEDADFVICEIGG---TIGDIEVMP 151 (544)
Q Consensus 79 l~~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~--~I~~--~~~~~Dv~ivEiGG---TVGDIEs~p 151 (544)
...-.......-...--..+++-+. ..|- ++|+-. ++.. ...++|++|+-..- |..=.+.--
T Consensus 78 ~~~v~~~~~~~~~~~~~~~~~~~~~----------~~PG-~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~ 146 (254)
T cd00550 78 RQEVLEPIEANLLLEMLKGILEEEL----------ESPG-IEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPT 146 (254)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH----------CCCC-HHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHH
T ss_conf 9999998863225566888899986----------3985-8999999999999760699889988998567998751569
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs 213 (544)
.++.++++ +- .++.+-|+-|| .|.--+. .-|+-.+..|+..||..|-+|.--
T Consensus 147 ~l~~~~~~---L~-d~~~t~~~lV~-~PE~~~v-----~Et~R~~~~L~~~~i~v~~vvvN~ 198 (254)
T cd00550 147 VLSWAREI---LS-DPERTSFRLVC-IPEKMSL-----YETERAIQELAKYGIDVDAVIVNQ 198 (254)
T ss_pred HHHHHHHH---CC-CCCCEEEEEEE-CCCCCHH-----HHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999985---37-95655899997-7872169-----999999999997799989799958
No 111
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=95.59 E-value=0.011 Score=39.98 Aligned_cols=293 Identities=22% Similarity=0.354 Sum_probs=167.5
Q ss_pred ECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC---------CCCHHHH
Q ss_conf 3750144444899999999999689828898544553348888886443507872798400255---------6411332
Q gi|254780195|r 8 TGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLD---------FGHYERF 78 (544)
Q Consensus 8 tGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlD---------lG~YERF 78 (544)
-+|.-|+-||-+.+|.+.+||..|||+|++-|= =-||=. -|||.||+|.-.- .===+||
T Consensus 3 V~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKs--------QNMSLN----Sfvt~~~~EiA~AQ~~QA~AAGieP~~~m 70 (502)
T TIGR00313 3 VVGTSSSAGKSLLTAALCRILARRGYRVAPFKS--------QNMSLN----SFVTAEGGEIAIAQALQALAAGIEPSVHM 70 (502)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHH----HHHCCCCCEEEHHHHHHHHHCCCCCCCCC
T ss_conf 420115402899999999998527881278501--------101013----33113787551376899986387886234
Q ss_pred CCCCCCCCCCCCH-----HHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC----C
Q ss_conf 2874775468012-----589999998885777577402564602489899997078898789997243122212----3
Q gi|254780195|r 79 MGISTAKADNITA-----GRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIE----V 149 (544)
Q Consensus 79 l~~~l~~~~niT~-----Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIE----s 149 (544)
-=+=|..+-|+|| |+=|.++=.+|=++.|.-. .-..|++-.+.-++++|++|+|=-|.--.|- -
T Consensus 71 NPvLLKPkgdf~SQviv~G~a~g~~~~~~Y~~~~~d~-------~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rD 143 (502)
T TIGR00313 71 NPVLLKPKGDFTSQVIVHGRAVGDMNAQEYYKNKVDF-------LLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERD 143 (502)
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 8710167888466789841124667615677799999-------999999999875202888998268871000533157
Q ss_pred CHHHHHHHHHH------HHCCCCCCCEEEEEE--EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE--EECCCCCCH
Q ss_conf 06899999999------874977685799997--46754225662003478999999997499876899--923875899
Q gi|254780195|r 150 MPFVEAIRQFG------NEFSHRGSKALYIHL--TLMPYIRSSGELKTKPTQHSVKELQALGVHPDILL--IRADRDIPE 219 (544)
Q Consensus 150 ~pFlEAiRQl~------~e~g~~~~n~~fiHv--tlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiiv--cRse~~l~~ 219 (544)
+|=++-.+-.+ .+..++ . .|-|+ ||---. | ..||. ||- |++ .|-...+-+
T Consensus 144 LaN~~iA~~~~A~~iLvADIDRG-G--VFAsi~GTl~LL~----~-~~r~l---iKG---------~vINkfRG~~~vL~ 203 (502)
T TIGR00313 144 LANMRIAELADADVILVADIDRG-G--VFASIYGTLKLLP----E-EERKL---IKG---------IVINKFRGNVDVLE 203 (502)
T ss_pred CHHHHHHHHCCCCEEEEEECCCC-C--CHHHHHHHHHHCC----C-CCCCE---ECE---------EEECCCCCCHHHHH
T ss_conf 22478986439767999750777-4--3243374666188----3-45750---030---------68835468724434
Q ss_pred HHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEH-
Q ss_conf 9999998641988677240389862026689887649488999983878888620478999998741843437999952-
Q gi|254780195|r 220 MERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVG- 298 (544)
Q Consensus 220 ~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVG- 298 (544)
+=.+||=-.|.||.=-|++= .+-|.|+.-...++.+|+..- .++.|+|++|=
T Consensus 204 ~GI~~lEelTGiPVLGv~PY----------------------~~~l~lp~EDS~~l~~~~~~G-----~~~dirv~v~RL 256 (502)
T TIGR00313 204 SGIEKLEELTGIPVLGVLPY----------------------DENLKLPEEDSLDLEERKARG-----SKKDIRVGVVRL 256 (502)
T ss_pred HHHHHHHHHCCCCEEEEEEC----------------------CCCCCCCHHHHHHHHHHCCCC-----CCCCEEEEEEEC
T ss_conf 45689988548423446501----------------------257767513105688615789-----975048999853
Q ss_pred -HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHH----------H
Q ss_conf -00148134688888888887873672416772256567234456621698399737778655016888----------9
Q gi|254780195|r 299 -KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIA----------A 367 (544)
Q Consensus 299 -KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~----------A 367 (544)
|=..+.| +|-|+ ....|-|+||+.++ .|.++|.|++| |+|-+=--+. .
T Consensus 257 priSNFTD-----~ePL~-----~~~~V~v~fl~l~~--------~L~~~d~vIiP---Gsk~ti~dl~~L~~~~~~~~i 315 (502)
T TIGR00313 257 PRISNFTD-----FEPLR-----YEADVAVKFLELED--------SLDGLDAVIIP---GSKDTIADLKALKESGFAEEI 315 (502)
T ss_pred CCCCCCCC-----CCHHH-----CCCCCEEEEECCCC--------CCCCCEEEEEC---CCCCHHHHHHHHHHCCCHHHH
T ss_conf 76356677-----52211-----14872899832688--------77884489967---996578999999746866799
Q ss_pred HHHHHCCCCC-HHHHHHHHHHHH
Q ss_conf 9887404763-223557699999
Q gi|254780195|r 368 IKFARENKIP-FLGICFGMQMAV 389 (544)
Q Consensus 368 i~yARen~iP-~LGIClGmQ~av 389 (544)
.+||| .+| .+|||.|+|++.
T Consensus 316 ~~~~~--~ig~V~GICGGYQ~LG 336 (502)
T TIGR00313 316 LDLAK--EIGIVIGICGGYQMLG 336 (502)
T ss_pred HHHHH--CCCEEEEECCCHHHHH
T ss_conf 99960--6988998347602100
No 112
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.48 E-value=0.1 Score=32.94 Aligned_cols=47 Identities=28% Similarity=0.300 Sum_probs=41.9
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 2399993750144444899999999999689828898544553348888
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGT 50 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~Gt 50 (544)
|+-|-|+| =-|+||-.+|..++.-|...|.||-.+-+||+.|--++.
T Consensus 1 ~r~Iai~G--KGGVGKTTtavNLA~aLa~~GkkVlliDaDpq~~~t~~l 47 (270)
T cd02040 1 MRQIAIYG--KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLL 47 (270)
T ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 95899979--985778999999999999879949998657998513465
No 113
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=95.45 E-value=0.027 Score=37.12 Aligned_cols=193 Identities=18% Similarity=0.134 Sum_probs=99.9
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 92399993750144444899999999999689828898544553348888886443507872798400255641133228
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG 80 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~ 80 (544)
|||-+|||| .=+++||-++++.+.+.|+++|++|...| | +-+| +..++||.+ +-|--.+.+.-+
T Consensus 1 Mmk~~FITG-TDTdVGKT~vsaaL~~~l~~~G~~v~~~K--P---VasG---------~~~~~~g~~-~~Da~~l~~~~~ 64 (231)
T PRK12374 1 MLKRFFITG-TDTSVGKTVVSRALLQALASQGKSVAGYK--P---VAKG---------SKETPEGLR-NKDALVLQSVST 64 (231)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE--E---EECC---------CCCCCCCCC-HHHHHHHHHHHC
T ss_conf 996479987-89995399999999999997899488885--6---8839---------966899872-478999998737
Q ss_pred CCCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--CCCHHHHHH
Q ss_conf 747754--6801258999999888577757740256460248989999707889878999724312221--230689999
Q gi|254780195|r 81 ISTAKA--DNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDI--EVMPFVEAI 156 (544)
Q Consensus 81 ~~l~~~--~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDI--Es~pFlEAi 156 (544)
..++.. |-+. +..+-.-..-+..+. -+.|++.+.+..+.+|+++||=-|-+--. +...+..-+
T Consensus 65 ~~~~~~~vnP~~--------~~~~~aa~~~~~~id-----~~~i~~~~~~l~~~~d~vlVEGAGG~~vPl~~~~~~~Dl~ 131 (231)
T PRK12374 65 IELPYEAVNPIA--------LSEEESSVAHSCPIN-----YTLISNGLANLTDKVDHVVVEGTGGWRSLMNDLRPLSEWV 131 (231)
T ss_pred CCCCHHHCCCCC--------CCCCCCCHHHCCCCC-----HHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCHHHHHH
T ss_conf 899988719766--------886657744548578-----9999999999885579799977986213047651499999
Q ss_pred HHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-ECCC--CCCHHHHHHHHHHCCCCH
Q ss_conf 9999874977685799997467542256620034789999999974998768999-2387--589999999986419886
Q gi|254780195|r 157 RQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLI-RADR--DIPEMERRKISLFCNVPM 233 (544)
Q Consensus 157 RQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivc-Rse~--~l~~~~k~KIalfc~V~~ 233 (544)
+++. + .++.|-= .++++.+. |=-++..||+-||.--=+|. |-+- +.-++..+-|.-.+++|.
T Consensus 132 ~~l~--l-----PVILV~~---~~LG~INH-----tLLT~eal~~~gl~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P~ 196 (231)
T PRK12374 132 VQEQ--L-----PVLMVVG---IQEGCINH-----ALLTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL 196 (231)
T ss_pred HHCC--C-----CEEEEEC---CCCCHHHH-----HHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCE
T ss_conf 9839--9-----9999988---98684889-----999999999789957999998367970467889999998559997
Q ss_pred HHEE
Q ss_conf 7724
Q gi|254780195|r 234 SAVI 237 (544)
Q Consensus 234 ~~Vi 237 (544)
=.+|
T Consensus 197 LG~i 200 (231)
T PRK12374 197 IGEL 200 (231)
T ss_pred EEEC
T ss_conf 8868
No 114
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=95.28 E-value=0.27 Score=29.91 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHH--H--HHHHH---HHH--------
Q ss_conf 88888888887873672416772256567234456621698399737778655016--8--88998---874--------
Q gi|254780195|r 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEG--K--IAAIK---FAR-------- 372 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieG--k--I~Ai~---yAR-------- 372 (544)
...-.|+..||+... =|.-++|-.. ...|.++.|++.||||.+--+-| | ..++. -+|
T Consensus 1053 ~EmAaAF~~AGF~~~------DVhmsDL~~g--~~~L~~f~glva~GGFSyGDvlGsgkGwA~sil~N~~~r~~f~~Ff~ 1124 (1294)
T PRK05297 1053 VEMAAAFDRAGFDAI------DVHMSDLLAG--RVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFAAFFA 1124 (1294)
T ss_pred HHHHHHHHHCCCCEE------EEEHHHCCCC--CCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 999999998699348------8652310036--11787791899878768767775678999999729999999999973
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0476322355769999
Q gi|254780195|r 373 ENKIPFLGICFGMQMA 388 (544)
Q Consensus 373 en~iP~LGIClGmQ~a 388 (544)
..+-=-||||=|+|++
T Consensus 1125 r~DtfsLGICNGcQ~L 1140 (1294)
T PRK05297 1125 RPDTFALGVCNGCQMM 1140 (1294)
T ss_pred CCCCEEEEEEHHHHHH
T ss_conf 9994599953889999
No 115
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.18 E-value=0.013 Score=39.34 Aligned_cols=281 Identities=22% Similarity=0.309 Sum_probs=139.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 39999375014444489999999999968982889854455334888888644350787279840025564113322874
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
|.|.| -|..|..||-..++-+.++|..+|++|.+.|- -.||= --|||.||+|.
T Consensus 2 ~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI-------------- 54 (486)
T COG1492 2 KAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI-------------- 54 (486)
T ss_pred CCCEE-EECCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--------HHCCC----CCEECCCCCEE--------------
T ss_conf 85378-72147765467524534888735775478706--------54346----60787799687--------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCC---------CCEEECCC-------------------HHHHHHHHHHCCCCCCC
Q ss_conf 775468012589999998885777577---------40256460-------------------24898999970788987
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLG---------TTVQVIPH-------------------VTNEIKEFITQGNEDAD 134 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG---------~TVQvIPH-------------------vTdeIk~~I~~~~~~~D 134 (544)
-.+|.+|..-...+.--+.. .+-|||=| .-.++++-+.+.++..|
T Consensus 55 -------graQ~~QA~Aa~i~p~v~mNPvLLKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d 127 (486)
T COG1492 55 -------GRAQALQALAAGIEPSVHMNPVLLKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYD 127 (486)
T ss_pred -------EHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -------5506678987399874342877870358884479994634466571788999889999999999987541055
Q ss_pred EEEEECCCCCC-------CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEE----EECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89997243122-------2123068999999998749776857999974675----422566200347899999999749
Q gi|254780195|r 135 FVICEIGGTIG-------DIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMP----YIRSSGELKTKPTQHSVKELQALG 203 (544)
Q Consensus 135 v~ivEiGGTVG-------DIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP----~l~~~gE~KTKPTQhSVk~Lrs~G 203 (544)
++++|--|+-+ ||-+|-|-|..+ +--|-|.=+- +-...|++.-=| -+.|.+ =.|
T Consensus 128 ~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d------------apvILV~DIdRGGvfAsl~GT~~lL~--~~~r~~-VkG 192 (486)
T COG1492 128 VVVIEGAGSPAEINLRDRDIANMGVAEIAD------------APVILVGDIDRGGVFASLYGTLALLP--ESDRAL-VKG 192 (486)
T ss_pred EEEEECCCCHHHCCCCCCCCCCEEEEHHCC------------CCEEEEEEECCCCEEEEEEEHHEECC--HHHHCC-EEE
T ss_conf 899963798232276636611002202338------------98899995115645417302122368--767600-147
Q ss_pred CCCCEEE--EECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 9876899--92387589999999986419886772403898620266898876494889999838788886204789999
Q gi|254780195|r 204 VHPDILL--IRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTF 281 (544)
Q Consensus 204 IqPDiiv--cRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~ 281 (544)
++| -|-+..|-+.-.+.|-..+.++.=.|+.- ++. .+.+|++=
T Consensus 193 ----~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~-------------------------~~~------~~~p~EDS 237 (486)
T COG1492 193 ----FIINKFRGDESLLDPGLKWLEELTGVPVLGVLPY-------------------------LKD------ALRPAEDS 237 (486)
T ss_pred ----EEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCC-------------------------CCC------CCCCCCCC
T ss_conf ----9996317987887459999998619746756525-------------------------554------55764202
Q ss_pred HH----HHCCCCCCEEEEEEH-HHC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC
Q ss_conf 98----741843437999952-001-481346888888888878736724167722565672344566216983997377
Q gi|254780195|r 282 CD----RTLSLKNEVKVAIVG-KYI-HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG 355 (544)
Q Consensus 282 ~~----~~~~~~~~V~IaiVG-KY~-~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG 355 (544)
+. +....+..++||++. .+. .+.|-.. ....-.+.+.|+... +.|.+.|-|++||-
T Consensus 238 ~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~dp----------L~~~~~v~v~~v~~~--------~~l~~~dlvIlPGs 299 (486)
T COG1492 238 LSLEQPKAGGNKRAIRIAVIRLPRISNFTDFDP----------LRAEPDVRVRFVKPG--------SDLRDADLVILPGS 299 (486)
T ss_pred CCCHHHCCCCCCCCEEEEEECCCCCCCCCCCHH----------HHCCCCEEEEEECCC--------CCCCCCCEEEECCC
T ss_conf 270001025897754999965787556445214----------652798079996167--------77899888994798
Q ss_pred CC---------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 78---------6550168889988740476322355769999
Q gi|254780195|r 356 FG---------KRGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 356 FG---------~RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
-- .+|++- .-.+|+|. +.|.+|||.|||+.
T Consensus 300 k~t~~DL~~lr~~g~d~--~i~~~~~~-~~~viGICGG~QmL 338 (486)
T COG1492 300 KNTIADLKILREGGMDE--KILEYARK-GGDVIGICGGYQML 338 (486)
T ss_pred CCCHHHHHHHHHCCHHH--HHHHHHHC-CCCEEEECCHHHHH
T ss_conf 56088999999769799--99999747-99799986357764
No 116
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.86 E-value=0.096 Score=33.18 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=29.8
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 99937501444448999999999996898288985
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|+++|.- |.||-.+|+.++..|..+|++|..++
T Consensus 2 i~~~~~k--GvGKTT~a~~La~~la~~g~~Vl~vD 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8985899--77689999999999998899699986
No 117
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=94.56 E-value=0.48 Score=28.13 Aligned_cols=175 Identities=16% Similarity=0.199 Sum_probs=87.3
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC-EEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 999937501444448999999999996898288985445533488888864435-0787279840025564113322874
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHG-EVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHG-EVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
+|++.|-==-|.||-.+|..++.-|-..|+||..+-+||= .+|++-|-.. ..+.. ..++|+ .
T Consensus 1 hIIaVaNqKGGvGKTTtavnLA~aLA~~G~rVllIDlDpq----q~slt~~l~nr~~~~~----~~~~~l---------~ 63 (261)
T pfam09140 1 HVIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLDLR----QRTLTRYIENRAATAE----RTGLDL---------P 63 (261)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC----CCCHHHHHHHHHHHHH----HCCCCC---------C
T ss_conf 9799971789872999999999999988997899979999----9851234430355655----138653---------4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 77546801258999999888577757740256460248989999707889878999724312221230689999999987
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNE 162 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e 162 (544)
.....++..... .+...|... ....++.+.....++|+++|-..|..|-.--....-|=.-+
T Consensus 64 ~P~~~~l~~~~~--~~~~~~~~~-------------~~~L~~al~~l~~~yDfIlIDcPPsl~~Lt~nAl~aAD~vI--- 125 (261)
T pfam09140 64 VPKHLCLPDDVS--EVFDGESAD-------------DARLEEAVADLEQDADFIVIDTPGSDSPLSRLAHSRADTLV--- 125 (261)
T ss_pred CCCCCCCCHHHH--HHHHHHHHH-------------HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCEEE---
T ss_conf 665344550677--761345578-------------99999999998757999999699857399999999839876---
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH-----HHHHHH--CCCCCCEEEEECCCC
Q ss_conf 497768579999746754225662003478999-----999997--499876899923875
Q gi|254780195|r 163 FSHRGSKALYIHLTLMPYIRSSGELKTKPTQHS-----VKELQA--LGVHPDILLIRADRD 216 (544)
Q Consensus 163 ~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhS-----Vk~Lrs--~GIqPDiivcRse~~ 216 (544)
. +=|+-|+-+-.+.-+.....-=++|+.-| .|.+|+ -|-.-|.+|.|.--.
T Consensus 126 i---Plq~sf~dld~L~~vd~~~~~i~~~s~y~e~vw~~r~~ra~~~~~~idwivlrnRl~ 183 (261)
T pfam09140 126 T---PLNDSFVDFDLLGQVDPETFKVTRPSFYAEMVWEARKKRAQADRAPIDWIVLRNRLS 183 (261)
T ss_pred E---CCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
T ss_conf 3---244015514335213703432136217899999999987436898864799805621
No 118
>CHL00175 minD septum-site determining protein; Validated
Probab=94.55 E-value=0.34 Score=29.18 Aligned_cols=46 Identities=35% Similarity=0.474 Sum_probs=39.1
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC
Q ss_conf 92399993750144444899999999999689828898544553-348
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYL-NSD 47 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYl-NvD 47 (544)
|+|-|-|+.| =-|+||-.+|+.+|.-|..+|+||-.+-+|+++ |+|
T Consensus 12 m~kiIaV~s~-KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~ 58 (279)
T CHL00175 12 MTRIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLD 58 (279)
T ss_pred CCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 8869999748-9984489999999999997899889995789999875
No 119
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.51 E-value=0.089 Score=33.43 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=51.2
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC-----C----HHHHHCCCCEEEECCCCCCCCCH
Q ss_conf 79999520014813468888888888787367241677225656723-----4----45662169839973777865501
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKE-----D----PVKHFYGVHGILVPGGFGKRGSE 362 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~-----~----~~~~L~~~dGIlVPGGFG~RGie 362 (544)
.||||+||+-. +.+ ..+.+.|..--...++.+-+.=--++.+..+ . ....-.++|=+++-||=|+
T Consensus 1 MKIaIigk~~~-~~~-~~~~~~Li~~L~~~g~~v~le~~~a~~l~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT---- 74 (290)
T PRK01911 1 MKIAIFGQTYQ-ASK-SPHIKRLFELLEEHGAEIYIEEEFLNFLTQDLKFEPKYKGFFDGNNFDFDMVISIGGDGT---- 74 (290)
T ss_pred CEEEEECCCCC-HHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHH----
T ss_conf 99999888898-479-999999999999889989997689787765125664312321135777779999787689----
Q ss_pred HHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 6888998874047632235576
Q gi|254780195|r 363 GKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 363 GkI~Ai~yARen~iP~LGIClG 384 (544)
.+.|++.+...++|+|||=+|
T Consensus 75 -~L~a~~~~~~~~iPilGiN~G 95 (290)
T PRK01911 75 -FLRAAARVGNSGIPILGINTG 95 (290)
T ss_pred -HHHHHHHHHHCCCCEEEEECC
T ss_conf -999999861259968999448
No 120
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.42 E-value=0.14 Score=32.07 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=51.1
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-----CCHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf 7999952001481346888888888878736724167722565672-----34456621698399737778655016888
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEK-----EDPVKHFYGVHGILVPGGFGKRGSEGKIA 366 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~-----~~~~~~L~~~dGIlVPGGFG~RGieGkI~ 366 (544)
-+||||+|. .-++| ..+...+..--...+..+-+..--++.+.. .+....-..+|-+++-||=|+ .+.
T Consensus 5 k~vgIv~k~-~~~~a-~~~~~~l~~~L~~~gi~v~ld~~~a~~~~~~~~~~~~~~~~~~~~Dlii~lGGDGT-----~L~ 77 (296)
T PRK01231 5 RNIGLIGRL-GSSQV-VETLRRLKRFLLDRHLHVILEEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGS-----LLG 77 (296)
T ss_pred CEEEEEEEC-CCHHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHCCCCEEEEEEECCCCH-----HHH
T ss_conf 899999848-98799-99999999999878899999324776658788662453341653049999578728-----999
Q ss_pred HHHHHHCCCCCHHHHHHH
Q ss_conf 998874047632235576
Q gi|254780195|r 367 AIKFARENKIPFLGICFG 384 (544)
Q Consensus 367 Ai~yARen~iP~LGIClG 384 (544)
|++.+...++|+|||=+|
T Consensus 78 ~~~~~~~~~~PilGiN~G 95 (296)
T PRK01231 78 AARALARHNVPVLGINRG 95 (296)
T ss_pred HHHHHCCCCCCEEEEECC
T ss_conf 999960369978988558
No 121
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=94.33 E-value=0.04 Score=35.93 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHH--HHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 8758999999998641988677240389862026--6898876494889999838788
Q gi|254780195|r 214 DRDIPEMERRKISLFCNVPMSAVIPALDVDDIYK--VPLSYHREGIDSVVLNAFGIEN 269 (544)
Q Consensus 214 e~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~--VPl~l~~q~l~~~I~~~L~l~~ 269 (544)
.+++.-+..+|+ .+-.++...++|-.=-.+||- |--.|.+..+-+-++++|+...
T Consensus 149 tk~lt~S~i~kl-NYk~~~~~~IlSG~~kgkV~GTmVHn~LDn~~v~~N~l~~l~~~e 205 (482)
T PRK06278 149 TKKLTYSKIQKL-NYKMVGKQNILSGVFKGNVYGTMVHNLLDNNFVVNNILKYLDITE 205 (482)
T ss_pred CCEEEHHHHHHH-CCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCCH
T ss_conf 752246554340-234367640552001684614545554242889999998728877
No 122
>PRK04759 consensus
Probab=94.12 E-value=0.16 Score=31.51 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=49.9
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC---CCCCC------CCHHHHHCCCCEEEECCCCCCCCCH
Q ss_conf 79999520014813468888888888787367241677225---65672------3445662169839973777865501
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDA---ETLEK------EDPVKHFYGVHGILVPGGFGKRGSE 362 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIds---e~le~------~~~~~~L~~~dGIlVPGGFG~RGie 362 (544)
-+||||+|. .-+++-....+-.. --...+++ .|+|. +.+.. .+..+.-+.+|-+++-||=|+
T Consensus 6 ~~I~Iv~k~-~~~~~~~~~~~l~~-~L~~~g~~---v~vd~~~~~~l~~~~~~~~~~~~~l~~~~Dlvi~lGGDGT---- 76 (294)
T PRK04759 6 NVIAIIGKP-RDQQAIQTHKELYH-WLTSLGYT---VFIDDRLAAILTDVPQEHFASLVELGKKADLAIVVGGDGN---- 76 (294)
T ss_pred CEEEEEEEC-CCHHHHHHHHHHHH-HHHHCCCE---EEECHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEECCCHH----
T ss_conf 799999417-99799999999999-99868999---9991688655334772223775563766568999847858----
Q ss_pred HHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 6888998874047632235576
Q gi|254780195|r 363 GKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 363 GkI~Ai~yARen~iP~LGIClG 384 (544)
.+.|++++...++|.|||=+|
T Consensus 77 -lL~aar~~~~~~~PilgiN~G 97 (294)
T PRK04759 77 -MLGAARVLSRFDISVIGVNRG 97 (294)
T ss_pred -HHHHHHHHCCCCCCEEEEECC
T ss_conf -999999860169968988458
No 123
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.11 E-value=0.17 Score=31.45 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=50.7
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC---CCCC-----CCHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf 799995200148134688888888887873672416772256---5672-----34456621698399737778655016
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAE---TLEK-----EDPVKHFYGVHGILVPGGFGKRGSEG 363 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse---~le~-----~~~~~~L~~~dGIlVPGGFG~RGieG 363 (544)
-+||||+|+ .-+.+-. +.+.|. .+-....++ .|+|.+ .+.. .+..+.-+++|-+++-||=|+
T Consensus 6 k~IgIi~k~-~~~~a~~-~~~~l~--~~L~~~g~~-v~ld~~~a~~l~~~~~~~~~~~~~~~~~Dlvi~lGGDGT----- 75 (292)
T PRK03378 6 KCIGIVGHP-RHPTALT-THEMLY--RWLCTKGYE-VIVEQQIAHELQLKNVKTGTLAEIGQQADLAVVVGGDGN----- 75 (292)
T ss_pred CEEEEEEEC-CCHHHHH-HHHHHH--HHHHHCCCE-EEECHHHHHHCCCCCCCCCCHHHHCCCCCEEEEECCCHH-----
T ss_conf 899999527-9858999-999999--999978998-998347876529986554786685305689999777889-----
Q ss_pred HHHHHHHHHCCCCCHHHHHHH
Q ss_conf 888998874047632235576
Q gi|254780195|r 364 KIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 364 kI~Ai~yARen~iP~LGIClG 384 (544)
.+.|++.+...++|.|||=+|
T Consensus 76 ~L~aar~~~~~~~PilGIN~G 96 (292)
T PRK03378 76 MLGAARTLARYDIKVIGINRG 96 (292)
T ss_pred HHHHHHHHCCCCCCEEEEECC
T ss_conf 999999854369968988379
No 124
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.90 E-value=0.14 Score=32.07 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 9239999375014444489999999999968982889854455334888888
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMS 52 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~Gtms 52 (544)
|++++|+|| -.|+||-.+||+++.-|-..|.+|-.+-.||=-|...-...
T Consensus 1 ~~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 1 MTRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCC
T ss_conf 937999936--88545899999999999975990799984898744765423
No 125
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=93.77 E-value=0.69 Score=27.00 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 44448999999999996898288985445533
Q gi|254780195|r 14 SLGKGVAAASLGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 14 glGKGi~aaSig~lLk~~g~~v~~~K~DPYlN 45 (544)
|+||-.+|..++.-|-.+|+||-.+-+||==|
T Consensus 115 GVGKTTtav~LA~~LA~~G~RVLvIDLDPQan 146 (387)
T TIGR03453 115 GSGKTTTSAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 65699999999999997799889995370167
No 126
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=93.74 E-value=0.63 Score=27.28 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 444489999999999968982889854455334
Q gi|254780195|r 14 SLGKGVAAASLGALLQAHKYKVRVRKLDPYLNS 46 (544)
Q Consensus 14 glGKGi~aaSig~lLk~~g~~v~~~K~DPYlNv 46 (544)
|.||-.+|..++.-|-.+|+||-.|-+||==|.
T Consensus 132 GVGKTTtav~LA~~LA~~G~RVLlIDLDPQgnl 164 (405)
T PRK13869 132 GSGKTTTSAHLAQYLALQGYRVLAVDLDPQASL 164 (405)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 765999999999999977998899964561788
No 127
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.60 E-value=0.21 Score=30.79 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=51.7
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC----------CCHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 7999952001481346888888888878736724167722565672----------344566216983997377786550
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEK----------EDPVKHFYGVHGILVPGGFGKRGS 361 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~----------~~~~~~L~~~dGIlVPGGFG~RGi 361 (544)
-+||||+|+- -+++-....+-..+. ...++++-++...+.+... -+..+.-+.+|=+++-||=|+
T Consensus 6 k~Igiv~k~~-~~~~~~~~~~l~~~L-~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlii~lGGDGT--- 80 (296)
T PRK04539 6 HNIGIVTRPN-TPDIQDTAHTLITFL-KQHGFTVYLDEVGVKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGT--- 80 (296)
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHHH-HHCCCEEEEECCHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCHH---
T ss_conf 7899997089-879999999999999-97879999965411203546433456554686781646779999787089---
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 16888998874047632235576
Q gi|254780195|r 362 EGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 362 eGkI~Ai~yARen~iP~LGIClG 384 (544)
.+.|++.+...++|+|||=+|
T Consensus 81 --lL~a~r~~~~~~~PilGiN~G 101 (296)
T PRK04539 81 --FLSVAREIAPRAVPIIGINQG 101 (296)
T ss_pred --HHHHHHHHHHCCCCEEEEECC
T ss_conf --999999860059978998447
No 128
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.57 E-value=0.18 Score=31.22 Aligned_cols=82 Identities=22% Similarity=0.131 Sum_probs=52.1
Q ss_pred EEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC---CC--------------CCCHHHHHCCCCEEEECCC
Q ss_conf 999952001481346888888888878736724167722565---67--------------2344566216983997377
Q gi|254780195|r 293 KVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAET---LE--------------KEDPVKHFYGVHGILVPGG 355 (544)
Q Consensus 293 ~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~---le--------------~~~~~~~L~~~dGIlVPGG 355 (544)
|||||++- + ++.-+.+.+-|..--.+.+..+ |++++. +. .-.......++|=+++-||
T Consensus 3 kiGIi~~~-~-~~~a~~~a~~l~~~L~~~gi~v---~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~IvlGG 77 (305)
T PRK02649 3 KAGIIYND-G-KPLAVRTAEELQDKLEAAGWEV---VRASSSGGMLGYANPDQPVCHTGIDALVPEGFDSSMKFAIVLGG 77 (305)
T ss_pred EEEEEECC-C-CHHHHHHHHHHHHHHHHCCCEE---EEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 89999738-9-9899999999999999889999---99744123228787553211244111263335777339999837
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 78655016888998874047632235576
Q gi|254780195|r 356 FGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 356 FG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
=|+ .+.|++.+...++|.|||=+|
T Consensus 78 DGT-----~L~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 78 DGT-----VLSAARQTAPCGIPLLTINTG 101 (305)
T ss_pred CHH-----HHHHHHHHCCCCCCEEEEECC
T ss_conf 699-----999999853369978989448
No 129
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.44 E-value=0.24 Score=30.29 Aligned_cols=87 Identities=24% Similarity=0.296 Sum_probs=52.7
Q ss_pred CEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC------------CHHHHHCCCCEEEECCCCCC
Q ss_conf 379999520014813468888888888787367241677225656723------------44566216983997377786
Q gi|254780195|r 291 EVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKE------------DPVKHFYGVHGILVPGGFGK 358 (544)
Q Consensus 291 ~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~------------~~~~~L~~~dGIlVPGGFG~ 358 (544)
.=+|+||.|. .-++|-....+...+- .+.+..+.+..-++...... .......++|-+++-||=|+
T Consensus 4 ~R~V~IV~k~-~~~~a~~~a~~l~~~L-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT 81 (303)
T PRK03372 4 ERTVLLVAHT-GRDEATESARRVVKQL-GDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLVLGGDGT 81 (303)
T ss_pred CCEEEEEECC-CCHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHH
T ss_conf 8889999708-9989999999999999-9788989997040100244455556542234532233578558999778789
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 55016888998874047632235576
Q gi|254780195|r 359 RGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 359 RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
.+.|+++++..++|.|||-+|
T Consensus 82 -----~L~aar~~~~~~iPilGiN~G 102 (303)
T PRK03372 82 -----FLRAAELARNADVPVLGVNLG 102 (303)
T ss_pred -----HHHHHHHHCCCCCCEEEEECC
T ss_conf -----999999844479988987259
No 130
>PRK10818 cell division inhibitor MinD; Provisional
Probab=93.14 E-value=0.59 Score=27.49 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=39.1
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 923999937501444448999999999996898288985445533
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlN 45 (544)
|.|.|-|+.| =-|+||-.+|..++.-|-.+|.||..+-+|+++.
T Consensus 1 M~rvIaV~s~-KGGVGKTT~avNLA~aLA~~G~kVlliD~D~~~~ 44 (270)
T PRK10818 1 MARIIVVTSG-KGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR 44 (270)
T ss_pred CCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9749999789-9984189999999999997799689996899998
No 131
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.01 E-value=0.27 Score=29.95 Aligned_cols=86 Identities=22% Similarity=0.188 Sum_probs=49.4
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC-----CCCCHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf 79999520014813468888888888787367241677225656-----7234456621698399737778655016888
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL-----EKEDPVKHFYGVHGILVPGGFGKRGSEGKIA 366 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l-----e~~~~~~~L~~~dGIlVPGGFG~RGieGkI~ 366 (544)
-+||||+|+- -+++- ...+.|..-=...++++-+.--.+..+ ..-+..+.-+++|-+++-||=|+ .+.
T Consensus 6 k~Vgiv~k~~-~~~~~-~~~~~l~~~L~~~g~~v~~e~~~a~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT-----lL~ 78 (291)
T PRK02155 6 RTVALVGRYQ-TPGIA-EPLEALAACIAKRGFEVVFEADTARNTGLTGYPALTPAEIGARADVAVVLGGDGT-----MLG 78 (291)
T ss_pred CEEEEEECCC-CHHHH-HHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHCCCCCEEEEECCCHH-----HHH
T ss_conf 8999991489-86899-9999999999978899999555777639988774797994637678999767889-----999
Q ss_pred HHHHHHCCCCCHHHHHHH
Q ss_conf 998874047632235576
Q gi|254780195|r 367 AIKFARENKIPFLGICFG 384 (544)
Q Consensus 367 Ai~yARen~iP~LGIClG 384 (544)
|++.+...++|.|||=+|
T Consensus 79 ~a~~~~~~~~PilGiN~G 96 (291)
T PRK02155 79 IGRQLAPYGTPLIGINHG 96 (291)
T ss_pred HHHHHHCCCCCEEEEECC
T ss_conf 999871159968998547
No 132
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.83 E-value=0.95 Score=26.00 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=32.0
Q ss_pred EECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 9375014444489999999999968982889854455334
Q gi|254780195|r 7 ITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNS 46 (544)
Q Consensus 7 VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNv 46 (544)
+|| --|.||--....++..|..+|++|..+-+||+=-.
T Consensus 4 itG--~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~ 41 (148)
T cd03114 4 ITG--VPGAGKSTLIDALITALRARGKRVAVLAIDPSSPF 41 (148)
T ss_pred ECC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 258--99787899999999999978983799996888786
No 133
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=92.70 E-value=0.22 Score=30.61 Aligned_cols=150 Identities=23% Similarity=0.345 Sum_probs=85.6
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 92399993750144444899999999999689828898544553348888886443507872798400255641133228
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG 80 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~ 80 (544)
|.+-|+||.|- -|+||-.++|+||.-|-.+|.||..+-+|==| |=||
T Consensus 1 M~~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~DiGL--------------------------------RNLD 47 (272)
T COG2894 1 MARIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFDIGL--------------------------------RNLD 47 (272)
T ss_pred CCEEEEEECCC-CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCC--------------------------------HHHH
T ss_conf 96499994488-87674310677899999739859999667672--------------------------------0446
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 74775468012589999998885777577402564602489899997078898789997243122212306899999999
Q gi|254780195|r 81 ISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 81 ~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (544)
+ |+--|||=-| ...|-|..+-. .-.|+=
T Consensus 48 l----------------imGlE~RiVY---------d~vdVi~g~~~------------------------l~QALI--- 75 (272)
T COG2894 48 L----------------IMGLENRIVY---------DLVDVIEGEAT------------------------LNQALI--- 75 (272)
T ss_pred H----------------HHCCCCEEEE---------EEHHHHCCCCC------------------------HHHHHH---
T ss_conf 6----------------6434201565---------40134447663------------------------656764---
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCCCC--CHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEE
Q ss_conf 87497768579999746754225662--0034789999999974998768999238758999999998641988677240
Q gi|254780195|r 161 NEFSHRGSKALYIHLTLMPYIRSSGE--LKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIP 238 (544)
Q Consensus 161 ~e~g~~~~n~~fiHvtlvP~l~~~gE--~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~ 238 (544)
.+ ++-+| +| ++|--.+..- +.---.+.-|.+|+. -.-|.|+|-|.-.|....+.-++.- +..-|+.
T Consensus 76 kD--Kr~~n-L~----lLPAsQtrdKdalt~E~v~~vv~eL~~--~~fDyIi~DsPAGIE~G~~~A~~~A---d~AiVVt 143 (272)
T COG2894 76 KD--KRLEN-LF----LLPASQTRDKDALTPEGVKKVVNELKA--MDFDYIIIDSPAGIEQGFKNAVYFA---DEAIVVT 143 (272)
T ss_pred CC--CCCCC-EE----ECCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEECCCCHHHHHHHHHHHCC---CEEEEEC
T ss_conf 03--56785-26----614432367222799999999999976--6998899648406778888654102---6379974
Q ss_pred CCCCCCHHH
Q ss_conf 389862026
Q gi|254780195|r 239 ALDVDDIYK 247 (544)
Q Consensus 239 ~~Dv~sIY~ 247 (544)
.|.++|+-+
T Consensus 144 nPEvSsVRD 152 (272)
T COG2894 144 NPEVSSVRD 152 (272)
T ss_pred CCCCCCCCC
T ss_conf 887554234
No 134
>pfam01965 DJ-1_PfpI DJ-1/PfpI family. The family includes the protease PfpI. This domain is also found in transcriptional regulators.
Probab=92.56 E-value=0.091 Score=33.36 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=35.1
Q ss_pred HCCCCEEEECCCCCCC----CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 2169839973777865----50168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFGKR----GSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG~R----GieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..++|.+++|||++.. .-+--+..++.+.+++.++.+||-|-.+.
T Consensus 32 ~~~~D~lvipGG~~~~~~l~~~~~~~~~l~~~~~~~~~i~aiC~g~~~L 80 (141)
T pfam01965 32 ADDYDALVIPGGHAAAEDLRDDEKLVKFVKEFYEAGKPIAAICHGPVLL 80 (141)
T ss_pred HHHCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHHHH
T ss_conf 5249999996994067664019999999999998399899987668999
No 135
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=92.47 E-value=0.35 Score=29.13 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=38.6
Q ss_pred HCCCCEEEECCC------CCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 216983997377------786-55016888998874047632235576999999
Q gi|254780195|r 344 FYGVHGILVPGG------FGK-RGSEGKIAAIKFARENKIPFLGICFGMQMAVI 390 (544)
Q Consensus 344 L~~~dGIlVPGG------FG~-RGieGkI~Ai~yARen~iP~LGIClGmQ~avI 390 (544)
-+++||++|.|- |-. .=++-....+.||++|....|+||.|-|.|+-
T Consensus 60 ~~~~DglIITGAPve~l~fe~v~YW~El~~i~dwa~~~v~stl~iCWaA~Aal~ 113 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY 113 (175)
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH
T ss_conf 177766897189988788343877999999999998736633456499999999
No 136
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.43 E-value=0.7 Score=26.96 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CEEEEC--CCCCCC--------CCHHHHHCCCCEEEECCCCCCCC---CHHHHHHHHHH
Q ss_conf 46888888888878736724-167722--565672--------34456621698399737778655---01688899887
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKV-QLSWID--AETLEK--------EDPVKHFYGVHGILVPGGFGKRG---SEGKIAAIKFA 371 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv-~i~wId--se~le~--------~~~~~~L~~~dGIlVPGGFG~RG---ieGkI~Ai~yA 371 (544)
++.+..|.|..|....+... ++.++. .+.+.. +...+.+..+|-++||||.+.+- -+.-+..++.+
T Consensus 13 ~~~~~~evl~~An~~~~~~~~~~~~vs~~g~~V~ss~G~~i~~d~~~~~~~~~D~livpgg~~~~~~~~~~~l~~~L~~~ 92 (187)
T cd03137 13 DLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVDGRPPPPALLAALRRA 92 (187)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEEECCCCHHHCCCCCEEEECCCCCHHHCCCCHHHHHHHHHH
T ss_conf 99999999999898559998799999569991584799789537653345646999988988611025999999999999
Q ss_pred HCCCCCHHHHHHHHHHH
Q ss_conf 40476322355769999
Q gi|254780195|r 372 RENKIPFLGICFGMQMA 388 (544)
Q Consensus 372 Ren~iP~LGIClGmQ~a 388 (544)
+.++....|||-|-.+.
T Consensus 93 ~~~~~~l~~ictG~~~L 109 (187)
T cd03137 93 AARGARVASVCTGAFVL 109 (187)
T ss_pred HHCCCEEEEECCCCHHH
T ss_conf 75386688753140988
No 137
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=92.31 E-value=0.14 Score=31.91 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=37.1
Q ss_pred HCCCCEEEECCCCC-CC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21698399737778-65---50168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFG-KR---GSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG-~R---GieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..++|.++||||++ .+ --+-.+..++.+.+++.|..+||-|-++.
T Consensus 58 ~~~~D~liipGG~~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~G~~~L 106 (163)
T cd03135 58 LDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVL 106 (163)
T ss_pred CCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHHHH
T ss_conf 2017989986898217677669999999999998299479864548999
No 138
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.18 E-value=0.4 Score=28.75 Aligned_cols=85 Identities=24% Similarity=0.237 Sum_probs=41.9
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC---CCHHHHH-CCCCEEEECCCCCCCCCHHHHHH
Q ss_conf 7999952001481346888888888878736724167722565672---3445662-16983997377786550168889
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEK---EDPVKHF-YGVHGILVPGGFGKRGSEGKIAA 367 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~---~~~~~~L-~~~dGIlVPGGFG~RGieGkI~A 367 (544)
.|||||++. +-+.|- .+...+..--...+..+-+..-.++.+.. ......- .++|-+++-||=|+ .+.|
T Consensus 1 MKigIv~n~-~k~~a~-~~a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT-----~L~a 73 (278)
T PRK03708 1 MRFGIVARR-DKEEAL-KLAYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILAIGGDGT-----ILRI 73 (278)
T ss_pred CEEEEEEEC-CCHHHH-HHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHH-----HHHH
T ss_conf 999999218-998999-999999999998899899974786566655556767543578789999878689-----9999
Q ss_pred HHHHHCCCCCHHHHHHH
Q ss_conf 98874047632235576
Q gi|254780195|r 368 IKFARENKIPFLGICFG 384 (544)
Q Consensus 368 i~yARen~iP~LGIClG 384 (544)
.+.+ ..++|.|||=+|
T Consensus 74 ~~~~-~~~iPilGiN~G 89 (278)
T PRK03708 74 EHKT-KKEIPILSINMG 89 (278)
T ss_pred HHHC-CCCCCEEEEECC
T ss_conf 9964-789988988358
No 139
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.11 E-value=1.2 Score=25.38 Aligned_cols=121 Identities=22% Similarity=0.325 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHH
Q ss_conf 44444899999999999689828898544553348888886443507872798400255641133228747754680125
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTAKADNITAG 92 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~~~~niT~G 92 (544)
-|.||-.+|+.++.-|..+|++|..+-.|=|.--- |. +
T Consensus 9 ggvgkst~~~~la~~l~~~g~~v~~~d~di~gpsi-----p~----------------------------~--------- 46 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSI-----PK----------------------------M--------- 46 (169)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-----CE----------------------------E---------
T ss_conf 98819999999999999879978999713799975-----50----------------------------1---------
Q ss_pred HHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 89999998885777577402564602489899997078-89878999724312221230689999999987497768579
Q gi|254780195|r 93 RIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGN-EDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKAL 171 (544)
Q Consensus 93 kiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~-~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~ 171 (544)
-|| |-++..|++.+.... .+.|++|+-..==.||. .+.+. |. .. .+.+
T Consensus 47 ----------~rG----------p~~~~~i~q~l~~~~w~~lDyLIID~PPGtgD~-~lt~~----~~---~~---~d~~ 95 (169)
T cd02037 47 ----------WRG----------PMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE-HLTLA----QS---LP---IDGA 95 (169)
T ss_pred ----------EEC----------HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH-HHHHH----HH---CC---CCCE
T ss_conf ----------204----------738999999998525466788999689998707-78798----75---05---6747
Q ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEEC
Q ss_conf 999746754225662003478999999997499876-899923
Q gi|254780195|r 172 YIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPD-ILLIRA 213 (544)
Q Consensus 172 fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPD-iivcRs 213 (544)
.+=.| | ...-..=+..+++.++..|+..- ++.=||
T Consensus 96 IvVTT--P-----~~~s~~Da~r~i~~~~~~~i~i~GvVeNMs 131 (169)
T cd02037 96 VIVTT--P-----QEVALDDVRKAIDMFKKVNIPILGVVENMS 131 (169)
T ss_pred EEEEC--C-----CHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99946--9-----588999999999999975997079998796
No 140
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)). The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=91.38 E-value=0.087 Score=33.51 Aligned_cols=45 Identities=27% Similarity=0.438 Sum_probs=35.3
Q ss_pred CCCCEEEECCCCC-C---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 1698399737778-6---5501688899887404763223557699999
Q gi|254780195|r 345 YGVHGILVPGGFG-K---RGSEGKIAAIKFARENKIPFLGICFGMQMAV 389 (544)
Q Consensus 345 ~~~dGIlVPGGFG-~---RGieGkI~Ai~yARen~iP~LGIClGmQ~av 389 (544)
++||+++||||-+ . |.=+-.+.-+|-=-|.++|..-||.|=|+.+
T Consensus 75 ~~YDal~ipGG~a~~e~LR~d~~~~~lvR~f~e~gK~vaaIChgp~lLi 123 (189)
T TIGR01382 75 EDYDALVIPGGRASPEYLRLDEKVIRLVREFVEKGKPVAAICHGPQLLI 123 (189)
T ss_pred HHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEE
T ss_conf 2564789717735600014876899999998417881999845300000
No 141
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=91.13 E-value=0.19 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=35.3
Q ss_pred HCCCCEEEECCCCCCCC---CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21698399737778655---0168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFGKRG---SEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG~RG---ieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..++|+|++|||.|..- -+--+..++...+++.|.-.||-|-++.
T Consensus 60 ~~~yD~ivlPGG~g~~~l~~~~~~~~~i~~~~~~~k~iaaIC~gp~~L 107 (165)
T cd03134 60 ADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVL 107 (165)
T ss_pred HHHCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 622888997898588888529899999999997199299998757877
No 142
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.03 E-value=0.52 Score=27.90 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=40.3
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCC
Q ss_conf 923999937501444448999999999996-8982889854455334
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQA-HKYKVRVRKLDPYLNS 46 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~-~g~~v~~~K~DPYlNv 46 (544)
|+|-|-|.| =.|+||-.+++.++.-|-. +|.||-.+-+||=.|-
T Consensus 1 m~~~iaiyG--KGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dS 45 (275)
T PRK13233 1 MTRKIAIYG--KGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADS 45 (275)
T ss_pred CCCEEEEEC--CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 973899989--985446545999999999647988999797887613
No 143
>PRK06761 hypothetical protein; Provisional
Probab=91.01 E-value=0.42 Score=28.57 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=33.0
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9239999375014444489999999999968982889
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|||-|||-| ++|-||-.+|.-+.-+|..+|+.|..
T Consensus 1 m~kLIiIEG--lPGsGKSTta~~l~d~L~~~g~~v~~ 35 (281)
T PRK06761 1 MTKLIIIEG--LPGFGKSTTAHLLNDKLSQLKIEVEL 35 (281)
T ss_pred CCCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 961799966--89998014999999999866985389
No 144
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.77 E-value=0.78 Score=26.64 Aligned_cols=80 Identities=20% Similarity=0.119 Sum_probs=47.9
Q ss_pred EEEEEHHHCC--CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC----HHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf 9999520014--8134688888888887873672416772256567234----456621698399737778655016888
Q gi|254780195|r 293 KVAIVGKYIH--LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKED----PVKHFYGVHGILVPGGFGKRGSEGKIA 366 (544)
Q Consensus 293 ~IaiVGKY~~--l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~----~~~~L~~~dGIlVPGGFG~RGieGkI~ 366 (544)
+|+||.|+-. -.++...+.+-|. ...+++.+.++ ...... ....-..+|-+++-||=|+ .+.
T Consensus 5 ~VlIV~k~~~~~A~~~a~~l~~~L~------~rGi~v~~~~~-~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT-----~L~ 72 (304)
T PRK02645 5 LVIIAYKAGSPQAKEAAERCAKQLE------ARGIKVLMGPS-GPKDNPYPVFLASAEELPDLAIVLGGDGT-----VLA 72 (304)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHH------HCCCEEEECCC-CCCCCCCCCCCCCCCCCCCEEEEECCCHH-----HHH
T ss_conf 9999985899999999999999999------88899998444-34447776200144668889999786889-----999
Q ss_pred HHHHHHCCCCCHHHHHH-H
Q ss_conf 99887404763223557-6
Q gi|254780195|r 367 AIKFARENKIPFLGICF-G 384 (544)
Q Consensus 367 Ai~yARen~iP~LGICl-G 384 (544)
|++.+...++|+|||=+ |
T Consensus 73 aar~~~~~~iPilGiN~~G 91 (304)
T PRK02645 73 AARHLAPHDIPILSFNVGG 91 (304)
T ss_pred HHHHHCCCCCCEEEEECCC
T ss_conf 9998542699889982486
No 145
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=90.64 E-value=0.25 Score=30.13 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=38.9
Q ss_pred HCCCCEEEECCC-CCCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 216983997377-786550---168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGG-FGKRGS---EGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGG-FG~RGi---eGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
.+++|.+++||| .|.+.. +--+.-++...+++.|...||-|=++.
T Consensus 64 ~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L 112 (188)
T COG0693 64 AADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVL 112 (188)
T ss_pred CCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 1359899988997523221351789999999997699899984688998
No 146
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=90.63 E-value=1 Score=25.72 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 688888888887873672416772256
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAE 333 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse 333 (544)
+..+.+++..+..+.+.++++.+.++.
T Consensus 15 ~~~~~~g~~~~~~~~g~~~~l~~~~~~ 41 (269)
T cd01391 15 GAQLLAGIELAAEEIGRGLEVILADSQ 41 (269)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 999999999999981997699998499
No 147
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=90.61 E-value=1.1 Score=25.44 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCC--CC--------CCCHHHHHCCCCEEEECCCCCCCCC---HHHHHHHHHHH
Q ss_conf 46888888888878736724167722565--67--------2344566216983997377786550---16888998874
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAET--LE--------KEDPVKHFYGVHGILVPGGFGKRGS---EGKIAAIKFAR 372 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse~--le--------~~~~~~~L~~~dGIlVPGGFG~RGi---eGkI~Ai~yAR 372 (544)
.+.+.+|.|..|.. .....++.++..+. +. .+...+.+..+|-++||||+|.+-. +.-+..++-+.
T Consensus 13 ~~~~~~evl~~a~~-~~~~~~v~~vs~~~~~v~ss~G~~v~~d~~~~~~~~~D~lvvpGg~~~~~~~~~~~l~~~Lr~~~ 91 (183)
T cd03139 13 DVIGPYEVFGRAPR-LAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQA 91 (183)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEEECCCCCEEECCCCEEECCCCHHHCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHH
T ss_conf 99999999983344-38986999997699907867980896058844667589999879987453048989999999987
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0476322355769999
Q gi|254780195|r 373 ENKIPFLGICFGMQMA 388 (544)
Q Consensus 373 en~iP~LGIClGmQ~a 388 (544)
.++....+||-|--+.
T Consensus 92 ~~g~~i~siCtGa~~L 107 (183)
T cd03139 92 ARAKYVTSVCTGALLL 107 (183)
T ss_pred HCCCEEEEECHHHHHH
T ss_conf 6198389873767999
No 148
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=90.50 E-value=0.13 Score=32.16 Aligned_cols=171 Identities=16% Similarity=0.211 Sum_probs=100.4
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCCCCCCCCCCCHHHHC
Q ss_conf 92399993750144444899999999999689828898544553348888886443-50787279840025564113322
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQH-GEVFVTDDGGEADLDFGHYERFM 79 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eH-GEVfVt~DG~EtDlDlG~YERFl 79 (544)
||+-|-||||.-|| | |++..+|+..|+.|. +-|.=.=.=|++ ++++- + --++|-
T Consensus 1 ~m~~IgiTG~igsG--K----Stv~~~l~~~G~~vi--------daD~i~~~l~~~~~~~~~-----~------i~~~fg 55 (199)
T PRK00081 1 MMLIIGLTGGIGSG--K----STVANIFAELGVPVI--------DADKIAHQVLEPGGPALE-----A------IVEHFG 55 (199)
T ss_pred CCEEEEEECCCCCC--H----HHHHHHHHHCCCCEE--------EHHHHHHHHHHHCHHHHH-----H------HHHHHH
T ss_conf 97899957888777--9----999999998899399--------637999999970759999-----9------999853
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 87477546801258999999888577757740256460248989999707889878999724312221230689999999
Q gi|254780195|r 80 GISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQF 159 (544)
Q Consensus 80 ~~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl 159 (544)
+.-+..++.+--.++=..|......-..|-+.+ -|+|-.+|.+++........++++|+- .++|+
T Consensus 56 ~~i~~~~g~idr~~L~~~vF~d~~~~~~Le~ii--HP~V~~~i~~~~~~~~~~~~~iv~e~p---------LL~E~---- 120 (199)
T PRK00081 56 SEILLADGELDRRKLRERVFSNPEERKWLEAIL--HPLIREEIQEQLQQAESPEKYVVLDIP---------LLFEN---- 120 (199)
T ss_pred HHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCEEEEECH---------HHHHC----
T ss_conf 631377787569999999867989999999987--799999999999986469978999431---------67653----
Q ss_pred HHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9874977685799997467542256620034789999999974-99876899923875899999999864
Q gi|254780195|r 160 GNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQAL-GVHPDILLIRADRDIPEMERRKISLF 228 (544)
Q Consensus 160 ~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~-GIqPDiivcRse~~l~~~~k~KIalf 228 (544)
+. .-...+|.++.+.- .+| .+.|.+- |+..+.+--|-...++.+.+.+.|-|
T Consensus 121 ----~~------~~~~d~vi~V~a~~-----~~r--~~Rl~~R~~~~~~~~~~r~~~Q~~~~~k~~~aD~ 173 (199)
T PRK00081 121 ----GL------YKWFDRVLVVDVPP-----EIQ--LERLMARDGLSEEEAEAILASQMSREEKLARADD 173 (199)
T ss_pred ----CC------HHCCCEEEEEECCH-----HHH--HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCE
T ss_conf ----60------12078579998699-----999--9999974899899999999958998999996999
No 149
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=90.44 E-value=1.4 Score=24.82 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=4.8
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999997499
Q gi|254780195|r 194 HSVKELQALGV 204 (544)
Q Consensus 194 hSVk~Lrs~GI 204 (544)
-.+++.+..||
T Consensus 72 ~~i~~A~~aGI 82 (298)
T cd06302 72 PVLKKAREAGI 82 (298)
T ss_pred HHHHHHHHCCC
T ss_conf 99999986798
No 150
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=90.00 E-value=0.84 Score=26.38 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=37.8
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 3999937501444448999999999996898288985445533488
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDP 48 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~ 48 (544)
|-|-|.| =-|+||-.+++.++.-|..+|+||..+-+||..|--.
T Consensus 1 ~~iaiyG--KGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~ 44 (212)
T cd02117 1 RQIAIYG--KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTR 44 (212)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCH
T ss_conf 9599988--9835687789999999998699699990389987330
No 151
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=89.86 E-value=1.4 Score=24.76 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHC--CCCCCCEEEEECCCC--CCCCCCCHHHHHHHHHHHH
Q ss_conf 680125899999988857775774025646024898999970--788987899972431--2221230689999999987
Q gi|254780195|r 87 DNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQ--GNEDADFVICEIGGT--IGDIEVMPFVEAIRQFGNE 162 (544)
Q Consensus 87 ~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~--~~~~~Dv~ivEiGGT--VGDIEs~pFlEAiRQl~~e 162 (544)
+|||.| ++.-+ .+-|.| |.++..|+.. ...+||++++.+|.- -......-|.+.+++|-..
T Consensus 8 dsit~g-------d~~n~-G~~G~t-------~~~~~~r~~~~v~~~~PdiV~i~~GtND~~~~~~~~~~~~~~~~li~~ 72 (157)
T cd01833 8 DSITWG-------DKDHE-GHSGYL-------IDQIAAAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQ 72 (157)
T ss_pred CCCCCC-------CCCCC-CCCCCC-------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 755457-------89999-978444-------999999889889867998999973667533484658999999999999
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCCH
Q ss_conf 49776857999974675422566200
Q gi|254780195|r 163 FSHRGSKALYIHLTLMPYIRSSGELK 188 (544)
Q Consensus 163 ~g~~~~n~~fiHvtlvP~l~~~gE~K 188 (544)
+-...-++..+-.+++|.....+..+
T Consensus 73 ir~~~P~~~iiv~~~~P~~~~~~~~~ 98 (157)
T cd01833 73 MRAANPDVKIIVATLIPTTDASGNAR 98 (157)
T ss_pred HHHHCCCCEEEEEECCCCCCCCCHHH
T ss_conf 99978998799985788887631778
No 152
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=89.70 E-value=0.52 Score=27.86 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=35.4
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 99937501444448999999999996898288985445533488
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDP 48 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~ 48 (544)
|-|+| =-|+||-.+|+.++.-|..+|.||-.+-+||++|--.
T Consensus 3 iai~G--KGGVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~ 44 (269)
T pfam00142 3 IAIYG--KGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTR 44 (269)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 89989--9976889999999999998799099984589987414
No 153
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=89.06 E-value=1.2 Score=25.37 Aligned_cols=47 Identities=28% Similarity=0.313 Sum_probs=40.5
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 2399993750144444899999999999689828898544553348888
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGT 50 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~Gt 50 (544)
||-|-|-| =-|+||-.||+-++.-|-..|.||-.+-+||+=|--.|-
T Consensus 1 m~~ia~yG--KGGVGKTTTavNLAaALA~~GkkVLlID~DPqgnaTs~L 47 (292)
T PRK13230 1 MKQIAFYG--KGGIGKSTTVCNLAAALSKSGKKVIVVGCDPKHDCTSNL 47 (292)
T ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf 96799917--998578989999999999879959997767977542530
No 154
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=88.81 E-value=1.2 Score=25.26 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=29.5
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 14444489999999999968982889854455
Q gi|254780195|r 12 VSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 12 ~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
=-|.||-.++..++..|..+|++|..+-+||=
T Consensus 8 KGGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ 39 (104)
T cd02042 8 KGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99876899999999999977992999977988
No 155
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.50 E-value=1.3 Score=25.08 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=36.8
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 9239999375014444489999999999968982889854455
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
|..-|=++| .||-||-.....+=..|+++|++|..+|=|+=
T Consensus 1 m~Pii~ivG--~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H 41 (170)
T PRK10751 1 MIPLLAIAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 41 (170)
T ss_pred CCCEEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 987799994--69999999999999999987984999945777
No 156
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=88.47 E-value=2.3 Score=23.25 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=70.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 25662003478999999997499876899923875899999999864198867724038986202668988764948899
Q gi|254780195|r 182 RSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVV 261 (544)
Q Consensus 182 ~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I 261 (544)
..+.--|--+..-.++.|-+. .|+|+.|.- ....-+.+|-+++|| ||+. .+-++=| -|
T Consensus 81 ~~s~~~kgEsl~Dta~vls~~---~D~iv~R~~---~~~~~~~~a~~~~vP---VINg---~~~~~HP----tQ------ 138 (334)
T PRK01713 81 TSSQIGHKESMKDTARVLGRM---YDAIEYRGF---KQSIVNELAKYAGVP---VFNG---LTDEFHP----TQ------ 138 (334)
T ss_pred CCCCCCCCCCHHHHHHHHHHH---CCEEEEECC---CHHHHHHHHHHCCCC---EEEC---CCCCCCH----HH------
T ss_conf 124578998999999999962---858999546---728999999865998---8938---9787775----89------
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 99838788886204789999987418434379999520014813468888888888787367241677225656
Q gi|254780195|r 262 LNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL 335 (544)
Q Consensus 262 ~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l 335 (544)
-|.++-.+.+....+.+.++|++||. .+-++..|+.+++...+.++.+ +..+.+
T Consensus 139 ------------~LaDl~Ti~E~~~~~l~gl~ia~vGD------~~nnv~~S~~~~~~~lG~~v~i--~~P~~~ 192 (334)
T PRK01713 139 ------------MLADVLTMIEHCEKPLSEISYVYIGD------ARNNMGNSLLLIGAKLGMDVRI--CAPKAL 192 (334)
T ss_pred ------------HHHHHHHHHHHHCCCCCCEEEEEECC------CCCCHHHHHHHHHHHCCCEEEE--ECCCCC
T ss_conf ------------99889999998416546749999389------7541889999999977997999--889765
No 157
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=88.22 E-value=0.98 Score=25.92 Aligned_cols=142 Identities=24% Similarity=0.370 Sum_probs=79.7
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99937501444448999999999996898288985445533488888864435078727984002556411332287477
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTA 84 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~ 84 (544)
|=+|| +-|.||-..-+.++..|..+|+||..+=+||=
T Consensus 41 vG~TG--~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~----------------------------------------- 77 (333)
T TIGR00750 41 VGITG--VPGAGKSTLVEKLIMELRRRGLKVAVIAVDPS----------------------------------------- 77 (333)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC-----------------------------------------
T ss_conf 76646--88885777999998999765976899988797-----------------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHCC------CCCCCCEEECC---------CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 546801258999999888577------75774025646---------024898999970788987899972431222123
Q gi|254780195|r 85 KADNITAGRIYKNVIDRERRG------DYLGTTVQVIP---------HVTNEIKEFITQGNEDADFVICEIGGTIGDIEV 149 (544)
Q Consensus 85 ~~~niT~Gkiy~~vi~kER~G------~ylG~TVQvIP---------HvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs 149 (544)
|-+|.|.|.=+=+.=.|-- -==|-=+-=+| .=|+|...-.. +-++||+|||==| ||-+|-
T Consensus 78 --SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~lGGls~at~~~~~lld--A~G~DVI~vETVG-VGQSEV 152 (333)
T TIGR00750 78 --SPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSLGGLSKATRELVKLLD--AAGYDVILVETVG-VGQSEV 152 (333)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH--HCCCCEEEEEEEC-CCHHHH
T ss_conf --59755145456887754422223322898567677666752578799999999998--6389879998415-752487
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCH
Q ss_conf 0689999999987497768579999746754225662003478999999997499876899923-875899
Q gi|254780195|r 150 MPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA-DRDIPE 219 (544)
Q Consensus 150 ~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs-e~~l~~ 219 (544)
+=++ -.+ +||-||+ +.+..+ -|--=+-|+++| ||+|.== +.+=-+
T Consensus 153 ----di~~--------~aD--T~v~v~~---pg~GDd-----~Q~iKaG~mEia---DI~VVNKaD~~~a~ 198 (333)
T TIGR00750 153 ----DIIN--------MAD--TFVVVTI---PGTGDD-----VQGIKAGVMEIA---DIYVVNKADGEGAE 198 (333)
T ss_pred ----HHHH--------HHC--EEEEEEC---CCCCCH-----HHHHHHHHHEEE---EEEEEECCCCCCHH
T ss_conf ----8873--------415--0589854---887834-----666654430232---48788168876658
No 158
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=88.18 E-value=1.3 Score=24.98 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCCCCCCCCCCC
Q ss_conf 9239999375014444489999999999968982889854455-33488888864435
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY-LNSDPGTMSPVQHG 57 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY-lNvD~GtmsP~eHG 57 (544)
|||-+=++| .|+-||-....+|-..|+.+||+|..+|-++= +.+|.-.=-.|.|.
T Consensus 1 m~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~ 56 (161)
T COG1763 1 MMKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHR 56 (161)
T ss_pred CCCEEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 972899996--27997342899999999757937999986587777788987661000
No 159
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=87.89 E-value=0.65 Score=27.21 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=35.6
Q ss_pred HCCCCEEEECCCCCC--CCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 216983997377786--550168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFGK--RGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG~--RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..++|.+++|||... +--+.-+..++...+++.+.-+||-|-++.
T Consensus 58 ~~~~D~lvlPGG~~~~~~~~~~l~~~l~~~~~~gk~iaaIC~g~~vL 104 (170)
T cd03140 58 PEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLAL 104 (170)
T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 02177899868875100249999999999987499099986558999
No 160
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=87.11 E-value=1.7 Score=24.10 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=38.3
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 9239999375014444489999999999968982889854455334888
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPG 49 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~G 49 (544)
|.+-|.|.| =.|+||-.++|-++.-|-.+|.||..+-+|| |.|.-
T Consensus 1 ~~~~iaiyG--KGGIGKSTttaNlsaALA~~GkkV~~IgcDP--k~DsT 45 (269)
T PRK13185 1 MALVLAVYG--KGGIGKSTTSSNLSAALAKLGKKVLQIGCDP--KHDST 45 (269)
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCC--CCCCH
T ss_conf 953999978--9954788899999999997699389981899--73230
No 161
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=86.73 E-value=0.39 Score=28.81 Aligned_cols=74 Identities=24% Similarity=0.312 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC----C-CCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 888888878736724167722565672344566216983997377786----5-50168889988740476322355769
Q gi|254780195|r 311 IEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGK----R-GSEGKIAAIKFARENKIPFLGICFGM 385 (544)
Q Consensus 311 ~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~----R-GieGkI~Ai~yARen~iP~LGIClGm 385 (544)
.++++|....+.....+..|+++.|..+. |. .+++-+++|||-.. . +-+|--.--+|. ++.=-|||||.|-
T Consensus 12 ~~~vk~~~~~L~~~~av~~v~~~~L~~~p-w~--~~~~llv~PGG~d~~y~~~l~~~g~~~i~~fV-~~GG~ylG~CaGa 87 (114)
T cd03144 12 PGSLKHLAELLRLYLAVSTVTADELAVGP-WE--SKTALLVVPGGADLPYCRALNGKGNRRIRNFV-RNGGNYLGICAGA 87 (114)
T ss_pred HHHHHHHHHHHHHHCCEEECCHHHHHCCC-CC--CCEEEEEECCCCCCHHHHHHCCHHHHHHHHHH-HCCCCEEEECCCC
T ss_conf 89999999999874364540699984495-42--67359994487676788884536679999999-7599479985531
Q ss_pred HHH
Q ss_conf 999
Q gi|254780195|r 386 QMA 388 (544)
Q Consensus 386 Q~a 388 (544)
=.+
T Consensus 88 Y~g 90 (114)
T cd03144 88 YLA 90 (114)
T ss_pred CCC
T ss_conf 035
No 162
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=86.26 E-value=1.4 Score=24.87 Aligned_cols=127 Identities=22% Similarity=0.315 Sum_probs=81.6
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 99993750144444899999999999689828898544553348888886443507872798400255641133228747
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIST 83 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l 83 (544)
-+|-|| +++||-+++|-+.+.|+.+|++|..+| |.|-
T Consensus 2 ~~~GTd---T~VGKT~vt~~l~~~l~~~G~~v~~~K-------------Pv~t--------------------------- 38 (134)
T cd03109 2 MGFGTG---TDIGKTVATAILARALKEKGYRVAPLK-------------PVQT--------------------------- 38 (134)
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEC-------------HHHC---------------------------
T ss_conf 575278---887689999999999997799177875-------------6672---------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCC-CC-CCCCHHHHHHHHHHH
Q ss_conf 7546801258999999888577757740256460248989999707889878999724312-22-123068999999998
Q gi|254780195|r 84 AKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTI-GD-IEVMPFVEAIRQFGN 161 (544)
Q Consensus 84 ~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTV-GD-IEs~pFlEAiRQl~~ 161 (544)
.|+++||=-|-. =- -+..-+..-++++
T Consensus 39 -------------------------------------------------~D~vlVEGaGG~~vPl~~~~~~~Dl~~~l-- 67 (134)
T cd03109 39 -------------------------------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKEL-- 67 (134)
T ss_pred -------------------------------------------------CCEEEEECCCCEEECCCCCCCHHHHHHHH--
T ss_conf -------------------------------------------------79899988977460038986299999970--
Q ss_pred HCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC---CCCCCHHHHHHHHHHCCCCHHHEE
Q ss_conf 7497768579999746754225662003478999999997499876899923---875899999999864198867724
Q gi|254780195|r 162 EFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA---DRDIPEMERRKISLFCNVPMSAVI 237 (544)
Q Consensus 162 e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs---e~~l~~~~k~KIalfc~V~~~~Vi 237 (544)
+- .+..|-= ..+++.+ -|=-++..+|+.||..-=++.-+ +.++.++..+-|..++++|.=.++
T Consensus 68 --~~---pvIlV~~---~~LG~IN-----htlLt~eal~~~gi~v~G~i~N~~~~~~~~~~~N~~~I~~~t~vPvLG~v 133 (134)
T cd03109 68 --NL---PAILVTS---AGLGSIN-----HAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVETIERLTGIPVLGIV 133 (134)
T ss_pred --CC---CEEEEEC---CCCCHHH-----HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf --99---9899977---8878589-----99999999998799288999946799710678759999997499977828
No 163
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=85.92 E-value=2.8 Score=22.57 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=45.9
Q ss_pred EEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC---CCHHH-HHCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf 999952001481346888888888878736724167722565672---34456-62169839973777865501688899
Q gi|254780195|r 293 KVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEK---EDPVK-HFYGVHGILVPGGFGKRGSEGKIAAI 368 (544)
Q Consensus 293 ~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~---~~~~~-~L~~~dGIlVPGGFG~RGieGkI~Ai 368 (544)
|||++=|. .-.|-+.++.+..+-++-+++.++. ..||+.=.. +.... .-+++|||++.+. ..++...++
T Consensus 1 kIa~~~~~-~~~~f~~~~~~G~~~~A~~~G~~~~--v~d~~~d~~~Q~~~i~~~i~~~vDgIii~p~----d~~~~~~~l 73 (273)
T cd06305 1 RIAVVRYG-GSGDFDQAYLAGTKAEAEALGGDLR--VYDAGGDDAKQADQIDQAIAQKVDAIIIQHG----RAEVLKPWV 73 (273)
T ss_pred CEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEE--EECCCCCHHHHHHHHHHHHHCCCCEEEEECC----CHHHHHHHH
T ss_conf 98999717-8897999999999999997499899--9739999999999999999859999999468----714448999
Q ss_pred HHHHCCCCCHHHH
Q ss_conf 8874047632235
Q gi|254780195|r 369 KFARENKIPFLGI 381 (544)
Q Consensus 369 ~yARen~iP~LGI 381 (544)
+-|++.+||..-+
T Consensus 74 ~~a~~aGIPVV~~ 86 (273)
T cd06305 74 KRALDAGIPVVAF 86 (273)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9999859978998
No 164
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=85.82 E-value=1.8 Score=23.93 Aligned_cols=39 Identities=31% Similarity=0.290 Sum_probs=35.2
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 99937501444448999999999996898288985445533
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlN 45 (544)
|=|+|| ||-||-..|..|...|...|.++..+.+|-|-.
T Consensus 2 IgIaG~--SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~ 40 (179)
T cd02028 2 VGIAGP--SGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 899898--977899999999999846488539995466645
No 165
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=85.64 E-value=1.9 Score=23.79 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=37.6
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 2399993750144444899999999999689828898544553348
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSD 47 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD 47 (544)
||-|-|-| =-|+||-.+++-+++-|-..|+||..+-+||=.|--
T Consensus 1 m~~iaiyG--KGGVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT 44 (274)
T PRK13235 1 MRKVAIYG--KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADST 44 (274)
T ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 96799979--985547678999999999789979998989845366
No 166
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=85.48 E-value=3.3 Score=22.12 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHCC------CCCEEEECCC--CC--------CCCCHHHHHCCCCEEEECCCCCCCCC------HH
Q ss_conf 468888888888787367------2416772256--56--------72344566216983997377786550------16
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYT------KVQLSWIDAE--TL--------EKEDPVKHFYGVHGILVPGGFGKRGS------EG 363 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~------kv~i~wIdse--~l--------e~~~~~~~L~~~dGIlVPGGFG~RGi------eG 363 (544)
++.+..|.|..|..-.+. ..++..+..+ .+ ..+........+|-++|||+.|.... +.
T Consensus 13 ~~~~~~evl~~An~~~~~~~~~~~~~~~~~vs~~~~~v~~s~g~~i~~d~~~~~~~~~D~livpg~~~~~~~~~~~~~~~ 92 (195)
T cd03138 13 SLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGGPVLLAGGILILPDATLADVPAPDLVIVPGLGGDPDELLLADNPA 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEECCCCEEECCCCHHHCCCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf 99999999999998634403899987999997789935718997796786844566568899757667863012336999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 8889988740476322355769999
Q gi|254780195|r 364 KIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 364 kI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
-+.-++.+..++.+..|||-|.-+.
T Consensus 93 l~~~L~~~~~~g~~i~sictGa~~L 117 (195)
T cd03138 93 LIAWLRRQHANGATVAAACTGVFLL 117 (195)
T ss_pred HHHHHHHHHHHCCEEECCCHHHHHH
T ss_conf 9999998665271784165899999
No 167
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=85.41 E-value=2.7 Score=22.74 Aligned_cols=383 Identities=20% Similarity=0.263 Sum_probs=203.0
Q ss_pred EEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 99375014444489999999999968982889854455334888888644350787279840025564113322874775
Q gi|254780195|r 6 FITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTAK 85 (544)
Q Consensus 6 ~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~~ 85 (544)
+|.-|--|.+||-++|-.|-++|-.|+|+|-.-|.=|=- |||+-=+ |==|++=|=||--|..
T Consensus 2 VviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVGPDY-IDP~fH~-----------------~aTGr~sRNLDsF~~~ 63 (464)
T TIGR00379 2 VVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVGPDY-IDPSFHT-----------------LATGRKSRNLDSFFMS 63 (464)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCC-CCCCCCC-----------------CCCCCCCCCCCHHHHH
T ss_conf 788305687547899999999986186324654425874-3788454-----------------1147866676853302
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCC--CEEEEECCCCCCCCCCCHHHHHHH------
Q ss_conf 468012589999998885777577402564602489899997078898--789997243122212306899999------
Q gi|254780195|r 86 ADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDA--DFVICEIGGTIGDIEVMPFVEAIR------ 157 (544)
Q Consensus 86 ~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~--Dv~ivEiGGTVGDIEs~pFlEAiR------ 157 (544)
++. |++...+..++. |+-||| |--|=+||.|| .|+.
T Consensus 64 ~~~---------------------------------i~~~F~~~~~~~Gs~~s~IE--Gv~GLYdg~Py-~a~~d~gStA 107 (464)
T TIGR00379 64 EAQ---------------------------------IKELFIRHSKGAGSDVSIIE--GVRGLYDGIPY-SAISDKGSTA 107 (464)
T ss_pred HHH---------------------------------HHHHHHHHHCCCCCCEEEEC--CCCCCCCCCCC-CCCCCCCCHH
T ss_conf 899---------------------------------99999986134789657972--74134367688-7768775188
Q ss_pred HHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE-------EECCCCCCHHHHHHHHHHC-
Q ss_conf 99987497768579999746754225662003478999999997499876899-------9238758999999998641-
Q gi|254780195|r 158 QFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILL-------IRADRDIPEMERRKISLFC- 229 (544)
Q Consensus 158 Ql~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiiv-------cRse~~l~~~~k~KIalfc- 229 (544)
....-+. .-+.|| ++ -+-=+|-.--=|+--|+ .+||+.+ .||++.+. .+|.-++-..
T Consensus 108 ~vAk~L~---~PvvLv-------~n--~~~L~~saaAiv~Gy~~--fdp~V~l~GVILN~V~~~rH~~-k~k~A~e~L~P 172 (464)
T TIGR00379 108 SVAKALD---APVVLV-------VN--AKRLSRSAAAIVLGYRS--FDPDVKLKGVILNRVGSERHLE-KLKTAVEKLAP 172 (464)
T ss_pred HHHHHHC---CCEEEE-------EE--CCHHHHHHHHHHHHHHH--CCCCCEEEEEEEEEECCHHHHH-HHHHHHHHHCC
T ss_conf 9999865---988999-------95--64033578677641343--0898317878873107744689-99999886368
Q ss_pred CCCHHHEEECC-CCC----CHHHHHHHHH-HCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH------------HCCCCCC
Q ss_conf 98867724038-986----2026689887-6494889999838788886204789999987------------4184343
Q gi|254780195|r 230 NVPMSAVIPAL-DVD----DIYKVPLSYH-REGIDSVVLNAFGIENVSLPQIDNWQTFCDR------------TLSLKNE 291 (544)
Q Consensus 230 ~V~~~~Vi~~~-Dv~----sIY~VPl~l~-~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~------------~~~~~~~ 291 (544)
+|+.=.||.=. |++ +.--||-.=. ++..++ +.+.|+.--.+--||++-..+.+. ...-++.
T Consensus 173 gi~vlG~~pR~~~l~~p~RHLGLVpa~E~l~~~~~~-~~~~la~~~e~~lD~~kl~~i~~~~~~~~~~~~~~~~~~~~~~ 251 (464)
T TIGR00379 173 GIEVLGVIPRKEDLKVPDRHLGLVPAVERLDEIIQQ-ILDWLAEVVEKYLDLDKLLEIAEKARELDSEMELLWEDENKKY 251 (464)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 945887773675321477546531661353178999-9999999999744977988874067877775210123456772
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHC-CCCEEEECCCCCCC---CC---HHH
Q ss_conf 799995200148134688888888887873672416772256567234456621-69839973777865---50---168
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFY-GVHGILVPGGFGKR---GS---EGK 364 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~-~~dGIlVPGGFG~R---Gi---eGk 364 (544)
+|||+.-. -...==|.-=+|+|+|.+ .++.++++ |++ +.|= ++|++-|=|||.+= +. +-+
T Consensus 252 ~kiava~D-~aFnFYY~dNld~L~~~~------a~l~ffsp--L~D----~eLPPdvD~lYiGGGfPElFae~L~~N~~l 318 (464)
T TIGR00379 252 VKIAVARD-QAFNFYYQDNLDALEENA------AELVFFSP--LED----KELPPDVDALYIGGGFPELFAEELEKNEKL 318 (464)
T ss_pred EEEEEEEE-CCCCHHHHHHHHHHHHCC------CEEEEECC--CCC----CCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 37899973-321403577899997478------27985177--668----779712157650788524536533444899
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH-HHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEE-EE
Q ss_conf 8899887404763223557699999999875168899970-003566664121150112346530015655467402-31
Q gi|254780195|r 365 IAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACS-TEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATM-RL 442 (544)
Q Consensus 365 I~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnS-tEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTM-RL 442 (544)
...|+---..+.|.+|=|.|+=.. + .| +++.-.-.|.+.++|... .|+|-+ =|
T Consensus 319 ~~~i~~f~~~G~P~YGECGGLMYL---------~----~Sl~~~Eg~~~PM~g~LP~~~------------~M~~~~Q~l 373 (464)
T TIGR00379 319 RDSIKEFIQQGRPIYGECGGLMYL---------S----ESLDNVEGEIFPMVGLLPLAA------------KMTGRVQGL 373 (464)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHH---------C----CCCCCCCCEEECCCCCCCCCE------------EECCEECCC
T ss_conf 999999973788389850604432---------0----010158970542113138731------------414310001
Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHH-HCCCEEEEE-CCCC
Q ss_conf 65257855870668863798476602523332788998999-789599998-6999
Q gi|254780195|r 443 GAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLE-GCGLKFSGF-SVDH 496 (544)
Q Consensus 443 G~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le-~~Gl~~sg~-~~d~ 496 (544)
|=.......+.+..+-=.+-.=.|=||=|-=--+.-.-++. .-|+-+.+. ..||
T Consensus 374 gY~~a~~l~~~~i~~~~~k~~GHEFHyS~~~~~~~~~fayrv~RG~gi~d~nt~DG 429 (464)
T TIGR00379 374 GYVVAEVLKDCLIAKKGEKFRGHEFHYSRLTKLKEAKFAYRVERGRGIIDQNTLDG 429 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEECCCEECCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 03223233212566527841020311301205887443556540421005756474
No 168
>PRK13768 GTPase; Provisional
Probab=85.28 E-value=2.5 Score=22.93 Aligned_cols=134 Identities=29% Similarity=0.463 Sum_probs=84.6
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCHHHHC
Q ss_conf 9239999375014444489999999999968982889854455334888888-644350787279840025564113322
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMS-PVQHGEVFVTDDGGEADLDFGHYERFM 79 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~Gtms-P~eHGEVfVt~DG~EtDlDlG~YERFl 79 (544)
|+..+||.| .-|=||-...+++...|++.|.+|..+-+ ||+.-+ || +.|.|+-.+=
T Consensus 1 M~~~~~ViG--paGSGKsT~~~~l~~~l~~~~r~~~vvNL------DPA~e~~pY------------~~~iDIRd~i--- 57 (253)
T PRK13768 1 MMYIVFFLG--TAGSGKTTLVGALSDWLEEQGYDVAIVNL------DPAVEYLPY------------KPDIDVREYV--- 57 (253)
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEC------CCCCCCCCC------------CCCCCHHHHC---
T ss_conf 971899989--99998899999999999976997599978------986658999------------9886378617---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 874775468012589999998885777577--402564602489899997078898789997243122212306899999
Q gi|254780195|r 80 GISTAKADNITAGRIYKNVIDRERRGDYLG--TTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIR 157 (544)
Q Consensus 80 ~~~l~~~~niT~Gkiy~~vi~kER~G~ylG--~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiR 157 (544)
+ |.+|+++..=|-=-| .+....-.=-|++++.+... +.|.+|+- |=|-||---+..+.+
T Consensus 58 ----------~----~~dVM~~~~LGPNGali~~~e~l~~~~d~l~~~i~~~--~~dY~i~D---~PGQiElft~~~~~~ 118 (253)
T PRK13768 58 ----------S----AREIMRKYGLGPNGALIASVDLLLTKAEEIKEEIERL--DADYVLVD---TPGQMELFAFRESGR 118 (253)
T ss_pred ----------C----HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEE---CCCCEEEEECCHHHH
T ss_conf ----------8----9999988198964689999999999899999998515--88759982---687443222340799
Q ss_pred HHHHHCCCCCCCEEEEEEEE
Q ss_conf 99987497768579999746
Q gi|254780195|r 158 QFGNEFSHRGSKALYIHLTL 177 (544)
Q Consensus 158 Ql~~e~g~~~~n~~fiHvtl 177 (544)
++-..+.+ ...+|-+|+.=
T Consensus 119 ~i~~~L~~-~~~~~~v~l~D 137 (253)
T PRK13768 119 YLVEKLSS-GSKSLSVYLID 137 (253)
T ss_pred HHHHHHHC-CCCEEEEEEEC
T ss_conf 99999863-68628999845
No 169
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=85.23 E-value=2.2 Score=23.42 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=37.2
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 923999937501444448999999999996898288985445533
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlN 45 (544)
|||-|-|-| =.|+||-.+++-++..|- .|+||..+-+||.-+
T Consensus 1 ~m~~iAiyG--KGGIGKSTt~~NlaaalA-~g~rVl~igcDpk~d 42 (264)
T PRK13231 1 VLKKIAIYG--KGGIGKSTTVSNMAAAYS-SDNSTLVIGCDPKAD 42 (264)
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCC
T ss_conf 942899978--985478889999999998-799779985688850
No 170
>PRK10037 cell division protein; Provisional
Probab=85.21 E-value=2.2 Score=23.43 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=35.2
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 239999375014444489999999999968982889854455
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
||-|.+.| +--|+||-.++|.++..|+..|-+|.+|-+||=
T Consensus 1 M~iial~s-~kGGVGkTTltAnLA~aL~~~g~~VlaID~dpq 41 (250)
T PRK10037 1 MAILGLQG-VRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 93799960-788876899999999999977991899957825
No 171
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=85.14 E-value=1.5 Score=24.50 Aligned_cols=36 Identities=39% Similarity=0.576 Sum_probs=30.6
Q ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 21698399737778655016888998874047632235576
Q gi|254780195|r 344 FYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 344 L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
-.++|-|++-||=|+ .+.|++.+...++|+|||=+|
T Consensus 33 ~~~~Dlii~lGGDGT-----~L~~~~~~~~~~~PilGin~G 68 (243)
T pfam01513 33 EEGVDLIVVLGGDGT-----ALDAARLLGDHDIPILGINTG 68 (243)
T ss_pred CCCCCEEEEECCCHH-----HHHHHHHHCCCCCCEEEEECC
T ss_conf 559889999898789-----999999845679958998569
No 172
>PRK11574 hypothetical protein; Provisional
Probab=84.66 E-value=0.64 Score=27.24 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=36.5
Q ss_pred HCCCCEEEECCCCC----CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21698399737778----6550168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFG----KRGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG----~RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..++|+|++|||++ -|.-+--+..++...+++.+.-.||-+=|..
T Consensus 64 ~~~yD~ivlPGG~~ga~~L~~~~~v~~~lk~~~~~gK~iAAICAaP~~v 112 (196)
T PRK11574 64 DGEYDVIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAPATV 112 (196)
T ss_pred CCCCCEEECCCCCHHHHHHHHCHHHHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf 2558889917880379998739899999999998799199982406999
No 173
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=84.59 E-value=1.1 Score=25.64 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=35.5
Q ss_pred HCCCCEEEECCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 216983997377786---550168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFGK---RGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG~---RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..++|+|++|||.|. |.-+-.+.-++..-+++.|.-.||-|=++.
T Consensus 74 ~~~yDai~iPGG~g~~~l~~d~~~~~li~~~~~~gK~iaaIChgp~~L 121 (180)
T cd03169 74 PDDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQIL 121 (180)
T ss_pred HHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 610999998998228777119799999999998199699778168999
No 174
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=84.34 E-value=3.7 Score=21.77 Aligned_cols=90 Identities=26% Similarity=0.264 Sum_probs=56.5
Q ss_pred CCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--------CCCC
Q ss_conf 343799995200148134688888888887873-6724167722565672344566216983997377--------7865
Q gi|254780195|r 289 KNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSN-YTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--------FGKR 359 (544)
Q Consensus 289 ~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~-~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--------FG~R 359 (544)
+...+|..|+-=..-.|.|.....+. .... ++++.-... ++.++..+.|.++|+|.|.|| .-.+
T Consensus 29 ~~~~~i~fIPtAs~d~~~y~~~~~~~---f~~l~~~~~~~l~~----~~~~d~~~~l~~ad~I~v~GGnt~~ll~~~~~~ 101 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAA---FESLRGVEVSHLHL----FDTEDPLDALLEADVIYVGGGNTFNLLAQWREH 101 (212)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH---HHCCCCCEEEEEEC----CCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHC
T ss_conf 79982999379888848999999998---61336962568752----486788999974999998897699999999978
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 50168889988740476322355769999
Q gi|254780195|r 360 GSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 360 GieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
|+ ..+++=|.++++|+.|.--|--++
T Consensus 102 ~l---~~~l~~~~~~G~~~~G~SAGa~~~ 127 (212)
T cd03146 102 GL---DAILKAALERGVVYIGWSAGSNCW 127 (212)
T ss_pred CH---HHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 98---999999997798899986157761
No 175
>PRK11670 putative ATPase; Provisional
Probab=84.32 E-value=1.7 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=13.9
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 688899887404763223557699
Q gi|254780195|r 363 GKIAAIKFARENKIPFLGICFGMQ 386 (544)
Q Consensus 363 GkI~Ai~yARen~iP~LGIClGmQ 386 (544)
-..+++..++..++|.+||---|-
T Consensus 256 Da~k~i~m~~k~~vpilGiVeNMs 279 (369)
T PRK11670 256 DAKKGIVMFEKVEVPVLGIVENMS 279 (369)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 999999999854888506886363
No 176
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.25 E-value=3.7 Score=21.74 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=86.6
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 39999375014444489999999999968982889854455334888888644350787279840025564113322874
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
+.+++.-....|.||-.+|+.++..|-..|+||-.+-.|=|=-.-|-.|. +-+.=+-+++-.|.+
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~--------~~~~~g~~~~~~g~~------- 121 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLG--------LENLPGLTELLAGEA------- 121 (265)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCC--------CCCCCCCCCCCCCCC-------
T ss_conf 61899975899875689999999999963993899967466986355408--------986556541137871-------
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HCCCCCCCCEEECCCH------HHHHHHHHHCCCCC-CCEEEEECCCCCCCCCCCHHHH
Q ss_conf 77546801258999999888-5777577402564602------48989999707889-8789997243122212306899
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRE-RRGDYLGTTVQVIPHV------TNEIKEFITQGNED-ADFVICEIGGTIGDIEVMPFVE 154 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kE-R~G~ylG~TVQvIPHv------TdeIk~~I~~~~~~-~Dv~ivEiGGTVGDIEs~pFlE 154 (544)
+..++..- .++=..+-.+. .|++ ...+++.|..+..+ +|++||+..=-.||.....+
T Consensus 122 ------------~~~~~~~~~~~~lsi~~~~~-~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~-- 186 (265)
T COG0489 122 ------------LEPVIQHDGIKVLSILPLGP-VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVL-- 186 (265)
T ss_pred ------------CCCCEECCCCCEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--
T ss_conf ------------14322026655047883288-998946776338999999997456888899969998642777887--
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999987497768579999746754225662003478999999997499876
Q gi|254780195|r 155 AIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPD 207 (544)
Q Consensus 155 AiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPD 207 (544)
+ .+ . + -+|-| ...++....=.+.++..|+..++.--
T Consensus 187 -----~-~~---~-~-g~viV------t~p~~~~~~~v~ka~~~~~~~~~~vl 222 (265)
T COG0489 187 -----Q-RI---P-D-GVVIV------TTPGKTALEDVKKAIDMLEKAGIPVL 222 (265)
T ss_pred -----H-HC---C-C-EEEEE------ECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf -----5-13---8-8-59999------66773559999999999987499347
No 177
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=84.12 E-value=2.6 Score=22.79 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=37.1
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 23999937501444448999999999996898288985445533488
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDP 48 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~ 48 (544)
||-|-|-| =.|+||-.+++-++.-|-..|+||..+-+||--|--.
T Consensus 1 ~~~iaiyG--KGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~ 45 (273)
T PRK13232 1 MRQIAIYG--KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTR 45 (273)
T ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
T ss_conf 95799979--9866588789999999997799699989788442777
No 178
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=84.00 E-value=3.4 Score=22.04 Aligned_cols=40 Identities=33% Similarity=0.250 Sum_probs=35.8
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 239999375014444489999999999968982889854455
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
||-|=+.| .|+-||-.....+-..|+.+||+|..+|=|+=
T Consensus 1 mkii~ivG--~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H 40 (159)
T cd03116 1 MKVIGFVG--YSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CEEEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 92999996--79999999999999999977985989973476
No 179
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=83.87 E-value=0.72 Score=26.86 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=32.2
Q ss_pred HCCCCEEEECCCCCC---------CCCHH-----HHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 216983997377786---------55016-----8889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFGK---------RGSEG-----KIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG~---------RGieG-----kI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
-.++|++++|||||. .|.+. -..+++-....++|.=-||-.=-++
T Consensus 80 ~~d~DaLiiPGGfGaAKNLs~fA~~g~~~~v~~~V~~~i~~f~~a~KPiG~iCIAP~l~ 138 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALA 138 (213)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 86789899788514555310021058875698999999999998499999975789999
No 180
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=83.36 E-value=2.9 Score=22.47 Aligned_cols=36 Identities=36% Similarity=0.384 Sum_probs=32.8
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 99937501444448999999999996898288985445
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDP 42 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DP 42 (544)
|.|+| =-|.||-.+||.++..|..+|++|..+-.||
T Consensus 2 ia~~G--KGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp 37 (116)
T cd02034 2 IAITG--KGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 78988--9977499999999999997899699998989
No 181
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=82.79 E-value=1.5 Score=24.63 Aligned_cols=162 Identities=20% Similarity=0.262 Sum_probs=90.9
Q ss_pred EEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEE---------CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHH
Q ss_conf 99375014444489999999999968982889854---------455334888888644350787279840025564113
Q gi|254780195|r 6 FITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKL---------DPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYE 76 (544)
Q Consensus 6 ~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~---------DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YE 76 (544)
|||| .=-++||-++++.+...||.+|++|..+|. |--+|-|+.++--. ++.+.|+|
T Consensus 1 FvTG-tDT~VGKT~~ss~La~~lk~~G~~~g~~Kpv~tG~~~~~~dL~~~D~~~L~~~---------~~~~~~~~----- 65 (187)
T TIGR00347 1 FVTG-TDTGVGKTVVSSALAKKLKKAGYSVGYYKPVQTGIEETAEDLRNEDTELLQNI---------SGTALDLD----- 65 (187)
T ss_pred CCEE-EECCCCHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCCCCCCHHHHHHHHHHH---------HHHHHHCC-----
T ss_conf 9102-24586178998999999997598525112000157667763105679999876---------54432138-----
Q ss_pred HHCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHH----CCCCCCCEEEEECCCCCCC--C-C
Q ss_conf 32287477546-8012589999998885777577402564602489899997----0788987899972431222--1-2
Q gi|254780195|r 77 RFMGISTAKAD-NITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFIT----QGNEDADFVICEIGGTIGD--I-E 148 (544)
Q Consensus 77 RFl~~~l~~~~-niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~----~~~~~~Dv~ivEiGGTVGD--I-E 148 (544)
- -.++==.|+.=+.=--..++=|++|. -++|.+.+. +..+++|.+|||=-|-+.= = |
T Consensus 66 ----------~Pi~~~P~~F~~PlsP~~A~~~Eg~~i~-----~~~~~~~~~naye~l~~~~d~~lVEGAGG~~vP~~r~ 130 (187)
T TIGR00347 66 ----------GPIEVNPYAFALPLSPHIAAKQEGRPID-----LEELSKHLRNAYEELEEKYDFVLVEGAGGLCVPITRE 130 (187)
T ss_pred ----------CCEEECCCCCCCCCCHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH
T ss_conf ----------9844266320568862588861778326-----8889878878999999717917998336242666612
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 3068999999998749776857999974675422566200347899999999749987
Q gi|254780195|r 149 VMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHP 206 (544)
Q Consensus 149 s~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqP 206 (544)
..-|..-+|+..-.-|+ +.=.|-|+= |-|++-|- |=-+++-+|+.||..
T Consensus 131 ~~t~~D~i~~~ietsGh---~L~~ilV~r-~~LGtiNH-----t~Lt~~~~~~~Gl~s 179 (187)
T TIGR00347 131 EYTVADLIKLLIETSGH---QLPVILVVR-VKLGTINH-----TLLTVEAARQTGLKS 179 (187)
T ss_pred HHHHHHHHHHHHHHCCC---CCEEEEEEC-CCCCHHHH-----HHHHHHHHHHCCCCE
T ss_conf 45799999999850588---202798746-86460679-----999999999779944
No 182
>KOG2825 consensus
Probab=82.44 E-value=1.8 Score=23.99 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=39.0
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 239999375014444489999999999968982889854455334
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNS 46 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNv 46 (544)
-|||||-| --|+||-..|+|++.-|-..+-+|-.|--||--|+
T Consensus 19 lKwifVGG--KGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825 19 LKWIFVGG--KGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred EEEEEECC--CCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 36999767--67767653126899998616886478616853116
No 183
>PHA02518 ParA-like protein; Provisional
Probab=82.36 E-value=4.4 Score=21.23 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 444448999999999996898288985445533
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlN 45 (544)
-|.||-.+|..++.-|..+|++|..+-+||=-|
T Consensus 10 GGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 42 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQGS 42 (211)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 997499999999999997899489997799967
No 184
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=82.34 E-value=0.6 Score=27.44 Aligned_cols=44 Identities=30% Similarity=0.481 Sum_probs=28.7
Q ss_pred CCCCEEEECCCCCC---------CCCHH-----HHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 16983997377786---------55016-----8889988740476322355769999
Q gi|254780195|r 345 YGVHGILVPGGFGK---------RGSEG-----KIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 345 ~~~dGIlVPGGFG~---------RGieG-----kI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
.++|++++|||||. .|.+. --.+++-....++|.=-||..=-++
T Consensus 84 ~d~DaLI~PGGfGaAKNLs~fA~~G~~~~V~p~V~~~i~~f~~a~KPiG~iCIaP~l~ 141 (217)
T PRK11780 84 EDFDALIVPGGFGAAKNLSNFAFKGAECSVDPEVKALARAFHQAGKPIGFICIAPAML 141 (217)
T ss_pred HHCCEEEECCCCHHHHCCCCHHHCCCCCEECHHHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 5678799678620443110165349986487899999999998099989860768999
No 185
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=82.19 E-value=1.9 Score=23.82 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 4444489999999999968982889854455334
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNS 46 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNv 46 (544)
.|+||-.++|.++.-|-..|.||..+-+||=+..
T Consensus 9 GGIGKSTttaNl~aaLA~~G~kVl~IgcDpk~Ds 42 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDS 42 (267)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 9657877899999999987995999778995155
No 186
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=82.10 E-value=3.9 Score=21.62 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=34.7
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 2399993750144444899999999999689828898544553
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYL 44 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYl 44 (544)
||-|.|.. .--|+||-.+++.+|.-|..+|.||-.+-+||=-
T Consensus 1 MkiIai~s-~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~ 42 (244)
T pfam06564 1 MAVLALQG-VRGGVGTTSLTAALGWALQQLGESVLVIDASPDN 42 (244)
T ss_pred CEEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 92999966-9998619999999999999779958999689874
No 187
>PRK13236 nitrogenase reductase; Reviewed
Probab=82.09 E-value=3.4 Score=21.99 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=34.8
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 239999375014444489999999999968982889854455
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
||-|-|-| =.|+||-.++|-+..-|-..|+||..+-+||=
T Consensus 6 mk~IAiYG--KGGIGKSTts~NlsAAlA~~G~rVl~IGCDPK 45 (295)
T PRK13236 6 IRQIAFYG--KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (295)
T ss_pred CEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 61899967--98434757899999999977996999788980
No 188
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=81.65 E-value=4.6 Score=21.05 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEE-ECCCCCC
Q ss_conf 44448999999999996898288985-4455334
Q gi|254780195|r 14 SLGKGVAAASLGALLQAHKYKVRVRK-LDPYLNS 46 (544)
Q Consensus 14 glGKGi~aaSig~lLk~~g~~v~~~K-~DPYlNv 46 (544)
|.||-.++.-++.-|-.+|+||-.+- +||==|.
T Consensus 117 GvGKTTTavnLA~~LAl~G~RVLlID~LDPQanl 150 (388)
T PRK13705 117 GVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 8559999999999999779908999587888656
No 189
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.58 E-value=2.3 Score=23.29 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=33.5
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 239999375014444489999999999968982889854455
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
||-|-|+. -=-|.||-.+|..++..|..+|+||-.+-+||=
T Consensus 1 MkiIav~n-~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ 41 (246)
T TIGR03371 1 MKVIAIVG-IKGGVGRTTLTAALASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CEEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 93999975-999854999999999999968997899975999
No 190
>PRK12743 acetoin dehydrogenase; Provisional
Probab=81.54 E-value=3.1 Score=22.32 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.|-.+||||- ||+|+.++ ..|-..|.+|...
T Consensus 1 M~KValITGgs-~GIG~a~a-----~~la~~Ga~V~i~ 32 (253)
T PRK12743 1 MAQVAIVTASD-SGIGKACA-----LLLAQQGFDIGIT 32 (253)
T ss_pred CCCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 99989990758-89999999-----9999879989997
No 191
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=81.19 E-value=3.8 Score=21.62 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=34.8
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 239999375014444489999999999968982889854455
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
||-|-|-| =.|+||-.++|.+..-|-..|.||..+-+||=
T Consensus 4 mr~IAiYG--KGGIGKSTtssNlsAAlA~~G~rVl~IGCDPK 43 (293)
T PRK13234 4 LRQIAFYG--KGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (293)
T ss_pred CCEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 75799977--98445877899999999977996999748983
No 192
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.95 E-value=2.2 Score=23.39 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 4444489999999999968982889854455334888888
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMS 52 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~Gtms 52 (544)
.|+||-.++|.++.-|-.+|.||..+-+|| +.|. ||.
T Consensus 9 GGIGKSTtsaNlsaaLA~~GkkVl~IGcDp--k~Ds-T~~ 45 (271)
T CHL00072 9 GGIGKSTTSCNISIALARRGKKVLQIGCDP--KHDS-TFT 45 (271)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCC--HHHH-HHH
T ss_conf 854485889999999998799799978997--3777-740
No 193
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=80.93 E-value=1.9 Score=23.81 Aligned_cols=70 Identities=24% Similarity=0.442 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC-------CCCCC--HHHH
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923-------87589--9999
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA-------DRDIP--EMER 222 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs-------e~~l~--~~~k 222 (544)
||+-||-|+. ++ |++|| +.+..| +-+|+|=|.+|| |=+=+|=| +.||| ++..
T Consensus 147 ~LgGIk~M~~-lP----d~l~v-------iD~~~E------~IAv~EA~kLgI-PvvA~vDTNCdPd~vD~~IPgNDDai 207 (227)
T TIGR01011 147 NLGGIKDMKK-LP----DLLFV-------IDPRKE------KIAVAEARKLGI-PVVAIVDTNCDPDVVDYPIPGNDDAI 207 (227)
T ss_pred HHHHHHHHHC-CC----CEEEE-------ECCCCC------HHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCHH
T ss_conf 5300254531-69----70899-------748210------689999733799-78987047888886650257973058
Q ss_pred HHHHHHCCCCHHHEEECC
Q ss_conf 999864198867724038
Q gi|254780195|r 223 RKISLFCNVPMSAVIPAL 240 (544)
Q Consensus 223 ~KIalfc~V~~~~Vi~~~ 240 (544)
+=|+|||++=.|+|.++-
T Consensus 208 rSi~L~~~~~AdAv~Eg~ 225 (227)
T TIGR01011 208 RSIRLLTSLIADAVLEGK 225 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998651
No 194
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=80.75 E-value=2.6 Score=22.82 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 44444899999999999689828898544553
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPYL 44 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPYl 44 (544)
-|.||-.+|+.++..|-.+|++|..+-+||.+
T Consensus 9 GGVGKTT~a~NLA~aLa~~g~~vllvD~D~~~ 40 (179)
T cd02036 9 GGVGKTTTTANLGTALAQLGYKVVLIDADLGL 40 (179)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98709999999999999779918999589999
No 195
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=80.62 E-value=2.5 Score=23.00 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEE-ECCCC
Q ss_conf 44448999999999996898288985-44553
Q gi|254780195|r 14 SLGKGVAAASLGALLQAHKYKVRVRK-LDPYL 44 (544)
Q Consensus 14 glGKGi~aaSig~lLk~~g~~v~~~K-~DPYl 44 (544)
|.||-.+|..++.-|-.+|+||-++- +||==
T Consensus 117 GVGKTTTavnLA~~LAl~G~RVL~ID~lDPQa 148 (387)
T PHA02519 117 GVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG 148 (387)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 77699999999999997699689995988520
No 196
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=80.47 E-value=2.4 Score=23.06 Aligned_cols=39 Identities=33% Similarity=0.401 Sum_probs=29.9
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 3999937501444448999999999996898288985445
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDP 42 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DP 42 (544)
+-|+||-|= =|+||-.|+|-||.=|=..|+||..+=.|=
T Consensus 2 ~viViTSGK-GGVGKTTtTANlG~aLA~lG~kVvliD~Di 40 (272)
T TIGR01968 2 RVIVITSGK-GGVGKTTTTANLGTALARLGKKVVLIDADI 40 (272)
T ss_pred EEEEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 589998178-897735898999999996198289995475
No 197
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.22 E-value=5.1 Score=20.72 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=15.2
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHC-CCCCHHHHH
Q ss_conf 6983997377786550168889988740-476322355
Q gi|254780195|r 346 GVHGILVPGGFGKRGSEGKIAAIKFARE-NKIPFLGIC 382 (544)
Q Consensus 346 ~~dGIlVPGGFG~RGieGkI~Ai~yARe-n~iP~LGIC 382 (544)
++++|+.+ ......|.+.|++-+-. .+|...|.-
T Consensus 183 di~ai~~~---nd~~a~ga~~al~~~g~~~~i~vvg~D 217 (273)
T cd06310 183 DLKGIFGA---NEGSAVGAARAVRQAGKAGKVKVVGFD 217 (273)
T ss_pred CCCEEEEC---CCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 87579843---848999999999977999993999989
No 198
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=80.22 E-value=5.1 Score=20.72 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923875899999999864198
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNV 231 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V 231 (544)
|.+++++ .|...+|+.|. +-.+.|++.+=|+. .++|.+. .||+|+.=+. |-....++... ++
T Consensus 20 ~~~~L~~----~G~~~~n~~~~------~~na~gd~~~~~~i--a~~l~~~--~~Dli~a~~T-paa~a~~~~~~---~i 81 (292)
T pfam04392 20 IQEALKD----FGYEPKNVLIK------VKNAEGDPSKAAQI--ARQLVTD--KNDLIIGIAT-PVAQILKSAIK---TI 81 (292)
T ss_pred HHHHHHH----CCCCCCCEEEE------EEECCCCHHHHHHH--HHHHHHC--CCCEEEECCC-HHHHHHHHHCC---CC
T ss_conf 9999997----59976565999------95078999999999--9999737--9989998750-99999998359---99
Q ss_pred CHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCC------CCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCH
Q ss_conf 867724038986202668988764948899998387888------86204789999987418434379999520014813
Q gi|254780195|r 232 PMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENV------SLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKD 305 (544)
Q Consensus 232 ~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~------~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~D 305 (544)
|. ||.+..-.- .-|| .+-+.-+.. ...+..+|-++..++.. . .-+|+++ |..-..
T Consensus 82 PI--Vf~~v~dPv---------~agl----v~s~~~pg~NvTGvs~~~~~~~~l~ll~~l~P-~-~k~igvi--yn~~e~ 142 (292)
T pfam04392 82 PI--VFAAVTDPV---------GAKL----VPSKEQPGENVTGVSDLVDVEQTIELIKKLLP-N-VKSIGVY--YSPSEA 142 (292)
T ss_pred CE--EEEEECCHH---------HHCC----CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC-C-CCEEEEE--ECCCCC
T ss_conf 98--999726856---------6066----44566899826785277479999999998688-9-8589999--579986
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 46888888888878736724167722565672344566216983997377786550168889988740476322355
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGIC 382 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIC 382 (544)
......+.++.++-..+.++...-+++.+--..-......+.|++++|.-+-.. ...-..+..|+++++|.++.-
T Consensus 143 ~s~~~~~~~~~~a~~~gi~l~~~~v~~~~ei~~a~~~l~~~~Dal~i~~d~~v~--s~~~~i~~~a~~~kiPv~~~~ 217 (292)
T pfam04392 143 NSVSLVEEIKKYAKKSGIKVVEASVPSSNDVPSAMSSMAGKVDAIFIPTDNLIA--SAFTAVLQEANKAKIPVITSD 217 (292)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHHCCCCEEECC
T ss_conf 579999999999997699899996688667999999743289889993781078--899999999997499989577
No 199
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=80.02 E-value=3.6 Score=21.81 Aligned_cols=68 Identities=22% Similarity=0.182 Sum_probs=48.3
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEEECC----CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 1444448999999999996898288985445----533488888864435078727984002556411332287477
Q gi|254780195|r 12 VSSLGKGVAAASLGALLQAHKYKVRVRKLDP----YLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTA 84 (544)
Q Consensus 12 ~SglGKGi~aaSig~lLk~~g~~v~~~K~DP----YlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~ 84 (544)
.|.=||=...+.+-..|+++||+|..||=|| =+.+|+..---|.|=| =|||.=+=..++++++-..+.
T Consensus 7 ~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~~GkDs~rhr~-----AGA~~v~~~~~~~~~~~~~~~ 78 (165)
T TIGR00176 7 YKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDKEGKDSYRHRE-----AGADAVIVASSERYAVMTETQ 78 (165)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCCCHHHHH-----CCCCEEEEECCCEEEEEEECC
T ss_conf 258867899999999997079950898608988875652799873133210-----436278866790689987528
No 200
>pfam02424 ApbE ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP).
Probab=80.00 E-value=3.3 Score=22.11 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8888888888787
Q gi|254780195|r 308 RSLIEALRHSGVS 320 (544)
Q Consensus 308 ~Si~EAL~hA~~~ 320 (544)
..+.+++.+.++.
T Consensus 76 ~~i~~~~~~vg~~ 88 (254)
T pfam02424 76 AEIAAALALVGYR 88 (254)
T ss_pred HHHHHHHHHCCHH
T ss_conf 9999998718937
No 201
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=79.89 E-value=5.3 Score=20.65 Aligned_cols=188 Identities=17% Similarity=0.277 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCC---------------C-CEEEEECCCCCCHHHHHHHHHHCCCCHHHEE--ECCCCCCHH
Q ss_conf 620034789999999974998---------------7-6899923875899999999864198867724--038986202
Q gi|254780195|r 185 GELKTKPTQHSVKELQALGVH---------------P-DILLIRADRDIPEMERRKISLFCNVPMSAVI--PALDVDDIY 246 (544)
Q Consensus 185 gE~KTKPTQhSVk~Lrs~GIq---------------P-DiivcRse~~l~~~~k~KIalfc~V~~~~Vi--~~~Dv~sIY 246 (544)
||+=--| +=|+.|++.|+. + |+++.|+ +-.+.++.+++.-- ++. |+ .||.|..+.
T Consensus 82 geIIHNp--~Vv~~L~~~Gv~~i~~~~~~kd~~~v~~gdvVIi~A-HGvs~~v~~~l~~k-gl~---ivDATCP~V~KV~ 154 (392)
T PRK13371 82 NEIIHNP--SVNQHLREMGVKFIPVEQGVKDFSVVTPGDVVILPA-FGATVQEMQLLHEK-GCH---IVDTTCPWVSKVW 154 (392)
T ss_pred CCCCCCH--HHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEC-CCCCHHHHHHHHHC-CCE---EEECCCCCCHHHH
T ss_conf 7874697--999999977999962456666320089999899969-99997899999988-997---9968983619999
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCC-----------CCHHH-------------HHHHHHHHC-------CCC-CCEEE
Q ss_conf 66898876494889999838788886-----------20478-------------999998741-------843-43799
Q gi|254780195|r 247 KVPLSYHREGIDSVVLNAFGIENVSL-----------PQIDN-------------WQTFCDRTL-------SLK-NEVKV 294 (544)
Q Consensus 247 ~VPl~l~~q~l~~~I~~~L~l~~~~~-----------~~l~~-------------W~~~~~~~~-------~~~-~~V~I 294 (544)
..-..+.++|..-+|.-+-+-+.... .|+.+ ...|..+.. .|. +-.++
T Consensus 155 ~~v~k~~k~gy~iII~G~~~HpEv~gt~s~a~~~~vV~~~eEa~~v~d~i~~~~~~~~fl~kf~~a~s~gfdPd~dl~kv 234 (392)
T PRK13371 155 NTVEKHKKHGFTSIIHGKYKHEETLATSSFAGTYLVVLDLEEAQYVADYILGGGDREEFLKRFAKACSPGFDPDRDLERV 234 (392)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 99999996898599977889871588424688558970589988898875078868999987533025677965564328
Q ss_pred EEEHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCEEEE------CCCCCCCCCHHHHH-C-CCCEEEECCCCCCCCCHHH
Q ss_conf 995200148134688888888887873672--416772------25656723445662-1-6983997377786550168
Q gi|254780195|r 295 AIVGKYIHLKDAYRSLIEALRHSGVSNYTK--VQLSWI------DAETLEKEDPVKHF-Y-GVHGILVPGGFGKRGSEGK 364 (544)
Q Consensus 295 aiVGKY~~l~DaY~Si~EAL~hA~~~~~~k--v~i~wI------dse~le~~~~~~~L-~-~~dGIlVPGGFG~RGieGk 364 (544)
|+|--=|-+.|-...|.+.|+-+-....-. ++-.++ +|.. +..++...| + .+|-++|=||+.+-...
T Consensus 235 gvv~QTTm~~~ete~I~~~l~~~~~~~~g~~~~~~hf~~fnTIC~ATq-~RQ~A~~~L~~~~vDlmiVVGG~NSSNT~-- 311 (392)
T PRK13371 235 GVANQTTMLKSETEEIGKLFERTMLRKYGPAELNEHFLSFNTICDATQ-ERQDAMFSLVEEPLDLMVVIGGFNSSNTT-- 311 (392)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHH--
T ss_conf 999454576899999999999998762384121123452388513018-99999999875478889994688884189--
Q ss_pred HHHHHHHHCCCCCHHHHHH
Q ss_conf 8899887404763223557
Q gi|254780195|r 365 IAAIKFARENKIPFLGICF 383 (544)
Q Consensus 365 I~Ai~yARen~iP~LGICl 383 (544)
.-.+-|+++++|.+=|--
T Consensus 312 -rL~EIa~~~g~pty~Ie~ 329 (392)
T PRK13371 312 -HLQEIAIERGIPSYHIDT 329 (392)
T ss_pred -HHHHHHHHHCCCEEEECC
T ss_conf -999999985998599388
No 202
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.86 E-value=2.6 Score=22.87 Aligned_cols=31 Identities=39% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9239999375014444489999999999968982889
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|.|-++|||+- ||+||.++ ..|-.+|++|..
T Consensus 1 MgK~vLITGAs-sGIGraiA-----~~la~~G~~Vi~ 31 (257)
T PRK09291 1 MSKTILITGAG-SGFGREVA-----LRLARKGHRVIA 31 (257)
T ss_pred CCCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 99989996898-58999999-----999987998999
No 203
>PRK04155 chaperone protein HchA; Provisional
Probab=79.64 E-value=1.5 Score=24.67 Aligned_cols=42 Identities=29% Similarity=0.532 Sum_probs=33.8
Q ss_pred CCCCEEEECCCCCC----CCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 16983997377786----5501688899887404763223557699
Q gi|254780195|r 345 YGVHGILVPGGFGK----RGSEGKIAAIKFARENKIPFLGICFGMQ 386 (544)
Q Consensus 345 ~~~dGIlVPGGFG~----RGieGkI~Ai~yARen~iP~LGIClGmQ 386 (544)
.+++||.||||-|. -.-+-.-..++||-+++.|..-+|-|=-
T Consensus 147 sdY~AVFiPGGHG~M~dLP~s~~l~~iL~~a~~~~k~v~alCHGPA 192 (288)
T PRK04155 147 SDYAAVFIPGGHGALIGIPESEDVKAALQWALDNDRFIITLCHGPA 192 (288)
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 8824899368975546788898999999999973998999817879
No 204
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.61 E-value=2 Score=23.60 Aligned_cols=67 Identities=24% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC-----CHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88888787367241677225656723-----4456621698399737778655016888998874047632235576
Q gi|254780195|r 313 ALRHSGVSNYTKVQLSWIDAETLEKE-----DPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 313 AL~hA~~~~~~kv~i~wIdse~le~~-----~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
.|.+-....+..|-+.--.++.+... ...+..+.+|=+++-||=|+ .+.|++.+...++|+|||=+|
T Consensus 4 ~l~~~l~~~g~~v~l~~~~a~~l~~~~~~~~~~~e~~~~~Dlii~iGGDGT-----~L~a~r~~~~~~iPilGiN~G 75 (272)
T PRK02231 4 NLFHWLMERGYQVLVEKEVGETLELSFNHLASLEEIGQRAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHCCCCCEEEEECCCHH-----HHHHHHHHHCCCCCEEEECCC
T ss_conf 999999978999999779987649986664798897017789999787589-----999999860059978965378
No 205
>PRK08017 short chain dehydrogenase; Provisional
Probab=79.44 E-value=2.8 Score=22.65 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.9
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.|-++||||- ||+|+.++ ..|-.+|++|...
T Consensus 1 M~K~vlITGas-sGIG~a~A-----~~la~~G~~V~~~ 32 (256)
T PRK08017 1 MQKSVLITGCS-SGIGLESA-----LELKRQGFRVLAG 32 (256)
T ss_pred CCCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 99789996587-68999999-----9999879999999
No 206
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=78.91 E-value=2.9 Score=22.50 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=36.8
Q ss_pred EEEEEEHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCE-EEECCCCCCCCCHHHHH--CCCCEEEECCCCCCCCCHHHHHH
Q ss_conf 7999952001481346-88888888887873672416-77225656723445662--16983997377786550168889
Q gi|254780195|r 292 VKVAIVGKYIHLKDAY-RSLIEALRHSGVSNYTKVQL-SWIDAETLEKEDPVKHF--YGVHGILVPGGFGKRGSEGKIAA 367 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY-~Si~EAL~hA~~~~~~kv~i-~wIdse~le~~~~~~~L--~~~dGIlVPGGFG~RGieGkI~A 367 (544)
-+||++ |.+ |+| .+..+++..+.-+.+.++.. .+.+...-+-......+ .+.|.|++.+. +.. -...
T Consensus 145 k~vail--~~~--~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~~~~i~~~~pd~v~~~~~-~~~----~~~~ 215 (362)
T cd06343 145 AKIAVL--YQN--DDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATT-PKF----AAQA 215 (362)
T ss_pred CEEEEE--CCC--CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC-CHH----HHHH
T ss_conf 738996--478--5777999999999999769968899945777788899999998549399999478-468----9999
Q ss_pred HHHHHCCCC
Q ss_conf 988740476
Q gi|254780195|r 368 IKFARENKI 376 (544)
Q Consensus 368 i~yARen~i 376 (544)
++=+|+.++
T Consensus 216 ~~q~~~~G~ 224 (362)
T cd06343 216 IRKAAELGW 224 (362)
T ss_pred HHHHHHCCC
T ss_conf 999997699
No 207
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=78.72 E-value=5.7 Score=20.40 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHCCC-CCEEEE--CCCCCCC--------CCHHHHHCCCCEEEECCCCCCCCC--HHHHHHHHHHHCC
Q ss_conf 88888888887873672-416772--2565672--------344566216983997377786550--1688899887404
Q gi|254780195|r 308 RSLIEALRHSGVSNYTK-VQLSWI--DAETLEK--------EDPVKHFYGVHGILVPGGFGKRGS--EGKIAAIKFAREN 374 (544)
Q Consensus 308 ~Si~EAL~hA~~~~~~k-v~i~wI--dse~le~--------~~~~~~L~~~dGIlVPGGFG~RGi--eGkI~Ai~yARen 374 (544)
....|.|..|....+.. .++.++ +...+.. +...+....+|-++||||++.+-. ..-+..++-+..+
T Consensus 15 ag~~evf~~An~~~~~~~f~v~~vs~~~~~V~~~~G~~i~~~~~~~~~~~~D~liV~Gg~~~~~~~~~~~~~~L~~~~~~ 94 (185)
T cd03136 15 ASAIEPLRAANRLAGRELYRWRVLSLDGAPVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGARRAVTPALLAWLRRAARR 94 (185)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEECCCCEEECCCCHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99999999988525998579999965998047379708966767001676789998788880214799999999999870
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 76322355769999
Q gi|254780195|r 375 KIPFLGICFGMQMA 388 (544)
Q Consensus 375 ~iP~LGIClGmQ~a 388 (544)
.....++|-|-.+.
T Consensus 95 g~~v~svctGa~~L 108 (185)
T cd03136 95 GVALGGIDTGAFLL 108 (185)
T ss_pred CCEEEEECHHHHHH
T ss_conf 99899864799999
No 208
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.69 E-value=4.8 Score=20.90 Aligned_cols=44 Identities=32% Similarity=0.349 Sum_probs=34.3
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHH-HCCCEEEEEEECCCCC
Q ss_conf 92399993750144444899999999999-6898288985445533
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQ-AHKYKVRVRKLDPYLN 45 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk-~~g~~v~~~K~DPYlN 45 (544)
|||-|.| ...=-|.||..+|.-++..|- .+|+||..+-+||=-|
T Consensus 1 ~~~iI~v-~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 1 MMKIIAV-ANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred CCEEEEE-EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9769999-85788851999999999999983899789997899941
No 209
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase; InterPro: IPR010159 This entry represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolase (3.5.1.14 from EC) is a homodimeric zinc-binding mammalian enzyme that catalyzes the hydrolysis of N-alpha-acylated amino acids except L-aspartic acid. , . These enzymes are listed as being members of MEROPS peptidase family S20A (clan MH).; GO: 0004046 aminoacylase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=78.57 E-value=1.9 Score=23.89 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHCC-CCCCCEEEEEEEEEEEECCCC
Q ss_conf 3068999999998749-776857999974675422566
Q gi|254780195|r 149 VMPFVEAIRQFGNEFS-HRGSKALYIHLTLMPYIRSSG 185 (544)
Q Consensus 149 s~pFlEAiRQl~~e~g-~~~~n~~fiHvtlvP~l~~~g 185 (544)
|+-||||||.|+. -| .+. -=-||+||||-=+..|
T Consensus 119 G~QyLEA~R~Lk~-~Gi~~~--~RTIHlsfVPDEEiGG 153 (433)
T TIGR01880 119 GVQYLEAVRNLKA-SGIFKF--KRTIHLSFVPDEEIGG 153 (433)
T ss_pred HHHHHHHHHHHHH-CCCCCC--CCEEEEEECCCCCCCC
T ss_conf 5899999999986-573478--8758998328622366
No 210
>pfam10113 Fibrillarin_2 Fibrillarin-like archaeal protein. Members of this family of proteins include archaeal fibrillarin homologs.
Probab=77.98 E-value=6 Score=20.25 Aligned_cols=93 Identities=20% Similarity=0.328 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCC---------------CHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCC
Q ss_conf 8400255641133228747754680---------------1258999999888577757740256460248989999707
Q gi|254780195|r 65 GGEADLDFGHYERFMGISTAKADNI---------------TAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQG 129 (544)
Q Consensus 65 G~EtDlDlG~YERFl~~~l~~~~ni---------------T~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~ 129 (544)
-.|+-|||-|+-||=-.++.++=.- .-++|-+..|+|||+.. ++--+||+.+
T Consensus 119 ~veVPlDlDHFG~yGpMRfPk~It~C~G~CY~~GPpf~gCPR~RIH~RLidkEke~~-------------~d~eeWikls 185 (505)
T pfam10113 119 NVEVPLDLDHFGRYGPMRFPKEITHCEGDCYLEGPPFKGCPRDRIHKRLIDKEREQL-------------EDFEEWIKLA 185 (505)
T ss_pred HCCCCCCHHHHCCCCCCCCCHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_conf 066775423203558766870441668432036999789956778999868777631-------------3488999763
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHH--HHHHHHHCCCCCCCEEEE
Q ss_conf 88987899972431222123068999--999998749776857999
Q gi|254780195|r 130 NEDADFVICEIGGTIGDIEVMPFVEA--IRQFGNEFSHRGSKALYI 173 (544)
Q Consensus 130 ~~~~Dv~ivEiGGTVGDIEs~pFlEA--iRQl~~e~g~~~~n~~fi 173 (544)
+. .-|-++|..| |+=-+.|.=|| +......+|++-+-.+||
T Consensus 186 Ss-VcvNv~~eQg--~e~HaApl~Eme~Va~~A~k~gkGvEaI~hi 228 (505)
T pfam10113 186 SS-VCVNVTEEQG--AEAHAAPLDEMKEVAETARKYGKGVEAIFHV 228 (505)
T ss_pred CE-EEEEEECCCC--CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 40-5797202467--7556788799999999999848783489971
No 211
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.87 E-value=6 Score=20.23 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1698399737778655016888998874-04763223557699999999875
Q gi|254780195|r 345 YGVHGILVPGGFGKRGSEGKIAAIKFAR-ENKIPFLGICFGMQMAVIEAARN 395 (544)
Q Consensus 345 ~~~dGIlVPGGFG~RGieGkI~Ai~yAR-en~iP~LGIClGmQ~avIEfARn 395 (544)
.+++||+.+.. -...|.+.|++-+- ..+|...|.-..-+ .+++-|+
T Consensus 182 pdi~~I~~~nd---~~a~ga~~Al~~ag~~~~i~vvg~D~~~~--~~~~i~~ 228 (271)
T cd06312 182 PDVDAVLTLGA---PSAAPAAKALKQAGLKGKVKLGGFDLSPA--TLQAIKA 228 (271)
T ss_pred CCCCEEEECCC---HHHHHHHHHHHHCCCCCCEEEEEECCCHH--HHHHHHC
T ss_conf 89888998896---78999999999669999859999889999--9999986
No 212
>PRK06483 short chain dehydrogenase; Provisional
Probab=77.23 E-value=3.2 Score=22.22 Aligned_cols=32 Identities=34% Similarity=0.341 Sum_probs=24.9
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.|-|+||||- ||+|+.++ ..|-..|.+|...
T Consensus 1 M~ktVlVTGas-~GIG~aiA-----~~la~~Ga~Vvi~ 32 (236)
T PRK06483 1 MSAPILITGAG-QRIGLALA-----KHLLAQGQPVIVS 32 (236)
T ss_pred CCCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 99879997899-88999999-----9999889989999
No 213
>pfam09825 BPL_N Biotin-protein ligase, N terminal. The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain.
Probab=77.20 E-value=4.3 Score=21.31 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=51.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCC---CCCCHHH--HHHHHHHHCC
Q ss_conf 0148134688888888887873672416772256567234456621698399737778---6550168--8899887404
Q gi|254780195|r 300 YIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFG---KRGSEGK--IAAIKFAREN 374 (544)
Q Consensus 300 Y~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG---~RGieGk--I~Ai~yARen 374 (544)
|...--+--||..+|.---..+.-...+..|++..|..+. | -.++.-+++|||-- -|-..|+ -+--+|.| +
T Consensus 6 YsG~G~t~~sv~h~l~sLr~~l~p~YaV~~v~~~~l~~eP-W--~~~~aLLV~PGGaDlpy~~~l~g~g~~~I~~fV~-~ 81 (364)
T pfam09825 6 YNGPGTTPESVKHCLESLRLLLEPYYAVSPVTASVLENEP-W--MSKTALLVFPGGADLPYCRDLNGPGNRKIRDFVR-Q 81 (364)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCC-C--CCCEEEEEECCCCCCHHHHHHCCCCCHHHHHHHH-C
T ss_conf 7689989899999999999974787268864688874496-3--1163699924886756777618611177999997-3
Q ss_pred CCCHHHHHHHHH
Q ss_conf 763223557699
Q gi|254780195|r 375 KIPFLGICFGMQ 386 (544)
Q Consensus 375 ~iP~LGIClGmQ 386 (544)
.=-|||+|-|--
T Consensus 82 GG~yLG~CAG~Y 93 (364)
T pfam09825 82 GGAYLGFCAGGY 93 (364)
T ss_pred CCEEEEEECCCC
T ss_conf 985899702334
No 214
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=77.14 E-value=2 Score=23.66 Aligned_cols=204 Identities=24% Similarity=0.276 Sum_probs=107.4
Q ss_pred CEEEEEEHHHCCCCHHHHHH--HHHHHHHHHHHCCCCCEEEECCCC-CCCCCHHHHHCCCCEEEECCCCC------CCCC
Q ss_conf 37999952001481346888--888888878736724167722565-67234456621698399737778------6550
Q gi|254780195|r 291 EVKVAIVGKYIHLKDAYRSL--IEALRHSGVSNYTKVQLSWIDAET-LEKEDPVKHFYGVHGILVPGGFG------KRGS 361 (544)
Q Consensus 291 ~V~IaiVGKY~~l~DaY~Si--~EAL~hA~~~~~~kv~i~wIdse~-le~~~~~~~L~~~dGIlVPGGFG------~RGi 361 (544)
+++||.+ |-++--.|=-. +-.|+.-+-..+.+++|.-|+-.+ +. ...+|=++.-||-- .|-.
T Consensus 3 eL~I~~l--ypdlmntYGD~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~-------~~~~Dl~~~GGgqD~eQ~i~t~d~ 73 (250)
T COG3442 3 ELTIGHL--YPDLMNTYGDNGNILVLRQRAEKRGIKVEIVEVSLTDTFP-------DDSYDLYFLGGGQDYEQEIATRDL 73 (250)
T ss_pred EEEEEEE--CHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEEECCCCCC-------CCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 6886300--2445630278874661457898669816999963478987-------444027995172078888875210
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCE
Q ss_conf 1688899887404763223557699999999875168--89997000356666412115011234653001565546740
Q gi|254780195|r 362 EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAG--IPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGAT 439 (544)
Q Consensus 362 eGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlg--l~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGT 439 (544)
--|-.+++-|-+++.|.|-||.|.|+. | +..|.-++.+.. -+++.-++. .+.+|. .
T Consensus 74 ~~k~~~l~~~i~~g~p~laiCgg~QlL---------G~yY~~a~G~ri~Gl--GiLd~~T~~----~~~~R~----I--- 131 (250)
T COG3442 74 LTKKEGLKDAIENGKPVLAICGGYQLL---------GQYYETASGTRIDGL--GILDHYTEN----PQTKRF----I--- 131 (250)
T ss_pred CCCCHHHHHHHHCCCCEEEECCCHHHC---------CCEEECCCCCEEECC--CCEEEEECC----CCCCCE----E---
T ss_conf 010377999986699589982555330---------403216898476132--211234126----666504----5---
Q ss_pred EEECCEEEEECCCCHHHHHHC-CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC-EEEEEEECCCCEEEEEECCC
Q ss_conf 231652578558706688637-9847660252333278899899978959999869998-68999838998499972487
Q gi|254780195|r 440 MRLGAYDVSLKEETLISRIYG-LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHA-LPEVVEYINHPWFIGVQYHP 517 (544)
Q Consensus 440 MRLG~~~~~l~~~S~~~~iYg-~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~-lvEiiEl~~HpffvgvQfHP 517 (544)
| ++.+ .++++....+ .-.=+|-|+-|--.+|+.. --|-++.|.--++. --|-+- +.=-+|+-||-
T Consensus 132 ---G--div~-~~~~~~e~~~et~~GFENH~GrT~L~~d~~----pLG~Vv~G~GNn~eD~~eG~~---ykn~~aTY~HG 198 (250)
T COG3442 132 ---G--DIVI-ENTLAGEEFGETLVGFENHGGRTYLGPDVK----PLGKVVYGYGNNGEDGTEGAH---YKNVIATYFHG 198 (250)
T ss_pred ---E--EEEE-ECCCCHHHHCCEEEEEECCCCCEECCCCCC----CCEEEEECCCCCCCCCCCCEE---EEEEEEEEECC
T ss_conf ---3--6886-214565773880462543788134189876----460078866777554664234---52047875117
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 732787698841589999999876
Q gi|254780195|r 518 ELKSRPLDPHPLFVSFIQATVLYS 541 (544)
Q Consensus 518 Ef~Srp~~phPLF~~fi~Aal~~~ 541 (544)
-..||- | -|-.-||+.|++.|
T Consensus 199 P~L~rN--p-~LAd~Ll~tAl~~k 219 (250)
T COG3442 199 PILSRN--P-ELADRLLTTALEKK 219 (250)
T ss_pred CCCCCC--H-HHHHHHHHHHHHHH
T ss_conf 544688--7-89999999999886
No 215
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=77.05 E-value=6.3 Score=20.07 Aligned_cols=123 Identities=23% Similarity=0.317 Sum_probs=64.4
Q ss_pred CEEEEEE--------HHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC----HHH--HHCCCCEEEECCCC
Q ss_conf 3799995--------200148134688888888887873672416772256567234----456--62169839973777
Q gi|254780195|r 291 EVKVAIV--------GKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKED----PVK--HFYGVHGILVPGGF 356 (544)
Q Consensus 291 ~V~IaiV--------GKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~----~~~--~L~~~dGIlVPGGF 356 (544)
..-+|+. ++|+++.+.+.+- +.|.=-.++.+-..+.++.+. +.+ .--+.||++|.||=
T Consensus 105 s~l~GF~~G~~Gl~~~~~~elt~~~i~~--------~rN~GGFd~lgs~r~ki~t~e~~~~~~~t~~~l~LdgLviiGGd 176 (557)
T PRK07085 105 SKLFGFIGGPLGLLNNKYIELTEEVIDE--------YRNTGGFDMIGSGRTKIETEEQKEACLQTVKKLKLDGLVIIGGD 176 (557)
T ss_pred CEEEEECCCHHHHCCCCEEEECHHHHHH--------HHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7799987770444069779948999998--------76288852430686545899999999999998599879997988
Q ss_pred CCCCCHHHHHHHHHHHCC--------------CC--CHHHHHHHHHHHHH---HHHHHCCCCCCCCHHHC----------
Q ss_conf 865501688899887404--------------76--32235576999999---99875168899970003----------
Q gi|254780195|r 357 GKRGSEGKIAAIKFAREN--------------KI--PFLGICFGMQMAVI---EAARNLAGIPNACSTEF---------- 407 (544)
Q Consensus 357 G~RGieGkI~Ai~yARen--------------~i--P~LGIClGmQ~avI---EfARnvlgl~dAnStEf---------- 407 (544)
++ ..+..++|--|+..+ ++ +++-+|+||..|+= |+.-|++ .||+|+.-
T Consensus 177 ~s-ntnAa~LAEyf~~~~~~t~VIGvPkTidgDLkn~~ie~sfGFdTa~k~yselIGNl~--~Da~Sa~KYwHFVrlMGR 253 (557)
T PRK07085 177 DS-NTNAAILAEYFAKHNCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNIS--RDALSAKKYWHFIKLMGR 253 (557)
T ss_pred CC-HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEEEECC
T ss_conf 72-163899999999829983799335214787776640455362236889999999999--875015760799998168
Q ss_pred ---------CCCCCCCEECCCHHCCC
Q ss_conf ---------56666412115011234
Q gi|254780195|r 408 ---------SEAGVPVIALMSEWMKG 424 (544)
Q Consensus 408 ---------~~~~~pvI~~l~e~~~~ 424 (544)
.-.++|-|.++.|....
T Consensus 254 sASHiaLECaLQThPNi~lI~EEv~~ 279 (557)
T PRK07085 254 SASHIALECALQTHPNICLISEEIAE 279 (557)
T ss_pred CCHHHHHHHHHHCCCCEEEEHHHHHH
T ss_conf 61078888875138878976799987
No 216
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=76.89 E-value=2.4 Score=23.08 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=36.4
Q ss_pred HCCCCEEEECCCCCC----CCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 216983997377786----550168889988740476322355769999
Q gi|254780195|r 344 FYGVHGILVPGGFGK----RGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 344 L~~~dGIlVPGGFG~----RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..++|+|++|||.|. +.-+--...++..-+++.|.-.||-|=...
T Consensus 88 ~~~ydai~~pGG~g~m~dl~~~~~l~~l~~~~~~~gk~vaaiCHGp~~L 136 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAAL 136 (221)
T ss_pred HHHCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 8788389989985458774416999999999997498599976307988
No 217
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.37 E-value=6.6 Score=19.94 Aligned_cols=63 Identities=13% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 24312221230689999999987497768579999746754225662003478999999997499876899923
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs 213 (544)
||=.+.+..|.||.-++.+=--+.-+. .+ +.+.+ ..+.+. ..=-+..+..|.+- ++|-|+.-.
T Consensus 2 Ig~~~~~~~~~pf~~~~~~g~e~~A~~-~G---~~~~v---~~~~~d--~~~q~~~i~~~i~~--~vd~Iii~p 64 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEE-DG---VEVIV---LDANGD--VARQAAQVEDLIAQ--KVDGIILWP 64 (275)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-CC---CEEEE---ECCCCC--HHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf 789778888986999999999999997-69---98999---779999--99999999999975--999999967
No 218
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.17 E-value=6.7 Score=19.91 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 4489999999999968982889854
Q gi|254780195|r 16 GKGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 16 GKGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
|=|.+--|..++|+++|.+|+..--
T Consensus 16 GlG~sG~s~a~~L~~~G~~V~~~D~ 40 (457)
T PRK01390 16 GLGGSGLATARALKAGGAEVIAWDD 40 (457)
T ss_pred EECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 4369999999999978997999939
No 219
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=75.95 E-value=2.4 Score=23.15 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=74.2
Q ss_pred CEEEEEEH--------HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHH----H--HHCCCCEEEECCCC
Q ss_conf 37999952--------0014813468888888888787367241677225656723445----6--62169839973777
Q gi|254780195|r 291 EVKVAIVG--------KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPV----K--HFYGVHGILVPGGF 356 (544)
Q Consensus 291 ~V~IaiVG--------KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~----~--~L~~~dGIlVPGGF 356 (544)
..-+|+.| ||+++.|.+++- +.|.=-.++.|=....++.+.-. + .--+.||++|.||=
T Consensus 105 s~l~GF~~Gp~Gl~~~~~~eit~~~i~~--------yrN~GGfdmi~sgr~ki~t~eq~~~~~~~~~~l~LdgLVIiGGd 176 (550)
T cd00765 105 STLYGFKGGPAGILKCDYIELNAEYIQP--------YRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGD 176 (550)
T ss_pred CEEEEECCCCHHHCCCCEEEECHHHHHH--------HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7799975784232069679808999987--------65188851036885624899999999999998599879996898
Q ss_pred CCCCCHHHHHHHHHHHCCCC-----------------CHHHHHHHHHHHHH---HHHHHCCCCCCCCHHHC---------
Q ss_conf 86550168889988740476-----------------32235576999999---99875168899970003---------
Q gi|254780195|r 357 GKRGSEGKIAAIKFARENKI-----------------PFLGICFGMQMAVI---EAARNLAGIPNACSTEF--------- 407 (544)
Q Consensus 357 G~RGieGkI~Ai~yARen~i-----------------P~LGIClGmQ~avI---EfARnvlgl~dAnStEf--------- 407 (544)
++ ..+..++|--|+.. +. |+.-+|+||-.|+= |..-|++ .||+|+.-
T Consensus 177 dS-nTnaa~LAEyf~~~-~~~t~VIGvPkTIdgDLkn~~IE~sfGFDTa~k~yselIgNl~--~Da~Sa~KYwHFIklMG 252 (550)
T cd00765 177 DS-NTNAALLAENFRSK-GLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVM--RDARSTGKYWHFVKLMG 252 (550)
T ss_pred CC-HHHHHHHHHHHHHC-CCCCEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEEEEC
T ss_conf 73-48799999999964-9995599345364488778862554250457889999999999--76500476079999816
Q ss_pred ----------CCCCCCCEECCCHHCCC
Q ss_conf ----------56666412115011234
Q gi|254780195|r 408 ----------SEAGVPVIALMSEWMKG 424 (544)
Q Consensus 408 ----------~~~~~pvI~~l~e~~~~ 424 (544)
.=.++|=|.++.|....
T Consensus 253 RsaSHiaLEcaLQThPNi~lI~EEv~~ 279 (550)
T cd00765 253 RSASHIALECALKTHPNICIISEEVSA 279 (550)
T ss_pred CCCCHHHHHHHHHCCCCEEEEHHHHHH
T ss_conf 861078887766228989986799886
No 220
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.83 E-value=1.3 Score=25.04 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=10.5
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 898789997243122212306899999999
Q gi|254780195|r 131 EDADFVICEIGGTIGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 131 ~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (544)
+++|++|+ |||- --||.|+|++.
T Consensus 32 d~~Dlviv-iGGD------GT~L~a~~~~~ 54 (259)
T PRK00561 32 DGADYLFV-LGGD------GFFVSTAANYN 54 (259)
T ss_pred CCCCEEEE-ECCH------HHHHHHHHHHC
T ss_conf 89999999-8971------99999999855
No 221
>PRK06482 short chain dehydrogenase; Provisional
Probab=75.77 E-value=4 Score=21.54 Aligned_cols=33 Identities=36% Similarity=0.499 Sum_probs=26.1
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 923999937501444448999999999996898288985
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|+|-+||||+- ||+|+.++ ..|-++|.+|...-
T Consensus 1 M~Kv~lITGaS-sGiG~ala-----~~l~~~G~~Vi~t~ 33 (276)
T PRK06482 1 MTKTWFITGAS-SGFGRGLT-----ERLLARGDRVAATV 33 (276)
T ss_pred CCCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEEE
T ss_conf 99789991586-59999999-----99998899899997
No 222
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=75.69 E-value=5.4 Score=20.59 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=28.8
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 99937501444448999999999996898288985
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|-.|| +||=||-.+|-.+-..|...||++-.+=
T Consensus 22 lWlTG--LSGsGKsTiA~Al~~~L~~~G~~~~~LD 54 (187)
T TIGR00455 22 LWLTG--LSGSGKSTIANALEKKLEKKGYRVYVLD 54 (187)
T ss_pred EEEEC--CCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 85116--8856357999999999996697499975
No 223
>PRK05693 short chain dehydrogenase; Provisional
Probab=75.63 E-value=3.6 Score=21.85 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=24.9
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 2399993750144444899999999999689828898
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
||-++|||+ -||+|+. +...|..+|++|...
T Consensus 1 MKvvlITGa-ssGIG~a-----lA~~la~~G~~V~~~ 31 (274)
T PRK05693 1 MPVVLITGC-SSGIGRA-----LADAFKAAGYEVWAT 31 (274)
T ss_pred CCEEEECCC-CCHHHHH-----HHHHHHHCCCEEEEE
T ss_conf 998999488-8589999-----999999879999999
No 224
>pfam00463 ICL Isocitrate lyase family.
Probab=75.48 E-value=4.3 Score=21.26 Aligned_cols=214 Identities=17% Similarity=0.159 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEE-EEEEECCCCCCHH---HHHHHHHHHHHH-------CCCCCCEEEEECCCCCCHH
Q ss_conf 8999999998749776857999974-6754225662003---478999999997-------4998768999238758999
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLT-LMPYIRSSGELKT---KPTQHSVKELQA-------LGVHPDILLIRADRDIPEM 220 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvt-lvP~l~~~gE~KT---KPTQhSVk~Lrs-------~GIqPDiivcRse~~l~~~ 220 (544)
-++-.++|. |-| .+-||+- -+|--+-.|-+-- =|||.-++.|.. +|. |++|||||+-.--.-
T Consensus 166 v~~L~K~fI-EaG-----AagIHiEDQ~~~~KKCGH~~GKVlVPt~e~I~rL~AaRla~DimGv-~~iiVARTDs~~A~L 238 (526)
T pfam00463 166 VFKLTKLFI-ERG-----AAGIHIEDQAPGTKKCGHMAGKVLVPIQEHINRLVAIRAQADIMGS-DLLLVARTDAEAATL 238 (526)
T ss_pred HHHHHHHHH-HHC-----CCEEEHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCC
T ss_conf 999999999-717-----6523224205666653678881757689999999999999987099-844898413333566
Q ss_pred HHHHHHHHCCCC---HHHEEE--CCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHCCCCCCEEE
Q ss_conf 999998641988---677240--38986202668988764948899998387888862047899999-874184343799
Q gi|254780195|r 221 ERRKISLFCNVP---MSAVIP--ALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFC-DRTLSLKNEVKV 294 (544)
Q Consensus 221 ~k~KIalfc~V~---~~~Vi~--~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~-~~~~~~~~~V~I 294 (544)
+ -++++ ..-|.. .|++.+.+++-...+.+|....-+..+--+-.....|..+.+.+ +.+.+..-.=+-
T Consensus 239 i------ts~iD~rDh~fi~G~tnp~~~~~~~~~~~~~~~g~~g~~~~~~e~~W~~~a~l~~f~Eav~~~i~~~~~~~~~ 312 (526)
T pfam00463 239 I------TSTIDPRDHYFILGATNPDLEPLADLMSQAEAAGKNGAELQAIEDEWLRKAGLKLFHEAVVDEIERGNLSNKK 312 (526)
T ss_pred C------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 1------5778855464313677888778899999998557740778889888887414421668999988632454047
Q ss_pred EEEHHHCC--CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEE-EECCCCCCCCCHHHHHHHHHH
Q ss_conf 99520014--813468888888888787367241677225656723445662169839-973777865501688899887
Q gi|254780195|r 295 AIVGKYIH--LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGI-LVPGGFGKRGSEGKIAAIKFA 371 (544)
Q Consensus 295 aiVGKY~~--l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGI-lVPGGFG~RGieGkI~Ai~yA 371 (544)
..+-+|.. -++++.|+.|+=..|--..+..+-.+|=-.. .-+|. -+-||. ...|+--+..+.||
T Consensus 313 ~~~~~~~~~~~~~~~~s~~e~r~la~~~~g~~~~fdwd~pR------------t~eG~y~~~~g~-~~aI~R~~a~ApyA 379 (526)
T pfam00463 313 ELIKKFTHKVKPLSNTSNREARAIAKELLGKDIFFDWELPR------------TREGYYRYQGGT-QCAINRGRAYAPYA 379 (526)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------------CCCCCEEECCCH-HHHHHHHHHCCCCC
T ss_conf 88887765406655445788999988743776422456776------------778703653884-99999988506414
Q ss_pred ----HCCCCCHHHHHHHHHHHHHH
Q ss_conf ----40476322355769999999
Q gi|254780195|r 372 ----RENKIPFLGICFGMQMAVIE 391 (544)
Q Consensus 372 ----Ren~iP~LGIClGmQ~avIE 391 (544)
-|-+.|=++.+..|--+|=+
T Consensus 380 DLlW~ET~~Pd~~qak~Fa~~I~~ 403 (526)
T pfam00463 380 DLIWMESKLPDYEQAKEFAEGVHA 403 (526)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 532321589889999999999998
No 225
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=74.64 E-value=2.3 Score=23.25 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=32.7
Q ss_pred HCCCCEEEECCCCCC----CCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 216983997377786----5501688899887404763223557699
Q gi|254780195|r 344 FYGVHGILVPGGFGK----RGSEGKIAAIKFARENKIPFLGICFGMQ 386 (544)
Q Consensus 344 L~~~dGIlVPGGFG~----RGieGkI~Ai~yARen~iP~LGIClGmQ 386 (544)
..++|+|.+|||.|. -.-+---..++.+-+++.|.-.+|-|==
T Consensus 92 ~~~YdaVf~pGGhG~m~Dl~~~~~l~~ll~~~~~~gk~vaaVCHGpa 138 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA 138 (231)
T ss_pred HHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 87825999889885303242399999999999975997999806889
No 226
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=73.99 E-value=5.1 Score=20.74 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=9.3
Q ss_pred HCCCCCCCCEEECC
Q ss_conf 57775774025646
Q gi|254780195|r 103 RRGDYLGTTVQVIP 116 (544)
Q Consensus 103 R~G~ylG~TVQvIP 116 (544)
++|.-+|+.|++|.
T Consensus 33 a~GGi~Gr~ielv~ 46 (336)
T cd06326 33 AAGGVNGRKIELVT 46 (336)
T ss_pred HHCCCCCEEEEEEE
T ss_conf 60997987989999
No 227
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.96 E-value=3 Score=22.43 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=4.2
Q ss_pred CCCHHHHHHH
Q ss_conf 7632235576
Q gi|254780195|r 375 KIPFLGICFG 384 (544)
Q Consensus 375 ~iP~LGIClG 384 (544)
++|+|||=+|
T Consensus 61 ~vPilGIN~G 70 (265)
T PRK04885 61 KVRFVGVHTG 70 (265)
T ss_pred CCCEEEEECC
T ss_conf 9758987358
No 228
>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional
Probab=73.50 E-value=3 Score=22.36 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.0
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99983899849997248773278769884158999999987
Q gi|254780195|r 500 EVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY 540 (544)
Q Consensus 500 EiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~ 540 (544)
--||-++||||=----|||+...-.-+-|=|.+||..-++.
T Consensus 105 GRIEn~~HpF~GLDFvHtELs~~~GW~~P~FAaFVSSIIE~ 145 (191)
T PRK05417 105 GRIENKDHPFYGLDFVHTELSQEQGWSAPGFAAFVSSIIES 145 (191)
T ss_pred EEECCCCCCCCCCCEECHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 32116788734633101100233588873088899999866
No 229
>PRK07413 hypothetical protein; Validated
Probab=73.43 E-value=5.3 Score=20.60 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=24.8
Q ss_pred EECCCCHHHHHHHHHHHHHHCC--------CEEEEEEEC
Q ss_conf 0144444899999999999689--------828898544
Q gi|254780195|r 11 VVSSLGKGVAAASLGALLQAHK--------YKVRVRKLD 41 (544)
Q Consensus 11 V~SglGKGi~aaSig~lLk~~g--------~~v~~~K~D 41 (544)
|.-|=|||=++|++|..|++.| .||.++.|=
T Consensus 24 VYTGnGKGKTTAAlGlalRA~G~Gl~~~~~~rV~vvQFi 62 (382)
T PRK07413 24 VYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFL 62 (382)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE
T ss_conf 976899778999999999973488765678659999947
No 230
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=73.31 E-value=7.8 Score=19.42 Aligned_cols=143 Identities=25% Similarity=0.358 Sum_probs=79.1
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99937501444448999999999996898288985445533488888864435078727984002556411332287477
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTA 84 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~ 84 (544)
|=+|| +-|.||-....-+++-|..+|++|..+-+||- ||+--|-. ||+-=|+-+....
T Consensus 54 iGITG--~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGGsi------------LGDRiRM~~~~~~ 111 (323)
T COG1703 54 IGITG--VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGGSI------------LGDRIRMQRLAVD 111 (323)
T ss_pred EEECC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC--------CCCCCCCC------------CCCHHHHHHHCCC
T ss_conf 87317--99886688999999999977967899998899--------99878530------------1207667764469
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHC-CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 54680125899999988857775774025646024898999970-78898789997243122212306899999999874
Q gi|254780195|r 85 KADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQ-GNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEF 163 (544)
Q Consensus 85 ~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~-~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~ 163 (544)
..-.|-+ += ...+||. ++.+.-+-|+. -+-++|++||| |||==.|-. ++.++
T Consensus 112 ~~vFiRs------~~----srG~lGG-------lS~at~~~i~~ldAaG~DvIIVE---TVGvGQsev---~I~~~---- 164 (323)
T COG1703 112 PGVFIRS------SP----SRGTLGG-------LSRATREAIKLLDAAGYDVIIVE---TVGVGQSEV---DIANM---- 164 (323)
T ss_pred CCEEEEE------CC----CCCCCHH-------HHHHHHHHHHHHHHCCCCEEEEE---ECCCCCCHH---HHHHH----
T ss_conf 9817842------68----7765101-------66889999999986189889998---147884155---77652----
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 9776857999974675422566200347899999999749987689992
Q gi|254780195|r 164 SHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIR 212 (544)
Q Consensus 164 g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcR 212 (544)
.+ +|+-|+ +...|. +.|-==+-++++| |+++.-
T Consensus 165 ---aD--t~~~v~----~pg~GD----~~Q~iK~GimEia---Di~vIN 197 (323)
T COG1703 165 ---AD--TFLVVM----IPGAGD----DLQGIKAGIMEIA---DIIVIN 197 (323)
T ss_pred ---CC--EEEEEE----CCCCCC----HHHHHHHHHHHHH---HEEEEE
T ss_conf ---16--689996----578882----7888874146540---335672
No 231
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=73.17 E-value=7.8 Score=19.39 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHCCCC-CEEEECCCC--C--------CCCCHHHHHCCCCEEEECCCCCCCCC--HHHHHHHHHHHC
Q ss_conf 6888888888878736724-167722565--6--------72344566216983997377786550--168889988740
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKV-QLSWIDAET--L--------EKEDPVKHFYGVHGILVPGGFGKRGS--EGKIAAIKFARE 373 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv-~i~wIdse~--l--------e~~~~~~~L~~~dGIlVPGGFG~RGi--eGkI~Ai~yARe 373 (544)
+-+..|.|..|-...+..+ +..++..+. + ..+.....+..+|-++||||.+.+-. +..+..++-+..
T Consensus 23 ~a~~~evf~~An~~~g~~~y~~~~~S~dg~~V~ss~G~~v~~d~~~~~~~~~D~lvV~gg~~~~~~~~~~l~~wLr~~~~ 102 (320)
T PRK09393 23 FGCAVEIFGLPRPELGVDWYRFAVCAVEPGPLRAAGGITVAADGGLELLDRADTIVIPGWRDPDEPVPEPLLKALRAAHA 102 (320)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCEEEECCCCHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 30699998630444299866999993799805647991796787765657688899878777244699899999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4763223557699999999875168899
Q gi|254780195|r 374 NKIPFLGICFGMQMAVIEAARNLAGIPN 401 (544)
Q Consensus 374 n~iP~LGIClGmQ~avIEfARnvlgl~d 401 (544)
++...-|+|-|--+. | ..|+-|
T Consensus 103 ~g~~l~~vctGaf~L----A--~aGLLd 124 (320)
T PRK09393 103 RGARLCSICSGVFVL----A--AAGLLD 124 (320)
T ss_pred CCCEEEEECHHHHHH----H--HCCCCC
T ss_conf 599899982999999----9--738878
No 232
>PRK00208 thiG thiazole synthase; Reviewed
Probab=72.79 E-value=8 Score=19.34 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=51.5
Q ss_pred EHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 520014813468888888888787367241677225656723445662169839973777865501688899887404
Q gi|254780195|r 297 VGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAREN 374 (544)
Q Consensus 297 VGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen 374 (544)
-|||... .-..+|+.-+|.+ =+-|.+..++.++-..++.++.++.-.-.+.|---|-|-.|-.|..++.|||-
T Consensus 17 Tgky~s~----~~~~~ai~aSg~e-ivTVAlRR~~~~~~~~~~~l~~i~~~~~~lLPNTAGc~ta~EAVr~A~laRE~ 89 (256)
T PRK00208 17 TGKYPSP----EVMQEAIEASGAE-IVTVALRRVNLGDPGGDNLLDLLDPLGVTLLPNTAGCRTAEEAVRTARLAREA 89 (256)
T ss_pred CCCCCCH----HHHHHHHHHHCCC-EEEEEEEEECCCCCCCHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4899999----9999999996897-79999864247789850588874315856766640326799999999999998
No 233
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=72.44 E-value=8.1 Score=19.28 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=29.1
Q ss_pred CCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 437999952001481346888888888878736724167722565672
Q gi|254780195|r 290 NEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEK 337 (544)
Q Consensus 290 ~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~ 337 (544)
..-+||+++-.... .....-.+++..|....+.++...|+-......
T Consensus 119 G~~~I~~i~~~~~~-~~~~~R~~Gf~~al~~~gl~~~~~~~~~~~~~~ 165 (268)
T cd06271 119 GHRRIALLNPPEDL-TFAQHRRAGYRRALAEAGLPLDPALIVSGDMTE 165 (268)
T ss_pred CCCEEEECCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH
T ss_conf 98748754887546-079999999999999839997711365068757
No 234
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.44 E-value=8.1 Score=19.28 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=9.2
Q ss_pred HHHHHHHCCCCCCEEEEE
Q ss_conf 999999749987689992
Q gi|254780195|r 195 SVKELQALGVHPDILLIR 212 (544)
Q Consensus 195 SVk~Lrs~GIqPDiivcR 212 (544)
-|..|.+-| +|.|++-
T Consensus 49 ~Ie~~I~qg--vD~Iii~ 64 (303)
T cd01539 49 QIDTALAKG--VDLLAVN 64 (303)
T ss_pred HHHHHHHCC--CCEEEEE
T ss_conf 999999759--9999994
No 235
>PRK06924 short chain dehydrogenase; Provisional
Probab=72.33 E-value=5 Score=20.80 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=22.9
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 2399993750144444899999999999689828898
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
||.++||||- ||+|+.++- .|-.+|.+|...
T Consensus 1 MK~alITGas-~GIG~aiA~-----~la~~G~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-KGLGEAIAT-----QLLEKGTSVISI 31 (251)
T ss_pred CCEEEEECCC-CHHHHHHHH-----HHHHCCCEEEEE
T ss_conf 9999992987-499999999-----999879999999
No 236
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=72.21 E-value=8.2 Score=19.24 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=34.7
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 9239999375014444489999999999968982889854455
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
|.+||.+.| +-|-||-..+..+...|+.+|++|...+.-.+
T Consensus 2 ~g~fI~iEG--iDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~ 42 (208)
T COG0125 2 KGMFIVIEG--IDGAGKTTQAELLKERLEERGIKVVLTREPGG 42 (208)
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 962999978--88898899999999999982980799868999
No 237
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=71.58 E-value=8.5 Score=19.15 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923875899999999864198
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNV 231 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V 231 (544)
|=-|+.|| | .++.++.. ..+.--|--...-.+|.|-++ .|+|++|+. ....-+.+|-++.|
T Consensus 64 Fe~A~~~L----G---g~~i~l~~------~~s~~~kGEs~~Dt~~~Ls~~---~D~iviR~~---~~~~~~~~a~~~~v 124 (331)
T PRK02102 64 FEVAAIDL----G---AHVTYLGP------NDIQLGKKESMEDTARVLGRM---YDGIEYRGF---SQEIVEELAKYSGV 124 (331)
T ss_pred HHHHHHHC----C---CEEEECCC------CCCCCCCCCCHHHHHHHHHHH---CCEEEEECC---CHHHHHHHHHHCCC
T ss_conf 99999985----9---90995787------556377898989999999975---167899627---72899999974798
Q ss_pred CHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHH
Q ss_conf 86772403898620266898876494889999838788886204789999987418434379999520014813468888
Q gi|254780195|r 232 PMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLI 311 (544)
Q Consensus 232 ~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~ 311 (544)
| ||++-+- . +=| .--|.++-.+.++..+. +.++|++||. ..-++.
T Consensus 125 P---VIN~~~~--~-~HP----------------------tQ~L~Dl~Ti~e~~g~l-~gl~i~~vGD------~~nnVa 169 (331)
T PRK02102 125 P---VWNGLTD--E-WHP----------------------TQMLADFMTMKEHFGPL-KGLKLAYLGD------GRNNMA 169 (331)
T ss_pred C---EECCCCC--C-CCH----------------------HHHHHHHHHHHHHHCCC-CCCEEEEECC------CCCCHH
T ss_conf 6---4548887--6-487----------------------99999999999983875-6773899788------764246
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 888888787367241677225656
Q gi|254780195|r 312 EALRHSGVSNYTKVQLSWIDAETL 335 (544)
Q Consensus 312 EAL~hA~~~~~~kv~i~wIdse~l 335 (544)
.|+.+++...+.+ +..+..+.+
T Consensus 170 ~S~~~~~~~lG~~--v~~~~P~~~ 191 (331)
T PRK02102 170 NSLLVGGAKLGMD--VRICAPKSL 191 (331)
T ss_pred HHHHHHHHHCCCE--EEEECCCCC
T ss_conf 6899999855985--999758644
No 238
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=71.36 E-value=5.4 Score=20.56 Aligned_cols=177 Identities=20% Similarity=0.314 Sum_probs=102.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 39999375014444489999999999968982889854455334888888644350787279840025564113322874
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
+-|-+-| =-|+||-.+++-+..-|-.+|.||..+-+||=- |+
T Consensus 32 ~~IAiYG--KGGIGKSTts~NlsAAlA~~GkkVm~IGCDPKa--DS---------------------------------- 73 (329)
T cd02033 32 QIIAIYG--KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS--DT---------------------------------- 73 (329)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC--CH----------------------------------
T ss_conf 4999976--884356168899999999779969997888846--03----------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCC--------CCCCCCHHHH
Q ss_conf 77546801258999999888577757740256460248989999707889878999724312--------2212306899
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTI--------GDIEVMPFVE 154 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTV--------GDIEs~pFlE 154 (544)
..++..|+--.+|++--|+-++-+..+++- +-+.. ...|.-+|.||-- |-|.+.-+||
T Consensus 74 ---TrlLlgG~~~~TVLd~~~~~~~~~e~v~~~--------dv~~~---g~Gv~CvEsGGPEPGvGCAGRGIItai~lLe 139 (329)
T cd02033 74 ---TSLLFGGKACPTIIETSAKKKLAGEEVQIG--------DVCFK---RDGVFAMELGGPEVGRGCGGRGIIHGFELLE 139 (329)
T ss_pred ---HHHCCCCCCCCHHHHHHHHCCCCCCCCCHH--------HEEEC---CCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf ---341058988840999998728864434250--------17862---5998898667999987678873013667877
Q ss_pred HHHHHHHHCCCCCCCEEEEEE-----------------EEEEEECCCCCCHHHHH----HHHHHHHHHC-C-CCCCEEEE
Q ss_conf 999999874977685799997-----------------46754225662003478----9999999974-9-98768999
Q gi|254780195|r 155 AIRQFGNEFSHRGSKALYIHL-----------------TLMPYIRSSGELKTKPT----QHSVKELQAL-G-VHPDILLI 211 (544)
Q Consensus 155 AiRQl~~e~g~~~~n~~fiHv-----------------tlvP~l~~~gE~KTKPT----QhSVk~Lrs~-G-IqPDiivc 211 (544)
-+.-. +.. -++.|-.| .=-.|+-++||+-.==. -.+|+..+.. | ..--=|||
T Consensus 140 ~lg~~--~~d---~D~V~yDVLGDVVCGGFAmPiR~g~A~evyIVtSgE~MalyAANNI~~~i~~~a~~gg~vrl~GlI~ 214 (329)
T cd02033 140 KLGFH--DWD---FDYVLLDFLGDVVCGGFGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVI 214 (329)
T ss_pred HCCCC--CCC---CCEEEEECCCCEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 63775--258---9999992245356646335335687628999967808899988789999999986389710115986
Q ss_pred ECCCCCCHHHHHHHHHHCCCCHHHEEE
Q ss_conf 238758999999998641988677240
Q gi|254780195|r 212 RADRDIPEMERRKISLFCNVPMSAVIP 238 (544)
Q Consensus 212 Rse~~l~~~~k~KIalfc~V~~~~Vi~ 238 (544)
-+...-.+ .++.|--|+.+.=+.|.
T Consensus 215 N~~~~~~e--~e~fa~~~g~~~l~~vP 239 (329)
T cd02033 215 NKDDGTGE--AQAFAAHAGIPILAAIP 239 (329)
T ss_pred ECCCCCHH--HHHHHHHCCCCEEEECC
T ss_conf 06887249--99999971995799637
No 239
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.22 E-value=5.8 Score=20.36 Aligned_cols=78 Identities=28% Similarity=0.312 Sum_probs=39.7
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---CC--CHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf 799995200148134688888888887873672416772256567---23--4456621698399737778655016888
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLE---KE--DPVKHFYGVHGILVPGGFGKRGSEGKIA 366 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le---~~--~~~~~L~~~dGIlVPGGFG~RGieGkI~ 366 (544)
.+||||.+- +-+.|-....|-.. .+..+.++ ++|++.-. .. +..+ + ++|-+++-||=|+ .+.
T Consensus 1 MKi~iv~~~-~~~~a~~~a~~l~~----~L~~~~~v-~~d~~~a~~l~~~~~~~~e-~-~~Dlvi~iGGDGT-----lLr 67 (272)
T PRK01185 1 MKVAFVIRK-DCKRCANIARSIIS----LLPSDWEI-IYDKEAAKFLKKPGLDINE-I-SADIIIVIGGDGT-----VLR 67 (272)
T ss_pred CEEEEEEEC-CCHHHHHHHHHHHH----HHHCCCEE-EEEHHHHHHCCCCCCCCCC-C-CCCEEEEECCCHH-----HHH
T ss_conf 989999978-99899999999999----99669919-9856888870999998556-8-9889999778399-----999
Q ss_pred HHHHHHCCCCCHHHHHHHH
Q ss_conf 9988740476322355769
Q gi|254780195|r 367 AIKFARENKIPFLGICFGM 385 (544)
Q Consensus 367 Ai~yARen~iP~LGIClGm 385 (544)
|++++ +.|+|||=+|-
T Consensus 68 ~~~~~---~~PilGIN~G~ 83 (272)
T PRK01185 68 TLQFA---KGPVLGINMGG 83 (272)
T ss_pred HHHHC---CCCEEEECCCC
T ss_conf 99877---99999981785
No 240
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=71.16 E-value=8.7 Score=19.08 Aligned_cols=191 Identities=16% Similarity=0.242 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923875899999999864198
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNV 231 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V 231 (544)
|.+++++.-+..| .|+-|. |-.+.|++.+=|+- .++|. ..+||+|+.=+.-. ....++.. .++
T Consensus 20 f~~~L~~~G~~~g---~nv~~~------~~na~gd~~~l~~i--a~~l~--~~~~DlIva~gTpa-aqa~~~~~---~~i 82 (281)
T cd06325 20 FKDGLKEAGYKEG---KNVKID------YQNAQGDQSNLPTI--ARKFV--ADKPDLIVAIATPA-AQAAANAT---KDI 82 (281)
T ss_pred HHHHHHHCCCCCC---CCEEEE------EEECCCCHHHHHHH--HHHHH--HCCCCEEEECCHHH-HHHHHHCC---CCC
T ss_conf 9999996497679---837999------96079999999999--99998--54999999877099-99999627---999
Q ss_pred CHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCC------CCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCH
Q ss_conf 867724038986202668988764948899998387888------86204789999987418434379999520014813
Q gi|254780195|r 232 PMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENV------SLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKD 305 (544)
Q Consensus 232 ~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~------~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~D 305 (544)
|. ||.+..- |. ..|+.+ -+.-+.. .......+.++..++. |. --+||++ |.....
T Consensus 83 PI--VF~~V~d------Pv---~aglv~----s~~~pg~NvTGvs~~~~~~~~l~l~~~l~-P~-~k~igvl--yn~~e~ 143 (281)
T cd06325 83 PI--VFTAVTD------PV---GAGLVK----SLEKPGGNVTGVSDLVPVETQLELLKKLL-PD-AKTVGVL--YNPSEA 143 (281)
T ss_pred CE--EEEECCC------HH---HCCCCC----CCCCCCCCEEEEECCCCHHHHHHHHHHHC-CC-CCEEEEE--ECCCCC
T ss_conf 98--9995168------66---627543----56789995799878747899999999858-89-8589999--579986
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCC-CCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 4688888888887873672416772256-567234456621698399737778655016888998874047632235
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAE-TLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse-~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGI 381 (544)
......+.++.++-..+.++...-+.+. +++. -......+.|++++|.-.-.- ...=..++.|+++++|.++.
T Consensus 144 ns~~~~~~~~~~a~~~Gi~v~~~~v~~~~ei~~-a~~~l~~~~Dal~~~~d~~v~--s~~~~i~~~a~~~~iPv~~~ 217 (281)
T cd06325 144 NSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQ-AAQSLAGKVDAIYVPTDNTVA--SAMEAVVKVANEAKIPVIAS 217 (281)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH-HHHHHHHCCCEEEEECCCHHH--HHHHHHHHHHHHCCCCEEEC
T ss_conf 569999999999997698899994598889999-999756258999991881277--79999999998749988936
No 241
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=70.70 E-value=8.6 Score=19.11 Aligned_cols=116 Identities=29% Similarity=0.381 Sum_probs=74.2
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCC-----CCCCCCCCH
Q ss_conf 923999937501444448999999999996898288985445533488888864435078727984-----002556411
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGG-----EADLDFGHY 75 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~-----EtDlDlG~Y 75 (544)
|+.=||||| .-|.||-....-|.-.|+..||+|.-+= -| | |.++|- =.|||-|.=
T Consensus 4 ~~mki~ITG--~PGvGKtTl~~ki~e~L~~~g~kvgGf~------------t~----E--VR~gGkR~GF~Ivdl~tg~~ 63 (179)
T COG1618 4 MAMKIFITG--RPGVGKTTLVLKIAEKLREKGYKVGGFI------------TP----E--VREGGKRIGFKIVDLATGEE 63 (179)
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEE------------EE----E--EECCCEEEEEEEEECCCCCE
T ss_conf 545999867--9984589999999999985596651398------------31----1--42088275159998147955
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHH-HHHHHHCCCCCCCEEEEECCCCCCCCC--CCHH
Q ss_conf 3322874775468012589999998885777577402564602489-899997078898789997243122212--3068
Q gi|254780195|r 76 ERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNE-IKEFITQGNEDADFVICEIGGTIGDIE--VMPF 152 (544)
Q Consensus 76 ERFl~~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTde-Ik~~I~~~~~~~Dv~ivEiGGTVGDIE--s~pF 152 (544)
..|-.++.++ -|-|.|. |---.-++ ...-+.++-+.+|++||. -||-+| |.-|
T Consensus 64 ~~la~~~~~~----------------~rvGkY~-----V~v~~le~i~~~al~rA~~~aDvIIID---EIGpMElks~~f 119 (179)
T COG1618 64 GILARVGFSR----------------PRVGKYG-----VNVEGLEEIAIPALRRALEEADVIIID---EIGPMELKSKKF 119 (179)
T ss_pred EEEEECCCCC----------------CCCCEEE-----EEHHHHHHHHHHHHHHHHHCCCEEEEE---CCCCHHHCCHHH
T ss_conf 7988847887----------------6210478-----627888998689999886349989994---336330200889
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780195|r 153 VEAIRQFG 160 (544)
Q Consensus 153 lEAiRQl~ 160 (544)
.+|+++.-
T Consensus 120 ~~~ve~vl 127 (179)
T COG1618 120 REAVEEVL 127 (179)
T ss_pred HHHHHHHH
T ss_conf 99999996
No 242
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=70.65 E-value=8.4 Score=19.19 Aligned_cols=73 Identities=25% Similarity=0.290 Sum_probs=49.9
Q ss_pred EHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 520014813468888888888787367241677225656723445662169839973777865501688899887404
Q gi|254780195|r 297 VGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAREN 374 (544)
Q Consensus 297 VGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen 374 (544)
-|||... .-..+|+..+|.+ =+-|.+..++..+-..++.++.+..-.--+.|---|-+-.|-.|..++.|||-
T Consensus 16 Tgky~s~----~~~~~ai~aSgae-ivTVAlRR~~~~~~~~~~~l~~i~~~~~~~LPNTAGc~ta~EAvr~A~laRE~ 88 (248)
T cd04728 16 TGKYPSP----AIMKEAIEASGAE-IVTVALRRVNIGDPGGESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREA 88 (248)
T ss_pred CCCCCCH----HHHHHHHHHHCCC-EEEEEEEECCCCCCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4899999----9999999996897-69999863057888852689875233866876540116799999999999998
No 243
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=70.18 E-value=6.2 Score=20.13 Aligned_cols=30 Identities=40% Similarity=0.573 Sum_probs=24.8
Q ss_pred EECCCCHHHHHHHHHHHHHHC--CCEEEEEEE
Q ss_conf 014444489999999999968--982889854
Q gi|254780195|r 11 VVSSLGKGVAAASLGALLQAH--KYKVRVRKL 40 (544)
Q Consensus 11 V~SglGKGi~aaSig~lLk~~--g~~v~~~K~ 40 (544)
|.-|=|||=|+|++|..|++. |++|.++-|
T Consensus 7 vytG~GKGKTTAAlG~alRA~G~G~rV~ivQF 38 (159)
T cd00561 7 VYTGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99579997089999999998449998999998
No 244
>PRK05993 short chain dehydrogenase; Provisional
Probab=70.08 E-value=6.4 Score=20.04 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.|.|+|||+ -||+|+.+ ...|-.+|++|...
T Consensus 3 m~K~vlITGa-ssGIG~al-----A~~la~~G~~V~~~ 34 (277)
T PRK05993 3 MKRSILITGC-SSGIGAYC-----AHALQKRGWRVFAT 34 (277)
T ss_pred CCCEEEEECC-CCHHHHHH-----HHHHHHCCCEEEEE
T ss_conf 9868999256-86999999-----99999879999999
No 245
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.98 E-value=8.2 Score=19.27 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH----HHHH---CCCC
Q ss_conf 78999998741843437999952001481346888888888878736724167722565672344----5662---1698
Q gi|254780195|r 276 DNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDP----VKHF---YGVH 348 (544)
Q Consensus 276 ~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~----~~~L---~~~d 348 (544)
..-...++.... +..-+||+++.-.+.. +..-=.+++..|..+.+......|+...+...+.. .+.| ...+
T Consensus 108 ~~~~~a~~~L~~-~Ghr~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~t 185 (270)
T cd06294 108 QAGYDATEYLIK-LGHKKIAFVGGDLDLE-VTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPT 185 (270)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCCH-HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999997-6995699981899865-89999999999999869997733331377667889999999984699984
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 3997377786550168889988740476
Q gi|254780195|r 349 GILVPGGFGKRGSEGKIAAIKFARENKI 376 (544)
Q Consensus 349 GIlVPGGFG~RGieGkI~Ai~yARen~i 376 (544)
+|+.... .=.+.+++.+|++++
T Consensus 186 ai~~~nD------~~A~g~~~al~~~g~ 207 (270)
T cd06294 186 AIVATDD------LLALGVLKVLNELGL 207 (270)
T ss_pred EEEECCH------HHHHHHHHHHHHCCC
T ss_conf 8998774------999999999998399
No 246
>PRK07707 consensus
Probab=69.89 E-value=6 Score=20.21 Aligned_cols=31 Identities=29% Similarity=0.593 Sum_probs=23.9
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9239999375014444489999999999968982889
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|.|-.+||||- ||+|+.|+ ..|-..|.+|.+
T Consensus 1 M~KvalVTG~s-~GIG~aia-----~~la~~Ga~V~i 31 (239)
T PRK07707 1 MKKYALVTGAS-GGIGQAIS-----KQLAQDGYTVYL 31 (239)
T ss_pred CCCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 99899996688-78999999-----999987998999
No 247
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=69.86 E-value=6.5 Score=19.99 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.5
Q ss_pred EECCCCHHHHHHHHHHHHHHC--CCEEEEEEEC
Q ss_conf 014444489999999999968--9828898544
Q gi|254780195|r 11 VVSSLGKGVAAASLGALLQAH--KYKVRVRKLD 41 (544)
Q Consensus 11 V~SglGKGi~aaSig~lLk~~--g~~v~~~K~D 41 (544)
|.-|=|||=|+|++|.-|++. |++|.++.|=
T Consensus 8 iytG~GKGKTTAAlGlalRA~G~G~rV~ivQFl 40 (172)
T pfam02572 8 VYTGNGKGKSTAAFGMALRALGHGMRVGVVQFI 40 (172)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 995799971889999999982599889999995
No 248
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=69.69 E-value=6.6 Score=19.93 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=23.4
Q ss_pred EECCCCHHHHHHHHHHHHHHC--CCEEEEEEE
Q ss_conf 014444489999999999968--982889854
Q gi|254780195|r 11 VVSSLGKGVAAASLGALLQAH--KYKVRVRKL 40 (544)
Q Consensus 11 V~SglGKGi~aaSig~lLk~~--g~~v~~~K~ 40 (544)
|.-|=|||=|+|++|.-|++. |++|.++-|
T Consensus 27 VytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 58 (190)
T PRK05986 27 VHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 98069987188999999998369988999999
No 249
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=69.53 E-value=9.4 Score=18.84 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHC
Q ss_conf 6024898999970
Q gi|254780195|r 116 PHVTNEIKEFITQ 128 (544)
Q Consensus 116 PHvTdeIk~~I~~ 128 (544)
|.|+++|++.+..
T Consensus 77 p~v~~Ai~~Q~~~ 89 (462)
T PRK06916 77 PELDEAIREQLNK 89 (462)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999866
No 250
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=69.51 E-value=6.3 Score=20.05 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=24.8
Q ss_pred EECCCCHHHHHHHHHHHHHHC--CCEEEEEEE
Q ss_conf 014444489999999999968--982889854
Q gi|254780195|r 11 VVSSLGKGVAAASLGALLQAH--KYKVRVRKL 40 (544)
Q Consensus 11 V~SglGKGi~aaSig~lLk~~--g~~v~~~K~ 40 (544)
|.-|=|||=++|++|..|++. |+||.++.|
T Consensus 26 VYTGdGKGKTTAAlGlalRA~G~G~rV~ivQF 57 (178)
T PRK07414 26 VFTSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99579998089999999999539987999997
No 251
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.44 E-value=9.4 Score=18.83 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCCEEEEE
Q ss_conf 243122212306899999999874977685799997467542256620034789-9999999749987689992
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQ-HSVKELQALGVHPDILLIR 212 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQ-hSVk~Lrs~GIqPDiivcR 212 (544)
||=.|-|+.+ ||..++.+=..+.-+. ..+-++- ..+.+. -..| ..+..|.+-| +|-|+.-
T Consensus 2 Ig~vv~~~~n-pF~~~~~~G~~~~a~~-~G~~~~~------~~~~~d---~~~q~~~i~~~i~~~--vDgIii~ 62 (277)
T cd06319 2 IAYIVSDLRI-PFWQIMGRGVKSKAKA-LGYDAVE------LSAENS---AKKELENLRTAIDKG--VSGIIIS 62 (277)
T ss_pred EEEEECCCCC-HHHHHHHHHHHHHHHH-CCCEEEE------ECCCCC---HHHHHHHHHHHHHCC--CCEEEEC
T ss_conf 8999189998-6999999999999997-2998999------769999---999999999999669--9879964
No 252
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=69.32 E-value=9.4 Score=18.81 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=6.7
Q ss_pred HHHHHHHCCCCCH
Q ss_conf 8998874047632
Q gi|254780195|r 366 AAIKFARENKIPF 378 (544)
Q Consensus 366 ~Ai~yARen~iP~ 378 (544)
.++++.|++++.=
T Consensus 194 ~i~~~L~~~Gi~~ 206 (351)
T PRK10461 194 HLARLMEQEGISR 206 (351)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999999769984
No 253
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.89 E-value=2 Score=23.72 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=35.8
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 94889999838788886204789999987418434379999520014813468888888888787367241677225656
Q gi|254780195|r 256 GIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL 335 (544)
Q Consensus 256 ~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l 335 (544)
.+++.++..|.+.... ..|.+|.-.. ++-.|-=-+-|. +.+.+---+.||-+.|- + +|. .+
T Consensus 18 EIHEsVltllai~r~G----A~~~cFAP~~--~Q~hViNHlTGE--~m~EtRNVLvEsARIaR---G---~i~-----~l 78 (217)
T COG3155 18 EIHESVLTLLAISRSG----AQAVCFAPDK--QQVHVINHLTGE--AMPETRNVLVESARIAR---G---EIR-----PL 78 (217)
T ss_pred HHHHHHHHHHHHHHCC----CEEEEECCCC--HHHHHHHHCCCC--CCHHHHHHHHHHHHHHH---C---CCC-----CH
T ss_conf 8899999999997538----6258746992--256666531421--24034446887777761---5---666-----23
Q ss_pred CCCCHHHHHCCCCEEEECCCCCC
Q ss_conf 72344566216983997377786
Q gi|254780195|r 336 EKEDPVKHFYGVHGILVPGGFGK 358 (544)
Q Consensus 336 e~~~~~~~L~~~dGIlVPGGFG~ 358 (544)
...+ -+.+|+++||||||.
T Consensus 79 ~~a~----~e~~DALivPGGFGA 97 (217)
T COG3155 79 AQAD----AEELDALIVPGGFGA 97 (217)
T ss_pred HHCC----HHHCCEEECCCCCCH
T ss_conf 4569----766342661586302
No 254
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=68.65 E-value=9.7 Score=18.72 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=14.2
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 69839973777865501688899887404763
Q gi|254780195|r 346 GVHGILVPGGFGKRGSEGKIAAIKFARENKIP 377 (544)
Q Consensus 346 ~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP 377 (544)
+.++|+.... .-.+.+++.+|+.++|
T Consensus 181 ~~~ai~~~nd------~~a~g~~~al~~~g~~ 206 (267)
T cd01536 181 DIDAIFAAND------SMALGAVAALKAAGRK 206 (267)
T ss_pred CCEEEEECCC------HHHHHHHHHHHHCCCC
T ss_conf 8629997164------9999999999976999
No 255
>PRK03202 6-phosphofructokinase; Provisional
Probab=68.60 E-value=2.8 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=16.4
Q ss_pred CCEE--EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9239--99937501444448999999999996898288985
Q gi|254780195|r 1 MVKY--IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 1 m~Ky--I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|||- |+..||-.+|+---|.+.-.. ...+|++|.-++
T Consensus 1 ~~kriaIltsGG~~pGmNa~ir~vv~~--a~~~g~~v~G~~ 39 (323)
T PRK03202 1 MMKKIGVLTSGGDAPGMNAAIRGVVRT--AISEGLEVYGIY 39 (323)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--HHHCCCEEEEEE
T ss_conf 986699993688867789999999999--997899999991
No 256
>PRK05480 uridine kinase; Provisional
Probab=68.59 E-value=9.7 Score=18.73 Aligned_cols=52 Identities=31% Similarity=0.356 Sum_probs=35.6
Q ss_pred CCE---EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 923---999937501444448999999999996898288985445533488888864435
Q gi|254780195|r 1 MVK---YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHG 57 (544)
Q Consensus 1 m~K---yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHG 57 (544)
||| -|-|+|| ||-||-..|..|...|.. .+|+.+-.|-|.. |..-+++-|.|
T Consensus 2 ~~k~P~iIgIaG~--SgSGKTT~a~~L~~~l~~--~~v~vi~~D~Yy~-~~~~~~~~e~~ 56 (209)
T PRK05480 2 MMKQPIIIGIAGG--SGSGKTTVASTIYEELGD--ESIAVISQDSYYK-DQSHLSMEERV 56 (209)
T ss_pred CCCCCEEEEEECC--CCCCHHHHHHHHHHHCCC--CCEEEEECCCCCC-CCCCCCHHHHC
T ss_conf 9889889999899--977899999999998086--8759995544124-73407886812
No 257
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=68.35 E-value=2.4 Score=23.13 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=24.4
Q ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 21698399737778655016888998874047632235576
Q gi|254780195|r 344 FYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 344 L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
++++|-|++-||=|. ++.|++.....++|+|||=+|
T Consensus 23 ~~eaDliIvlGGDGT-----~L~a~r~~~~~~~PilGIN~G 58 (246)
T PRK04761 23 IEEADVIVALGGDGF-----MLQTLHRYMNSGKPVYGMNRG 58 (246)
T ss_pred HHHCCEEEEECCCHH-----HHHHHHHHHCCCCCEEEEECC
T ss_conf 657999999898799-----999999874149937989779
No 258
>PRK09730 hypothetical protein; Provisional
Probab=68.20 E-value=6.2 Score=20.14 Aligned_cols=30 Identities=33% Similarity=0.606 Sum_probs=19.7
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 239999375014444489999999999968982889
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
||-.+|||| -||+|++++ ..|-..|++|.+
T Consensus 1 mKValITGa-s~GIG~aia-----~~la~~Ga~V~i 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRATA-----LLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEECC-CCHHHHHHH-----HHHHHCCCEEEE
T ss_conf 979999062-269999999-----999987999999
No 259
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=68.02 E-value=8 Score=19.33 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=27.2
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 399993750144444899999999999689828898
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.|-|+| .=|||=++|-+..+|++.||||-.-
T Consensus 50 ~~IhVaG----TNGKGSt~~~l~~il~~~G~~vG~f 81 (416)
T PRK10846 50 FVFTVAG----TNGKGTTCRTLESILMAAGYRVGVY 81 (416)
T ss_pred CEEEEEC----CCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9899968----8557999999999999879973077
No 260
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=67.98 E-value=8.9 Score=18.98 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 44444899999999999689828898544553
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPYL 44 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPYl 44 (544)
-|.||-..+..++.-|..+|.+|.++-.||--
T Consensus 11 GG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~ 42 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALFEADENR 42 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 98769999999999999789959999689986
No 261
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=67.64 E-value=7.2 Score=19.68 Aligned_cols=30 Identities=40% Similarity=0.460 Sum_probs=21.2
Q ss_pred EECCCCHHHHHHHHHHHHHHC--CCEEEEEEE
Q ss_conf 014444489999999999968--982889854
Q gi|254780195|r 11 VVSSLGKGVAAASLGALLQAH--KYKVRVRKL 40 (544)
Q Consensus 11 V~SglGKGi~aaSig~lLk~~--g~~v~~~K~ 40 (544)
|..|=|||=|+|.+|+-|++- |++|.++-|
T Consensus 10 v~TGnGKGKtTAAlG~alR~lg~G~~v~v~QF 41 (191)
T TIGR00708 10 VHTGNGKGKTTAALGMALRALGHGKKVGVIQF 41 (191)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 98469983668999999987408981689874
No 262
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=67.57 E-value=9.1 Score=18.91 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 44444899999999999689828898544553
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPYL 44 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPYl 44 (544)
-|.||-.++..++.-|..+|.+|..+-.||--
T Consensus 11 GG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~ 42 (231)
T pfam07015 11 GGAGKTTALMGLCSALASDGKRVALFEADENR 42 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 98659999999999999689959999689986
No 263
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=67.33 E-value=5.3 Score=20.64 Aligned_cols=108 Identities=29% Similarity=0.359 Sum_probs=59.3
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH------------HHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHH
Q ss_conf 7778655016888998874047632235576------------9999999987516889997000356666412115011
Q gi|254780195|r 354 GGFGKRGSEGKIAAIKFARENKIPFLGICFG------------MQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEW 421 (544)
Q Consensus 354 GGFG~RGieGkI~Ai~yARen~iP~LGIClG------------mQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~ 421 (544)
|-.|..-=|--+.|+++|.++++|++.+|-+ ||++-+-.|-+. +.+.+-|.|..++.
T Consensus 138 GSmG~~~GEki~~a~e~A~~~~~PlI~~~~SGGaRMQEGi~SLmQMaKts~A~~~----------l~~~~lpyI~vlt~- 206 (288)
T PRK05654 138 GSMGSVVGEKIVRAVERALEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKR----------LSEAGLPYISVLTD- 206 (288)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHH----------HHHCCCCEEEEECC-
T ss_conf 6645789999999999999749978999678763332746789988999999999----------99769968999668-
Q ss_pred CCCCCCCCCCCCCCCCCEE----EECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHH--HHHHHHCCCE
Q ss_conf 2346530015655467402----31652578558706688637984766025233327889--9899978959
Q gi|254780195|r 422 MKGDQQEKRLPSDDLGATM----RLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRY--REKLEGCGLK 488 (544)
Q Consensus 422 ~~~~~~~~~~~~~~~GGTM----RLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y--~~~le~~Gl~ 488 (544)
.-.||.. =||.. ..-+|++++-- -|...|.+--| =+.-+.| -+-|.++|++
T Consensus 207 ------------PttGGvtASfa~lgDi-iiaEp~A~IgF-AG~RVIeqti~--~~LP~~FQtae~ll~~G~i 263 (288)
T PRK05654 207 ------------PTTGGVSASFAMLGDI-IIAEPKALIGF-AGPRVIEQTVR--EKLPEGFQRAEFLLEHGAI 263 (288)
T ss_pred ------------CCCCCEEEEECCCCCE-EEEECCCEEEE-CCCHHHHHHCC--CCCCCCHHHHHHHHHCCCC
T ss_conf ------------9858944430247877-99805845873-15389998508--9899740118999977996
No 264
>PRK06696 uridine kinase; Validated
Probab=66.89 E-value=9 Score=18.98 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.2
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 9993750144444899999999999689828898544553348
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSD 47 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD 47 (544)
|=|.| .||-||+..|..|...|..+|..|..+-+|-|++-.
T Consensus 29 VgIdG--~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~ 69 (227)
T PRK06696 29 VAIDG--ITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPK 69 (227)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 99778--998787999999999997469948997154434737
No 265
>PRK08263 short chain dehydrogenase; Provisional
Probab=66.77 E-value=7.8 Score=19.41 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 92399993750144444899999999999689828898544
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLD 41 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~D 41 (544)
|.|-+||||+ -||+|+.++ ..|-.+|.+|...--|
T Consensus 2 ~gKv~lITGa-ssGIG~a~A-----~~la~~G~~Vv~~~R~ 36 (275)
T PRK08263 2 MGKVWFITGA-SRGFGREWT-----EAALERGDRVVATARD 36 (275)
T ss_pred CCCEEEEECC-CHHHHHHHH-----HHHHHCCCEEEEEECC
T ss_conf 8998999467-439999999-----9999879989999798
No 266
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=66.69 E-value=5.2 Score=20.69 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf 983997377786550168889988740476322
Q gi|254780195|r 347 VHGILVPGGFGKRGSEGKIAAIKFARENKIPFL 379 (544)
Q Consensus 347 ~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~L 379 (544)
-|-+||-|| ..+|.| -.|++||+++++|..
T Consensus 32 pd~vlihGG-~~kGad--~lA~~WA~~~gv~~i 61 (71)
T pfam10686 32 PDMVLLHGG-APKGAE--RIAARWARRRGVPQV 61 (71)
T ss_pred CCEEEEECC-CCCCHH--HHHHHHHHHCCCCEE
T ss_conf 987999779-863379--999999998699769
No 267
>PRK01184 hypothetical protein; Provisional
Probab=66.67 E-value=8.6 Score=19.09 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=23.3
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 23999937501444448999999999996898288
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVR 36 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~ 36 (544)
|+-|-+|||.-|| |+.+|. +|+.+|+.|-
T Consensus 1 M~iIGlTG~iGSG--Kstva~----i~~e~G~~vi 29 (183)
T PRK01184 1 MMIIIVTGMPGSG--KGEFSK----IARELGIPVV 29 (183)
T ss_pred CEEEEEECCCCCC--HHHHHH----HHHHCCCEEE
T ss_conf 9399996899887--899999----9997799399
No 268
>PRK07667 uridine kinase; Provisional
Probab=66.48 E-value=9.8 Score=18.70 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=33.7
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 99937501444448999999999996898288985445533
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlN 45 (544)
|=|.|| ||-||...|..|...|+..|..|..+-.|-|.+
T Consensus 17 IgIaG~--sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~ 55 (190)
T PRK07667 17 LGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDHIV 55 (190)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 997798--978899999999999866598379996662426
No 269
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=66.37 E-value=11 Score=18.40 Aligned_cols=49 Identities=29% Similarity=0.312 Sum_probs=38.9
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCCCCCC
Q ss_conf 999937501444448999999999996898288985445533--488888864
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLN--SDPGTMSPV 54 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlN--vD~GtmsP~ 54 (544)
-++|.|+|=| ||-..++=|+.-|-++|++|..+-.||==| .-||+||=+
T Consensus 75 ~vmvvG~vDS--GKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~ 125 (398)
T COG1341 75 VVMVVGPVDS--GKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLA 125 (398)
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 8999898676--78899999998876447418999689997666797467741
No 270
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=66.27 E-value=3 Score=22.40 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCEEEEEEC-CEECCCCHHHHHHHHHHH
Q ss_conf 923999937-501444448999999999
Q gi|254780195|r 1 MVKYIFITG-GVVSSLGKGVAAASLGAL 27 (544)
Q Consensus 1 m~KyI~VtG-GV~SglGKGi~aaSig~l 27 (544)
|||=|+||| |++|.+|.|+-+--=+.+
T Consensus 1 Mm~rVvITGiGivsplG~~~~~~w~~L~ 28 (395)
T PRK09185 1 MMTPVYITAFGATSALGAGLDAILAALR 28 (395)
T ss_pred CCCCEEEECHHHCCCCCCCHHHHHHHHH
T ss_conf 9986999462004878089999999998
No 271
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6.3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes. FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see ). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process.
Probab=66.13 E-value=8.9 Score=19.01 Aligned_cols=37 Identities=38% Similarity=0.563 Sum_probs=29.5
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHH-HHCCCEEEEEEECCCC
Q ss_conf 39999375014444489999999999-9689828898544553
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALL-QAHKYKVRVRKLDPYL 44 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lL-k~~g~~v~~~K~DPYl 44 (544)
+.|=|+| .=|||=|+|-+..|| +..||+|-.-= =|||
T Consensus 22 ~~IHVaG----TNGKGST~a~l~~iL~~~~G~~VG~fT-SPHl 59 (460)
T TIGR01499 22 PVIHVAG----TNGKGSTCAFLESILREAAGYKVGLFT-SPHL 59 (460)
T ss_pred CEEEEEE----ECCCHHHHHHHHHHHHHHCCCEEEEEE-CCEE
T ss_conf 7799972----068758999999998875397788887-3738
No 272
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=66.11 E-value=7.7 Score=19.46 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=29.0
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 1698399737778655016888998874047632235576
Q gi|254780195|r 345 YGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 345 ~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
+.+|-|++-||=|. .+.|++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt-----lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT-----LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred CCCEEEEEECCCHH-----HHHHHHHHCCCCCCEEEEECC
T ss_conf 77649999899689-----999999745569978999889
No 273
>PRK06101 short chain dehydrogenase; Provisional
Probab=65.99 E-value=7.5 Score=19.51 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=23.6
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 239999375014444489999999999968982889854
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
||-|+|||| -||+|+.++- .|-.+|.+|...--
T Consensus 1 MktvlITGa-ssGIG~a~A~-----~la~~G~~Vi~~~R 33 (241)
T PRK06101 1 MTSVLITGA-TSGIGKQLAL-----DYAKAGWKVIACGR 33 (241)
T ss_pred CCEEEEECC-CHHHHHHHHH-----HHHHCCCEEEEEEC
T ss_conf 998999224-0499999999-----99987998999989
No 274
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=65.91 E-value=10 Score=18.51 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=27.1
Q ss_pred CCEE-EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE-ECC
Q ss_conf 9239-99937501444448999999999996898288985-445
Q gi|254780195|r 1 MVKY-IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK-LDP 42 (544)
Q Consensus 1 m~Ky-I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K-~DP 42 (544)
|.|| |+|.| =|++..+++..|..+|++|..+. -+|
T Consensus 1 M~~~DV~IvG-------aG~vGl~lAl~La~~G~~V~iiE~~~p 37 (384)
T PRK08849 1 MNKYDIAVVG-------GGMVGAATAIGFAKQGRSVAVIEGFEP 37 (384)
T ss_pred CCCCCEEEEC-------CCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9818999999-------249999999999957995999968998
No 275
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=65.90 E-value=11 Score=18.34 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=8.5
Q ss_pred HHHHHHHHCCCCCCEEEEE
Q ss_conf 9999999749987689992
Q gi|254780195|r 194 HSVKELQALGVHPDILLIR 212 (544)
Q Consensus 194 hSVk~Lrs~GIqPDiivcR 212 (544)
.-++.|.+-| +|-|+.-
T Consensus 46 ~~i~~li~~~--vDgIii~ 62 (273)
T cd06309 46 SAIRSFIAQG--VDVIILA 62 (273)
T ss_pred HHHHHHHHCC--CCEEEEC
T ss_conf 9999999759--9999980
No 276
>PRK06123 short chain dehydrogenase; Provisional
Probab=65.86 E-value=8 Score=19.34 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=17.2
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 239999375014444489999999999968982889
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
-|-++||||- ||+|+.++ ..|-..|.+|.+
T Consensus 3 nKvalITGas-~GIG~aia-----~~la~~Ga~V~i 32 (249)
T PRK06123 3 RKVMIITGAS-RGIGAATA-----LLAAERGYAVCL 32 (249)
T ss_pred CCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 9889996868-79999999-----999987998999
No 277
>COG2403 Predicted GTPase [General function prediction only]
Probab=65.80 E-value=8.3 Score=19.22 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=28.6
Q ss_pred ECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 375014444489999999999968982889854
Q gi|254780195|r 8 TGGVVSSLGKGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 8 tGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
.-|+=-|.||--+|+-++++|+.|||+|..+..
T Consensus 131 V~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 131 VTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 997236655678889999999866982379955
No 278
>PRK05926 hypothetical protein; Provisional
Probab=65.79 E-value=7.8 Score=19.42 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=61.2
Q ss_pred HHHHHHHHHCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4898999970788-987899972431222123068999999998749776857999974675422566200347899999
Q gi|254780195|r 119 TNEIKEFITQGNE-DADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVK 197 (544)
Q Consensus 119 TdeIk~~I~~~~~-~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk 197 (544)
.+||.+++.+... -.+|+|+ ||--=|..--.|.|-+|.++.+++. +.||--=-+.+.-.-+.--.+..--.+
T Consensus 102 ~eei~~~v~e~~~g~tEv~i~--GG~hP~l~~~yY~~l~~~ik~~~P~-----v~ihaft~~EI~~~a~~~~~s~~EvL~ 174 (371)
T PRK05926 102 PDQLIQSIQEIKSPITETHIV--AGCFPSCNLAYYEELFSKIKENFPD-----IHIKALTAIEYAYLSKLDNLPVREVLQ 174 (371)
T ss_pred HHHHHHHHHHHHCCCCEEEEE--CCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999987599689971--7889899869999999999975898-----741448899999999980999999999
Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99974998768999238758999999998
Q gi|254780195|r 198 ELQALGVHPDILLIRADRDIPEMERRKIS 226 (544)
Q Consensus 198 ~Lrs~GIqPDiivcRse~~l~~~~k~KIa 226 (544)
.|+..|+.- +---.-.=+++++|++|+
T Consensus 175 ~Lk~AGL~S--lPGgGAEIl~d~VR~~I~ 201 (371)
T PRK05926 175 TLKIAGLDS--IPGGGAEILVDEIRETLA 201 (371)
T ss_pred HHHHHCCCC--CCCCCHHHCCHHHHHHHC
T ss_conf 999838777--888732434778999758
No 279
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=65.76 E-value=11 Score=18.40 Aligned_cols=67 Identities=31% Similarity=0.353 Sum_probs=41.4
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC---CCCHHHHHH-HHHHHCCCCCHHHHHHH--HHHHHHHHHH
Q ss_conf 4167722565672344566216983997377786---550168889-98874047632235576--9999999987
Q gi|254780195|r 325 VQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGK---RGSEGKIAA-IKFARENKIPFLGICFG--MQMAVIEAAR 394 (544)
Q Consensus 325 v~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~---RGieGkI~A-i~yARen~iP~LGIClG--mQ~avIEfAR 394 (544)
-++.+||+..|.++. |.. .-.-++.|||--. +-..|++.| |+.--.+.=-|||||-| +-.+.+|||.
T Consensus 31 y~v~~V~~~~Li~Ep-W~~--~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YFg~~~veF~~ 103 (253)
T COG4285 31 YAVDRVDAQFLIKEP-WEE--TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYFGSAYVEFAE 103 (253)
T ss_pred HEEEEEEEHEEECCC-CHH--CEEEEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEC
T ss_conf 147775301000585-510--2079993288774387775212255587887558708998325543534799835
No 280
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=65.60 E-value=7.8 Score=19.39 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 444489999999999968982889854455
Q gi|254780195|r 14 SLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 14 glGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
|+||-.|||-|..=|-.+|-||--|=+||=
T Consensus 10 GiGKSTTssNLSvA~A~~GkkVlQIGCDPK 39 (275)
T TIGR01281 10 GIGKSTTSSNLSVALAKKGKKVLQIGCDPK 39 (275)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 877004678999999846991898525788
No 281
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=65.47 E-value=8.9 Score=18.99 Aligned_cols=175 Identities=21% Similarity=0.323 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECC---CCCCHHHHHHHHHHCCCCHHHEEE----CCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 4789999999974998768999238---758999999998641988677240----389862026689887649488999
Q gi|254780195|r 190 KPTQHSVKELQALGVHPDILLIRAD---RDIPEMERRKISLFCNVPMSAVIP----ALDVDDIYKVPLSYHREGIDSVVL 262 (544)
Q Consensus 190 KPTQhSVk~Lrs~GIqPDiivcRse---~~l~~~~k~KIalfc~V~~~~Vi~----~~Dv~sIY~VPl~l~~q~l~~~I~ 262 (544)
=|...+.++...+|=.-+=-+..++ ..|+-+.-++-=.- ..+.||. .-|..-.|++|..-.+.|-. |+
T Consensus 922 L~~e~~~~~~~~~G~t~~~f~~k~~gyd~~~~L~~l~~A~~~---~Le~vFpyr~k~e~k~e~~~~~~~~~~dGan--il 996 (1279)
T TIGR01857 922 LEDELELANVEKIGETTKDFVLKVNGYDEKLDLEELEEAWEE---KLEEVFPYRSKLEDKKETVEVLAVASEDGAN--IL 996 (1279)
T ss_pred CHHHHCCCCEEECCCEEEEEEEEEEEEEEEECHHHHHHHHHC---CCCEECCCCCCCCHHHHHHHHHHHCCCCCCC--CH
T ss_conf 444530224034141752027998523553067999999863---7830156455440146778677541744441--01
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEE-EEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC--
Q ss_conf 98387888862047899999874184-3437999-9520014813468888888888787367241677225656723--
Q gi|254780195|r 263 NAFGIENVSLPQIDNWQTFCDRTLSL-KNEVKVA-IVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKE-- 338 (544)
Q Consensus 263 ~~L~l~~~~~~~l~~W~~~~~~~~~~-~~~V~Ia-iVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~-- 338 (544)
+-=++.-.+ +++.....- |..|-|+ +=|-=. -=|+|. |+.-+| ..|++..+. +|+++
T Consensus 997 dnGqmhiek--------k~~~~~~~v~KP~VvIpvFPGtNs-EYD~~~----aFe~~G----Aev~~~~~~--nL~~~a~ 1057 (1279)
T TIGR01857 997 DNGQMHIEK--------KVVKAKEKVEKPRVVIPVFPGTNS-EYDSAK----AFEKEG----AEVKLVILR--NLTEEAL 1057 (1279)
T ss_pred HCCCEEEEE--------EEEEECCEEECCEEEEECCCCCCC-HHHHHH----HHHHCC----CCEEEEEEC--CCCHHHH
T ss_conf 067356655--------887613054078679813588984-888888----985458----958996000--3888899
Q ss_pred -----CHHHHHCCCCEEEECCCCCC----CCCHHHH-----------HHHH-HHHCCCCCHHHHHHHHHHHH
Q ss_conf -----44566216983997377786----5501688-----------8998-87404763223557699999
Q gi|254780195|r 339 -----DPVKHFYGVHGILVPGGFGK----RGSEGKI-----------AAIK-FARENKIPFLGICFGMQMAV 389 (544)
Q Consensus 339 -----~~~~~L~~~dGIlVPGGFG~----RGieGkI-----------~Ai~-yARen~iP~LGIClGmQ~av 389 (544)
...+.+.+.+=+++||||-. -|. +|- .||+ +-.++.==.||||=|||..|
T Consensus 1058 ~~Sv~~l~~~i~ksqI~~lpGGFSAgDEPDGS-AKFi~~~l~npkv~~~v~~lL~~RDGLiLGiCNGFQALv 1128 (1279)
T TIGR01857 1058 VESVEELVDEIDKSQILMLPGGFSAGDEPDGS-AKFIAAILRNPKVKEAVKKLLKERDGLILGICNGFQALV 1128 (1279)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-HHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 99999998740464089955878777788852-899999760814799999999607984986200567888
No 282
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=65.45 E-value=11 Score=18.28 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=24.1
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1698399737778655016888998874-04763223557699999999875
Q gi|254780195|r 345 YGVHGILVPGGFGKRGSEGKIAAIKFAR-ENKIPFLGICFGMQMAVIEAARN 395 (544)
Q Consensus 345 ~~~dGIlVPGGFG~RGieGkI~Ai~yAR-en~iP~LGIClGmQ~avIEfARn 395 (544)
.+.++|+.... -...|.+.|++-+. ..++...|..+.=+ .++.-++
T Consensus 178 pdi~~i~~~~~---~~a~ga~~Al~~~g~~~~i~vvg~D~~~~--~~~~i~~ 224 (271)
T cd06314 178 PDLKCMFGLYA---YNGPAIAEAVKAAGKLGKVKIVGFDEDPD--TLQGVKE 224 (271)
T ss_pred CCCCEEEEECC---CCHHHHHHHHHHHCCCCCCEEEEECCCHH--HHHHHHC
T ss_conf 99878998088---51699999999847589967998789899--9999982
No 283
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=65.43 E-value=11 Score=18.28 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHC
Q ss_conf 6024898999970
Q gi|254780195|r 116 PHVTNEIKEFITQ 128 (544)
Q Consensus 116 PHvTdeIk~~I~~ 128 (544)
|+|.++|++.+.+
T Consensus 61 p~i~~Ai~~q~~~ 73 (421)
T PRK05964 61 PHIDAAIREQLDR 73 (421)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999975
No 284
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=65.39 E-value=11 Score=18.28 Aligned_cols=173 Identities=21% Similarity=0.262 Sum_probs=88.7
Q ss_pred CCEEEEEECCEECCCCHHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHC
Q ss_conf 923999937501444448999999-9999968982889854455334888888644350787279840025564113322
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASL-GALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFM 79 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSi-g~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl 79 (544)
||+.|-|+.| =-|.||-.++|.+ +.+++.+|.+|..+-.|+ .+||-..-+
T Consensus 1 ~~~~Iav~Sg-KGGvGKTtitanlga~~~~~~~k~V~~iDaD~----------------------------g~~nL~~~~ 51 (262)
T COG0455 1 MTKVIAVVSG-KGGVGKTTITANLGAALAALGGKVVLLIDADL----------------------------GLGNLSLLL 51 (262)
T ss_pred CCEEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC----------------------------CCCCHHHHH
T ss_conf 9789999845-88756898998699999964897699996588----------------------------887288885
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCC---CCC--CCEEECCCHHHH---------H-HHHHHCCCCCCCEEEEECCCCC
Q ss_conf 874775468012589999998885777---577--402564602489---------8-9999707889878999724312
Q gi|254780195|r 80 GISTAKADNITAGRIYKNVIDRERRGD---YLG--TTVQVIPHVTNE---------I-KEFITQGNEDADFVICEIGGTI 144 (544)
Q Consensus 80 ~~~l~~~~niT~Gkiy~~vi~kER~G~---ylG--~TVQvIPHvTde---------I-k~~I~~~~~~~Dv~ivEiGGTV 144 (544)
++.- .-|+ ..+||+.+++=+ |-+ ..|-+||--.+. . ...+.+..+..|++++-.|+.+
T Consensus 52 g~~~----~~~~---l~dvL~~~~~~~Di~~~~~~~gl~vipg~~~~~~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl 124 (262)
T COG0455 52 GVES----KPTT---LHDVLAGEASIEDIIYETPQDGLYVLPGGSGLEDLAKLDPEDLEDVIKELEELYDYILIDTGAGL 124 (262)
T ss_pred CCCC----CCCC---HHHHHHCCCCHHHEEEECCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 8888----8550---99997077877680231576898996078876888616988899999998752999999689996
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC---EEEEECCCCCC-HH
Q ss_conf 221230689999999987497768579999746754225662003478999999997499876---89992387589-99
Q gi|254780195|r 145 GDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPD---ILLIRADRDIP-EM 220 (544)
Q Consensus 145 GDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPD---iivcRse~~l~-~~ 220 (544)
+.=- +.|+.+ .|.+.+=+| |.+.+.. .+=.-++-++..|++.. +++-|.+.+-+ .+
T Consensus 125 ~~~~-~~~~~~------------sd~~viVt~--pe~~si~-----~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~ 184 (262)
T COG0455 125 SRDT-LSFILS------------SDELVIVTT--PEPTSIT-----DAYKTIKILSKLGLDLLGRRVVLNRVRSTKEGVD 184 (262)
T ss_pred CHHH-HHHHHH------------CCCEEEEEC--CCCCHHH-----HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHH
T ss_conf 6888-999873------------681799927--9852089-----9999999999738764331589970366665467
Q ss_pred HHHHHHHHC
Q ss_conf 999998641
Q gi|254780195|r 221 ERRKISLFC 229 (544)
Q Consensus 221 ~k~KIalfc 229 (544)
.-.++..|+
T Consensus 185 ~~~~~~~~~ 193 (262)
T COG0455 185 VAALLIQVV 193 (262)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 285
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=65.29 E-value=10 Score=18.59 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=28.1
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 1444448999999999996898288985445
Q gi|254780195|r 12 VSSLGKGVAAASLGALLQAHKYKVRVRKLDP 42 (544)
Q Consensus 12 ~SglGKGi~aaSig~lLk~~g~~v~~~K~DP 42 (544)
=.|+||-.+++.++..|..+|.+|..+-.|.
T Consensus 8 KgGvGkt~~~~nLa~~la~~G~~vll~D~D~ 38 (139)
T cd02038 8 KGGVGKTNISANLALALAKLGKRVLLLDADL 38 (139)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9998399999999999997899699998989
No 286
>PRK07102 short chain dehydrogenase; Provisional
Probab=65.13 E-value=8.3 Score=19.21 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=22.8
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 239999375014444489999999999968982889854
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
||-|+||||- ||+|+.++ ..|-.+|++|...--
T Consensus 1 MK~vlITGas-sGIG~a~A-----~~la~~G~~v~l~~R 33 (243)
T PRK07102 1 MKKILIIGAT-SDIARACA-----RRYAAAGARLYLAAR 33 (243)
T ss_pred CCEEEEECCC-HHHHHHHH-----HHHHHCCCEEEEEEC
T ss_conf 9979991574-59999999-----999987998999989
No 287
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=64.46 E-value=12 Score=18.16 Aligned_cols=30 Identities=3% Similarity=0.187 Sum_probs=14.2
Q ss_pred CCCEEEECCCCCCCCC----HHHHHC---CCCEEEEC
Q ss_conf 2416772256567234----456621---69839973
Q gi|254780195|r 324 KVQLSWIDAETLEKED----PVKHFY---GVHGILVP 353 (544)
Q Consensus 324 kv~i~wIdse~le~~~----~~~~L~---~~dGIlVP 353 (544)
.+++.+....+.+.+. ..+.|+ +.++|+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~~aI~~~ 188 (268)
T cd06323 152 GLKVVASQPADFDRAKGLNVMENILQAHPDIKGVFAQ 188 (268)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 9558877224202799999999998629888589977
No 288
>PRK06940 short chain dehydrogenase; Provisional
Probab=64.45 E-value=12 Score=18.16 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=17.6
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.|=+.||||- ||+|+.|+- .| +.|.+|.+.
T Consensus 3 L~~kV~v~tGa-~GIG~aiA~-----~l-a~Ga~vvi~ 33 (277)
T PRK06940 3 MSKEVVVVIGA-GGMGQAIAR-----RV-GSGKTVLLA 33 (277)
T ss_pred CCCCEEEECCC-CHHHHHHHH-----HH-HHCCEEEEE
T ss_conf 89929999781-699999999-----99-819989999
No 289
>pfam05516 consensus
Probab=64.32 E-value=4.7 Score=21.00 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 6999999998751688999
Q gi|254780195|r 384 GMQMAVIEAARNLAGIPNA 402 (544)
Q Consensus 384 GmQ~avIEfARnvlgl~dA 402 (544)
.||-.+||.|||..|+.|.
T Consensus 117 RiqFyAiEIARNreGlNd~ 135 (136)
T pfam05516 117 RIQFYAIEIARNREGLNDW 135 (136)
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 7889999999701545577
No 290
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=64.03 E-value=6.3 Score=20.06 Aligned_cols=204 Identities=16% Similarity=0.220 Sum_probs=107.4
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCC
Q ss_conf 23999937501444448999999999996898288985445533488888864435078727984002556411332287
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGI 81 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~ 81 (544)
|+.|+||| +||-||.++.-| |+..||-. +|
T Consensus 1 m~lvIVTG--lSGAGKsvAl~~----lEDlGyyc----------vD---------------------------------- 30 (286)
T COG1660 1 MRLVIVTG--LSGAGKSVALRV----LEDLGYYC----------VD---------------------------------- 30 (286)
T ss_pred CCEEEEEC--CCCCCHHHHHHH----HHHCCEEE----------EC----------------------------------
T ss_conf 94699956--888768899999----97458045----------35----------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 47754680125899999988857775774025646024898999970788987899972431222123068999999998
Q gi|254780195|r 82 STAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGN 161 (544)
Q Consensus 82 ~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~ 161 (544)
|+ -+|.+|+..+-+. ...++..-+.+ |=||-|.-|+..+.|...
T Consensus 31 ------NL---------------------Pp~Llp~~~~~~~---~~~~~~~kvAv------~iDiRs~~~~~~l~~~l~ 74 (286)
T COG1660 31 ------NL---------------------PPQLLPKLADLML---TLESRITKVAV------VIDVRSREFFGDLEEVLD 74 (286)
T ss_pred ------CC---------------------CHHHHHHHHHHHH---HCCCCCCEEEE------EEECCCCHHHHHHHHHHH
T ss_conf ------89---------------------9889999999976---30567752799------996145031788999999
Q ss_pred HCCCCCCCEEEEEEEEEEEECCCCCC---------HHHHHH------HHHHHHHH----CCCCCCEEEEECCCCCCHHHH
Q ss_conf 74977685799997467542256620---------034789------99999997----499876899923875899999
Q gi|254780195|r 162 EFSHRGSKALYIHLTLMPYIRSSGEL---------KTKPTQ------HSVKELQA----LGVHPDILLIRADRDIPEMER 222 (544)
Q Consensus 162 e~g~~~~n~~fiHvtlvP~l~~~gE~---------KTKPTQ------hSVk~Lrs----~GIqPDiivcRse~~l~~~~k 222 (544)
++..+. + .-+++ .++.|..|- ..-|.+ .+++.=|+ +-=..|.++=-|+-. +.+.+
T Consensus 75 ~l~~~~-~-~~~~i---LFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls-~~~Lr 148 (286)
T COG1660 75 ELKDNG-D-IDPRV---LFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELS-VHELR 148 (286)
T ss_pred HHHHCC-C-CCCEE---EEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCC-HHHHH
T ss_conf 998557-9-87249---999786457998875520028887667278999999998887887766276556688-99999
Q ss_pred HHHHHHCC---------------------CCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99986419---------------------886772403898620266898876494889999838788886204789999
Q gi|254780195|r 223 RKISLFCN---------------------VPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTF 281 (544)
Q Consensus 223 ~KIalfc~---------------------V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~ 281 (544)
++|..+-. ++.+-||.+.=.+|-|-+|-+=..-|+|+-+.+.+.-++....=+.+...+
T Consensus 149 ~~i~~~f~~~~~~~~~v~v~SFGFKyGiP~DADlVFDVRfLPNP~y~peLRp~tG~d~~V~dYv~~~~e~~ef~~~l~~~ 228 (286)
T COG1660 149 ERIRTRFLGKEERTLTVTVESFGFKYGIPIDADLVFDVRFLPNPHYDPELRPLTGLDKPVADYVMSQPEVEEFYEKLRDL 228 (286)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999970577774699999514555798774357775316997666424757799804899987595799999999999
Q ss_pred HH----HHC-CCCCCEEEEEE
Q ss_conf 98----741-84343799995
Q gi|254780195|r 282 CD----RTL-SLKNEVKVAIV 297 (544)
Q Consensus 282 ~~----~~~-~~~~~V~IaiV 297 (544)
++ .+. +-+.-++|||=
T Consensus 229 l~~~LP~y~~egks~lTIaIG 249 (286)
T COG1660 229 LEFWLPRYEKEGKSYLTIAIG 249 (286)
T ss_pred HHHHHHHHHHCCCEEEEEEEC
T ss_conf 999868998659749999971
No 291
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=64.02 E-value=3.3 Score=22.08 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=13.6
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9993750144444899999999999689828898
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|+..||-.+|+---|.+.- +....+|.+|.-+
T Consensus 5 IltsGGd~pGmNa~Ir~vv--~~a~~~g~~v~Gi 36 (317)
T cd00763 5 VLTSGGDAPGMNAAIRGVV--RSAIAEGLEVYGI 36 (317)
T ss_pred EECCCCCCHHHHHHHHHHH--HHHHHCCCEEEEE
T ss_conf 9957888568899999999--9998789999998
No 292
>PRK06180 short chain dehydrogenase; Provisional
Probab=63.18 E-value=9.9 Score=18.65 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 923999937501444448999999999996898288985
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
.||-++|||+ -||+|+.++ ..|-.+|++|...-
T Consensus 3 ~~KvvlITGa-ssGIG~aiA-----~~l~~~G~~Vi~~~ 35 (277)
T PRK06180 3 SMKTWLITGV-SSGFGRALA-----QAALAAGHRVVGTV 35 (277)
T ss_pred CCCEEEECCC-CCHHHHHHH-----HHHHHCCCEEEEEE
T ss_conf 9988999178-739999999-----99998799999998
No 293
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=62.96 E-value=6.3 Score=20.07 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=32.3
Q ss_pred HCCCCEEEECCCCCCC----CCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2169839973777865----5016888998874047632235576999
Q gi|254780195|r 344 FYGVHGILVPGGFGKR----GSEGKIAAIKFARENKIPFLGICFGMQM 387 (544)
Q Consensus 344 L~~~dGIlVPGGFG~R----GieGkI~Ai~yARen~iP~LGIClGmQ~ 387 (544)
..++|+|.+|||.|.= .-+.--..++.+-+++.|.--+|-|=-.
T Consensus 94 ~~~Ydavf~pGGHG~m~Dl~~~~~l~~ll~~~~~~gk~vaaVCHGpaa 141 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAA 141 (232)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 422228996799753057757999999999999859979998674798
No 294
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=62.88 E-value=8.5 Score=19.13 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 4444489999999999968982889854455
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
-|+||-.+++-+.+-|-..|.||..+-+||-
T Consensus 10 GGIGKSTts~N~aAAla~~GkkVl~vGCDPK 40 (278)
T COG1348 10 GGIGKSTTSQNLAAALAELGKKVLIVGCDPK 40 (278)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 8767312677899999972981799747987
No 295
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.87 E-value=12 Score=17.96 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCEEEECCCCCC-CCCHHHHHCCCCEE-EECCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 416772256567-23445662169839-97377786550168889988740476322355
Q gi|254780195|r 325 VQLSWIDAETLE-KEDPVKHFYGVHGI-LVPGGFGKRGSEGKIAAIKFARENKIPFLGIC 382 (544)
Q Consensus 325 v~i~wIdse~le-~~~~~~~L~~~dGI-lVPGGFG~RGieGkI~Ai~yARen~iP~LGIC 382 (544)
=.+.|||-+.=+ .+.....|+.++.| |+-||-.. |.+=.-.+-...+-..+=.+|-+
T Consensus 318 ~gv~~iNDSKaTN~~a~~~Al~~~~~i~lI~GG~~K-~~d~~~l~~~~~~v~~~~l~G~~ 376 (450)
T PRK01368 318 NNISFYNDSKATNAISAVQSIKALDNIYWLAGGIPK-EGGIEEIKPYFSKIKKAYFYGQA 376 (450)
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEEECCC
T ss_conf 999997178878999999998568973999941577-78879999887438799998978
No 296
>PRK05282 peptidase E; Validated
Probab=62.79 E-value=12 Score=17.95 Aligned_cols=76 Identities=30% Similarity=0.400 Sum_probs=49.3
Q ss_pred CCHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC-----CHHHHHHHHHHHCCCC
Q ss_conf 81346888-88888887873672416772256567234456621698399737778655-----0168889988740476
Q gi|254780195|r 303 LKDAYRSL-IEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG-----SEGKIAAIKFARENKI 376 (544)
Q Consensus 303 l~DaY~Si-~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RG-----ieGkI~Ai~yARen~i 376 (544)
-.|.|... .+||.. .+ +++.=|+. .+++.+.++++|+|.|-||=--+= -.|-+.+++-+-+++.
T Consensus 45 ~~d~Yt~~v~~af~~----lg--~~v~gih~----~~dp~~AI~~Ad~I~vgGGNTF~Ll~~L~~~gl~~~ir~~V~~G~ 114 (233)
T PRK05282 45 SWDDYTAKVAEVLAP----LG--IEVTGIHR----VEDPVAAIENADGIIVGGGNTFQLLKQLYERGLLAPIREAVKNGT 114 (233)
T ss_pred CHHHHHHHHHHHHHH----CC--CEEEEEEC----CCCHHHHHHHCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 889999999999986----69--82887624----589899997499799869739999999998582999999998499
Q ss_pred CHHHHHHHHHHH
Q ss_conf 322355769999
Q gi|254780195|r 377 PFLGICFGMQMA 388 (544)
Q Consensus 377 P~LGIClGmQ~a 388 (544)
||+|.--|--+|
T Consensus 115 pYiG~SAGsnia 126 (233)
T PRK05282 115 PYIGWSAGANVA 126 (233)
T ss_pred CEEEECCHHHHC
T ss_conf 779626415405
No 297
>PRK10416 cell division protein FtsY; Provisional
Probab=62.77 E-value=12 Score=17.95 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=34.5
Q ss_pred EEEECC--CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 399737--778655016888998874047632235576999999998751
Q gi|254780195|r 349 GILVPG--GFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNL 396 (544)
Q Consensus 349 GIlVPG--GFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnv 396 (544)
=||+-| |-|.--.-||+. -.|-.+++.+.|.-|=-|-.|.||.-+-.
T Consensus 297 VIl~vGvNG~GKTTTigKLA-~~~~~~gkkVllaA~DTfRaAAieQL~~w 345 (499)
T PRK10416 297 VILMVGVNGVGKTTTIGKLA-RQFEQQGKSVMLAAGDTFRAAAVEQLQVW 345 (499)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 99997478787898999999-99997799537884066756899999998
No 298
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=62.56 E-value=9.2 Score=18.90 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=35.8
Q ss_pred CCEEEEEEHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHH--HCCCCEEEECCCCCCCCCHH
Q ss_conf 437999952001481346-888888888878736724167722565672344---566--21698399737778655016
Q gi|254780195|r 290 NEVKVAIVGKYIHLKDAY-RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDP---VKH--FYGVHGILVPGGFGKRGSEG 363 (544)
Q Consensus 290 ~~V~IaiVGKY~~l~DaY-~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~---~~~--L~~~dGIlVPGGFG~RGieG 363 (544)
+.-+|+++. ..|+| .+..+++.-+.-.++..+++.--..-.....+. ... -.+.|.|++.+ +|...
T Consensus 137 ~~k~vaii~----~d~~~G~~~~~~~~~~~~~~g~~~~vv~~~~~~~~~~D~s~~l~~i~~~~pd~v~~~~-~~~~~--- 208 (346)
T cd06330 137 KAKTWATIN----PDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSL-WGGDL--- 208 (346)
T ss_pred CCEEEEEEE----CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC-CCHHH---
T ss_conf 980899993----8956779999999999986178965888882589986469999999967999999906-64579---
Q ss_pred HHHHHHHHHCCC----CCHHHHHH
Q ss_conf 888998874047----63223557
Q gi|254780195|r 364 KIAAIKFARENK----IPFLGICF 383 (544)
Q Consensus 364 kI~Ai~yARen~----iP~LGICl 383 (544)
+..++-+|+.+ +++++...
T Consensus 209 -~~~~~q~~~~G~~~~~~~~~~~~ 231 (346)
T cd06330 209 -VTFVRQANARGLFDGTTVVLTLT 231 (346)
T ss_pred -HHHHHHHHHCCCCCCCEEEEECC
T ss_conf -99999999749877974999657
No 299
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=62.50 E-value=12 Score=18.19 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|-|-++||||- ||+|+.++ ..|-..|.+|...
T Consensus 1 mnKvalITG~s-~GIG~aia-----~~la~~Ga~V~i~ 32 (259)
T PRK12384 1 MNKVAVVIGGG-QTLGAFLC-----HGLAEEGYRVAVA 32 (259)
T ss_pred CCCEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 99789994688-68999999-----9999879999999
No 300
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=62.43 E-value=13 Score=17.90 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE-EECCCCCC
Q ss_conf 24312221230689999999987497768579999746754225662003478999999997499876899-92387589
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILL-IRADRDIP 218 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiiv-cRse~~l~ 218 (544)
||==|.||.+-.|-+-++.+........=+ ++ +..+++-..+-.+ .++.|++.+ +|=|+ +.++. +
T Consensus 2 IGvivp~i~n~ff~~~~~~ie~~~~~~Gy~-~~--------i~~s~~d~~~e~~-~i~~l~~~~--vdGiIi~~~~~--~ 67 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYT-LL--------VASSGYDLDREYA-QARKLLERG--VDGLALIGLDH--S 67 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCE-EE--------EEECCCCHHHHHH-HHHHHHHCC--CCEEEECCCCC--C
T ss_conf 899977988989999999999999985999-99--------9958999899999-999999659--99999918999--9
Q ss_pred HHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEH
Q ss_conf 99999998641988677240389862026689887649488999983878888620478999998741843437999952
Q gi|254780195|r 219 EMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVG 298 (544)
Q Consensus 219 ~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVG 298 (544)
++..+.+.. .++|.=.+-...+-+ ........+...=...++.+.. +..-+||+++
T Consensus 68 ~~~~~~l~~-~~iP~V~~~~~~~~~----------------------~~~~V~~Dn~~~~~~~~~~L~~-~G~~~i~~i~ 123 (268)
T cd06273 68 PALLDLLAR-RGVPYVATWNYSPDS----------------------PYPCVGFDNREAGRLAARHLIA-LGHRRIAMIF 123 (268)
T ss_pred HHHHHHHHH-CCCCEEEECCCCCCC----------------------CCCEEEECHHHHHHHHHHHHHH-CCCCCEEEEE
T ss_conf 899999997-599899984657889----------------------9978996779999999999987-2987479994
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 00148134688888888887873672416772256567
Q gi|254780195|r 299 KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLE 336 (544)
Q Consensus 299 KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le 336 (544)
.-....+....-.+++..|-...+..+...|+......
T Consensus 124 ~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~ 161 (268)
T cd06273 124 GPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYS 161 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCC
T ss_conf 68777778999999999999980999871420315789
No 301
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=62.20 E-value=13 Score=17.88 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=32.4
Q ss_pred CCHHHHHH--HHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 44489999--9999999689828898544553348888886443507872798400
Q gi|254780195|r 15 LGKGVAAA--SLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEA 68 (544)
Q Consensus 15 lGKGi~aa--Sig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~Et 68 (544)
+|=|++-- |+.+.|+.+|-.|+..=.|+-..-.+ .|-=.+|.+=.|+-+|++-
T Consensus 5 ~GlG~tG~G~a~a~~L~~~g~~~~~~D~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 59 (476)
T TIGR01087 5 LGLGKTGRGVAVARFLKKKGAEVTVTDDDPEEELER-SKGQLKLSEGVVLYTGGKD 59 (476)
T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC-HHHHCCCCCCEEEEECCCC
T ss_conf 986751078999999997298799998452213431-1331245564135326753
No 302
>PRK05416 hypothetical protein; Provisional
Probab=62.12 E-value=8.3 Score=19.20 Aligned_cols=237 Identities=18% Similarity=0.196 Sum_probs=113.0
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 92399993750144444899999999999689828898544553348888886443507872798400255641133228
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG 80 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~ 80 (544)
+|+.|+||| +||-||-.+. ..|+..||-+. | |+-+.-+..+-. .. .+.+...-+-+| +|
T Consensus 5 ~m~lviVTG--lSGAGKStAl----~~LEDlGy~ci----D---NlP~~Ll~~l~~--~~-~~~~~~~~lAv~-----iD 63 (292)
T PRK05416 5 PMRLVIVTG--LSGAGKSVAL----RALEDLGYYCV----D---NLPPSLLPKLVE--LL-AQSGGIDKVAVV-----ID 63 (292)
T ss_pred CEEEEEEEC--CCCCCHHHHH----HHHHHCCCEEE----C---CCCHHHHHHHHH--HH-HCCCCCCCEEEE-----EE
T ss_conf 868999968--9978799999----99981794478----6---888899999999--97-247887706999-----82
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEC--CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 74775468012589999998885777577402564--6024898999970788987899972431222123068999999
Q gi|254780195|r 81 ISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVI--PHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQ 158 (544)
Q Consensus 81 ~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvI--PHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQ 158 (544)
+. .. .. ... +.+++++=++- |-.+++| --=++++.+|....--.--. . + +..+-.|||++
T Consensus 64 ~R--~~-~~-~~~-l~~~~~~l~~~---~~~~~ilFLdA~~~~LlrRy~eTRR~HPL-----~---~--~~~~L~eaI~~ 125 (292)
T PRK05416 64 VR--SR-PF-FLD-LPEALDELRER---GIDVRVLFLDASDEVLIRRYSETRRRHPL-----S---G--DGGSLLEAIEL 125 (292)
T ss_pred CC--CC-CC-HHH-HHHHHHHHHHC---CCCEEEEEEECCHHHHHHHHHHCCCCCCC-----C---C--CCCCHHHHHHH
T ss_conf 46--65-44-778-99999999857---99559999978869999988750689998-----8---8--99998999999
Q ss_pred HHHHCCCCCCCE-EEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-E-EEEEC---CCCCCHHHHHHHHHHCCCC
Q ss_conf 998749776857-9999746754225662003478999999997499876-8-99923---8758999999998641988
Q gi|254780195|r 159 FGNEFSHRGSKA-LYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPD-I-LLIRA---DRDIPEMERRKISLFCNVP 232 (544)
Q Consensus 159 l~~e~g~~~~n~-~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPD-i-ivcRs---e~~l~~~~k~KIalfc~V~ 232 (544)
=+..+..-.+.. +. |.++ .+...-.+..++++-+..-.+. + |.+-| .+.+|. +
T Consensus 126 Er~~L~~ir~~Ad~v--------IDTS-~l~~~~Lr~~i~~~~~~~~~~~~l~i~i~SFGfK~GiP~------------d 184 (292)
T PRK05416 126 ERELLAPLRERADLV--------IDTS-ELSVHQLRERIRERFGGEGRERELTVTVESFGFKYGIPL------------D 184 (292)
T ss_pred HHHHHHHHHHHCCEE--------EECC-CCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC------------C
T ss_conf 999999999740289--------7479-999999999999986556888855999996024568997------------5
Q ss_pred HHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-----CCCCCCEEEEEE
Q ss_conf 67724038986202668988764948899998387888862047899999874-----184343799995
Q gi|254780195|r 233 MSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRT-----LSLKNEVKVAIV 297 (544)
Q Consensus 233 ~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~-----~~~~~~V~IaiV 297 (544)
.+-||.+.=.+|-|-+|-+=..-|+|+-|.+.+-=......=++.+..+.+.. +.-+.-++|||=
T Consensus 185 AD~VfDvRfLpNP~y~~~Lr~~tG~D~~V~~yv~~~~~~~~f~~~i~~~l~~~lp~y~~egk~yltIaiG 254 (292)
T PRK05416 185 ADLVFDVRFLPNPHYVPELRPLTGLDKPVADYVLAQPEVEEFLDQIRDLLEFWLPGYRREGKSYLTIAIG 254 (292)
T ss_pred CCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 3114551357899886443568999858999997492299999999999999999999849977999975
No 303
>PRK05854 short chain dehydrogenase; Provisional
Probab=61.93 E-value=8.7 Score=19.07 Aligned_cols=29 Identities=38% Similarity=0.432 Sum_probs=16.9
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- ||+|+.++ .-|-.+|.+|.+
T Consensus 15 K~~vITGa~-sGIG~~~a-----~~La~~Ga~Vil 43 (314)
T PRK05854 15 KLAVVTGAS-SGLGFGLA-----RRLAAAGADVIL 43 (314)
T ss_pred CEEEECCCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 989990688-29999999-----999978498999
No 304
>PRK08445 hypothetical protein; Provisional
Probab=61.45 E-value=11 Score=18.47 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=57.1
Q ss_pred HHHHHHHHHCCCCC--CCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 48989999707889--8789997243122212306899999999874977685799997467542256620034789999
Q gi|254780195|r 119 TNEIKEFITQGNED--ADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSV 196 (544)
Q Consensus 119 TdeIk~~I~~~~~~--~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSV 196 (544)
.++|.+++..+.+. .+|+| .||---|..--.|.+.+|.++.+++. +.||-==.+.+.-.-..--.++--..
T Consensus 75 ~eei~~~~~~a~~~g~tEv~i--~GG~~P~l~~~yY~~l~r~ik~~~P~-----i~ihaft~~EI~~~a~~~~~s~~EvL 147 (348)
T PRK08445 75 FEEIDQKIEELLAIGGTQILF--QGGVHPKLKIEWYENLVSHIAQKYPT-----ITIHGFSAVEIDYIAKISKISLKEVL 147 (348)
T ss_pred HHHHHHHHHHHHHCCCEEEEE--ECCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999998649818998--27989999777999999999975775-----42427999999999998198999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 999974998768999238758999999998
Q gi|254780195|r 197 KELQALGVHPDILLIRADRDIPEMERRKIS 226 (544)
Q Consensus 197 k~Lrs~GIqPDiivcRse~~l~~~~k~KIa 226 (544)
+.|+..|+ |-+-.-.-.-+++++|++|+
T Consensus 148 ~~Lk~AGL--~slPGggAEIl~d~VR~~I~ 175 (348)
T PRK08445 148 ERLQAKGL--SSIPGAGAEILSDRVRDIIA 175 (348)
T ss_pred HHHHHHCC--CCCCCCCHHHCCHHHHHHHC
T ss_conf 99998198--87888662634889998748
No 305
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=61.02 E-value=13 Score=17.73 Aligned_cols=73 Identities=29% Similarity=0.346 Sum_probs=48.5
Q ss_pred EHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 520014813468888888888787367241677225656723445662169839973777865501688899887404
Q gi|254780195|r 297 VGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAREN 374 (544)
Q Consensus 297 VGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen 374 (544)
-|||.... -..+|+.-++.+ =+-|.+..++..+-..++.++.+..-.--+.|---|-|-.+-.|..++.|||-
T Consensus 15 Tgky~s~~----~~~~ai~aSg~e-ivTVAlRR~~~~~~~~~~~l~~i~~~~~~iLPNTAGc~tA~EAVr~A~laRE~ 87 (246)
T pfam05690 15 TGKYPSPE----VLKEAIRASGAE-IVTVALRRVNAGQPGGENFLDLLDWLGITLLPNTAGCRTAEEAVRTARLAREA 87 (246)
T ss_pred CCCCCCHH----HHHHHHHHHCCC-EEEEEEEEECCCCCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 38999999----999999996897-79989863058888842588864133866777630118899999999999997
No 306
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=60.83 E-value=13 Score=17.71 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 34789999999974998768999
Q gi|254780195|r 189 TKPTQHSVKELQALGVHPDILLI 211 (544)
Q Consensus 189 TKPTQhSVk~Lrs~GIqPDiivc 211 (544)
|--+..++|.-|..-=.+.||..
T Consensus 118 sEAve~AiklAR~~tgr~~ii~~ 140 (429)
T PRK00062 118 TEATMSAIRLARGFTGRDKIIKF 140 (429)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999761188762111
No 307
>KOG0443 consensus
Probab=60.62 E-value=2.8 Score=22.64 Aligned_cols=228 Identities=16% Similarity=0.185 Sum_probs=132.1
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 99993750144444899999999999689828898544553348888886443507872798400255641133228747
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIST 83 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l 83 (544)
+|.+-|||.||--.=.+-+-.-+|++.+|-++.-+|-=|.. -|-+-||.||+||-|--+= -|.+-+-
T Consensus 118 i~~~~GGv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~------~sS~N~gDvFILD~g~~i~-------qw~G~~S 184 (827)
T KOG0443 118 IIYQEGGVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFS------WSSLNHGDVFILDTGSKIY-------QWNGPNS 184 (827)
T ss_pred CEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEE------HHHCCCCCEEEEECCCCEE-------EECCCCC
T ss_conf 15533651247655555620269999716406888998741------5325777579998687269-------9848865
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCC---HHH-HHHH-H--H-----------------HCCCCCCCEEEEE
Q ss_conf 7546801258999999888577757740256460---248-9899-9--9-----------------7078898789997
Q gi|254780195|r 84 AKADNITAGRIYKNVIDRERRGDYLGTTVQVIPH---VTN-EIKE-F--I-----------------TQGNEDADFVICE 139 (544)
Q Consensus 84 ~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPH---vTd-eIk~-~--I-----------------~~~~~~~Dv~ivE 139 (544)
++.--.-+=.+-+.+-+.||.|. .-|+||-- -+| +-.+ | . ...+..+-.--|+
T Consensus 185 s~~ER~KAl~~~~~IrD~e~~Gr---~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVs 261 (827)
T KOG0443 185 SIQERAKALEVVQYIRDNERDGR---CEVAVVDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVS 261 (827)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCC---EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEEE
T ss_conf 18889999999998641377882---259995274324580178898861686766788896503556401143899996
Q ss_pred C--CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE--EEE--E--CCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 2--4312221230689999999987497768579999746--754--2--256620034789999999974998768999
Q gi|254780195|r 140 I--GGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTL--MPY--I--RSSGELKTKPTQHSVKELQALGVHPDILLI 211 (544)
Q Consensus 140 i--GGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtl--vP~--l--~~~gE~KTKPTQhSVk~Lrs~GIqPDiivc 211 (544)
= ||-.=++.+..= ++|=.++ .+=|||-=.. =.| . .++-+.++..++++.-=||+.+-.|.--|-
T Consensus 262 d~~g~l~v~~va~~~---l~qdlLd-----~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeFlk~k~yP~~TqV~ 333 (827)
T KOG0443 262 DASGGLKVPVVADGP---LTKDLLD-----TEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEFLKKKKYPPNTQVV 333 (827)
T ss_pred CCCCCCCCCCCCCCH---HHHHHHC-----CCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 467870142104405---5687504-----47759993689559999689899899999999999999713699874279
Q ss_pred ECC-CCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHH
Q ss_conf 238-758999999998641988677240389862026689887649488
Q gi|254780195|r 212 RAD-RDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDS 259 (544)
Q Consensus 212 Rse-~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~ 259 (544)
|-- -.=+..-|+.-....+....+. .....-.||.+++.+|+|.
T Consensus 334 rv~EG~Esa~FKq~F~~W~~~~~t~~----~~~~rG~va~l~q~~~~Dv 378 (827)
T KOG0443 334 RVLEGAESAPFKQLFDSWPDKDQTNG----KEEGRGKVAALLQVKGFDV 378 (827)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCC----CCCCCCCCCEEEEECCCCH
T ss_conf 91277765668988750764334466----2014455220133256553
No 308
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=60.38 E-value=13 Score=17.77 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=21.1
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.|-.+|||| -+|+|+.++ .-|-..|++|...
T Consensus 1 M~KvalITGa-s~GIG~a~a-----~~la~~G~~Vv~~ 32 (245)
T PRK12824 1 MKKIALVTGA-KRGIGSAIA-----RELLADGYRVIAT 32 (245)
T ss_pred CCCEEEEECC-CCHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 9859999478-888999999-----9999879989999
No 309
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=60.28 E-value=12 Score=18.07 Aligned_cols=81 Identities=22% Similarity=0.171 Sum_probs=30.9
Q ss_pred EEEEEEHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCEEE-ECCCCCCCCCHHHHH--CCCCEEEECCCCCCCCCHHHHHH
Q ss_conf 7999952001481346-8888888888787367241677-225656723445662--16983997377786550168889
Q gi|254780195|r 292 VKVAIVGKYIHLKDAY-RSLIEALRHSGVSNYTKVQLSW-IDAETLEKEDPVKHF--YGVHGILVPGGFGKRGSEGKIAA 367 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY-~Si~EAL~hA~~~~~~kv~i~w-Idse~le~~~~~~~L--~~~dGIlVPGGFG~RGieGkI~A 367 (544)
-+||++.- .++| .+..++++-+.-+++.++.-.- ....+-+-......+ .+.|.|++.+- |. .-...
T Consensus 141 kkva~v~~----d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~~-~~----~~~~~ 211 (351)
T cd06334 141 KKIALVYH----DSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGW-GV----MNPVA 211 (351)
T ss_pred CEEEEEEC----CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC-CH----HHHHH
T ss_conf 78999956----86276899999999999769979888806999835899999999769899999377-37----89999
Q ss_pred HHHHHCC--CCCHHHH
Q ss_conf 9887404--7632235
Q gi|254780195|r 368 IKFAREN--KIPFLGI 381 (544)
Q Consensus 368 i~yARen--~iP~LGI 381 (544)
+|=||+. +.||+|.
T Consensus 212 ~kqa~~~G~~~~~ig~ 227 (351)
T cd06334 212 IKEAKRVGLDDKFIGN 227 (351)
T ss_pred HHHHHHCCCCCCEEEE
T ss_conf 9999975999857975
No 310
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=59.82 E-value=14 Score=17.59 Aligned_cols=39 Identities=44% Similarity=0.476 Sum_probs=29.1
Q ss_pred EEEECCEECCCCHHHHHHH-HHHHHHHCCCEEEEEEECCCCC
Q ss_conf 9993750144444899999-9999996898288985445533
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAAS-LGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaS-ig~lLk~~g~~v~~~K~DPYlN 45 (544)
|-||| =-|.||-..||. +-.+++..|++|..+--||-.|
T Consensus 3 IaI~G--KGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~n 42 (255)
T COG3640 3 IAITG--KGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSN 42 (255)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99965--99765899999999999864895499994899999
No 311
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=59.81 E-value=14 Score=17.59 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=9.1
Q ss_pred HHH-HHHHHHHCCCCCCEEEE
Q ss_conf 899-99999974998768999
Q gi|254780195|r 192 TQH-SVKELQALGVHPDILLI 211 (544)
Q Consensus 192 TQh-SVk~Lrs~GIqPDiivc 211 (544)
.|. .+..|..-| +|-|+.
T Consensus 45 ~q~~~i~~~i~~~--vdgii~ 63 (275)
T cd06320 45 GQLSIAENMINKG--YKGLLF 63 (275)
T ss_pred HHHHHHHHHHHCC--CCEEEE
T ss_conf 9999999999749--987987
No 312
>pfam03575 Peptidase_S51 Peptidase family S51.
Probab=59.80 E-value=14 Score=17.59 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=43.2
Q ss_pred HHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 736724167722565672344566216983997377--------786550168889988740476322355769999
Q gi|254780195|r 320 SNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--------FGKRGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 320 ~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--------FG~RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
.+++++ .-++-..-+.++..+.+.++|+|.|-|| .-.+|+. .+++-|-.+++||.|.--|--++
T Consensus 11 ~lg~~v--~~l~~~~~~~~~~~~~i~~ad~I~v~GGnt~~ll~~l~~~g~~---~~l~~~~~~G~~~~G~SAGa~i~ 82 (154)
T pfam03575 11 KLGLEV--SGLHLFTPSVEDIEAKILKADVIYVGGGNTFHLLKLLRETGLD---DIIREAVQAGLPYIGWSAGANVA 82 (154)
T ss_pred HCCCEE--EEEECCCCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCH---HHHHHHHHCCCEEEEECHHHHHC
T ss_conf 769977--8986667974729999985999998987599999999986829---99999998597788506046643
No 313
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=59.43 E-value=14 Score=17.55 Aligned_cols=180 Identities=16% Similarity=0.244 Sum_probs=89.2
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 39999375014444489999999999968982889854455334888888644350787279840025564113322874
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
|-|+++. .=.+.||-.++-.+...|+.+|+||...| |-.+-.. +++.+-|..|= -++ ++
T Consensus 2 rsIyIa~-te~~sGKTsVaLGL~~aL~r~g~KVGfFK--PI~q~~~--------------~~~~D~~i~Li-~~~-~~-- 60 (702)
T PRK05632 2 RTIYLAP-TGTGVGLTSVSLGLVRALERKGVKVGFFK--PIAQPRP--------------DDGPDRSTELL-RAR-LG-- 60 (702)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEC--CCCCCCC--------------CCCCCCHHHHH-HHH-CC--
T ss_conf 3699962-79998799999999999983688479983--3554788--------------89976079999-985-59--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHH-HHHHH
Q ss_conf 77546801258999999888577757740256460248989999707889878999724312221230689999-99998
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAI-RQFGN 161 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAi-RQl~~ 161 (544)
++....++--... +.=..|++ .-.-++|.++.++.++++|++||| ||.-.- +.||--.+ .++..
T Consensus 61 L~~~~~i~~s~a~----~ll~~g~~--------D~LlE~IV~~y~~l~~~~DvVLVE--Gs~~~~-~~~~~~~lNa~IAk 125 (702)
T PRK05632 61 LPYEEPLSLSYAE----ELLASGQL--------DVLLEEIVARYHALAKDCDVVLVE--GLVPTR-KHPFALSLNAEIAK 125 (702)
T ss_pred CCCCCCCCHHHHH----HHHHCCCH--------HHHHHHHHHHHHHHHCCCCEEEEE--CCCCCC-CCCCHHHHHHHHHH
T ss_conf 8953360788999----99868998--------999999999999975389989994--888788-98604433599999
Q ss_pred HCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCC-CCEEEEECCCCCCHHHHHHH
Q ss_conf 7497768579999746754225662003478999999997-4998-76899923875899999999
Q gi|254780195|r 162 EFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQA-LGVH-PDILLIRADRDIPEMERRKI 225 (544)
Q Consensus 162 e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs-~GIq-PDiivcRse~~l~~~~k~KI 225 (544)
.+|- .+++|-- +.-.+..|+ .-..+.+..++.. -|.+ --+|+=|...+..+.++..+
T Consensus 126 nLgA---~VILV~~---~~~~s~~el-~d~i~ia~~~f~~~k~~~vlGvIiNrv~~~~~~~i~~~l 184 (702)
T PRK05632 126 NLGA---EVILVSS---GGNDTPEEL-AERIELAARSFGGAKNANILGVIINKVNADEQGRTRPDL 184 (702)
T ss_pred HCCC---CEEEEEC---CCCCCHHHH-HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 7699---8899963---899999999-999999999852306997899998479823555667889
No 314
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=59.29 E-value=13 Score=17.85 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=19.9
Q ss_pred EECCCCHHHHHHHHHHHHHHC--CCEEEEEEE
Q ss_conf 014444489999999999968--982889854
Q gi|254780195|r 11 VVSSLGKGVAAASLGALLQAH--KYKVRVRKL 40 (544)
Q Consensus 11 V~SglGKGi~aaSig~lLk~~--g~~v~~~K~ 40 (544)
|..|=|||=++|.+|..|++. |++|..+-|
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 98269988347999999998438977999999
No 315
>pfam00365 PFK Phosphofructokinase.
Probab=59.29 E-value=4.3 Score=21.27 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHH-------------HHHHHHHHHHHH
Q ss_conf 69839973777865501688899887404763223-------------557699999999
Q gi|254780195|r 346 GVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLG-------------ICFGMQMAVIEA 392 (544)
Q Consensus 346 ~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LG-------------IClGmQ~avIEf 392 (544)
+.|++++=||.|+= -.|.+.+.+.++|..| .|+|++.|+=..
T Consensus 92 ~Id~li~IGGd~S~-----~~a~~L~~~~~i~vigIPkTIDNDl~~td~s~Gf~TA~~~~ 146 (279)
T pfam00365 92 GIDALVVIGGDGSY-----TGADLLTSEHGFNCVGLPGTIDNDICGTDYTIGFDTALNTI 146 (279)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 89979996695689-----99999999729978982034568987776787889999999
No 316
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=59.15 E-value=10 Score=18.63 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHH-HHCCCCCEEEECCCCCCCCCHHHH-HCCCCEE-EECCCCCCCCCHHHHHH---HHHHHCCCCCHH
Q ss_conf 46888888888878-736724167722565672344566-2169839-97377786550168889---988740476322
Q gi|254780195|r 306 AYRSLIEALRHSGV-SNYTKVQLSWIDAETLEKEDPVKH-FYGVHGI-LVPGGFGKRGSEGKIAA---IKFARENKIPFL 379 (544)
Q Consensus 306 aY~Si~EAL~hA~~-~~~~kv~i~wIdse~le~~~~~~~-L~~~dGI-lVPGGFG~RGieGkI~A---i~yARen~iP~L 379 (544)
+|.||.+ + .-.+.+-+.=|.++..-+ =.++. =+++-|+ +|-.||.+-|-||+-+- .+-||+-+++.|
T Consensus 56 ~Y~~~~~------~dP~~VDLAVivvPa~~vp~-v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg~Rl~ 128 (457)
T TIGR02717 56 AYPSVLE------IDPDEVDLAVIVVPAKLVPQ-VVEECGEKGVKGAVVITAGFKEVGEEGAELEQKLVEIARKYGMRLL 128 (457)
T ss_pred CCCCHHH------CCCCCCCEEEEECCHHHHHH-HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 5787111------48997347999728567999-9999861795189997148645316789999999999976788177
Q ss_pred HH-HHHHH
Q ss_conf 35-57699
Q gi|254780195|r 380 GI-CFGMQ 386 (544)
Q Consensus 380 GI-ClGmQ 386 (544)
|= ||||=
T Consensus 129 GPNclG~~ 136 (457)
T TIGR02717 129 GPNCLGII 136 (457)
T ss_pred CCCEEEEE
T ss_conf 67362258
No 317
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=58.97 E-value=13 Score=17.86 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=7.3
Q ss_pred CCCCCCCEEEECCCCC
Q ss_conf 8864435078727984
Q gi|254780195|r 51 MSPVQHGEVFVTDDGG 66 (544)
Q Consensus 51 msP~eHGEVfVt~DG~ 66 (544)
|.|.+|-+.-=.+||.
T Consensus 2 ~~~~~~a~l~~~~dg~ 17 (660)
T PRK01747 2 MDSIQPATLEFNEDGT 17 (660)
T ss_pred CCCCCCCEEEECCCCE
T ss_conf 9876587346888990
No 318
>PRK07894 consensus
Probab=58.97 E-value=14 Score=17.49 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=15.9
Q ss_pred HHHHHHHCCCCCCCEEEEE--CCCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf 9899997078898789997--243122212-30689999999987
Q gi|254780195|r 121 EIKEFITQGNEDADFVICE--IGGTIGDIE-VMPFVEAIRQFGNE 162 (544)
Q Consensus 121 eIk~~I~~~~~~~Dv~ivE--iGGTVGDIE-s~pFlEAiRQl~~e 162 (544)
++.+.+.+..++.--+|+| +.|.=|-+- .--|++++|++-.+
T Consensus 198 ~l~~~l~~~~~~iAaii~EP~iqg~GG~~~p~~~yl~~lr~lc~~ 242 (430)
T PRK07894 198 AFEAQLAQHADELAAVIVEPVVQGAGGMRFHDPRYLRDLRDICDR 242 (430)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999846998669999787438898102899999999998751
No 319
>PRK07326 short chain dehydrogenase; Provisional
Probab=58.57 E-value=13 Score=17.73 Aligned_cols=30 Identities=37% Similarity=0.558 Sum_probs=17.3
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 399993750144444899999999999689828898
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|-++||||- ||+|+.++ ..|-..|++|...
T Consensus 6 KvalITGas-~GIG~aiA-----~~la~~Ga~V~i~ 35 (235)
T PRK07326 6 KAALVTGGS-KGIGFAVA-----EALAAAGYRVAIC 35 (235)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 899993826-79999999-----9999879999999
No 320
>PRK06182 short chain dehydrogenase; Validated
Probab=57.96 E-value=13 Score=17.83 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=23.0
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 2399993750144444899999999999689828898
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
-|.++|||+- ||+|+.++ ..|-.+|++|...
T Consensus 3 ~Kv~lITGas-sGIG~a~a-----~~la~~G~~V~~~ 33 (273)
T PRK06182 3 KKVALVTGAS-SGIGKATA-----RKLIAEGFTVYGA 33 (273)
T ss_pred CCEEEEECCC-HHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 6989990632-09999999-----9999879989999
No 321
>PTZ00301 uridine kinase; Provisional
Probab=57.91 E-value=15 Score=17.37 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=39.1
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHC-C-CEEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf 9999375014444489999999999968-9-82889854455334888888644350
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAH-K-YKVRVRKLDPYLNSDPGTMSPVQHGE 58 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~-g-~~v~~~K~DPYlNvD~GtmsP~eHGE 58 (544)
-|=|+|| ||=||-..|..|-..|..+ | -+|+.+-.|=|-. |..+++.-++|+
T Consensus 5 iIgIaGg--SgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~-d~~~~~~~~~~~ 58 (210)
T PTZ00301 5 VIGISGA--SGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR-DQSNIPESERAY 58 (210)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCHHHCCC
T ss_conf 9999688--76789999999999987614998079983676677-876588656278
No 322
>PRK07024 short chain dehydrogenase; Provisional
Probab=57.70 E-value=14 Score=17.53 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|+|-|+|||+ -||+|+-+ +..|-.+|.+|...
T Consensus 1 M~~~VlITGa-ssGIG~a~-----A~~la~~G~~v~l~ 32 (256)
T PRK07024 1 MPLKVFITGA-SSGIGQAL-----AREYARQGATLGLV 32 (256)
T ss_pred CCCEEEEECC-CHHHHHHH-----HHHHHHCCCEEEEE
T ss_conf 9998999846-02999999-----99999889989999
No 323
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.57 E-value=15 Score=17.33 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 6983997377786550168889988740476322355769999
Q gi|254780195|r 346 GVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 346 ~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
++|||+.+ +.-..-|.+.|++-|-..+++..|+..|...+
T Consensus 186 di~~I~~~---nd~~a~Ga~~Al~~aG~~~v~ivg~d~g~~~~ 225 (294)
T cd06316 186 DLKGIYAV---WDVPAEGVIAALRAAGRDDIKVTTVDLGLNVA 225 (294)
T ss_pred CCCEEEEC---CCHHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf 98889986---86365999999998199983799995896899
No 324
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=57.23 E-value=15 Score=17.29 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 243122212306899999999874977685799997467542256620034789999999974998768999238
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRAD 214 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse 214 (544)
||=+|-++.+-.|-+..+.+....... - +.+++ ..+-+. ..--..-++.|.+-| +|.|++-+-
T Consensus 2 IGv~vp~l~n~ff~~~~~g~e~~A~e~---G--~~v~~---~~~~~d--~~~Q~~~i~~lia~~--vD~Iii~p~ 64 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKEL---G--AEVIV---QNANGD--PAKQISQIENMIAKG--VDVLVIAPV 64 (288)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC---C--CEEEE---ECCCCC--HHHHHHHHHHHHHCC--CCEEEECCC
T ss_conf 899907988979999999999999976---9--98999---718999--999999999999849--989998677
No 325
>PRK12937 short chain dehydrogenase; Provisional
Probab=57.03 E-value=15 Score=17.27 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=14.7
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++|||| -+|+|++|+- -|-..|.+|..
T Consensus 6 K~alVTGg-s~GIG~aia~-----~la~~Ga~V~i 34 (245)
T PRK12937 6 KVAIVTGA-SRGIGAAIAR-----RLAADGFAVAV 34 (245)
T ss_pred CEEEEECC-CCHHHHHHHH-----HHHHCCCEEEE
T ss_conf 88999485-7789999999-----99987999999
No 326
>PRK05872 short chain dehydrogenase; Provisional
Probab=56.85 E-value=14 Score=17.49 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=25.2
Q ss_pred EEEEEEHHHCC---------CCHHHHHHHHHHHHHHHHHCCCCCE---EEECCCCCCCC
Q ss_conf 79999520014---------8134688888888887873672416---77225656723
Q gi|254780195|r 292 VKVAIVGKYIH---------LKDAYRSLIEALRHSGVSNYTKVQL---SWIDAETLEKE 338 (544)
Q Consensus 292 V~IaiVGKY~~---------l~DaY~Si~EAL~hA~~~~~~kv~i---~wIdse~le~~ 338 (544)
|+|+=+.-+.. .+-+-.+..++|..--...+++|+. -||+++-....
T Consensus 137 VnisS~ag~~~~p~~~aY~ASKaav~~~t~sLa~Ela~~GIrVn~V~PG~V~T~m~r~a 195 (296)
T PRK05872 137 LQVSSLAAFAAAPGMAPYCASKAGVEAFANALRLEVAHRGVSVGSAYLSWIDTDLVRDA 195 (296)
T ss_pred EEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 99960543245899807999999999999999998400193899997088977567476
No 327
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=56.53 E-value=16 Score=17.22 Aligned_cols=189 Identities=12% Similarity=0.053 Sum_probs=80.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf 24312221230689999999987497768579999746754225662003478999999997499876899923875899
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPE 219 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~ 219 (544)
||==|-||++-.|-+-++-+..+.-+..=+++++ . +.+.+..-.++.+..|++.++-- +|++.+..+ +
T Consensus 2 IGvivp~i~~~f~~~~~~gie~~~~~~Gy~~~l~--------~-~~~~~~~~~~~~i~~l~~~~vdG-iI~~~~~~~--~ 69 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLS--------M-LAEADEEALRAAVRRLLAQRVDG-VIVNAPLDD--A 69 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE--------E-CCCCCHHHHHHHHHHHHHCCCCE-EEEECCCCC--H
T ss_conf 9999876668799999999999999849979999--------7-99998999999999999649999-999168899--6
Q ss_pred HHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHH
Q ss_conf 99999986419886772403898620266898876494889999838788886204789999987418434379999520
Q gi|254780195|r 220 MERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGK 299 (544)
Q Consensus 220 ~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGK 299 (544)
....+.. ..++| ..+-.+..+. +.......+...=...++.+.. +..-+||++|-
T Consensus 70 ~~~~~~~-~~~iP-----------------vV~i~~~~~~------~~~~V~~Dn~~~~~~a~~~L~~-~G~~~i~~i~~ 124 (264)
T cd01574 70 DAALAAA-PADVP-----------------VVFVDGSPSP------RVSTVSVDQEGGARLATEHLLE-LGHRTIAHVAG 124 (264)
T ss_pred HHHHHHH-HCCCC-----------------EEEECCCCCC------CCCEEEECHHHHHHHHHHHHHH-CCCCCEEECCC
T ss_conf 9999998-58996-----------------8998667999------9988997889999999999998-49982732589
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHH----HH--HCCCCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 014813468888888888787367241677225656723445----66--216983997377786550168889988740
Q gi|254780195|r 300 YIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPV----KH--FYGVHGILVPGGFGKRGSEGKIAAIKFARE 373 (544)
Q Consensus 300 Y~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~----~~--L~~~dGIlVPGGFG~RGieGkI~Ai~yARe 373 (544)
-.+..+ ...-.+++..|...++.+....|.. +.+.+... +. ....|+|++..- .=.+.+++++++
T Consensus 125 ~~~~~~-~~~R~~G~~~al~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~aii~~~D------~~A~g~i~~l~~ 195 (264)
T cd01574 125 PEEWLS-ARARLAGWRAALEAAGIAPPPVLEG--DWSAESGYRAGRELLREGDPTAVFAAND------QMALGVLRALHE 195 (264)
T ss_pred CCCCHH-HHHHHHHHHHHHHHCCCCCCEEEEC--CCCHHHHHHHHHHHHHCCCCCEEEECCH------HHHHHHHHHHHH
T ss_conf 977757-9999999999999869897448866--8997999999999983799968963642------999999999998
Q ss_pred C
Q ss_conf 4
Q gi|254780195|r 374 N 374 (544)
Q Consensus 374 n 374 (544)
+
T Consensus 196 ~ 196 (264)
T cd01574 196 L 196 (264)
T ss_pred H
T ss_conf 2
No 328
>KOG1907 consensus
Probab=56.46 E-value=5.6 Score=20.46 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=49.3
Q ss_pred EEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHH-------HH
Q ss_conf 99995200148134688888888887873672416772256567234456621698399737778655016-------88
Q gi|254780195|r 293 KVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEG-------KI 365 (544)
Q Consensus 293 ~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieG-------kI 365 (544)
++||.-. +-...|.-..-|+..||+..- .|.. ++-|.. .-.|.++-||.-+|||-+-.+-| -|
T Consensus 1060 kVAilRE--eGvNg~rEMa~af~~AgF~~~-DVtm----tDlL~G---~~~ld~frGlaf~GGFSYaDvLgSakGWAasi 1129 (1320)
T KOG1907 1060 KVAILRE--EGVNGDREMAAAFYAAGFETV-DVTM----TDLLAG---RHHLDDFRGLAFCGGFSYADVLGSAKGWAASI 1129 (1320)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHCCCCEE-EEEE----EHHHCC---CEEHHHHCCEEEECCCCHHHHHCCCCCHHHHE
T ss_conf 0688611--055627999999998588136-4462----054357---12586705446525743676514543324430
Q ss_pred HH--------HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89--------9887404763223557699999999875168899
Q gi|254780195|r 366 AA--------IKFARENKIPFLGICFGMQMAVIEAARNLAGIPN 401 (544)
Q Consensus 366 ~A--------i~yARen~iP~LGIClGmQ~avIEfARnvlgl~d 401 (544)
+- -+|-+-...=-||||-|.|+| ..+|+-.
T Consensus 1130 l~ne~v~~QF~~F~~R~DtFslGiCNGCQlm------s~Lg~i~ 1167 (1320)
T KOG1907 1130 LFNESVRSQFEAFFNRQDTFSLGICNGCQLM------SRLGWIG 1167 (1320)
T ss_pred EECHHHHHHHHHHHCCCCCEEEECCCHHHHH------HHHCCCC
T ss_conf 1073377999998537873122024175999------9864557
No 329
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=56.40 E-value=16 Score=17.20 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=27.8
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99993750144444899999999999689828898
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
-|..|| +||-||-..|..+..-|+..|.+|..+
T Consensus 4 viW~TG--LsGsGKTTlA~~l~~~L~~~~~~~~~L 36 (157)
T pfam01583 4 TVWFTG--LSGSGKSTIANALERKLFAQGISVYVL 36 (157)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999889--899999999999999999759977997
No 330
>TIGR00105 L31 ribosomal protein L31; InterPro: IPR002150 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=56.38 E-value=5.6 Score=20.44 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCC-EEEEEEECCCCEEEEEECC
Q ss_conf 8959999869998-6899983899849997248
Q gi|254780195|r 485 CGLKFSGFSVDHA-LPEVVEYINHPWFIGVQYH 516 (544)
Q Consensus 485 ~Gl~~sg~~~d~~-lvEiiEl~~HpffvgvQfH 516 (544)
+++.+.-.+...+ .|||. -..||||.|.|=-
T Consensus 22 ~~~~~~s~~~k~e~~~dic-s~CHPFYtG~~~~ 53 (77)
T TIGR00105 22 NGFEIESTSTKKEINIDIC-SKCHPFYTGKQKI 53 (77)
T ss_pred CCEEEEECCCCCEEEEEEC-CCCCCCEECCEEE
T ss_conf 9778755277731468864-8988942044036
No 331
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.30 E-value=16 Score=17.19 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 448999999999996898288985
Q gi|254780195|r 16 GKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 16 GKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|-|++--|...+|..+|++|+..-
T Consensus 13 GlG~sG~s~~~~L~~~G~~v~~~D 36 (438)
T PRK03806 13 GLGLTGLSCVDFFLARGVTPRVMD 36 (438)
T ss_pred EECHHHHHHHHHHHHCCCEEEEEE
T ss_conf 457888999999997899699998
No 332
>PRK12746 short chain dehydrogenase; Provisional
Probab=56.26 E-value=14 Score=17.59 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999997499
Q gi|254780195|r 193 QHSVKELQALGV 204 (544)
Q Consensus 193 QhSVk~Lrs~GI 204 (544)
+..++++.+.|-
T Consensus 45 ~~~~~~~~~~~~ 56 (254)
T PRK12746 45 DETIREIESNGG 56 (254)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999985599
No 333
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=56.22 E-value=16 Score=17.18 Aligned_cols=14 Identities=0% Similarity=0.043 Sum_probs=7.5
Q ss_pred HHHH-HHHHCCCCCH
Q ss_conf 8899-8874047632
Q gi|254780195|r 365 IAAI-KFARENKIPF 378 (544)
Q Consensus 365 I~Ai-~yARen~iP~ 378 (544)
+..+ +.||+++|++
T Consensus 260 l~~lr~lc~~~giLL 274 (472)
T PRK08742 260 LRRARELCDAHGAFL 274 (472)
T ss_pred HHHHHHHHHHHCCEE
T ss_conf 999999988729668
No 334
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.02 E-value=14 Score=17.68 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=41.2
Q ss_pred EEEEEEHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCE-EEECCCCCCCCCHHHHH--CCCCEEEECCCCCCCCCHHHHHH
Q ss_conf 7999952001481346-88888888887873672416-77225656723445662--16983997377786550168889
Q gi|254780195|r 292 VKVAIVGKYIHLKDAY-RSLIEALRHSGVSNYTKVQL-SWIDAETLEKEDPVKHF--YGVHGILVPGGFGKRGSEGKIAA 367 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY-~Si~EAL~hA~~~~~~kv~i-~wIdse~le~~~~~~~L--~~~dGIlVPGGFG~RGieGkI~A 367 (544)
-+||++.- .|+| .++.++++-+.-..+.++.. .+++...-+=......+ .+.|.|++. ++|. ++ ...
T Consensus 139 kkvai~~~----d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pD~V~~~-~~~~---~~-~~~ 209 (347)
T cd06335 139 KKVALLLD----NTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIV-GNGP---EG-AQI 209 (347)
T ss_pred CEEEEEEE----CCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE-CCCH---HH-HHH
T ss_conf 66999970----763668999999999986598675788407998348999999986699999994-7761---79-999
Q ss_pred HHHHHCCC--CCHHH
Q ss_conf 98874047--63223
Q gi|254780195|r 368 IKFARENK--IPFLG 380 (544)
Q Consensus 368 i~yARen~--iP~LG 380 (544)
++-+|+.+ .|++|
T Consensus 210 ~~q~~~~G~~~~~~g 224 (347)
T cd06335 210 ANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHHHCCCCCCEEE
T ss_conf 999997199976794
No 335
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=55.64 E-value=16 Score=17.12 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 8888888787367241677225656723445662169839973777865501688899887404763223
Q gi|254780195|r 311 IEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 311 ~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LG 380 (544)
.+++...-...+-.++++.++. .+++++..+.++++|=|+..-. ..+-+....++||++++||.=
T Consensus 57 a~~~~~~l~~~np~~~i~~~~~-~i~~~~~~~~~~~~DvVi~~~D----n~~~r~~ln~~c~~~~ip~i~ 121 (134)
T pfam00899 57 AEVAKERLRAINPDVEVEAYPE-RLTPENLEELLKGADLVVDALD----NFAARYLLNDACVKRGIPLIS 121 (134)
T ss_pred HHHHHHHHHHHCCCCEEEEEEC-CCCHHHHHHCCCCCCEEEECCC----CHHHHHHHHHHHHHCCCCEEE
T ss_conf 7999999997789958999925-6797787642644889999989----999999999999985998999
No 336
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=55.10 E-value=17 Score=17.06 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 03478999999997499876899923875899999999864198867724038986202668988764948899998387
Q gi|254780195|r 188 KTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGI 267 (544)
Q Consensus 188 KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l 267 (544)
|--...-.++.|-++ -|+|++|+. .....+.+|-+++|| ||+.- +-++=|
T Consensus 86 kgEsl~DTarvLs~~---~D~Iv~R~~---~~~~~~~~a~~s~vP---VINg~---~~~~HP------------------ 135 (334)
T PRK03515 86 HKESIKDTARVLGRM---YDGIQYRGY---GQEIVETLAEYAGVP---VWNGL---TNEFHP------------------ 135 (334)
T ss_pred CCCCHHHHHHHHHHC---CCEEEEECC---CHHHHHHHHHHCCCC---EEECC---CCCCCC------------------
T ss_conf 898789999999961---887999675---548999999876987---66489---888786------------------
Q ss_pred CCCCCCCHHHHHHHHHHH-CCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 888862047899999874-18434379999520014813468888888888787367241677225656
Q gi|254780195|r 268 ENVSLPQIDNWQTFCDRT-LSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL 335 (544)
Q Consensus 268 ~~~~~~~l~~W~~~~~~~-~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l 335 (544)
.--|.++-.+-++. ...-+.++||+||.. .-++..++.+++...+.++. .+..+.+
T Consensus 136 ----tQaL~Dl~Ti~E~~~~~~l~~lkia~vGD~------~nnv~~Sl~~~~~~~g~~~~--~~~P~~~ 192 (334)
T PRK03515 136 ----TQLLADLLTMQEHLPGKAFNEMTLAYAGDA------RNNMGNSLLEAAALTGLDLR--LVAPKAC 192 (334)
T ss_pred ----HHHHHHHHHHHHHHCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHCCCEEE--EECCCCC
T ss_conf ----799999999999856897566489995787------65458999999985497499--9779756
No 337
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=55.08 E-value=17 Score=17.05 Aligned_cols=12 Identities=25% Similarity=0.399 Sum_probs=6.8
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999997499
Q gi|254780195|r 193 QHSVKELQALGV 204 (544)
Q Consensus 193 QhSVk~Lrs~GI 204 (544)
+..|..|.+-|.
T Consensus 44 ~~~ie~~i~qgv 55 (289)
T cd01540 44 LSAIDNLGAQGA 55 (289)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998589
No 338
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=54.99 E-value=17 Score=17.04 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 22212306899999999874977685799997467542256620034789999999974998768999238
Q gi|254780195|r 144 IGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRAD 214 (544)
Q Consensus 144 VGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse 214 (544)
+-|+.+-.|.+.++-+....... +.-++ +. .+.+.. .--+..++.+.+-+ +|-|++-+.
T Consensus 6 ~p~~~~~f~~~~~~gi~~~a~~~--gy~~~---~~---~~~~~~--~~~~~~i~~~~~~~--vDgiIi~~~ 64 (264)
T cd01537 6 VPDLDNPFFAQVLKGIEEAAKAA--GYQVL---LA---NSQNDA--EKQLSALENLIARG--VDGIIIAPS 64 (264)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHC--CCEEE---EE---ECCCCH--HHHHHHHHHHHHCC--CCEEEEECC
T ss_conf 78897799999999999999986--99899---99---799998--99999999999769--999999679
No 339
>TIGR00147 TIGR00147 conserved hypothetical protein TIGR00147; InterPro: IPR005218 Although the proteins in this group all contain the diacylglycerol kinase catalytic domain, their function is, as yet, unknown..
Probab=54.91 E-value=7.5 Score=19.55 Aligned_cols=97 Identities=24% Similarity=0.261 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 46888888888878736724167722565672344566216983997377786550168889988740476322355769
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGM 385 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGIClGm 385 (544)
+..+|...|.|++.+..+++--+-=.+|+....-......++|-|+|-||=|+ +.--+.|+.-+-...||-|||-=+=
T Consensus 22 ~L~~v~~~L~~~~~e~~~~~T~~~Ghaed~A~~~~~~~~~~~~~vi~~GGDGT--i~ev~naL~~~d~~diP~lg~~P~G 99 (316)
T TIGR00147 22 ALKEVVKKLEKEGVEVRVKLTKKKGHAEDAARAVKEAAEYKVDTVIALGGDGT--IHEVVNALKDLDDKDIPALGILPVG 99 (316)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 79999999985777599985167884668999999987446668999618984--8999888875125778824543576
Q ss_pred HHHHHHHHHHCCCCC-CCCHHHC
Q ss_conf 999999987516889-9970003
Q gi|254780195|r 386 QMAVIEAARNLAGIP-NACSTEF 407 (544)
Q Consensus 386 Q~avIEfARnvlgl~-dAnStEf 407 (544)
+.=.||| ++|++ .+=--+.
T Consensus 100 --t~NDFsr-~lgIp~~~L~ka~ 119 (316)
T TIGR00147 100 --TANDFSR-ALGIPKEDLIKAA 119 (316)
T ss_pred --CCCCHHH-HCCCCHHHHHHHH
T ss_conf --5550333-1387589999999
No 340
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=54.77 E-value=17 Score=17.02 Aligned_cols=32 Identities=25% Similarity=0.079 Sum_probs=24.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 77865501688899887404763223557699
Q gi|254780195|r 355 GFGKRGSEGKIAAIKFARENKIPFLGICFGMQ 386 (544)
Q Consensus 355 GFG~RGieGkI~Ai~yARen~iP~LGIClGmQ 386 (544)
-+|.-.++..+.|+--|+.-++|.=.|+-+++
T Consensus 276 l~G~HNv~NalAAia~a~~lGi~~e~i~~aL~ 307 (459)
T PRK00421 276 LPGRHNVLNALAAIAVALELGIDDEAIRKALA 307 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 86388999999999999984999999999997
No 341
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=54.66 E-value=17 Score=17.02 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 399993750144444899999999999689828898
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|-++||||- ||+|+.++ ..|-..|.+|.+.
T Consensus 7 K~alVTGas-~GIG~aia-----~~l~~~Ga~V~~~ 36 (263)
T PRK06200 7 QVALITGGG-SGIGRALV-----ERFLAEGARVAVL 36 (263)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 889995866-79999999-----9999879999999
No 342
>TIGR02820 formald_GSH S-(hydroxymethyl)glutathione synthase; InterPro: IPR014185 This entry represents S-(hydroxymethyl)glutathione synthase, an enzyme that converts glutathione and formaldehyde into S-(hydroxymethyl)glutathione. The reaction of glutathione and formaldehyde to form S-(hydroxymethyl)glutathione occurs naturally, but this enzyme speeds its formation in some species as part of a pathway of formaldehyde detoxification..
Probab=54.61 E-value=6.8 Score=19.86 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.6
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 899983899849997248773278769884158999999987
Q gi|254780195|r 499 PEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY 540 (544)
Q Consensus 499 vEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~ 540 (544)
---||-.+||||=----|+|+...-....|-|.+|+...++-
T Consensus 100 yG~i~~~~h~f~Gl~f~h~e~~~~~G~~~P~faafvss~ie~ 141 (182)
T TIGR02820 100 YGRIENKDHPFYGLDFIHTELSAEKGWSAPEFAAFVSSIIES 141 (182)
T ss_pred EEEEECCCCCEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 333305777410302221112211268886412222122426
No 343
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=54.51 E-value=17 Score=16.99 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=15.5
Q ss_pred CCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 343799995200148134688888888887873672
Q gi|254780195|r 289 KNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTK 324 (544)
Q Consensus 289 ~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~k 324 (544)
+..-+||+++--....+.-..-.+++..|....+..
T Consensus 114 ~G~~~i~~i~~~~~~~~~~~~R~~Gf~~a~~~~~~~ 149 (266)
T cd06282 114 LGHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLA 149 (266)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 399569999777888868999999999999986999
No 344
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=54.43 E-value=2.5 Score=22.96 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH-----HHHHHHHCCCCCCCCHHHCCCCCCCCEEC-CCHHCCCCCCC
Q ss_conf 7786550168889988740476322355769999-----99998751688999700035666641211-50112346530
Q gi|254780195|r 355 GFGKRGSEGKIAAIKFARENKIPFLGICFGMQMA-----VIEAARNLAGIPNACSTEFSEAGVPVIAL-MSEWMKGDQQE 428 (544)
Q Consensus 355 GFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~a-----vIEfARnvlgl~dAnStEf~~~~~pvI~~-l~e~~~~~~~~ 428 (544)
.+|+-.|+ .+||+|.+--.-=|.--+|.=.+ -||+|+++. +-++|++| .||||.- +-..++-+.-+
T Consensus 123 ~~GTNNvD---~CAR~CH~Ps~~gL~~~~G~GA~s~~~~~ie~a~~iv-i~G~N~~e----sHPvv~~~l~~AKk~nGaK 194 (694)
T TIGR01591 123 VLGTNNVD---NCARVCHEPSVAGLKQTVGIGAMSNTISDIENADLIV-IIGANPAE----SHPVVASKLMRAKKRNGAK 194 (694)
T ss_pred HHHCCCCC---CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCEEE-EECCCCCC----CCHHHHHHHHHHHHHCCCE
T ss_conf 85037745---5454037878999997624553355203443277589-97567655----5436899999998508978
Q ss_pred CCCCCCCCCCEEE----ECCEEEEECCCCHHHHHH--CCCEEEEECCCCCCCCHHHHH
Q ss_conf 0156554674023----165257855870668863--798476602523332788998
Q gi|254780195|r 429 KRLPSDDLGATMR----LGAYDVSLKEETLISRIY--GLDLIPERHRHRYEVNVRYRE 480 (544)
Q Consensus 429 ~~~~~~~~GGTMR----LG~~~~~l~~~S~~~~iY--g~~~I~ERHRHRYEvN~~y~~ 480 (544)
--.-..-+=.||| -+.|-+.|++||=++=+= ..-.|+|+- .+.+|++
T Consensus 195 iiV~DpR~t~taksahi~AD~~i~~k~GTdial~na~a~viI~egL-----~Dk~Fi~ 247 (694)
T TIGR01591 195 IIVIDPRKTETAKSAHIIADLFIPLKPGTDIALLNAVANVIIEEGL-----YDKEFIE 247 (694)
T ss_pred EEEECCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEECCCC-----CCHHHHH
T ss_conf 9997588860232211101106517997089999732002422786-----1668897
No 345
>PRK05541 adenylylsulfate kinase; Provisional
Probab=54.31 E-value=17 Score=16.97 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=28.6
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99993750144444899999999999689828898
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
-|..|| +||-||-..|..+-.-|+.+|.++..+
T Consensus 9 viW~TG--LsGSGKTTiA~~l~~~L~~~g~~~~~L 41 (176)
T PRK05541 9 VIWITG--LAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999789--999989999999999999759977998
No 346
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=54.30 E-value=17 Score=16.97 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=33.7
Q ss_pred HCCCCCEEEECCCCCCCCC----HHHHHC---CCCEEEECCCCCCCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 3672416772256567234----456621---6983997377786550168889988740-4763223557699999999
Q gi|254780195|r 321 NYTKVQLSWIDAETLEKED----PVKHFY---GVHGILVPGGFGKRGSEGKIAAIKFARE-NKIPFLGICFGMQMAVIEA 392 (544)
Q Consensus 321 ~~~kv~i~wIdse~le~~~----~~~~L~---~~dGIlVPGGFG~RGieGkI~Ai~yARe-n~iP~LGIClGmQ~avIEf 392 (544)
..-.+++.++...+-+.+. ..+.|. +++||.+.++ +..|.+.|++=+.. .++.+. +....-..++.
T Consensus 154 ~~p~~~iv~~~~~~~~~~~a~~~~~~lL~~~Pdi~ai~~~~~----~~~ga~~Al~~~g~~~~v~vv--g~D~~~~~~~~ 227 (275)
T cd06307 154 EFPGLRVLETLEGLDDPARAYEATRKLLARHPDLVGIYNAGG----GNRGVIRALREAGRAGKVVFV--GHELTPETRAA 227 (275)
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC----CHHHHHHHHHHCCCCCCEEEE--ECCCCHHHHHH
T ss_conf 588874024661788659999999999974999629998487----169999999973999986999--62799899999
Q ss_pred HHH
Q ss_conf 875
Q gi|254780195|r 393 ARN 395 (544)
Q Consensus 393 ARn 395 (544)
-|+
T Consensus 228 l~~ 230 (275)
T cd06307 228 LRD 230 (275)
T ss_pred HHC
T ss_conf 981
No 347
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=54.30 E-value=14 Score=17.66 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=32.0
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 9993750144444899999999999689828898544553348
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSD 47 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD 47 (544)
|-|+|| ||-||-..|..|...|...|.++..+-.|-|+-.|
T Consensus 2 IgIaG~--SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d 42 (196)
T pfam00485 2 IGVAGS--SGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYD 42 (196)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
T ss_conf 899899--85719999999999966058776412431798604
No 348
>PRK06942 glutamate-1-semialdehyde 2,1-aminomutase; Validated
Probab=54.17 E-value=17 Score=16.95 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 46024898999970788987899972431222123068999999998749776857999974675422566200347899
Q gi|254780195|r 115 IPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQH 194 (544)
Q Consensus 115 IPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQh 194 (544)
-|.|.++|++.+..... .|. -+.+-+|....+....+ ..+.+.|. . +| |--+..
T Consensus 68 ~p~v~~Av~~q~~~~~~--------~~~-----~~~~~~~lAe~L~~~~P-~~~~v~f~--------~-SG---sEA~e~ 121 (425)
T PRK06942 68 HPEVLRAVQRVLADGFS--------FGA-----PTEAEIEIAEEICKLVP-SIEQVRMV--------S-SG---TEATMS 121 (425)
T ss_pred CHHHHHHHHHHHHHCCC--------CCC-----CCHHHHHHHHHHHHHCC-CCCEEEEE--------C-CH---HHHHHH
T ss_conf 79999999999985785--------789-----97899999999998588-98859873--------8-87---999999
Q ss_pred HHHHHHHCCCCCCEEEE
Q ss_conf 99999974998768999
Q gi|254780195|r 195 SVKELQALGVHPDILLI 211 (544)
Q Consensus 195 SVk~Lrs~GIqPDiivc 211 (544)
.+|.-|..-=.+.||..
T Consensus 122 AiklAR~~tgr~~ii~~ 138 (425)
T PRK06942 122 ALRLARGFTGRSRIVKF 138 (425)
T ss_pred HHHHHCCCCCCCCCCEE
T ss_conf 99996103479865312
No 349
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.01 E-value=17 Score=16.94 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 0034789999999974998768
Q gi|254780195|r 187 LKTKPTQHSVKELQALGVHPDI 208 (544)
Q Consensus 187 ~KTKPTQhSVk~Lrs~GIqPDi 208 (544)
.|-+--+--++++|..=++.|+
T Consensus 6 ~~e~~i~~~l~ei~~aLleaDV 27 (270)
T PRK06731 6 EKQESVPFIIQKVIRMLEQNDV 27 (270)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC
T ss_conf 1265099999999999997699
No 350
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=53.93 E-value=17 Score=16.93 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.8
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 923999937501444448999999999996898288985
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
||+.+++. -.=++.||-.++..+.+.|+.+|.+|...|
T Consensus 1 m~~~l~l~-p~~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 1 MSRTLLLI-PTETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred CCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 96149984-268886288999999999997073269984
No 351
>PTZ00287 6-phosphofructokinase; Provisional
Probab=53.92 E-value=6 Score=20.25 Aligned_cols=215 Identities=21% Similarity=0.331 Sum_probs=111.0
Q ss_pred HHHHHHHCCCCHHHEEECCCCC-CHHHHHHHHHHCCHHHHHHHHHCCC--CCCCCC-HH-HHHHHHHHHCCCCCCEEEEE
Q ss_conf 9999864198867724038986-2026689887649488999983878--888620-47-89999987418434379999
Q gi|254780195|r 222 RRKISLFCNVPMSAVIPALDVD-DIYKVPLSYHREGIDSVVLNAFGIE--NVSLPQ-ID-NWQTFCDRTLSLKNEVKVAI 296 (544)
Q Consensus 222 k~KIalfc~V~~~~Vi~~~Dv~-sIY~VPl~l~~q~l~~~I~~~L~l~--~~~~~~-l~-~W~~~~~~~~~~~~~V~Iai 296 (544)
++=.+.+|+....+-|...++. +.|-.|..+. + +.++- .+..|- .. -| -+.++.... +.+-||+
T Consensus 822 ~qi~~~yp~~~~~n~F~~~e~~~~~~~~~~~~~--------l-RIGiv~~grQsPG~~NViw-GL~~~l~~~-~~~~i~F 890 (1439)
T PTZ00287 822 KQILSNYPHMSYENKFQIQEIFHDKYASPISFE--------I-KIGIVFLSRQAPGAMNVLC-GLYHRLKLL-KGVCIAF 890 (1439)
T ss_pred HHHHHCCCCHHHCCCCCHHHHCCCCCCCCCCCC--------E-EEEEEEECCCCCCCCHHHH-HHHHHHHHH-CCEEEEE
T ss_conf 778752752221167654330155445777752--------4-9989984578987312167-689999860-5748998
Q ss_pred E-------HHHCCCCHHHHHHHHHHHHHHHHHCCCCCE-EEECCCCCCCC-CHHHHHCCCCEEEECCCCCCCCCHHHHHH
Q ss_conf 5-------200148134688888888887873672416-77225656723-44566216983997377786550168889
Q gi|254780195|r 297 V-------GKYIHLKDAYRSLIEALRHSGVSNYTKVQL-SWIDAETLEKE-DPVKHFYGVHGILVPGGFGKRGSEGKIAA 367 (544)
Q Consensus 297 V-------GKY~~l~DaY~Si~EAL~hA~~~~~~kv~i-~wIdse~le~~-~~~~~L~~~dGIlVPGGFG~RGieGkI~A 367 (544)
- |||+++.|.-++.. +...|.+.--+..- ..-+.|+++.. .....| +.||++|+||-.. -+++.++|
T Consensus 891 ~G~~Gl~~~k~lei~~~~l~~~--~NQGG~el~grt~~~~l~~~e~~~~~~~Tc~~L-~LDGLViiGg~~s-~T~AA~La 966 (1439)
T PTZ00287 891 YGLYGLLHNKYIIIDDDNIAKH--LNQGGLELTGNSPEHSLFDKENRNKVCETVTKL-QLNGLVMPGSNIT-ITEAALLA 966 (1439)
T ss_pred ECHHHHHCCCEEEEEHHHHHHH--HCCCCEEEECCCHHHHHCCHHHHHHHHHHHHHC-CCCEEEEECCCCC-HHHHHHHH
T ss_conf 5335552485699705776764--327670442364564405888899999999864-8862899578742-13789999
Q ss_pred HHHHHC--------------CCC--CHHHHHHHHHHHHHHHH---HHCCCCCCCCHHH----C---------------CC
Q ss_conf 988740--------------476--32235576999999998---7516889997000----3---------------56
Q gi|254780195|r 368 IKFARE--------------NKI--PFLGICFGMQMAVIEAA---RNLAGIPNACSTE----F---------------SE 409 (544)
Q Consensus 368 i~yARe--------------n~i--P~LGIClGmQ~avIEfA---Rnvlgl~dAnStE----f---------------~~ 409 (544)
=.|++. |++ |+.-+|.||-.+.=-|| -||| .||.|+. | .=
T Consensus 967 EyFl~~~~kT~VIGVP~TidndLk~~~IEtcvGFDT~tKvyasLIGNvl--tDA~Sa~KYwhFIRLMGR~aSHivLECAL 1044 (1439)
T PTZ00287 967 EYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVL--TDAVSMPKYWHFIRLMGRSPSHEVLECAL 1044 (1439)
T ss_pred HHHHHCCCCEEEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHH--HHHHCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999739971599643324787677621011054227889999998888--76412662279862004650477887755
Q ss_pred CCCCCEECCCHHCCCCCCCCCC----------CCCCCCCEEEECCEEEEECCCCHHHHH
Q ss_conf 6664121150112346530015----------655467402316525785587066886
Q gi|254780195|r 410 AGVPVIALMSEWMKGDQQEKRL----------PSDDLGATMRLGAYDVSLKEETLISRI 458 (544)
Q Consensus 410 ~~~pvI~~l~e~~~~~~~~~~~----------~~~~~GGTMRLG~~~~~l~~~S~~~~i 458 (544)
-+||=+.++.|........... ...++|- .|-+.|.|..++..|
T Consensus 1045 QTHPNvViI~EEv~~~k~TL~~Iv~~IaD~VckRAe~gK-----nyGvVLIPEgLI~~I 1098 (1439)
T PTZ00287 1045 QTHPNMVIISEEYGAADKTLWRVVQDIADVVCARADLGK-----NYGTVLIPDALLMHL 1098 (1439)
T ss_pred HCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-----CCCEEEECHHHHHHC
T ss_conf 148968986388554316599999999999998875087-----673798036898767
No 352
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=53.86 E-value=17 Score=16.92 Aligned_cols=106 Identities=27% Similarity=0.403 Sum_probs=68.2
Q ss_pred CCCC-CCEEEEECCC-CCCHHHHHHHHHHC-----CCCHHHEEECCCCCCHHHHHHHHHHCCHHHH--HHHHHCCCCCCC
Q ss_conf 4998-7689992387-58999999998641-----9886772403898620266898876494889--999838788886
Q gi|254780195|r 202 LGVH-PDILLIRADR-DIPEMERRKISLFC-----NVPMSAVIPALDVDDIYKVPLSYHREGIDSV--VLNAFGIENVSL 272 (544)
Q Consensus 202 ~GIq-PDiivcRse~-~l~~~~k~KIalfc-----~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~--I~~~L~l~~~~~ 272 (544)
.|.+ +|+||.|-.. .+-+..-++||-|. +|| +||+|=|=.+ +=| .|.|.+. |++.+|=++
T Consensus 98 ~~y~D~D~iViRH~~~GvCegaar~~ae~~~R~~~~vP--sviNAGDG~~--qHP----TQ~LLDLyTi~~~fGPDn--- 166 (336)
T TIGR00670 98 SAYGDSDAIVIRHPLEGVCEGAARLAAEVSDRLGIEVP--SVINAGDGSG--QHP----TQTLLDLYTIYEEFGPDN--- 166 (336)
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC--EEEECCCCCC--CCC----CHHHHHHHHHHHHHCCCC---
T ss_conf 54047556998358654134688999886311045787--1663687878--797----534788999998718886---
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEECCCCCC
Q ss_conf 2047899999874184343799995200148134688888888887873672-416772256567
Q gi|254780195|r 273 PQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTK-VQLSWIDAETLE 336 (544)
Q Consensus 273 ~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~k-v~i~wIdse~le 336 (544)
|.+ .+ -+-++||+||. ....-+=-|.++||.. .. +++-.|..+.|-
T Consensus 167 P~l-------~~----~~Gl~iA~vGD-lkygRtvhS~~~~L~~------f~~~~v~l~sP~~Lr 213 (336)
T TIGR00670 167 PAL-------ER----LDGLKIALVGD-LKYGRTVHSLIKALAL------FGNAEVYLISPEELR 213 (336)
T ss_pred CCH-------HH----CCCCEEEEEEE-CCCCHHHHHHHHHHHH------HCCCEEEEECCHHHH
T ss_conf 303-------22----28857999843-1202476678899865------189569986772430
No 353
>KOG2968 consensus
Probab=53.80 E-value=11 Score=18.33 Aligned_cols=28 Identities=46% Similarity=0.776 Sum_probs=22.6
Q ss_pred CEE-EECCCCCCCCCH--HHHHHHHHHHCCCCCH
Q ss_conf 839-973777865501--6888998874047632
Q gi|254780195|r 348 HGI-LVPGGFGKRGSE--GKIAAIKFARENKIPF 378 (544)
Q Consensus 348 dGI-lVPGGFG~RGie--GkI~Ai~yARen~iP~ 378 (544)
++| ||-||=|.||+. |.+.|++ |.+||+
T Consensus 838 naIgLVLGGGGARG~ahiGvl~ALe---E~GIPv 868 (1158)
T KOG2968 838 NAIGLVLGGGGARGAAHIGVLQALE---EAGIPV 868 (1158)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHH---HCCCCE
T ss_conf 7479995176400156888999999---739974
No 354
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=53.79 E-value=9.8 Score=18.70 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHH--HCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 7589999999986--41988677240389862026689887649488999983878888620478999998741843437
Q gi|254780195|r 215 RDIPEMERRKISL--FCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEV 292 (544)
Q Consensus 215 ~~l~~~~k~KIal--fc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V 292 (544)
...++...++++. +-+++.+.|+.+.++.-.| +.++.-. .+-+-+. .....+.|+..--....-.+..
T Consensus 51 ~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~-----l~~~~~~---~kv~viG--~~~l~~~l~~~G~~~~~~~~~~ 120 (269)
T COG0647 51 TRSREVVAARLSSLGGVDVTPDDIVTSGDATADY-----LAKQKPG---KKVYVIG--EEGLKEELEGAGFELVDEEEPA 120 (269)
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHEECHHHHHHHH-----HHHHCCC---CEEEEEC--CCCHHHHHHHCCCEEECCCCCC
T ss_conf 8998999999986269988877766389999999-----9853789---8799977--8106899986890894057877
Q ss_pred EEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 99995200148134688888888887873672416772256567234456621698399737778655016888998874
Q gi|254780195|r 293 KVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAR 372 (544)
Q Consensus 293 ~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yAR 372 (544)
.|..|.-+.+-.-.|.-..+|+..... + +.||-+ |+...+..-+| +.|| .-..+.+++.+
T Consensus 121 ~~d~Vv~g~d~~~~~e~l~~a~~~i~~--g----~~fI~t------NpD~~~p~~~g-~~pg------aGai~~~~~~~- 180 (269)
T COG0647 121 RVDAVVVGLDRTLTYEKLAEALLAIAA--G----APFIAT------NPDLTVPTERG-LRPG------AGAIAALLEQA- 180 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC--C----CCEEEE------CCCCCCCCCCC-CCCC------CHHHHHHHHHH-
T ss_conf 521899966888899999999999975--9----968985------89765517998-7668------48999999995-
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 04763-223557699999999875168899
Q gi|254780195|r 373 ENKIP-FLGICFGMQMAVIEAARNLAGIPN 401 (544)
Q Consensus 373 en~iP-~LGIClGmQ~avIEfARnvlgl~d 401 (544)
....| +.|== --...+.|-+.++.+.
T Consensus 181 tg~~~~~~GKP---~~~i~~~al~~~~~~~ 207 (269)
T COG0647 181 TGREPTVIGKP---SPAIYEAALEKLGLDR 207 (269)
T ss_pred HCCCCCCCCCC---CHHHHHHHHHHHCCCC
T ss_conf 09855433798---8999999999817983
No 355
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=53.66 E-value=17 Score=16.90 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2431222123068999999998
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGN 161 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~ 161 (544)
||=-|-||.+-.|-+-++-+..
T Consensus 29 Igvivp~i~npff~~v~~gie~ 50 (295)
T PRK10653 29 IALVVSTLNNPFFVSLKDGAQK 50 (295)
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999489879799999999999
No 356
>KOG3974 consensus
Probab=53.24 E-value=17 Score=17.05 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=73.9
Q ss_pred EEEEEEH---HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC----------------CC----CCHHHHHCCCC
Q ss_conf 7999952---0014813468888888888787367241677225656----------------72----34456621698
Q gi|254780195|r 292 VKVAIVG---KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL----------------EK----EDPVKHFYGVH 348 (544)
Q Consensus 292 V~IaiVG---KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l----------------e~----~~~~~~L~~~d 348 (544)
=||+++| -||.- -|.|-+.|+... ..+.-.+-+++-. .. +...+.|...+
T Consensus 31 GrvgViGGc~eYTGA--PYFaa~sa~~~G-----aDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~~av~~i~k~L~Rlh 103 (306)
T KOG3974 31 GRVGVIGGCLEYTGA--PYFAAISALRVG-----ADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQENAVDIIEKLLQRLH 103 (306)
T ss_pred CCEEEECCCCCCCCC--CHHHHHHHHHHC-----CCEEEEEECHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHEE
T ss_conf 636897462203586--089888898856-----6512355452077787642975064134257763767898774353
Q ss_pred EEEECCCCCCCCC--HHHHHHHHHHHCCCCCHH----HHHHHHHHHH---------------HHHHHHCC--CCCCCCHH
Q ss_conf 3997377786550--168889988740476322----3557699999---------------99987516--88999700
Q gi|254780195|r 349 GILVPGGFGKRGS--EGKIAAIKFARENKIPFL----GICFGMQMAV---------------IEAARNLA--GIPNACST 405 (544)
Q Consensus 349 GIlVPGGFG~RGi--eGkI~Ai~yARen~iP~L----GIClGmQ~av---------------IEfARnvl--gl~dAnSt 405 (544)
.++|-+|.|---. +-+-..++|+|++++|+. |+.|=-|.-. +||-|=.- ..++++..
T Consensus 104 avVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l~~~d~~~ 183 (306)
T KOG3974 104 AVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAELDKVDSHS 183 (306)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCEEEHHHCHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCHH
T ss_conf 89977988898789999999999986489867980773674140624451467403347748999998877603564468
Q ss_pred HCCC---CCCCCEECCCHHCC---CCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHH
Q ss_conf 0356---66641211501123---465300156554674023165257855870668863
Q gi|254780195|r 406 EFSE---AGVPVIALMSEWMK---GDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIY 459 (544)
Q Consensus 406 Ef~~---~~~pvI~~l~e~~~---~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iY 459 (544)
++.. .-.+|+....-+.+ ....+.+ ..+.-|+.-|.|.+- .+..||++--++
T Consensus 184 ~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~-~~s~eGs~kRcGGQG-DiLaGsla~fl~ 241 (306)
T KOG3974 184 QMQHLAAELMNVTVVQKGESDKILSPDSEVR-VCSTEGSLKRCGGQG-DILAGSLATFLS 241 (306)
T ss_pred HHHHHHHHHCCEEEEEECCCCEEECCCCEEE-ECCCCCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 8999998745769997167754658997267-726899765647775-312518999999
No 357
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=53.23 E-value=18 Score=16.85 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=31.9
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 9993750144444899999999999689828898544553
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYL 44 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYl 44 (544)
|.+.| ..|.||-.+.|-++.-++.+|.+|..+-.|-|=
T Consensus 4 i~lvG--ptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R 41 (196)
T pfam00448 4 ILLVG--LQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFR 41 (196)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99989--999988999999999999779928999758776
No 358
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=53.06 E-value=18 Score=16.83 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=39.4
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCC-CEEEECCCCCCCCCHHHHHC--CCCEEEECCCCCCCCCHHHHHHH
Q ss_conf 7999952001481346888888888878736724-16772256567234456621--69839973777865501688899
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKV-QLSWIDAETLEKEDPVKHFY--GVHGILVPGGFGKRGSEGKIAAI 368 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv-~i~wIdse~le~~~~~~~L~--~~dGIlVPGGFG~RGieGkI~Ai 368 (544)
-+|+++.- + .+...+..+++.-+.-..+.++ ...+++...-+-......++ +.|.|++. +++.- -...+
T Consensus 136 ~~vaiv~~--d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~-~~~~~----~~~~~ 207 (298)
T cd06268 136 KKVAIIYD--D-YAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLA-GYGGD----AALFL 207 (298)
T ss_pred CEEEEECC--C-CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEC-CCCHH----HHHHH
T ss_conf 58999778--7-34679999999998997499899999648765777999999997699999991-76267----89999
Q ss_pred HHHHCCC--CCHHHHHHHHH
Q ss_conf 8874047--63223557699
Q gi|254780195|r 369 KFARENK--IPFLGICFGMQ 386 (544)
Q Consensus 369 ~yARen~--iP~LGIClGmQ 386 (544)
+-+|+.+ .|+++.-....
T Consensus 208 ~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 208 KQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHCCCCCEEEEECCCCC
T ss_conf 99998299973999567777
No 359
>PRK08466 consensus
Probab=52.92 E-value=18 Score=16.82 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 46024898999970788987899972431222123068999999998749
Q gi|254780195|r 115 IPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFS 164 (544)
Q Consensus 115 IPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g 164 (544)
-|+|+++|++.+.+...- +....-+.|.+|....+....+
T Consensus 64 ~p~v~~Ai~~Q~~~l~~~----------~~~~~~~~~~~~lae~L~~~~p 103 (430)
T PRK08466 64 NPYINEAIKKQIDELEHV----------ILAGFTHEPIIKLSERLCELTP 103 (430)
T ss_pred CHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHCC
T ss_conf 799999999999657773----------4577587799999999998578
No 360
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=52.73 E-value=18 Score=16.80 Aligned_cols=13 Identities=38% Similarity=0.422 Sum_probs=6.3
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999997499
Q gi|254780195|r 192 TQHSVKELQALGV 204 (544)
Q Consensus 192 TQhSVk~Lrs~GI 204 (544)
+...+++++..||
T Consensus 70 ~~~~~~~a~~agI 82 (272)
T cd06301 70 TAPIVKAANAAGI 82 (272)
T ss_pred HHHHHHHHHHCCC
T ss_conf 1899999998699
No 361
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=52.62 E-value=18 Score=16.78 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.3
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 3999937501444448999999999996898288985
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|-++||||- ||+|+.+ ...|-..|.+|....
T Consensus 9 K~alITG~s-~GIG~ai-----a~~la~~Ga~V~~~~ 39 (253)
T PRK08220 9 KTVWVTGAA-QGIGYAV-----ALAFVEAGAKVIGFD 39 (253)
T ss_pred CEEEEECCC-CHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf 989995885-6899999-----999998799999997
No 362
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=51.80 E-value=19 Score=16.70 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 60248989999707889878999724312221230689999999987497768579999746754225662003478999
Q gi|254780195|r 116 PHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHS 195 (544)
Q Consensus 116 PHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhS 195 (544)
|+|.++|++.+.+..- -|+ -+.+-+|....+...++ ..+.+.| .++.. --+...
T Consensus 72 p~v~~Ai~~q~~~g~~---------~~~----~~~~~~~lAe~l~~~~p-~~~~v~F--------~~sGs----EA~e~A 125 (429)
T PRK12389 72 PHITKAIQTAAENGVL---------YGT----PTELEIEFAKMLKEAIP-SLEKVRF--------VNSGT----EAVMTT 125 (429)
T ss_pred HHHHHHHHHHHHHCCC---------CCC----CCHHHHHHHHHHHHHCC-CCCEEEE--------ECCCH----HHHHHH
T ss_conf 9999999999823885---------779----98999999999998578-8766986--------26842----899999
Q ss_pred HHHHHHCCCCCCEE
Q ss_conf 99999749987689
Q gi|254780195|r 196 VKELQALGVHPDIL 209 (544)
Q Consensus 196 Vk~Lrs~GIqPDii 209 (544)
+|.-|...=.+.||
T Consensus 126 iklAR~~tgr~kii 139 (429)
T PRK12389 126 IRVARAYTGRTKII 139 (429)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99999834999654
No 363
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=51.71 E-value=19 Score=16.69 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=25.3
Q ss_pred CCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 75014444489999999999968982889854455
Q gi|254780195|r 9 GGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 9 GGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
|--+.-+|=|.+--|..+.|..+|.+|+..-.+|-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99799992665109999999977986999838987
No 364
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.24 E-value=17 Score=17.02 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=8.9
Q ss_pred HCCCCCCCCEEECCC
Q ss_conf 577757740256460
Q gi|254780195|r 103 RRGDYLGTTVQVIPH 117 (544)
Q Consensus 103 R~G~ylG~TVQvIPH 117 (544)
.+|.-+|+.|+++..
T Consensus 32 ~~GGi~Gr~velv~~ 46 (334)
T cd06347 32 AAGGVLGKKIELVVE 46 (334)
T ss_pred HHCCCCCEEEEEEEE
T ss_conf 638978857899986
No 365
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=51.07 E-value=19 Score=16.62 Aligned_cols=37 Identities=35% Similarity=0.392 Sum_probs=30.6
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 99937501444448999999999996898288985445533
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLN 45 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlN 45 (544)
|-++|+ ||-||-.+|..|...|+ +.+|+.+.+|.|..
T Consensus 2 IgI~G~--sgsGKTT~a~~L~~~l~--~~~v~~i~~D~yy~ 38 (198)
T cd02023 2 IGIAGG--SGSGKTTVAEEIIEQLG--NPKVVIISQDSYYK 38 (198)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHC--CCCEEEEECCCCCC
T ss_conf 898899--98859999999999809--99858997888887
No 366
>PRK08116 hypothetical protein; Validated
Probab=50.96 E-value=19 Score=16.61 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=20.1
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 79999520014813468888888888787367241677225656
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL 335 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l 335 (544)
.-+-+.|.+ ..--+|++. |+.+..+..+. .+.++...++
T Consensus 109 ~GLll~G~~-GtGKThLa~--aIa~~l~~~g~--~V~~~~~~~l 147 (262)
T PRK08116 109 VGLLLWGSP-GNGKTYLAA--AIANELIEKGV--PVVFVNVPEL 147 (262)
T ss_pred CEEEEECCC-CCCHHHHHH--HHHHHHHHCCC--EEEEEEHHHH
T ss_conf 618998989-998999999--99999998799--3999889999
No 367
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=50.61 E-value=19 Score=16.57 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=29.0
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999937501444448999999999996898288985
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
-|..|| +||-||-..|..+-..|..+|+++..+-
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999646--8888787999999999997597589855
No 368
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.54 E-value=19 Score=16.56 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=37.6
Q ss_pred HHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-CCHHHHH---C-CCCEEEEC
Q ss_conf 99998741843437999952001481346888888888878736724167722565672-3445662---1-69839973
Q gi|254780195|r 279 QTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEK-EDPVKHF---Y-GVHGILVP 353 (544)
Q Consensus 279 ~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~-~~~~~~L---~-~~dGIlVP 353 (544)
...++.... +..-+||++|.-.... +...=.+++..|....+.++.-.|+-...... +...+.+ . .-++|+..
T Consensus 107 ~~a~~~L~~-~Ghr~I~~i~~~~~~~-~~~~R~~Gf~~al~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ptAi~~~ 184 (268)
T cd06277 107 YAATEYLIE-KGHRKIGFVGDPLYSP-SFEERYEGYKKALLDHGIPFNEDYDITEKEEDEEDIGKFIDELKPLPTAFFCS 184 (268)
T ss_pred HHHHHHHHH-CCCCCEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 999999997-0998369972788881-29999999999999859999822466258777999999998478899879968
Q ss_pred CCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 7778655016888998874047
Q gi|254780195|r 354 GGFGKRGSEGKIAAIKFARENK 375 (544)
Q Consensus 354 GGFG~RGieGkI~Ai~yARen~ 375 (544)
. -.-.+.+++++++.+
T Consensus 185 n------D~~A~g~~~~l~~~g 200 (268)
T cd06277 185 N------DGVAFLLIKVLKEMG 200 (268)
T ss_pred C------HHHHHHHHHHHHHCC
T ss_conf 8------599999999999859
No 369
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=50.47 E-value=19 Score=16.55 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2001481346888888888878736724167722565672344566216983997377786550168889988740
Q gi|254780195|r 298 GKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARE 373 (544)
Q Consensus 298 GKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARe 373 (544)
|||-+. .-..+|+.-+|.+ =+-|.+..++..+-.+++.++.+..-.--+.|---|-|-.+-.|..++.|||
T Consensus 92 gky~s~----~~~~~ai~aSgae-ivTVAlRR~~~~~~~~~~~l~~i~~~~~~~LPNTAGc~ta~eAvr~a~lARe 162 (327)
T PRK11840 92 GKYKDF----EETAAAVEASGAE-IVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCFTAEDAVRTLRLARE 162 (327)
T ss_pred CCCCCH----HHHHHHHHHHCCC-EEEEEEEEECCCCCCCCHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 899999----9999999985897-6999997423788896057764180277799856577889999999999998
No 370
>PRK00889 adenylylsulfate kinase; Provisional
Probab=50.34 E-value=19 Score=16.54 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=27.7
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9999375014444489999999999968982889
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
-|+.|| +||-||-..|..+-.-|+..|.++..
T Consensus 6 viWltG--lsgSGKTTia~~l~~~L~~~~~~~~~ 37 (175)
T PRK00889 6 TVWFTG--LSGAGKTTISHALAEKLRARGYPVEV 37 (175)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999889--89999999999999999986996799
No 371
>KOG1252 consensus
Probab=50.18 E-value=14 Score=17.62 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 7899999999749
Q gi|254780195|r 191 PTQHSVKELQALG 203 (544)
Q Consensus 191 PTQhSVk~Lrs~G 203 (544)
=.|--+..||++|
T Consensus 138 ms~Ek~~~l~a~G 150 (362)
T KOG1252 138 MSKEKRILLRALG 150 (362)
T ss_pred HHHHHHHHHHHCC
T ss_conf 5178999999718
No 372
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=49.85 E-value=20 Score=16.49 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=12.3
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99997499876899923875899999999864198
Q gi|254780195|r 197 KELQALGVHPDILLIRADRDIPEMERRKISLFCNV 231 (544)
Q Consensus 197 k~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V 231 (544)
+-|+.-|..|=++.|-+-+|=--+..+-++---+|
T Consensus 119 ~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v 153 (433)
T PRK00771 119 RYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINV 153 (433)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 99997799467850678836899999999986388
No 373
>PRK08339 short chain dehydrogenase; Provisional
Probab=49.71 E-value=20 Score=16.47 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=14.6
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- ||+|+.++ ..|-..|.+|..
T Consensus 9 K~alITG~s-~GIG~aiA-----~~la~~Ga~V~i 37 (263)
T PRK08339 9 KLAFTTASS-KGIGFGVA-----RVLARAGADVII 37 (263)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 989991626-09999999-----999986999999
No 374
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=49.65 E-value=20 Score=16.47 Aligned_cols=176 Identities=18% Similarity=0.104 Sum_probs=94.7
Q ss_pred HHHHHHHHCCCCC----------CEEEEECCCCCCHHHHHHHHHHCCCCHHHEE--ECCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 9999999749987----------6899923875899999999864198867724--038986202668988764948899
Q gi|254780195|r 194 HSVKELQALGVHP----------DILLIRADRDIPEMERRKISLFCNVPMSAVI--PALDVDDIYKVPLSYHREGIDSVV 261 (544)
Q Consensus 194 hSVk~Lrs~GIqP----------DiivcRse~~l~~~~k~KIalfc~V~~~~Vi--~~~Dv~sIY~VPl~l~~q~l~~~I 261 (544)
+-|..|++.|+.+ +.++.|+ +-++.++.+++.--. -.|| .||.|..+...--.+.++|-.-+|
T Consensus 44 ~vv~~L~~~Gv~~v~~~~~v~~~~~ViirA-HGi~~~~~~~~~~~g----~~viDaTCP~V~k~~~~v~~~~~~Gy~ivi 118 (304)
T PRK01045 44 YVVERLKKKGAIFVEELDEVPDGAIVIFSA-HGVSPAVREEAKERG----LTVIDATCPLVTKVHKEVARMSREGYEIIL 118 (304)
T ss_pred HHHHHHHHCCCEEECCCCCCCCCCEEEEEC-CCCCHHHHHHHHHCC----CCEEECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999988699961556689999899977-899899999999659----977705083058999999999858988999
Q ss_pred HHHHCCCCCCCCCHHHHHH----H------HHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 9983878888620478999----9------98741843437999952001481346888888888878736724167722
Q gi|254780195|r 262 LNAFGIENVSLPQIDNWQT----F------CDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWID 331 (544)
Q Consensus 262 ~~~L~l~~~~~~~l~~W~~----~------~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wId 331 (544)
.-+=+-+.. --+..|-. + ++.+ ..+..-+|++|--=|-..+.+..+.++|+--.-+....+.=.+.+
T Consensus 119 iG~~~HpEv--~gi~g~~~~~~~vv~~~~d~~~l-~~~~~~ki~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~ 195 (304)
T PRK01045 119 IGHKGHPEV--EGTMGQAPDGVYLVESPEDVAKL-DVKDPDKLALVTQTTLSVDDTAEIIAALKARFPEIRGPRKDDICY 195 (304)
T ss_pred ECCCCCHHH--HHHHHHCCCCEEEECCHHHHHHC-CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 817898899--96997579973998869999757-768997189997255659999999999997683652573235207
Q ss_pred CCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 5656723445662169839973777865501688899887404763223
Q gi|254780195|r 332 AETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 332 se~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LG 380 (544)
+..--.+.+.+.-+.+|.++|-||+-+-..- .-.+-|++.+.|.+=
T Consensus 196 aT~~RQ~a~~~La~~vD~miVvGg~nSsNT~---~L~~i~~~~~~~t~~ 241 (304)
T PRK01045 196 ATQNRQEAVKELAKQVDLVIVVGSKNSSNSN---RLREVAERAGAPAYL 241 (304)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHH---HHHHHHHHHCCCEEE
T ss_conf 7899999999877418889997688996489---999999987999599
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.49 E-value=20 Score=16.45 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 377786550168889988740476322355769999999987
Q gi|254780195|r 353 PGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAAR 394 (544)
Q Consensus 353 PGGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfAR 394 (544)
|-|-|.--+-||+ |.+|.++++.+.|.-|==+..+.+|.-+
T Consensus 214 vnGvGKTTTiAKL-A~~l~~~gkkV~LVAaDTFRaAAiEQLk 254 (407)
T PRK12726 214 QTGVGKTTTLVKL-GWQLLKQNRTVGFITTDTFRSGAVEQFQ 254 (407)
T ss_pred CCCCCHHHHHHHH-HHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 9989789999999-9999977991799970667788999999
No 376
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=49.15 E-value=20 Score=16.41 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 56620034789999999974998768999238758999999998641988677240389862026689887649488999
Q gi|254780195|r 183 SSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVL 262 (544)
Q Consensus 183 ~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~ 262 (544)
.+.-.|--+..-.++.|-++ -|.|+.|+.. ....+.+|-+++|| ||+.- +-.+=| -|
T Consensus 81 ~s~~~kgEsi~DT~~vls~~---~D~iv~R~~~---~~~~~~~a~~s~vP---ViNg~---~~~~HP----tQ------- 137 (332)
T PRK04284 81 GSQMGKKETTKDTARVLGGM---YDGIEYRGFS---QRTVETLAEYSGVP---VWNGL---TDEDHP----TQ------- 137 (332)
T ss_pred CCCCCCCCCHHHHHHHHHHH---CCEEEEECCC---HHHHHHHHHHCCCC---EEECC---CCCCCC----HH-------
T ss_conf 45278877899999999962---8889995346---18999999867999---88689---987772----68-------
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 9838788886204789999987418434379999520014813468888888888787367241677225656
Q gi|254780195|r 263 NAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL 335 (544)
Q Consensus 263 ~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l 335 (544)
-|.++-.+.+....+-+.++|++||.- . -++..|+.+++...+.++ ..+-.+.+
T Consensus 138 -----------~L~D~~Ti~E~~~~~~~~lkva~vGD~---~---nnVa~S~~~~~~~~g~~~--~~~~P~~~ 191 (332)
T PRK04284 138 -----------VLADFLTAKEVLKKPYADINFTYVGDG---R---NNVANALMQGAAIMGMNF--HLVCPKEL 191 (332)
T ss_pred -----------HHHHHHHHHHHHCCCCCCCEEEEECCC---C---CCHHHHHHHHHHHCCCCE--EEECCCCC
T ss_conf -----------998889999971366567289996798---8---651157999999759937--99758555
No 377
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=49.03 E-value=15 Score=17.34 Aligned_cols=16 Identities=13% Similarity=0.553 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHCCCC
Q ss_conf 0478999998741843
Q gi|254780195|r 274 QIDNWQTFCDRTLSLK 289 (544)
Q Consensus 274 ~l~~W~~~~~~~~~~~ 289 (544)
...+|.+++++..+.+
T Consensus 208 ~v~d~~~l~~kt~~sR 223 (432)
T COG4109 208 TVEDWLDLVEKTGHSR 223 (432)
T ss_pred CHHHHHHHHHHCCCCC
T ss_conf 0999999999719873
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=48.96 E-value=20 Score=16.39 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=30.0
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 144444899999999999689828898544553
Q gi|254780195|r 12 VSSLGKGVAAASLGALLQAHKYKVRVRKLDPYL 44 (544)
Q Consensus 12 ~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYl 44 (544)
..|.||-.+.|-++.-++.+|.+|..+-.|-|=
T Consensus 8 ptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R 40 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999988999999999999769928999748875
No 379
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.62 E-value=21 Score=16.36 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCCEEEEEC
Q ss_conf 243122212306899999999874977685799997467542256620034789-99999997499876899923
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQ-HSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQ-hSVk~Lrs~GIqPDiivcRs 213 (544)
||=.|-||.+-.|-+.++-+.....+...++.++ . ..+..+.. .| .-+..|.+-|+ |.|++=.
T Consensus 2 IGvivp~i~npff~~~~~gie~~a~~~g~~~~v~---~---~~~~~d~~---~q~~~i~~li~~~v--DgIii~~ 65 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT---V---VSADYDLN---KQVSQIDNFIAAKV--DLILLNA 65 (271)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEE---E---ECCCCCHH---HHHHHHHHHHHCCC--CEEEEEC
T ss_conf 8999489989899999999999999719976999---8---07988999---99999999997499--8899934
No 380
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.25 E-value=21 Score=16.32 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 4448999999999996898288985445
Q gi|254780195|r 15 LGKGVAAASLGALLQAHKYKVRVRKLDP 42 (544)
Q Consensus 15 lGKGi~aaSig~lLk~~g~~v~~~K~DP 42 (544)
+|-|++--|+.++|+++|.+|+..--++
T Consensus 23 ~GlG~SG~s~a~~L~~~G~~v~~~D~~~ 50 (476)
T PRK00141 23 AGAGVSGLGIAKMLSELGCDVVVADDNE 50 (476)
T ss_pred EEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9227889999999997899799998998
No 381
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=48.19 E-value=21 Score=16.31 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=17.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 3999937501444448999999999996898288
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVR 36 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~ 36 (544)
|-++|||| -||+|+.++- -|-..|.+|.
T Consensus 9 KvalVTGa-s~GIG~aia~-----~la~~Ga~Vv 36 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMAI-----GLAKAGADIV 36 (251)
T ss_pred CEEEEECC-CCHHHHHHHH-----HHHHCCCEEE
T ss_conf 98999486-7689999999-----9998699999
No 382
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.08 E-value=21 Score=16.30 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 14444489999999999968982889854455
Q gi|254780195|r 12 VSSLGKGVAAASLGALLQAHKYKVRVRKLDPY 43 (544)
Q Consensus 12 ~SglGKGi~aaSig~lLk~~g~~v~~~K~DPY 43 (544)
|=|+| .+--|..++|+.+|.+|+.---.+.
T Consensus 5 V~GlG--~sG~s~a~~L~~~G~~v~~~D~~~~ 34 (459)
T PRK02705 5 VIGLG--RSGIAAARLLKAQGWEVVVSERNDS 34 (459)
T ss_pred EEEEC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99548--9999999999978995999989899
No 383
>PRK06194 hypothetical protein; Provisional
Probab=48.06 E-value=21 Score=16.30 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH
Q ss_conf 47899999999749987689992387589999
Q gi|254780195|r 190 KPTQHSVKELQALGVHPDILLIRADRDIPEME 221 (544)
Q Consensus 190 KPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~ 221 (544)
...+..+++|++.|.+ ++.++++-.=.+++
T Consensus 41 ~~l~~~~~~l~~~g~~--v~~~~~DVsd~~~v 70 (301)
T PRK06194 41 DALDRAVAELRAQGAE--VLGVRTDVSDAAQV 70 (301)
T ss_pred HHHHHHHHHHHHCCCE--EEEEECCCCCHHHH
T ss_conf 9999999999845984--99996568999999
No 384
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=48.04 E-value=9.1 Score=18.92 Aligned_cols=52 Identities=40% Similarity=0.498 Sum_probs=31.9
Q ss_pred EEEEEEC-CEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 3999937-50144444899999999999689828898544553348888886443507872798400255
Q gi|254780195|r 3 KYIFITG-GVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLD 71 (544)
Q Consensus 3 KyI~VtG-GV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlD 71 (544)
+=|+||| |++|.+|.|+-+-- -.|+.-+ +=..+|.-.++|+..+++ +|.|+|
T Consensus 6 rRVVITGiG~VsplG~g~~~~w-~aL~~G~----------~~~~~d~~~~~~~~~~~~------~~~d~~ 58 (397)
T PRK06519 6 NDVVITGIGLVSSLGEGLDAHW-AALAAAR----------VQPNVDTETFAPYPVHPL------PEIDWD 58 (397)
T ss_pred CCEEEECHHHCCCCCCCHHHHH-HHHHCCC----------CCCCCCHHHCCCCCCEEC------CCCCHH
T ss_conf 9789908044068828999999-9987799----------925427432587542167------888834
No 385
>KOG0389 consensus
Probab=47.89 E-value=21 Score=16.28 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=64.7
Q ss_pred CCCCEEEC-------------CCHH----HHHHHHHHCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 77402564-------------6024----898999970788-98789997243122212306899999999874977685
Q gi|254780195|r 108 LGTTVQVI-------------PHVT----NEIKEFITQGNE-DADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSK 169 (544)
Q Consensus 108 lG~TVQvI-------------PHvT----deIk~~I~~~~~-~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n 169 (544)
||||+||| ||.. .-+-+|+++.++ -|-+.+---=|+ + .-=|++|..+-++...
T Consensus 429 LGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS------q---~ER~~lR~~i~~~~~~ 499 (941)
T KOG0389 429 LGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS------Q---DERRELRERIKKNKDD 499 (941)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCC------H---HHHHHHHHHHHCCCCC
T ss_conf 763348999999999729999837992031688899999975975287741576------8---9999999998616888
Q ss_pred EEEEEEEEEEEECC-------------------CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 79999746754225-------------------66200347899999999749987689992387589999999986419
Q gi|254780195|r 170 ALYIHLTLMPYIRS-------------------SGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCN 230 (544)
Q Consensus 170 ~~fiHvtlvP~l~~-------------------~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~ 230 (544)
+-.+-+||=..... ..=+|-+-++. -+.|++ |..++=+.=+-.||..+.++=|||.|.
T Consensus 500 ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR-y~~LM~--I~An~RlLLTGTPLQNNL~ELiSLL~F 576 (941)
T KOG0389 500 YDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER-YKHLMS--INANFRLLLTGTPLQNNLKELISLLAF 576 (941)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHCCCHHH-HHHHCC--CCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 52899872110388677899986666679961326542133498-887506--465535885187420129999999999
Q ss_pred CCH
Q ss_conf 886
Q gi|254780195|r 231 VPM 233 (544)
Q Consensus 231 V~~ 233 (544)
|=+
T Consensus 577 vlP 579 (941)
T KOG0389 577 VLP 579 (941)
T ss_pred HHH
T ss_conf 745
No 386
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=47.78 E-value=21 Score=16.27 Aligned_cols=101 Identities=29% Similarity=0.362 Sum_probs=60.3
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99937501444448999999999996898288985445533488888864435078727984002556411332287477
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTA 84 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~ 84 (544)
|=||| .-|.||-....+++..|..+|.+|..+-+||- ||+-.|-. ||.--|..+....
T Consensus 52 iGiTG--~pG~GKStli~~l~~~~~~~g~~v~vlavDPs--------S~~sgGai------------LGDr~Rm~~~~~~ 109 (325)
T PRK09435 52 IGITG--VPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS--------STRTGGSI------------LGDKTRMERLSRH 109 (325)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC--------CCCCCCCH------------HHHHHHHHHHCCC
T ss_conf 97427--99986889999999999967985899997899--------99888610------------1038888761479
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 54680125899999988857775774025646024898999970788987899972431222
Q gi|254780195|r 85 KADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGD 146 (544)
Q Consensus 85 ~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGD 146 (544)
..-.|-+ --..+.||. +..-|.+...-...+ +.|++||| |||=
T Consensus 110 ~~~fiRs----------~~srg~lgg----~~~~~~~~~~~~~a~--g~d~i~iE---TvGv 152 (325)
T PRK09435 110 PNAFIRP----------SPSSGTLGG----VARKTRETMLLCEAA--GFDVILVE---TVGV 152 (325)
T ss_pred CCEEEEE----------CCCCCCCCC----CCHHHHHHHHHHHHC--CCCEEEEE---ECCC
T ss_conf 9848840----------677888677----335499999999977--99989997---0677
No 387
>KOG4093 consensus
Probab=47.77 E-value=8.1 Score=19.29 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88740476322355769999999987516889997
Q gi|254780195|r 369 KFARENKIPFLGICFGMQMAVIEAARNLAGIPNAC 403 (544)
Q Consensus 369 ~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAn 403 (544)
.|.-||-|=. --||...||.|||+-|+.|++
T Consensus 110 ey~~e~Tifv----pRiqflAiEiARNreGlNd~~ 140 (144)
T KOG4093 110 EYSQETTIFV----PRIQFLAIEIARNREGLNDWI 140 (144)
T ss_pred CCCCCCEEEE----EEHHHHHHHHHHHHCCCHHHH
T ss_conf 0288752887----421567999875020000666
No 388
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.71 E-value=21 Score=16.26 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 6620034789999999974998768999238758999999998641988
Q gi|254780195|r 184 SGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVP 232 (544)
Q Consensus 184 ~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~ 232 (544)
-|-=||--+--=-+-|+.-|-.|=++.|-.-+|=--+..+-++.-.+|+
T Consensus 109 QGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 6797486899999999974994589850567868999999999860985
No 389
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=47.45 E-value=17 Score=16.96 Aligned_cols=67 Identities=15% Similarity=0.026 Sum_probs=38.4
Q ss_pred EEECCCHHHHHHHHHHCCCCCCCEEEE---ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 256460248989999707889878999---72431222123068999999998749776857999974675422566
Q gi|254780195|r 112 VQVIPHVTNEIKEFITQGNEDADFVIC---EIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSG 185 (544)
Q Consensus 112 VQvIPHvTdeIk~~I~~~~~~~Dv~iv---EiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~g 185 (544)
+-|+|||..--.-+ +....++|.+|+ |-||-+|++-+++.++.+-.--....- + -+-.=+|.+.+.|
T Consensus 104 ikvi~~V~Sv~lAk-~~~~~GaDavIaEG~EaGGHiG~~~Tm~Lvpqvvdav~~~~~-~-----~~~~~IPViaAGG 173 (320)
T cd04743 104 ISTYLHVPSPGLLK-QFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANG-P-----DKAGKIHLLFAGG 173 (320)
T ss_pred CEEEEECCCHHHHH-HHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCC-C-----CCCCCCCEEEECC
T ss_conf 97999779999999-999849999999574576776753013405989889860356-6-----5567874899767
No 390
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=47.23 E-value=22 Score=16.21 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9239999375014444489999999999968982889854
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
|++ |.|.| =||+-.|++.=|..+|++|+.+-=
T Consensus 1 m~~-V~VIG-------aGivGlstA~~La~~G~~VtviDr 32 (410)
T PRK12409 1 MSH-IAVIG-------AGITGVTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred CCC-EEEEC-------CHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 995-99989-------839999999999978991899969
No 391
>KOG1015 consensus
Probab=47.17 E-value=22 Score=16.21 Aligned_cols=103 Identities=16% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCCCCEEECCCH-------------------HHHHHHHHH-------CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 577402564602-------------------489899997-------078898789997243122212306899999999
Q gi|254780195|r 107 YLGTTVQVIPHV-------------------TNEIKEFIT-------QGNEDADFVICEIGGTIGDIEVMPFVEAIRQFG 160 (544)
Q Consensus 107 ylG~TVQvIPHv-------------------TdeIk~~I~-------~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~ 160 (544)
=||||.|||--. -|-+.+|.. ...+.-++-|-|| +||-++|--.|+= ...+
T Consensus 706 GLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL-~~vkr~e~R~~~L--~~W~ 782 (1567)
T KOG1015 706 GLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSEL-ATVKRPEERSYML--QRWQ 782 (1567)
T ss_pred CCCCEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEHH-HHCCCHHHHHHHH--HHHH
T ss_conf 456400146788899874204785689972359988999999986124222466212021-2026748899999--9997
Q ss_pred HHCCCCCCCEEEEEEEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf 8749776857999974675422566200347-8999999997499876899923875899
Q gi|254780195|r 161 NEFSHRGSKALYIHLTLMPYIRSSGELKTKP-TQHSVKELQALGVHPDILLIRADRDIPE 219 (544)
Q Consensus 161 ~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKP-TQhSVk~Lrs~GIqPDiivcRse~~l~~ 219 (544)
.+ .-||.|--+.--.|....-.|.+- .-.-.+.|..- -|||+||---+-|-.
T Consensus 783 ~~-----ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdp--GPD~vVCDE~HiLKN 835 (1567)
T KOG1015 783 ED-----GGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDP--GPDFVVCDEGHILKN 835 (1567)
T ss_pred HC-----CCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCEEEECCHHHHCC
T ss_conf 52-----977997368888775145603567999999860578--997687242122135
No 392
>PRK03846 adenylylsulfate kinase; Provisional
Probab=47.17 E-value=22 Score=16.20 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=27.0
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99993750144444899999999999689828898
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
-|+.|| +||-||-..|..+-.-|+..|.++..+
T Consensus 26 viWlTG--LSGSGKTTlA~~L~~~L~~~~~~~~~L 58 (198)
T PRK03846 26 VLWFTG--LSGSGKSTVAGALEEALHELGVHTYLL 58 (198)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999879--999988999999999999759975997
No 393
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=47.16 E-value=22 Score=16.20 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=19.1
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++|||| -||+|+.|+ ..|-..|.+|..
T Consensus 10 K~alVTG~-s~GIG~aiA-----~~la~~Ga~Vvi 38 (251)
T PRK07523 10 RRALITGS-SQGIGYALA-----KGLAQAGAEVIL 38 (251)
T ss_pred CEEEEECC-CCHHHHHHH-----HHHHHCCCEEEE
T ss_conf 98999583-669999999-----999987999999
No 394
>PRK08226 short chain dehydrogenase; Provisional
Probab=47.13 E-value=22 Score=16.20 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=10.2
Q ss_pred CEEEEE-EHHHCCC--CHHHHHHHH
Q ss_conf 379999-5200148--134688888
Q gi|254780195|r 291 EVKVAI-VGKYIHL--KDAYRSLIE 312 (544)
Q Consensus 291 ~V~Iai-VGKY~~l--~DaY~Si~E 312 (544)
-|+|+= .|.+... .-+|-+-.-
T Consensus 136 IInisS~~g~~~~~~~~~~Y~asKa 160 (263)
T PRK08226 136 IVMMSSVTGDMVADPGETAYALTKA 160 (263)
T ss_pred EEEEEEHHHCCCCCCCCHHHHHHHH
T ss_conf 9999765330448997388999999
No 395
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=46.95 E-value=14 Score=17.56 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=26.6
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 77786550168889988740476322355769999
Q gi|254780195|r 354 GGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 354 GGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
..||.-|.-.|+.|++.|.++++|.. ||=|..--
T Consensus 202 s~~gtGGM~sKl~AA~~a~~~Gi~~~-I~~g~~~~ 235 (251)
T cd04242 202 SSVGTGGMRTKLKAARIATEAGIPVV-IANGRKPD 235 (251)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEE-EEECCCCC
T ss_conf 88873873899999999998899699-98289977
No 396
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=46.87 E-value=22 Score=16.17 Aligned_cols=110 Identities=19% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 20478999998741843437999952001481346888888888878736724167722565672344566216983997
Q gi|254780195|r 273 PQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILV 352 (544)
Q Consensus 273 ~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlV 352 (544)
.+...++.+++... +...+|.+|.-=..-++.|.. ....+.-.+++++...+.-. +-++.+..+.|.++|+|++
T Consensus 13 ~~~~~~~~~i~~~~--~~~~~i~~iptAs~~~~~~~~---~~~~~~~~lG~~~~~l~~~~-~a~~~~~~~~l~~ad~i~~ 86 (210)
T cd03129 13 HARPILQDFLARAG--GAGARVLFIPTASGDRDEYGE---EYRAAFERLGVEVVHLLLID-TANDPDVVARLLEADGIFV 86 (210)
T ss_pred CCHHHHHHHHHHCC--CCCCEEEEEECCCCCCHHHHH---HHHHHHHHCCCEEEEEECCC-CCCCHHHHHHHHHCCEEEE
T ss_conf 72799999999739--999649999489888089999---99999997499488751225-6787169999971999998
Q ss_pred CCCCCCCCC---H--HHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 377786550---1--68889988740476322355769999
Q gi|254780195|r 353 PGGFGKRGS---E--GKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 353 PGGFG~RGi---e--GkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
.||=-.|-. . +-..+++-+-.+++++-|.--|.-+|
T Consensus 87 ~GG~~~~~~~~~~~t~~~~~l~~~~~~G~v~~G~SAGa~~~ 127 (210)
T cd03129 87 GGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVM 127 (210)
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECHHHHHC
T ss_conf 89889999999974889999999998499099735578862
No 397
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=46.79 E-value=21 Score=16.25 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=9.9
Q ss_pred HCCCCCCCCEEECCC
Q ss_conf 577757740256460
Q gi|254780195|r 103 RRGDYLGTTVQVIPH 117 (544)
Q Consensus 103 R~G~ylG~TVQvIPH 117 (544)
.+|.-+|+.|++|--
T Consensus 32 ~~GGi~G~~velv~~ 46 (333)
T cd06331 32 AAGGILGRPLELVVE 46 (333)
T ss_pred HHCCCCCEEEEEEEE
T ss_conf 718978868899997
No 398
>PRK08177 short chain dehydrogenase; Provisional
Probab=46.70 E-value=22 Score=16.16 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=21.6
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 3999937501444448999999999996898288985
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|-++|||+- ||+|+.++- .|-.+|++|...-
T Consensus 2 K~~lITGas-~GIG~aia~-----~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGAS-RGLGLGLVD-----RLLERGWQVTATV 32 (225)
T ss_pred CEEEECCCC-HHHHHHHHH-----HHHHCCCEEEEEE
T ss_conf 989992734-299999999-----9998869999997
No 399
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=46.53 E-value=22 Score=16.14 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=24.1
Q ss_pred HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 3672416772256567234456621698399737778655016888998874047632
Q gi|254780195|r 321 NYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPF 378 (544)
Q Consensus 321 ~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~ 378 (544)
.+-.+++.- ..+.+++++ .+.++++|=|+- +.-..+-....-++||++++||
T Consensus 87 lNp~v~i~~-~~~~~~~~~-~~~i~~~D~Vvd----~~dn~~~r~~iN~~c~~~~ipl 138 (197)
T cd01492 87 LNPRVKVSV-DTDDISEKP-EEFFSQFDVVVA----TELSRAELVKINELCRKLGVKF 138 (197)
T ss_pred HCCCCEEEE-EECCCCHHH-HHHHHCCCEEEE----CCCCHHHHHHHHHHHHHCCCCE
T ss_conf 389972898-704585768-999828999999----9999999999999999819978
No 400
>PRK06179 short chain dehydrogenase; Provisional
Probab=46.50 E-value=22 Score=16.13 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=23.3
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 399993750144444899999999999689828898
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|.++|||+- ||+|+.++ ..|-.+|++|...
T Consensus 5 KvalITGas-sGIG~a~A-----~~la~~G~~V~~~ 34 (270)
T PRK06179 5 KVALVTGAS-SGIGRATA-----EALARAGYRVFGT 34 (270)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 589990724-69999999-----9999879999999
No 401
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=46.39 E-value=22 Score=16.12 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 03478999999997499876899923875
Q gi|254780195|r 188 KTKPTQHSVKELQALGVHPDILLIRADRD 216 (544)
Q Consensus 188 KTKPTQhSVk~Lrs~GIqPDiivcRse~~ 216 (544)
-.+-.+.++++.+... .|-+|.||+.+.
T Consensus 209 d~~~i~~al~~ak~~~-~P~lI~~kT~~G 236 (576)
T PRK05444 209 DLDALVETLKNAKDLK-GPVLLHVVTKKG 236 (576)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEEEEECC
T ss_conf 9999999999888669-998999997056
No 402
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.16 E-value=22 Score=16.10 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44899999999999689828898
Q gi|254780195|r 16 GKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 16 GKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|=|.+--|..++|+.+|++|+..
T Consensus 21 GlG~sG~s~a~~L~~~G~~v~~~ 43 (481)
T PRK01438 21 GLGVSGFPAADALHELGASVTVV 43 (481)
T ss_pred EECHHHHHHHHHHHHCCCEEEEE
T ss_conf 57588999999999679989999
No 403
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=46.08 E-value=23 Score=16.09 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf 4444489999999999968--9828898544553348888886443507872798400255641133228
Q gi|254780195|r 13 SSLGKGVAAASLGALLQAH--KYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG 80 (544)
Q Consensus 13 SglGKGi~aaSig~lLk~~--g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~ 80 (544)
-|+||--+|||+|.=|=.. |.||-.+==||==|+ +.|| +..|||=+|=+-
T Consensus 6 GGVGKTt~SaAtA~~lAe~qPGkkvLl~STDPAHsL----------~D~F--------~~e~G~~~~kv~ 57 (330)
T TIGR00345 6 GGVGKTTISAATAIRLAEQQPGKKVLLVSTDPAHSL----------SDVF--------EQELGHEPTKVK 57 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHH----------HHHH--------HHHHCCCCCEEE
T ss_conf 882388899999999985189977999840860027----------8861--------132177730320
No 404
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=46.06 E-value=23 Score=16.09 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCCCCEEEEEC
Q ss_conf 99999997499876899923
Q gi|254780195|r 194 HSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 194 hSVk~Lrs~GIqPDiivcRs 213 (544)
..+..|.+-| +|.|+.-.
T Consensus 51 ~~ie~~I~qg--vD~Iiv~p 68 (272)
T cd06300 51 ADIRNLIAQG--VDAIIINP 68 (272)
T ss_pred HHHHHHHHCC--CCEEEEEC
T ss_conf 9999999859--99999978
No 405
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=46.04 E-value=11 Score=18.36 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 0168889988740476322355
Q gi|254780195|r 361 SEGKIAAIKFARENKIPFLGIC 382 (544)
Q Consensus 361 ieGkI~Ai~yARen~iP~LGIC 382 (544)
.+--..|.+|||+++|||=-|=
T Consensus 365 f~~l~~t~~yc~~~~IPFP~i~ 386 (505)
T cd07200 365 FKELLLAEKWARMNGLPFPPID 386 (505)
T ss_pred HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 0999999999997599899889
No 406
>pfam11308 DUF3111 Protein of unknown function (DUF3111). Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed. Currently no function is known.
Probab=45.88 E-value=1.3 Score=24.95 Aligned_cols=74 Identities=30% Similarity=0.445 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHCCCCCCEEEE-EEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 0478999998741843437999-952001481346888888888878736724167722565672344566216983997
Q gi|254780195|r 274 QIDNWQTFCDRTLSLKNEVKVA-IVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILV 352 (544)
Q Consensus 274 ~l~~W~~~~~~~~~~~~~V~Ia-iVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlV 352 (544)
.++.|..-.-.....+..++-| +||-| |||-|+++. .++-.|+.|.--+.--........||-.+
T Consensus 25 Gld~w~~~~~~P~~v~~A~~~GYLig~Y----DSY~s~~~~----------g~~d~w~TA~~~~~l~~~~~I~~~dG~~~ 90 (348)
T pfam11308 25 GLDNWTAGFYQPEAVKAAKKAGYLVGPY----DSYNTAIEP----------GVNDSWLTAQLPAELYEEAAITKADGEKK 90 (348)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEEC----CCHHHHCCC----------CCCCCCCCCCCCHHHCCCCEEECCCCCCC
T ss_conf 7876443346989999999769745302----122333058----------88866512007854544561784699685
Q ss_pred CCCCCCCCCH
Q ss_conf 3777865501
Q gi|254780195|r 353 PGGFGKRGSE 362 (544)
Q Consensus 353 PGGFG~RGie 362 (544)
| ||..+|--
T Consensus 91 ~-GF~~~G~y 99 (348)
T pfam11308 91 P-GFLGRGHY 99 (348)
T ss_pred C-CCCCCCCC
T ss_conf 4-60678744
No 407
>pfam08497 Radical_SAM_N Radical SAM N-terminal. This domain tends to occur to the N-terminus of the pfam04055 domain in hypothetical bacterial proteins.
Probab=45.75 E-value=22 Score=16.19 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=12.7
Q ss_pred HHHHHHHCCC-CCCEEEEECCC
Q ss_conf 9999997499-87689992387
Q gi|254780195|r 195 SVKELQALGV-HPDILLIRADR 215 (544)
Q Consensus 195 SVk~Lrs~GI-qPDiivcRse~ 215 (544)
|-+|+.+.|. |+|+|+.-.+-
T Consensus 5 t~~em~~rGWd~lDvilVtGDA 26 (298)
T pfam08497 5 SREEMKARGWDQLDVILVTGDA 26 (298)
T ss_pred CHHHHHHCCCCCCCEEEEECCC
T ss_conf 9999997299757889994762
No 408
>PRK06057 short chain dehydrogenase; Provisional
Probab=45.67 E-value=23 Score=16.05 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=17.6
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 399993750144444899999999999689828898
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|-++||||- ||+|+.++ ..|-..|.+|.+.
T Consensus 8 KvalVTGas-~GIG~aia-----~~la~~Ga~Vvi~ 37 (255)
T PRK06057 8 RVAVITGGA-SGIGLATA-----RRMRAEGATVVVG 37 (255)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 989996848-88999999-----9999869989999
No 409
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=45.64 E-value=23 Score=16.04 Aligned_cols=104 Identities=27% Similarity=0.382 Sum_probs=61.4
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99937501444448999999999996898288985445533488888864435078727984002556411332287477
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTA 84 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~ 84 (544)
|=+|| .-|.||-....+++..+..+|.+|..+-+||- ||+-.|-. ||.--|..+....
T Consensus 32 iGiTG--~PGaGKStli~~l~~~~~~~g~~vaVlAvDPS--------S~~sgGai------------LGDr~RM~~~~~~ 89 (267)
T pfam03308 32 VGITG--VPGAGKSTLIEALGMELRRRGHRVAVLAVDPS--------SPFTGGSI------------LGDRTRMQRLAVD 89 (267)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC--------CCCCCCCC------------CCCHHHHHHHCCC
T ss_conf 98768--99887999999999999968986899997899--------98888630------------0107777650589
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 54680125899999988857775774025646024898999970788987899972431222123
Q gi|254780195|r 85 KADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEV 149 (544)
Q Consensus 85 ~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs 149 (544)
..-.|-+ =-....||. +..-|-+...-...+ +.|++||| |||==.|
T Consensus 90 ~~vfiRs----------~~srg~lGG----ls~~t~~~i~lleaa--GfD~IivE---TVGVGQs 135 (267)
T pfam03308 90 PGAFIRS----------SPSRGALGG----LSRATREAILLLDAA--GFDVIIIE---TVGVGQS 135 (267)
T ss_pred CCEEEEE----------CCCCCCCCC----CCHHHHHHHHHHHHC--CCCEEEEE---CCCCCCC
T ss_conf 9858864----------577888887----147699999999977--99999992---4777753
No 410
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=45.45 E-value=23 Score=16.03 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.3
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 2306899999999
Q gi|254780195|r 148 EVMPFVEAIRQFG 160 (544)
Q Consensus 148 Es~pFlEAiRQl~ 160 (544)
-+.|.+|..+.|.
T Consensus 88 ~~~~~~elAe~L~ 100 (467)
T PRK07030 88 SHQPVIELSERLV 100 (467)
T ss_pred CCHHHHHHHHHHH
T ss_conf 8779999999999
No 411
>PRK08703 short chain dehydrogenase; Provisional
Probab=45.27 E-value=23 Score=16.01 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=4.6
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999749
Q gi|254780195|r 193 QHSVKELQALG 203 (544)
Q Consensus 193 QhSVk~Lrs~G 203 (544)
+....++++.|
T Consensus 44 ~~~~~~l~~~~ 54 (239)
T PRK08703 44 EKVYDAIVEAG 54 (239)
T ss_pred HHHHHHHHHCC
T ss_conf 99999999737
No 412
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.15 E-value=23 Score=15.99 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC---CHHH-HHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 68888888888787367241677225656723---4456-621698399737778655016888998874047632235
Q gi|254780195|r 307 YRSLIEALRHSGVSNYTKVQLSWIDAETLEKE---DPVK-HFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGI 381 (544)
Q Consensus 307 Y~Si~EAL~hA~~~~~~kv~i~wIdse~le~~---~~~~-~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LGI 381 (544)
-.+|.+..+-|+-.++.++.+ +|+..-... ...+ .-.+.|||++ +||-...+. .+++-|++.+||..|.
T Consensus 15 ~~~v~~G~~eaA~~lGw~v~v--~D~~g~~~~~~~~i~~ai~~k~D~Iii-~~~D~~~~~---~~l~~A~~agIPvv~~ 87 (280)
T cd06315 15 ILGVGEGVREAAKAIGWNLRI--LDGRGSEAGQAAALNQAIALKPDGIVL-GGVDAAELQ---AELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHHHHHHHCCCEEEE--ECCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCHHHHH---HHHHHHHHCCCCEEEE
T ss_conf 154988999999975987999--889999999999999999639999999-982978878---9999999879978962
No 413
>PRK07774 short chain dehydrogenase; Provisional
Probab=45.02 E-value=23 Score=15.98 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=12.2
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- +|+|+.++ ..|-..|.+|.+
T Consensus 7 K~alVTGgs-~GiG~aia-----~~la~~Ga~V~i 35 (250)
T PRK07774 7 KVAIVTGAA-GGIGQAYA-----EALAREGASVVV 35 (250)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 889997976-88999999-----999986999999
No 414
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=44.89 E-value=22 Score=16.10 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 3068999999998749776857999974675422566200347899999999749
Q gi|254780195|r 149 VMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALG 203 (544)
Q Consensus 149 s~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~G 203 (544)
+...+.|+++....- ..+.+|+ -+.+|-=||--.|--..+.++.|
T Consensus 22 N~~~~~~l~~~~~~~---~~~~l~i-------~G~~GsGKTHLl~a~~~~~~~~~ 66 (226)
T TIGR03420 22 NAELLAALRQLAAGK---GDRFLYL-------WGESGSGKSHLLQAACAAAEERG 66 (226)
T ss_pred HHHHHHHHHHHHHCC---CCCEEEE-------ECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 799999999876466---8886999-------89999988999999999986269
No 415
>pfam00202 Aminotran_3 Aminotransferase class-III.
Probab=44.57 E-value=24 Score=15.93 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHCC
Q ss_conf 60248989999707
Q gi|254780195|r 116 PHVTNEIKEFITQG 129 (544)
Q Consensus 116 PHvTdeIk~~I~~~ 129 (544)
|.|.++|++-+...
T Consensus 35 p~i~~Ai~~q~~~~ 48 (338)
T pfam00202 35 PKIVQAVKEQADKL 48 (338)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999538
No 416
>PRK09044 consensus
Probab=44.47 E-value=24 Score=15.92 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 46024898999970788987899972431222123068999999998749
Q gi|254780195|r 115 IPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFS 164 (544)
Q Consensus 115 IPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g 164 (544)
-|.|+++|++-+.+... + +.+.+-+.|-.+..+.+..-.+
T Consensus 60 ~p~v~~Ai~~Q~~~l~~---~-------~~~~~~~~~~~~la~~L~~~~p 99 (418)
T PRK09044 60 HPHIAEAVREQLDRMPH---V-------MFGGLAHEPAYRLASRLAAILP 99 (418)
T ss_pred CHHHHHHHHHHHHHCCC---C-------CCCCCCCHHHHHHHHHHHHHCC
T ss_conf 89999999999975888---3-------4587467799999999998578
No 417
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=44.39 E-value=24 Score=15.91 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHH-HHHHHHHHHHHCC-CCCEEEECC-CCCCCCCHHHHHCCCCE
Q ss_conf 20478999998741843437999952001481346888-8888888787367-241677225-65672344566216983
Q gi|254780195|r 273 PQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSL-IEALRHSGVSNYT-KVQLSWIDA-ETLEKEDPVKHFYGVHG 349 (544)
Q Consensus 273 ~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si-~EAL~hA~~~~~~-kv~i~wIds-e~le~~~~~~~L~~~dG 349 (544)
.+-.-|+.|++... +..-+|.++.-=..-++.|... .+++. .++. .+.+..+++ ++-++....+.|.++|+
T Consensus 13 ~~~~i~~~~i~~ag--~~~~ri~viptAs~~~~~~~~~~~~~f~----~lG~~~v~~l~~~~r~~a~~~~~~~~l~~a~~ 86 (217)
T cd03145 13 DNRAILQRFVARAG--GAGARIVVIPAASEEPAEVGEEYRDVFE----RLGAREVEVLVIDSREAANDPEVVARLRDADG 86 (217)
T ss_pred CCHHHHHHHHHHCC--CCCCEEEEECCCCCCHHHHHHHHHHHHH----HCCCCCEEEEECCCHHHCCCHHHHHHHHCCCE
T ss_conf 86499999999709--9987599985887885999999999999----83999505982268354489899999964998
Q ss_pred EEECCCCCCCCC-----HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 997377786550-----168889988740476322355769999
Q gi|254780195|r 350 ILVPGGFGKRGS-----EGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 350 IlVPGGFG~RGi-----eGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
|.+-||=-.|-. .+-..+++.+-.++.|+-|.--|.-+|
T Consensus 87 i~~~GG~q~~~~~~~~~t~~~~~l~~~~~~G~vi~G~SAGA~~~ 130 (217)
T cd03145 87 IFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVM 130 (217)
T ss_pred EEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCHHHHHH
T ss_conf 99938999999999963969999999998699488411788874
No 418
>PRK05642 DNA replication initiation factor; Validated
Probab=44.16 E-value=16 Score=17.22 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 23068999999998749776857999974675422566200347899999999749987
Q gi|254780195|r 148 EVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHP 206 (544)
Q Consensus 148 Es~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqP 206 (544)
.+.--+.+++++...-+....|.+|+ -+.+|-=||--.|-...+..+.|-.-
T Consensus 25 ~N~~a~~~~~~l~~~~~~~~~~~l~i-------~G~~G~GKTHLL~A~~~~~~~~~~~~ 76 (234)
T PRK05642 25 ANAAALGYVERLCEADAGWTESLIYL-------WGKDGVGRSHLLQAACLRFEQRGEPA 76 (234)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEE-------ECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75999999999876067877883899-------88999988999999999998079967
No 419
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=43.84 E-value=13 Score=17.81 Aligned_cols=294 Identities=20% Similarity=0.277 Sum_probs=135.6
Q ss_pred CCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCC---------------CH-HHHHHHHHHHCCCCCCE
Q ss_conf 198867724038986202668988764948899998387888862---------------04-78999998741843437
Q gi|254780195|r 229 CNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLP---------------QI-DNWQTFCDRTLSLKNEV 292 (544)
Q Consensus 229 c~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~---------------~l-~~W~~~~~~~~~~~~~V 292 (544)
=|=+.-+||++.|- ..-+|=-.|++++|+..|...=.....+.. .| +-|.+....+...++.=
T Consensus 1009 F~EELGaV~qV~~~-~~~~v~~~~~~~~L~~~~~~~~~~~~~~~i~i~~~~~~~~s~~~~~L~~~W~ets~Q~qRLrdnp 1087 (1401)
T TIGR01735 1009 FNEELGAVIQVAEE-DLAAVLELLRAAGLTALILGIGTPTDEPSIEISVNGATLLSEKRSELRDIWEETSFQLQRLRDNP 1087 (1401)
T ss_pred HCCCCCCEEEECCC-HHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 02254536883241-17899999986487133313140156777898608846502568999998888999999832373
Q ss_pred EEE---EEHHHCCCCHHH-----HHHHHHHHHHHHHHCCCCCEEEECCCCCCCC------------CHH-----------
Q ss_conf 999---952001481346-----8888888888787367241677225656723------------445-----------
Q gi|254780195|r 293 KVA---IVGKYIHLKDAY-----RSLIEALRHSGVSNYTKVQLSWIDAETLEKE------------DPV----------- 341 (544)
Q Consensus 293 ~Ia---iVGKY~~l~DaY-----~Si~EAL~hA~~~~~~kv~i~wIdse~le~~------------~~~----------- 341 (544)
.=| .=++-..-.-+| .++.+-..-..+..+.+.+|--+--+-.+.+ +++
T Consensus 1088 ~Ca~~E~~~~~~~~~p~l~~~l~fd~~~d~~~P~I~~G~~PkvAILREqG~NG~~EMAaAF~rAGF~~~DVhmsDL~~Gr 1167 (1401)
T TIGR01735 1088 ECAEEEFEGLKDRDEPGLKLSLTFDVNEDIAAPFINKGVKPKVAILREQGVNGDIEMAAAFDRAGFEAIDVHMSDLLAGR 1167 (1401)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEEHCCCC
T ss_conf 36999999840578886202347886555568622368986178885068670068999997458957852310010056
Q ss_pred HHHCCCCEEEECCCCCCC-------CCHHHHH---------HHHHHHCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCCCH
Q ss_conf 662169839973777865-------5016888---------99887404763223557699999-999875168899970
Q gi|254780195|r 342 KHFYGVHGILVPGGFGKR-------GSEGKIA---------AIKFARENKIPFLGICFGMQMAV-IEAARNLAGIPNACS 404 (544)
Q Consensus 342 ~~L~~~dGIlVPGGFG~R-------GieGkI~---------Ai~yARen~iP~LGIClGmQ~av-IEfARnvlgl~dAnS 404 (544)
-.|..+.|++--|||-+- ||---|+ +.=|.|. +-=.||||=|.|||. . +-=|-|-+.-.+
T Consensus 1168 v~Ld~F~glvacGGFSYgDVLGag~GWA~SIlF~~~~~~qF~~Ff~rp-dtf~LGVCNGCQm~snL--~~~iPG~~~wp~ 1244 (1401)
T TIGR01735 1168 VHLDEFRGLVACGGFSYGDVLGAGKGWAKSILFNPRLRDQFAAFFKRP-DTFSLGVCNGCQMLSNL--LEIIPGTENWPH 1244 (1401)
T ss_pred CCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC-CCEEECCCHHHHHHHHH--HHCCCCCCCCCC
T ss_conf 652245558997175302130112446776640577899999860588-84230321078999976--434787888884
Q ss_pred HHCC-CCCCCC---E-E-CCCHHCCCCCCCCCCC------CCCCCCEEEECCEE------EEECCCCHHHHHHCCCEEEE
Q ss_conf 0035-666641---2-1-1501123465300156------55467402316525------78558706688637984766
Q gi|254780195|r 405 TEFS-EAGVPV---I-A-LMSEWMKGDQQEKRLP------SDDLGATMRLGAYD------VSLKEETLISRIYGLDLIPE 466 (544)
Q Consensus 405 tEf~-~~~~pv---I-~-~l~e~~~~~~~~~~~~------~~~~GGTMRLG~~~------~~l~~~S~~~~iYg~~~I~E 466 (544)
.|+. ++..|- + . -++|++.....-.+.. -..|-|+ ||+-+- +.+...-....+--+..|.=
T Consensus 1245 ~e~GPD~~~~RPGlFvrn~LSerFEaR~a~V~v~~s~Si~L~GM~GS-~LPv~~aHGEG~a~F~~~~~~~~~~~~gl~aL 1323 (1401)
T TIGR01735 1245 LEMGPDSSQARPGLFVRNRLSERFEARVALVEVKESPSIMLKGMAGS-RLPVAVAHGEGRAEFESEELLAEADASGLVAL 1323 (1401)
T ss_pred CCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEECCCCEEEECCCCCC-CCCEEEEECCCEEECCCHHHHHHHHHHCCEEE
T ss_conf 12278888888751332023520132126546556650011377888-37737750662564188789887755195577
Q ss_pred ECC-------CCCCCCHHHHHHHHHCCCEEEEEC-CCCCEEEEEEECCCC--EEEEEE--CCCC-CCCCCCCCCHHHHHH
Q ss_conf 025-------233327889989997895999986-999868999838998--499972--4877-327876988415899
Q gi|254780195|r 467 RHR-------HRYEVNVRYREKLEGCGLKFSGFS-VDHALPEVVEYINHP--WFIGVQ--YHPE-LKSRPLDPHPLFVSF 533 (544)
Q Consensus 467 RHR-------HRYEvN~~y~~~le~~Gl~~sg~~-~d~~lvEiiEl~~Hp--ffvgvQ--fHPE-f~Srp~~phPLF~~f 533 (544)
|+= -.|=+||. ....=|+|.+ .|| ++-|+ -=|| -|-.+| |+|| |...-.-|+|=..=|
T Consensus 1324 ry~D~~G~~Te~YPlNPN------GSP~GIagits~DG-R~~im--MPHPER~~R~~q~sW~P~~W~e~~~GPSpWlrLF 1394 (1401)
T TIGR01735 1324 RYVDDDGNVTEAYPLNPN------GSPEGIAGITSADG-RVTIM--MPHPERVFRAVQNSWRPEDWDELDTGPSPWLRLF 1394 (1401)
T ss_pred EEECCCCCHHHCCCCCCC------CCCCCCCCCCCCCC-CEEEE--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 867575573311868888------77443020118887-58966--6889721124668778778863457787678987
Q ss_pred HHH
Q ss_conf 999
Q gi|254780195|r 534 IQA 536 (544)
Q Consensus 534 i~A 536 (544)
.-|
T Consensus 1395 ~NA 1397 (1401)
T TIGR01735 1395 RNA 1397 (1401)
T ss_pred HHH
T ss_conf 887
No 420
>PRK08862 short chain dehydrogenase; Provisional
Probab=43.81 E-value=24 Score=15.85 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=5.3
Q ss_pred HCCCCCCEEEE
Q ss_conf 74998768999
Q gi|254780195|r 201 ALGVHPDILLI 211 (544)
Q Consensus 201 s~GIqPDiivc 211 (544)
.+|-.+|+||-
T Consensus 79 ~~g~~iDvLVN 89 (227)
T PRK08862 79 QFNRAPDVLVN 89 (227)
T ss_pred HHCCCCEEEEE
T ss_conf 95899749985
No 421
>PRK08267 short chain dehydrogenase; Provisional
Probab=43.76 E-value=24 Score=15.85 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=22.8
Q ss_pred CEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 239999375014444489999999999968982889854
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
||-++|||| -||+|+.++ ..|-..|++|...-.
T Consensus 1 MK~vlITGa-ssGIG~a~A-----~~~a~~G~~V~~~~r 33 (258)
T PRK08267 1 MKSIFITGA-ASGIGRATA-----RLFAARGWRVGAYDI 33 (258)
T ss_pred CCEEEEECC-CCHHHHHHH-----HHHHHCCCEEEEEEC
T ss_conf 998999072-268999999-----999987999999988
No 422
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=43.48 E-value=13 Score=17.88 Aligned_cols=109 Identities=20% Similarity=0.394 Sum_probs=60.8
Q ss_pred EEEEEEE-EEEEECCCCCCH---HHHHHHHHHHHHHCCC------CCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEC
Q ss_conf 7999974-675422566200---3478999999997499------87689992387589999999986419886772403
Q gi|254780195|r 170 ALYIHLT-LMPYIRSSGELK---TKPTQHSVKELQALGV------HPDILLIRADRDIPEMERRKISLFCNVPMSAVIPA 239 (544)
Q Consensus 170 ~~fiHvt-lvP~l~~~gE~K---TKPTQhSVk~Lrs~GI------qPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~ 239 (544)
++-||.- .++-.+-.|-+- +=|||--++.|++.-+ .|++|||||+-.=-+- |+.-++-....-|..
T Consensus 181 aagiH~EDQ~a~~KkCGH~gGkVlVPt~e~i~rL~AaRla~Dvmgv~tvlvARTDa~aA~L----its~~D~~d~~fi~~ 256 (433)
T COG2224 181 AAGVHFEDQLASEKKCGHLGGKVLVPTQEAIRRLNAARLAADVMGVPTILVARTDAEAADL----ITSDVDPSDGEFITG 256 (433)
T ss_pred CCEEEHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCCCCCCCCCCCCCC
T ss_conf 7555204530244443567870870179999999999999987189846998305210154----046678766776577
Q ss_pred CC-CCCHHHHHHHHHHCCHHHHHHHHHCCC--------CCCCCCHHHHHHHHHHHCC
Q ss_conf 89-862026689887649488999983878--------8886204789999987418
Q gi|254780195|r 240 LD-VDDIYKVPLSYHREGIDSVVLNAFGIE--------NVSLPQIDNWQTFCDRTLS 287 (544)
Q Consensus 240 ~D-v~sIY~VPl~l~~q~l~~~I~~~L~l~--------~~~~~~l~~W~~~~~~~~~ 287 (544)
+- .+.-|.+ +-|+...|.+-|--- ..+.|||..=+.|++.++.
T Consensus 257 ~Rt~eG~y~~-----k~Gie~aI~r~lA~ApyaDl~W~ET~~Pdle~ak~Fae~Ih~ 308 (433)
T COG2224 257 ERTSEGFYRT-----KGGIEQAIARGLAYAPYADLLWCETSTPDLEEARQFAEAIHA 308 (433)
T ss_pred CCCCCCEEEE-----CCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7677752463-----587488999888518655357885599899999999999998
No 423
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=43.43 E-value=25 Score=15.81 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=6.7
Q ss_pred EEEECCEECCCCH
Q ss_conf 9993750144444
Q gi|254780195|r 5 IFITGGVVSSLGK 17 (544)
Q Consensus 5 I~VtGGV~SglGK 17 (544)
|+..||..+|+--
T Consensus 5 IltsGG~~pGmNa 17 (338)
T cd00363 5 VLTSGGDAPGMNA 17 (338)
T ss_pred EECCCCCCHHHHH
T ss_conf 9868888668889
No 424
>PRK09072 short chain dehydrogenase; Provisional
Probab=43.41 E-value=25 Score=15.81 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=20.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 3999937501444448999999999996898288985
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRK 39 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K 39 (544)
|.++|||+- ||+|+-+ ...|-.+|++|...-
T Consensus 6 K~vlITGas-sGIG~a~-----A~~la~~G~~vil~~ 36 (262)
T PRK09072 6 KRVLLTGAS-GGIGEAL-----AEALCAAGARLLLVG 36 (262)
T ss_pred CEEEEECCC-CHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf 889994862-3999999-----999998799899998
No 425
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405 A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=43.17 E-value=16 Score=17.12 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCCCCCC---CHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHH---HHHHHHHHHHHHHHCCCCC---E
Q ss_conf 48899998387888862---0478999998741843437999952001481346---8888888888787367241---6
Q gi|254780195|r 257 IDSVVLNAFGIENVSLP---QIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAY---RSLIEALRHSGVSNYTKVQ---L 327 (544)
Q Consensus 257 l~~~I~~~L~l~~~~~~---~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY---~Si~EAL~hA~~~~~~kv~---i 327 (544)
-.+.+|-+|+|.- .+| +++..+.+++.+ |++. +=|-|+| -|-+.+..-.+.+++.... =
T Consensus 216 WleqvCahlGlGv-qePhP~E~~AFrAYA~~Y--P~~~---------~lL~DTYDtL~SG~~nai~va~eLg~~~~~~~g 283 (523)
T TIGR01513 216 WLEQVCAHLGLGV-QEPHPSELEAFRAYAKLY--PKNT---------VLLVDTYDTLRSGLPNAIAVAKELGEQGKEVVG 283 (523)
T ss_pred HHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHC--CCCC---------EEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7988998735765-688966789999999975--8971---------675111667767899999999997520550588
Q ss_pred EEECCCCCCC
Q ss_conf 7722565672
Q gi|254780195|r 328 SWIDAETLEK 337 (544)
Q Consensus 328 ~wIdse~le~ 337 (544)
.-|||=||..
T Consensus 284 VRiDSGDL~~ 293 (523)
T TIGR01513 284 VRIDSGDLAY 293 (523)
T ss_pred EEECHHHHHH
T ss_conf 9961177999
No 426
>PRK09242 tropinone reductase; Provisional
Probab=42.84 E-value=25 Score=15.75 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=11.9
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- ||+|+.++ ..|-..|.+|..
T Consensus 11 K~alITGgs-~GIG~a~a-----~~la~~Ga~V~~ 39 (258)
T PRK09242 11 QTALITGAS-KGIGLAIA-----RELLGLGADVLI 39 (258)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 999994848-68999999-----999987998999
No 427
>PRK10936 periplasmic sensory protein associated with the TorRS two-component regulatory system; Provisional
Probab=42.80 E-value=25 Score=15.75 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=12.6
Q ss_pred CEEEEEEHHHCCCCHHH-HHHHHHHHHHHHHHC
Q ss_conf 37999952001481346-888888888878736
Q gi|254780195|r 291 EVKVAIVGKYIHLKDAY-RSLIEALRHSGVSNY 322 (544)
Q Consensus 291 ~V~IaiVGKY~~l~DaY-~Si~EAL~hA~~~~~ 322 (544)
+-||+.+ |-.|.|+| .|+...+.-++-+++
T Consensus 45 ~~ki~~~--~p~lkd~yW~~v~~G~~~~Ak~lG 75 (340)
T PRK10936 45 PWKLCAL--YPHLKDSYWLSVNYGLVQEAKRLG 75 (340)
T ss_pred CCEEEEE--ECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7179998--068888699999999999999809
No 428
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=42.68 E-value=25 Score=15.73 Aligned_cols=97 Identities=27% Similarity=0.318 Sum_probs=46.4
Q ss_pred CCCEEEECCCCCC--C-CC--------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC---CCCCCCCHH------
Q ss_conf 6983997377786--5-50--------16888998874047632235576999999998751---688999700------
Q gi|254780195|r 346 GVHGILVPGGFGK--R-GS--------EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNL---AGIPNACST------ 405 (544)
Q Consensus 346 ~~dGIlVPGGFG~--R-Gi--------eGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnv---lgl~dAnSt------ 405 (544)
++=|=+|-|||-. | |. -|-..|+ ||-.| ||.|.+ .||..= ||===+||-
T Consensus 125 DVLGDVVCGGFAmP~R~g~A~eiYiVtSge~MAl-YAANN------I~kGI~----kYa~~GGv~LGG~IcN~R~~~~e~ 193 (278)
T TIGR01287 125 DVLGDVVCGGFAMPLREGLAQEIYIVTSGEMMAL-YAANN------IAKGIL----KYAKSGGVRLGGIICNSRNVDDEK 193 (278)
T ss_pred EECCCEEECCCCCHHHCCCCCEEEEECCCHHHHH-HHHHH------HHHHHH----HHHHCCCCEECCEEECCCCCCCHH
T ss_conf 4236556566036100588654888603406789-99978------877789----997538822224787145762178
Q ss_pred H----CC-CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC--CCEEE
Q ss_conf 0----35-6666412115011234653001565546740231652578558706688637--98476
Q gi|254780195|r 406 E----FS-EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG--LDLIP 465 (544)
Q Consensus 406 E----f~-~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg--~~~I~ 465 (544)
| |. .....+|..+|-..-..+-|-+. -| -+...|+|.-++.|. +..|.
T Consensus 194 El~~~fA~~lgtq~i~~VPrs~~V~~AEl~~------~T------VIE~dP~s~qA~~YR~LA~~I~ 248 (278)
T TIGR01287 194 ELVDEFAKKLGTQLIHFVPRSNIVQKAELEK------KT------VIEYDPESEQANEYRELAKKIY 248 (278)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCCHHHHHCC------CC------EEEECCCCHHHHHHHHHHHHHH
T ss_conf 9999999873770675217885212787368------84------5633887157899999999998
No 429
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=42.60 E-value=12 Score=17.97 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHC
Q ss_conf 01688899887404763223557699999999875168899970003566664121150112
Q gi|254780195|r 361 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWM 422 (544)
Q Consensus 361 ieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~ 422 (544)
.+.--.+++|||+++|||=-|=.- ++.+...+.++..- |.+...|+|-..|-..
T Consensus 321 f~~l~~t~~yc~~~~ipFP~i~~~------~~~~d~~~pkecyv--f~~~~~P~VlhFpL~N 374 (430)
T cd07202 321 FETIKDTAEYCRKHNIPFPQVDEA------KLDQDAEAPKDFYV--FKGENGPVVMHFPLFN 374 (430)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCC------CCHHHCCCCCEEEE--ECCCCCCEEEEEEEEC
T ss_conf 526899999999749999989987------44012358860587--6599997899972042
No 430
>pfam10751 DUF2535 Protein of unknown function (DUF2535). This family of proteins with unknown function appears to be restricted to Bacillus spp.
Probab=42.60 E-value=20 Score=16.41 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=35.3
Q ss_pred ECCCCCEEEEEEEC----CCCEEEEEECCCC------CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86999868999838----9984999724877------3278769884158999999987
Q gi|254780195|r 492 FSVDHALPEVVEYI----NHPWFIGVQYHPE------LKSRPLDPHPLFVSFIQATVLY 540 (544)
Q Consensus 492 ~~~d~~lvEiiEl~----~HpffvgvQfHPE------f~Srp~~phPLF~~fi~Aal~~ 540 (544)
+..+|.-|.++|+| +||+|.-+|++=| |+|+--+..=-|...++-+++-
T Consensus 9 k~~~GqkVKi~eIPVL~~d~p~~Fmi~~RLq~fi~~v~~~~~~r~vYSFreYlKr~lKW 67 (83)
T pfam10751 9 KNADGQKVKVTEIPVLKEDNPHFFMIQLRLQLFIAKVYKSKSKRTVYSFREYLKRRLKW 67 (83)
T ss_pred ECCCCCEEEEEECCEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCC
T ss_conf 63788688899731454899604307999999999997078876347589999986281
No 431
>KOG0610 consensus
Probab=42.29 E-value=4.3 Score=21.24 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHCCCEEEEECCCCC---EEEEEEECCCCEEEEEECC
Q ss_conf 3278899899978959999869998---6899983899849997248
Q gi|254780195|r 473 EVNVRYREKLEGCGLKFSGFSVDHA---LPEVVEYINHPWFIGVQYH 516 (544)
Q Consensus 473 EvN~~y~~~le~~Gl~~sg~~~d~~---lvEiiEl~~HpffvgvQfH 516 (544)
+|-.+-++.+.+- . -++|... .--+.|++.||||=||||-
T Consensus 359 ~vs~~akDLIr~L--L--vKdP~kRlg~~rGA~eIK~HpFF~gVnWa 401 (459)
T KOG0610 359 EVSSAAKDLIRKL--L--VKDPSKRLGSKRGAAEIKRHPFFEGVNWA 401 (459)
T ss_pred CCHHHHHHHHHHH--H--CCCHHHHHCCCCCHHHHHCCCCCCCCCHH
T ss_conf 6226799999998--6--04805542541024776428422577710
No 432
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=42.22 E-value=26 Score=15.69 Aligned_cols=84 Identities=24% Similarity=0.240 Sum_probs=38.3
Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEECCCCCCCCCHHHHH--CCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf 79999520014813468888888888787367241-677225656723445662--169839973777865501688899
Q gi|254780195|r 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQ-LSWIDAETLEKEDPVKHF--YGVHGILVPGGFGKRGSEGKIAAI 368 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~-i~wIdse~le~~~~~~~L--~~~dGIlVPGGFG~RGieGkI~Ai 368 (544)
-+|+++.- + .+...++.++++.+...++..+. ..+++...-+-......+ .+.|.|++. +.+... ...+
T Consensus 137 ~~vaiv~~--~-~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~i~~i~~~~~d~v~~~-~~~~~~----~~~~ 208 (299)
T cd04509 137 KKVAILYD--D-DSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLC-GSGEDA----ATIL 208 (299)
T ss_pred CEEEEECC--C-CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC-CCCHHH----HHHH
T ss_conf 77999557--7-40679999999999998799799998469999899999999996699999990-771899----9999
Q ss_pred HHHHCC----CCCHHHHHH
Q ss_conf 887404----763223557
Q gi|254780195|r 369 KFAREN----KIPFLGICF 383 (544)
Q Consensus 369 ~yARen----~iP~LGICl 383 (544)
+-+|+. +.|++|.=.
T Consensus 209 ~~~~~~g~~~~~~~~~~~~ 227 (299)
T cd04509 209 KQAAEAGLTGGYPILGITL 227 (299)
T ss_pred HHHHHCCCCCCCEEEEECC
T ss_conf 9999759988973999567
No 433
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=42.14 E-value=26 Score=15.68 Aligned_cols=187 Identities=17% Similarity=0.222 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCC-HHHHHHH
Q ss_conf 999999999996898288985445533488888864435078727984002556411332287477546801-2589999
Q gi|254780195|r 19 VAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTAKADNIT-AGRIYKN 97 (544)
Q Consensus 19 i~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~~~~niT-~Gkiy~~ 97 (544)
+.-.||.+||+..|++|+- .=|+| |+| .-.++=+--|.+|.+....+...+. -+++|..
T Consensus 137 iiGdsLariL~~~G~~V~r---eyYin-D~G----------------~Qi~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~ 196 (562)
T PRK12451 137 MIGNSLKHIAEKCGYEVVG---INYIG-DWG----------------TQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQ 196 (562)
T ss_pred HHHHHHHHHHHHCCCEEEE---EEEEC-CCC----------------HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999986985999---99747-730----------------899999999998544011246757899999999
Q ss_pred HHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH-----HHHHCCCCCCCEEE
Q ss_conf 9988857775774025646024898999970788987899972431222123068999999-----99874977685799
Q gi|254780195|r 98 VIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQ-----FGNEFSHRGSKALY 172 (544)
Q Consensus 98 vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQ-----l~~e~g~~~~n~~f 172 (544)
.-+.- +--|.+.++++.+.+...+ ||-|...+.+-+|+ ++..+.. +-
T Consensus 197 ~~~~~----------~~~~~~~~~~~~~~~~le~-------------~d~~~~~~~~~~~~~~l~~~~~~l~~-----l~ 248 (562)
T PRK12451 197 FHEEV----------KDDEELEEEGRAWFKKLEE-------------GDEEAVELWNWFRHESLKEFSRIYEL-----LG 248 (562)
T ss_pred HHHHH----------CCCHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHHHHHHHH-----HC
T ss_conf 99865----------0480068999999998766-------------89999999999999999999999999-----29
Q ss_pred EEEEEEEEECCCCC-CHHHHHHHHHHHHHHCCC----------------CCCEEEEECCCCCC---HHH---HHHHHHHC
Q ss_conf 99746754225662-003478999999997499----------------87689992387589---999---99998641
Q gi|254780195|r 173 IHLTLMPYIRSSGE-LKTKPTQHSVKELQALGV----------------HPDILLIRADRDIP---EME---RRKISLFC 229 (544)
Q Consensus 173 iHvtlvP~l~~~gE-~KTKPTQhSVk~Lrs~GI----------------qPDiivcRse~~l~---~~~---k~KIalfc 229 (544)
|+-.. |. +| .-.......++.|..-|. .||.++-||+...+ .++ ..|...|
T Consensus 249 v~fD~--~~---~Es~~~~~~~~~i~~L~~~g~~~e~dGA~~~~~~~~g~~~~vl~ksDGt~tY~t~DiA~~~~k~~~~- 322 (562)
T PRK12451 249 VEFTN--FQ---GEAFYNNLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRDLTAALYRQNTF- 322 (562)
T ss_pred CEEEE--EE---CHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCHHCCCCEEEECCCCCCEEECCHHHHHHHHHHHC-
T ss_conf 72014--52---3244512478999999977978947997435871312786389918997213166478999998730-
Q ss_pred CCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 988677240389862026689887649488999983878
Q gi|254780195|r 230 NVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIE 268 (544)
Q Consensus 230 ~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~ 268 (544)
..+.+|...+.+.-+.++-++. +++.|+..
T Consensus 323 --~~d~~I~V~gadh~~~~~rv~a-------~l~~lg~~ 352 (562)
T PRK12451 323 --GFDKALYVVGPEQSLHFNQFFT-------VLKKLGYT 352 (562)
T ss_pred --CCCEEEEEECCCHHHHHHHHHH-------HHHHCCCC
T ss_conf --9975899956747679999999-------99974997
No 434
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=42.10 E-value=26 Score=15.67 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 14813468888888888787367241677225656723445662169839973777865501688899887404763223
Q gi|254780195|r 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLG 380 (544)
Q Consensus 301 ~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~iP~LG 380 (544)
+...-+|+. -|+|+.|+-..+..+.++-=.+...+..=..+.+...|+|++... ..+++ +|=.+.|.+-
T Consensus 9 tGiAHTymA-AeaL~~aA~~~G~~ikVEtqg~~g~~n~Lt~~~I~~Ad~VIiA~d---~~i~~-------~RF~gk~~~~ 77 (96)
T cd05569 9 TGIAHTYMA-AEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAAD---VPVDD-------ERFAGKRVYE 77 (96)
T ss_pred CHHHHHHHH-HHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEEEC---CCCCH-------HHCCCCEEEE
T ss_conf 609899999-999999999879959999479878778799999985999999936---76754-------3149976999
Q ss_pred HHH
Q ss_conf 557
Q gi|254780195|r 381 ICF 383 (544)
Q Consensus 381 ICl 383 (544)
...
T Consensus 78 ~~~ 80 (96)
T cd05569 78 VSV 80 (96)
T ss_pred ECH
T ss_conf 748
No 435
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.06 E-value=26 Score=15.67 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 92399993750144444899999999999689828898
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|-|-++|||| -||+|+.+ ...|-..|.+|...
T Consensus 4 ~gK~alVTGa-s~GIG~ai-----a~~~a~~Ga~V~~~ 35 (237)
T PRK06550 4 MTKTVLVTGA-ASGIGLAQ-----ARAFLEQGAHVYGV 35 (237)
T ss_pred CCCEEEEECC-CCHHHHHH-----HHHHHHCCCEEEEE
T ss_conf 9989999374-77999999-----99999879999997
No 436
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=41.98 E-value=26 Score=15.66 Aligned_cols=73 Identities=23% Similarity=0.125 Sum_probs=30.0
Q ss_pred EEEEEEHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHH---H--HCCCCEEEECCCCCCCCCHHHH
Q ss_conf 7999952001481346-88888888887873672416772256567234456---6--2169839973777865501688
Q gi|254780195|r 292 VKVAIVGKYIHLKDAY-RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVK---H--FYGVHGILVPGGFGKRGSEGKI 365 (544)
Q Consensus 292 V~IaiVGKY~~l~DaY-~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~---~--L~~~dGIlVPGGFG~RGieGkI 365 (544)
-+++++.- .++| .++.+++..+.-..+.++ ...+.-.....+... . -.+.|.|++. ++|.-+ .
T Consensus 136 kkva~i~~----d~~~G~~~~~~~~~~~~~~G~~v--v~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~-~~~~~~----~ 204 (334)
T cd06327 136 KKWFFLTA----DYAFGHSLERDARKVVKANGGKV--VGSVRHPLGTSDFSSYLLQAQASGADVLVLA-NAGADT----V 204 (334)
T ss_pred CEEEEEEC----CCHHHHHHHHHHHHHHHHCCCEE--EEEEECCCCCCCHHHHHHHHHHCCCCEEEEE-CCCHHH----H
T ss_conf 87999953----74566999999999999659879--9999628997556899988775599999991-665479----9
Q ss_pred HHHHHHHCCC
Q ss_conf 8998874047
Q gi|254780195|r 366 AAIKFARENK 375 (544)
Q Consensus 366 ~Ai~yARen~ 375 (544)
..++-+|+.+
T Consensus 205 ~~~~q~~~~G 214 (334)
T cd06327 205 NAIKQAAEFG 214 (334)
T ss_pred HHHHHHHHCC
T ss_conf 9999999749
No 437
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.96 E-value=26 Score=15.66 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCEEEECCCCCC-CCCHHHHHCCCCE---EEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 416772256567-2344566216983---99737778655016888998874047
Q gi|254780195|r 325 VQLSWIDAETLE-KEDPVKHFYGVHG---ILVPGGFGKRGSEGKIAAIKFARENK 375 (544)
Q Consensus 325 v~i~wIdse~le-~~~~~~~L~~~dG---IlVPGGFG~RGieGkI~Ai~yARen~ 375 (544)
=.+.|||-+.=+ .+.....|+.+++ +||-||-. +|.+=.-++-..++..+
T Consensus 321 ~gv~fiNDSKATN~~a~~~AL~~f~~~~iilI~GG~~-Kg~d~~~l~~~~~~~~~ 374 (468)
T PRK04690 321 DGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHD-RGLDWTDFAAHMAQQAP 374 (468)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHHHHCCC
T ss_conf 9999973787789899999997276685799973676-67787999999863376
No 438
>pfam00521 DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A.
Probab=41.86 E-value=26 Score=15.65 Aligned_cols=71 Identities=24% Similarity=0.216 Sum_probs=35.5
Q ss_pred HHHHHHHHCCCCCCEEEEEEHHHCCCCHHHH-----HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 9999987418434379999520014813468-----88888888878736724167722565672344566216983997
Q gi|254780195|r 278 WQTFCDRTLSLKNEVKVAIVGKYIHLKDAYR-----SLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILV 352 (544)
Q Consensus 278 W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~-----Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlV 352 (544)
|..+-.+..+-++.+++|=+.=|+ .-+|- |+.+|+.--|- +-.-++ -+|-
T Consensus 19 ~~~~~~~l~~~~~~~Kva~l~G~v--~~~YHpHGe~sl~~tiv~mAQ--~f~~n~---------------------~Ll~ 73 (428)
T pfam00521 19 YAMFELGLNLDKKYKKVARLVGDV--MGKYHPHGDASIYDALVRMAQ--DFVGNI---------------------PLLD 73 (428)
T ss_pred HHHHHHCCCCCCCCCEEEEEHHHH--HHCCCCCCHHHHHHHHHHHHH--HHHCCC---------------------CCCC
T ss_conf 999972788899860564333656--635688858999999999867--631565---------------------5321
Q ss_pred C-CCCCCCCCHHHHHHHHHHHC
Q ss_conf 3-77786550168889988740
Q gi|254780195|r 353 P-GGFGKRGSEGKIAAIKFARE 373 (544)
Q Consensus 353 P-GGFG~RGieGkI~Ai~yARe 373 (544)
| |-||+|-..|+=+|.||-=.
T Consensus 74 ~~GnFGsr~~g~~~AA~RYi~t 95 (428)
T pfam00521 74 GQGNFGSRLDGDKAAAMRYTEA 95 (428)
T ss_pred CCCCCCCCCCCCCHHHHHHHHH
T ss_conf 6888888888983277889997
No 439
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=41.75 E-value=26 Score=15.64 Aligned_cols=113 Identities=20% Similarity=0.139 Sum_probs=57.1
Q ss_pred CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECC-CCCCCCCCCCCHHHHC
Q ss_conf 923999937501444448999999999996898288985445533488888864435078727-9840025564113322
Q gi|254780195|r 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTD-DGGEADLDFGHYERFM 79 (544)
Q Consensus 1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~-DG~EtDlDlG~YERFl 79 (544)
|-|.+|++||. | |-=.-+-+++.-|+.+|+.|.. +++ .|-|.++---.--+|.
T Consensus 1 mkkI~i~~GGT--G-GHi~Palala~~L~~~g~ev~~-----------------------ig~~~g~E~~~v~~~~~~~~ 54 (359)
T PRK00726 1 MKKILLAGGGT--G-GHVFPALALAEELKKRGWEVLW-----------------------LGTKRGMEARLVPKAGIEFH 54 (359)
T ss_pred CCEEEEEECCC--H-HHHHHHHHHHHHHHHCCCEEEE-----------------------EECCCHHHHHHCCCCCCCEE
T ss_conf 98899995886--8-9999999999999838798999-----------------------97882686540441498389
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 87477546801258999999888577757740256460248989999707889878999724312221230689999999
Q gi|254780195|r 80 GISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQF 159 (544)
Q Consensus 80 ~~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl 159 (544)
-++...-.+--.-+....++.- +-.-++.+..-...+||++| ..|-+-|.|-+=|.+.+
T Consensus 55 ~i~~~~~~~~~~~~~~~~~~~l----------------~~~~~~~~~il~~~kPd~Vi-----g~GGY~s~P~~laA~l~ 113 (359)
T PRK00726 55 FIPIGGLRRKGSLANLKAPFKL----------------LKGVLQARKILKRFKPDVVV-----GFGGYVSGPAGLAARLL 113 (359)
T ss_pred EEECCCCCCCCHHHHHHHHHHH----------------HHHHHHHHHHHHHCCCCEEE-----ECCCHHHHHHHHHHHHC
T ss_conf 9777888987879999999999----------------99999999999974999999-----78974128999999982
Q ss_pred H
Q ss_conf 9
Q gi|254780195|r 160 G 160 (544)
Q Consensus 160 ~ 160 (544)
+
T Consensus 114 ~ 114 (359)
T PRK00726 114 G 114 (359)
T ss_pred C
T ss_conf 9
No 440
>PRK08264 short chain dehydrogenase; Validated
Probab=41.69 E-value=26 Score=15.63 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=20.4
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCE-EE
Q ss_conf 39999375014444489999999999968982-88
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYK-VR 36 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~-v~ 36 (544)
|-++|||| -||+|+.++- .|-++|.+ |.
T Consensus 6 K~alITGa-ssGIG~aiA~-----~la~~Ga~~V~ 34 (235)
T PRK08264 6 KVVLVTGA-NRGIGRAFVE-----ELLARGAAKVY 34 (235)
T ss_pred CEEEEECC-CCHHHHHHHH-----HHHHCCCCEEE
T ss_conf 88999267-5499999999-----99986997799
No 441
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=41.55 E-value=26 Score=15.62 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=16.3
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- ||+|+.++ .-|-..|.+|..
T Consensus 11 K~alITGas-~GIG~aia-----~~la~~Ga~Vv~ 39 (253)
T PRK08993 11 KVAVVTGCD-TGLGQGMA-----LGLAEAGCDIVG 39 (253)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 989993887-68999999-----999987999999
No 442
>KOG1154 consensus
Probab=41.54 E-value=12 Score=18.17 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=34.0
Q ss_pred CEEEECCC----CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 83997377----78655016888998874047632235576999999
Q gi|254780195|r 348 HGILVPGG----FGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVI 390 (544)
Q Consensus 348 dGIlVPGG----FG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avI 390 (544)
.++=++.| +|.-|.|-|..|+-+|-.++++.. ||-|++-..|
T Consensus 215 ~~v~~tfG~~S~vGtGGM~tKv~AA~~A~~~Gv~vi-I~~g~~p~~I 260 (285)
T KOG1154 215 PQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVI-ITNGDAPENI 260 (285)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE-EECCCCHHHH
T ss_conf 887644666676576761155888877760791499-9479866778
No 443
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=41.43 E-value=26 Score=15.60 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=9.3
Q ss_pred CEEEEE-EHHHCCC--CHHHHHHHHH
Q ss_conf 379999-5200148--1346888888
Q gi|254780195|r 291 EVKVAI-VGKYIHL--KDAYRSLIEA 313 (544)
Q Consensus 291 ~V~Iai-VGKY~~l--~DaY~Si~EA 313 (544)
-|.|+= .|..... .-+|-+-.-|
T Consensus 137 II~isS~~g~~~~~~~~~~Y~asKaa 162 (253)
T PRK12826 137 IVLTSSVAGPRVGYPGLAHYAASKAG 162 (253)
T ss_pred EEEEECHHHHCCCCCCCHHHHHHHHH
T ss_conf 99995256415689973889999999
No 444
>PRK06125 short chain dehydrogenase; Provisional
Probab=41.34 E-value=26 Score=15.59 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=17.2
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 399993750144444899999999999689828898
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|-++||||- ||+|++|+ ..|-..|.+|...
T Consensus 8 K~alITG~s-~GIG~aiA-----~~la~~Ga~V~i~ 37 (259)
T PRK06125 8 KRVLITGAS-KGIGAAAA-----EAFAAEGCHLVLA 37 (259)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEEE
T ss_conf 989996877-68999999-----9999879989999
No 445
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=41.17 E-value=27 Score=15.58 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.1
Q ss_pred CEEEEEEHHHCCC
Q ss_conf 3799995200148
Q gi|254780195|r 291 EVKVAIVGKYIHL 303 (544)
Q Consensus 291 ~V~IaiVGKY~~l 303 (544)
-|+|+-+......
T Consensus 140 IInisS~~~~~~~ 152 (261)
T PRK08936 140 IINMSSVHEQIPW 152 (261)
T ss_pred EEEEEEHHCCCCC
T ss_conf 7887331005789
No 446
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=41.12 E-value=19 Score=16.62 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=40.7
Q ss_pred CEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-----CCCHHHHHCC-CCEEEECCCC
Q ss_conf 3799995200148134688888888887873672416772256567-----2344566216-9839973777
Q gi|254780195|r 291 EVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLE-----KEDPVKHFYG-VHGILVPGGF 356 (544)
Q Consensus 291 ~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le-----~~~~~~~L~~-~dGIlVPGGF 356 (544)
.=++-+|=.|--.|.-=++.++|++-..-..+.++-+.+-. -.+. -++-.+.|+. +|-++|--=+
T Consensus 354 ~g~~~~~DDYAHHPtEi~aTl~aAr~~~~~k~~r~v~~FQP-HrYsRT~~~~~~F~~~L~~haD~l~~~diY 424 (491)
T TIGR01082 354 NGTVLLIDDYAHHPTEIKATLAAARQVYPDKNRRIVVVFQP-HRYSRTKDLFDDFAKVLSDHADELILLDIY 424 (491)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 52799996589997899999999987521179579999749-856789988999999997308999981532
No 447
>pfam06317 Arena_RNA_pol Arenavirus RNA polymerase. This family consists of several Arenavirus RNA polymerase proteins (EC:2.7.7.48).
Probab=41.10 E-value=13 Score=17.88 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=27.4
Q ss_pred CEEEEEECCCCCCCCCC---CCCHHHHHHHHHHHHHHH
Q ss_conf 84999724877327876---988415899999998764
Q gi|254780195|r 508 PWFIGVQYHPELKSRPL---DPHPLFVSFIQATVLYSQ 542 (544)
Q Consensus 508 pffvgvQfHPEf~Srp~---~phPLF~~fi~Aal~~~~ 542 (544)
|==|+--|--|||||-+ .--||..-||.|||.+-|
T Consensus 1365 PKsV~GtFaaEFKSRFfVwgeEvPLLTKFVaAALHNVK 1402 (2206)
T pfam06317 1365 PKSVIGTFVAEFKSRFFVWGEEVPLLTKFVAAALHNVK 1402 (2206)
T ss_pred CCHHCEEEHHHHHCCCEEECCCCHHHHHHHHHHHHCCC
T ss_conf 74000422666403004643643589999999861455
No 448
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=41.06 E-value=27 Score=15.56 Aligned_cols=73 Identities=27% Similarity=0.351 Sum_probs=49.3
Q ss_pred EHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 520014813468888888888787367241677225656723445662169839973777865501688899887404
Q gi|254780195|r 297 VGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAREN 374 (544)
Q Consensus 297 VGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yARen 374 (544)
-|||.+ ...+.||+.-++.. =+-|.+..++...-..++.++.|...+=-+.|.--|-|-.|-.+..++.|||-
T Consensus 23 Tgky~s----~~~~~~av~asg~~-ivTvAlRR~~~~~~~~~~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~ 95 (262)
T COG2022 23 TGKYPS----PAVLAEAVRASGSE-IVTVALRRVNATRPGGDGILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREA 95 (262)
T ss_pred CCCCCC----HHHHHHHHHHCCCC-EEEEEEEEECCCCCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 478999----89999999972786-69999886215788853088774113867678764558899999999999997
No 449
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=41.01 E-value=27 Score=15.56 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=26.5
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999375014444489999999999968982889
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|..|| +||-||-..|..+-.-|+..|.++..
T Consensus 2 iW~tG--LsgsGKTTlA~~l~~~L~~~~~~~~~ 32 (149)
T cd02027 2 IWLTG--LSGSGKSTIARALEEKLFQRGRPVYV 32 (149)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89879--99999999999999999986997599
No 450
>PRK06172 short chain dehydrogenase; Provisional
Probab=40.30 E-value=27 Score=15.48 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 78999999997499876899923875
Q gi|254780195|r 191 PTQHSVKELQALGVHPDILLIRADRD 216 (544)
Q Consensus 191 PTQhSVk~Lrs~GIqPDiivcRse~~ 216 (544)
..+..++++++.|-+ .+.+.++-.
T Consensus 43 ~~~~~~~~~~~~g~~--~~~~~~Dvs 66 (253)
T PRK06172 43 GGEETVALIREAGGE--ALFIACDVT 66 (253)
T ss_pred HHHHHHHHHHHCCCC--EEEEECCCC
T ss_conf 999999999964993--799981899
No 451
>PRK06841 short chain dehydrogenase; Provisional
Probab=40.27 E-value=27 Score=15.48 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=18.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 399993750144444899999999999689828898
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVR 38 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~ 38 (544)
|-++||||- ||+|+.+ ...|-..|.+|...
T Consensus 16 KvalVTGas-~GIG~ai-----A~~la~~Ga~V~i~ 45 (255)
T PRK06841 16 KVAVVTGGA-SGIGHAI-----AELFAAKGARVALL 45 (255)
T ss_pred CEEEEECCC-CHHHHHH-----HHHHHHCCCEEEEE
T ss_conf 999997967-7899999-----99999879999999
No 452
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.21 E-value=27 Score=15.47 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCC
Q ss_conf 24312221230689999999987497768579999746754225662003478999999997499876-89992387589
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPD-ILLIRADRDIP 218 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPD-iivcRse~~l~ 218 (544)
||=.|-|+.+-.|.+-++-+..+..+..-+ +.++. .....+--+..+..|++.+ +| +|++=+. ..+
T Consensus 2 Igvivp~~~n~f~~~~~~gi~~~a~~~gy~-lll~~---------t~~~~~~e~~~i~~l~~~~--vDGiIi~~~~-~~~ 68 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGYT-VFLAN---------SGEDVERQEQLLSTMLEHG--VAGIILCPAA-GTS 68 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCE-EEEEE---------CCCCHHHHHHHHHHHHHCC--CCEEEEECCC-CCC
T ss_conf 899978997599999999999999986998-99995---------8999899999999999659--9989994688-899
Q ss_pred HHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEH
Q ss_conf 99999998641988677240389862026689887649488999983878888620478999998741843437999952
Q gi|254780195|r 219 EMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVG 298 (544)
Q Consensus 219 ~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVG 298 (544)
.+..+++... ++|. |+-..++++ .+.......+.+.=...++.+.+ +..-+|+++|
T Consensus 69 ~~~~~~l~~~-~iPv--V~i~~~~~~--------------------~~~~~V~~d~~~~~~~a~~~L~~-~G~~~i~~i~ 124 (268)
T cd06289 69 PDLLKRLAES-GIPV--VLVAREVAG--------------------APFDYVGPDNAAGARLATEHLIS-LGHRRIAFIG 124 (268)
T ss_pred HHHHHHHHHC-CCCE--EEECCCCCC--------------------CCCCEEEECHHHHHHHHHHHHHH-HCCCEEEEEC
T ss_conf 9999999975-9989--983676799--------------------99878997779999999999997-3987099952
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC----HHHHH---CCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 00148134688888888887873672416772256567234----45662---169839973777865501688899887
Q gi|254780195|r 299 KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKED----PVKHF---YGVHGILVPGGFGKRGSEGKIAAIKFA 371 (544)
Q Consensus 299 KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~----~~~~L---~~~dGIlVPGGFG~RGieGkI~Ai~yA 371 (544)
.-.+...+. .=.+++.-|-...+.++.-.|+-......+. ..+.| ...++|+... -.-.+.+++++
T Consensus 125 ~~~~~~~~~-~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~------D~~A~g~l~~l 197 (268)
T cd06289 125 GLEDSSTRR-ERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCFN------DLVAFGAMSGL 197 (268)
T ss_pred CCCCCCHHH-HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEECCCC------HHHHHHHHHHH
T ss_conf 898870699-99999999999769986643453168865569999999984699986203576------89999999999
Q ss_pred HCCCC
Q ss_conf 40476
Q gi|254780195|r 372 RENKI 376 (544)
Q Consensus 372 Ren~i 376 (544)
+++++
T Consensus 198 ~~~gi 202 (268)
T cd06289 198 RRAGL 202 (268)
T ss_pred HHCCC
T ss_conf 98499
No 453
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=40.05 E-value=28 Score=15.46 Aligned_cols=61 Identities=11% Similarity=0.234 Sum_probs=35.0
Q ss_pred EECCCHHHHHHHHHHCC-CCCCCEEEEECCCC--CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 56460248989999707-88987899972431--22212306899999999874977685799997467
Q gi|254780195|r 113 QVIPHVTNEIKEFITQG-NEDADFVICEIGGT--IGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLM 178 (544)
Q Consensus 113 QvIPHvTdeIk~~I~~~-~~~~Dv~ivEiGGT--VGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlv 178 (544)
.|||--|.++-.++... .++..=|++- ||. -|++-=--|.+++..++-+.|- ....||.+|
T Consensus 35 ~Mi~vt~~~l~k~~~el~kkGy~g~llS-GGm~srg~VPl~kf~d~lK~lke~~~l----~inaHvGfv 98 (275)
T COG1856 35 HMIKVTTKSLLKRCMELEKKGYEGCLLS-GGMDSRGKVPLWKFKDELKALKERTGL----LINAHVGFV 98 (275)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCCCCHHHHHHHHHHHHHHHCE----EEEEEEEEC
T ss_conf 7525325778889999984576058975-786879974289999999998775374----899985100
No 454
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=40.01 E-value=28 Score=15.45 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=7.9
Q ss_pred HHCCCCCCCCEEECC
Q ss_conf 857775774025646
Q gi|254780195|r 102 ERRGDYLGTTVQVIP 116 (544)
Q Consensus 102 ER~G~ylG~TVQvIP 116 (544)
|..|.-.|+.|++|-
T Consensus 29 e~ng~~~G~~ielv~ 43 (336)
T cd06360 29 EAGGKLGGREVEFVV 43 (336)
T ss_pred HHCCCCCCEEEEEEE
T ss_conf 858888985889998
No 455
>TIGR01964 chpXY CO2 hydration protein; InterPro: IPR010220 This small family of proteins includes paralogs ChpX and ChpY in Synechococcus sp. PCC7942 and other cyanobacteria, associated with distinct NAD(P)H dehydrogenase complexes. These proteins collectively enable light-dependent CO2 hydration and CO2 uptake; loss of both blocks growth at low CO2 concentrations..
Probab=39.82 E-value=20 Score=16.44 Aligned_cols=96 Identities=9% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHH
Q ss_conf 772403898620266898876494889999838788886---20478999998741843437999952001481346888
Q gi|254780195|r 234 SAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSL---PQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSL 310 (544)
Q Consensus 234 ~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~---~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si 310 (544)
.++....-+=--|-||+-++..+|..+--+. =|..-+= -+-+++-++.+....-...++| .-.-..|.-.+
T Consensus 24 ~~~~~vvGi~K~Y~v~ld~Y~~~L~~i~~~~-fl~~fpFFKYF~~~ey~~l~nhyaG~tadlri-----WrG~a~ahPel 97 (421)
T TIGR01964 24 ANLMEVVGILKSYGVVLDAYWRDLLYIAERV-FLNLFPFFKYFNTKEYLELANHYAGETADLRI-----WRGEASAHPEL 97 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHCCCCHHHHHHHHHCCCCCCCEEE-----ECCCCCCCHHH
T ss_conf 6688887678778888999999998753222-22004300035740233100101576321146-----51764245589
Q ss_pred HHHHHHHHHH-HCCCCCEEEECCCCC
Q ss_conf 8888888787-367241677225656
Q gi|254780195|r 311 IEALRHSGVS-NYTKVQLSWIDAETL 335 (544)
Q Consensus 311 ~EAL~hA~~~-~~~kv~i~wIdse~l 335 (544)
.|-++-+-+. ...-++--|=|--+.
T Consensus 98 ~ef~ekG~~~k~p~Ll~H~WHdRiN~ 123 (421)
T TIGR01964 98 LEFIEKGEVTKMPKLLKHLWHDRINY 123 (421)
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCH
T ss_conf 99873378753247887641212455
No 456
>KOG1370 consensus
Probab=39.49 E-value=28 Score=15.40 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=38.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE-----------EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 431222123068999999998749776857999974-----------675422566200347899999999749987689
Q gi|254780195|r 141 GGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLT-----------LMPYIRSSGELKTKPTQHSVKELQALGVHPDIL 209 (544)
Q Consensus 141 GGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvt-----------lvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDii 209 (544)
|-|-=-+|....+|.+-++..++.- ..|.|.-| =+|...-.||--.------.+.|..-|-+|++|
T Consensus 53 GClH~tvqTAVLIETLv~LGAev~W---ssCNIfSTQdhaAAAiA~~gvpvfawkget~ee~~wcie~~~~~~g~~~nmI 129 (434)
T KOG1370 53 GCLHMTVQTAVLIETLVALGAEVRW---SSCNIFSTQDHAAAAIAEAGVPVFAWKGETEEEYWWCIERCLNKDGWQPNMI 129 (434)
T ss_pred EEEEEEHHHHHHHHHHHHHCCEEEE---EECCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 1254312378999999974761577---6401002405889988753886122136650655644443214678987466
Q ss_pred EEE
Q ss_conf 992
Q gi|254780195|r 210 LIR 212 (544)
Q Consensus 210 vcR 212 (544)
+=-
T Consensus 130 lDd 132 (434)
T KOG1370 130 LDD 132 (434)
T ss_pred ECC
T ss_conf 558
No 457
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=39.49 E-value=28 Score=15.40 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=26.0
Q ss_pred CCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 343799995200148134688888888887873672416772256567
Q gi|254780195|r 289 KNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLE 336 (544)
Q Consensus 289 ~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le 336 (544)
+..=+||++|-..+.. +...=.+++..|-...+..++-.|+-..+.+
T Consensus 180 ~Ghr~Ia~i~~~~~~~-~~~~R~~gf~~al~~~~l~~~~~~i~~~~~~ 226 (342)
T PRK10014 180 NGHQRIAWLGGQSSSL-TRAERVGGYCATLLKFGLPFHSEWVLECTSS 226 (342)
T ss_pred CCCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 5998699995788863-3999999999999976999883348966897
No 458
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=39.35 E-value=28 Score=15.38 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCCCCCCCCCE-EEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf 88888644350-78727984002556411332287477546801258999999888577757740256460248989999
Q gi|254780195|r 48 PGTMSPVQHGE-VFVTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFI 126 (544)
Q Consensus 48 ~GtmsP~eHGE-VfVt~DG~EtDlDlG~YERFl~~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I 126 (544)
+-..-|.++|| +||+|.-|..=||+- .. ..+. -||- =-|.|+++|++.+
T Consensus 24 ~~p~~~i~ra~G~~l~D~dG~~ylD~~---------~g-~~~~-----------------~lGh---~~p~i~~Ai~~ql 73 (429)
T PRK06173 24 PIPLYPVERADGVMITLKDGRRLIDGM---------SS-WWAA-----------------LHGY---NHPRLNAAATNQL 73 (429)
T ss_pred CCCCCCEEECCCCEEEECCCCEEEECC---------CC-HHHH-----------------HCCC---CCHHHHHHHHHHH
T ss_conf 899701684621789979999999856---------32-8853-----------------2379---9899999999999
Q ss_pred HCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 707889878999724312221230689999999987497768579999746754225662003478999999997
Q gi|254780195|r 127 TQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQA 201 (544)
Q Consensus 127 ~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs 201 (544)
.+...- +.+..-+.|.+|....+....+.+-+.+. +..+..| -+..++|--|.
T Consensus 74 ~~l~~~----------~~~~~~~~~~~~lae~L~~~~p~~l~~v~--------f~~SGsE----AvE~AiKlA~~ 126 (429)
T PRK06173 74 SKMSHI----------MFGGFTHEPAVELAQLLLEILPPELNKIF--------FADSGSV----AVEVAMKMALQ 126 (429)
T ss_pred HHCCCC----------CCCCCCCHHHHHHHHHHHHHCCCCCCEEE--------ECCCHHH----HHHHHHHHHHH
T ss_conf 757785----------56775777999999999984797758799--------7186599----99999999999
No 459
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.34 E-value=28 Score=15.38 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEECC-----CHHHHHHHHHHC--CCCCCCEEEEECCCCC----CCCC-C-CHHH
Q ss_conf 680125899999988857775774025646-----024898999970--7889878999724312----2212-3-0689
Q gi|254780195|r 87 DNITAGRIYKNVIDRERRGDYLGTTVQVIP-----HVTNEIKEFITQ--GNEDADFVICEIGGTI----GDIE-V-MPFV 153 (544)
Q Consensus 87 ~niT~Gkiy~~vi~kER~G~ylG~TVQvIP-----HvTdeIk~~I~~--~~~~~Dv~ivEiGGTV----GDIE-s-~pFl 153 (544)
+|||-|.-|...++..=.-.|-++.+.||= --|....+|+.. ...+||++++.+|+-= ...+ + .-|.
T Consensus 9 DSiT~g~g~~~~~~~~l~~~~~~~~~~viN~Gi~G~t~~~~~~r~~~~v~~~~Pd~Vii~~G~ND~~~~~~~~~~~~~~~ 88 (191)
T cd01834 9 NSITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGINDSFRGFDDPVGLEKFK 88 (191)
T ss_pred CCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCHHHHH
T ss_conf 87430996646899999986799986599843668877779999898873279999999846614412777656799999
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEEE
Q ss_conf 999999987497768579999746754
Q gi|254780195|r 154 EAIRQFGNEFSHRGSKALYIHLTLMPY 180 (544)
Q Consensus 154 EAiRQl~~e~g~~~~n~~fiHvtlvP~ 180 (544)
+.++++-.++.....+...+.+|..|+
T Consensus 89 ~~l~~ii~~~~~~~~~~~iil~~p~~~ 115 (191)
T cd01834 89 TNLRRLIDRLKNKESAPRIVLVSPIAY 115 (191)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 999999999997689988999827766
No 460
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family; InterPro: IPR014047 Members of this family probably act as chromate transporters , , and are found in both bacteria and archaebacteria. The protein reduces chromate accumulation and is essential for chromate resistance. They are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP..
Probab=39.27 E-value=18 Score=16.86 Aligned_cols=62 Identities=24% Similarity=0.514 Sum_probs=47.4
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCEEEECC----------CCCCCCCHHHHHH----------------HHHHHCCCCC-
Q ss_conf 416772256567234456621698399737----------7786550168889----------------9887404763-
Q gi|254780195|r 325 VQLSWIDAETLEKEDPVKHFYGVHGILVPG----------GFGKRGSEGKIAA----------------IKFARENKIP- 377 (544)
Q Consensus 325 v~i~wIdse~le~~~~~~~L~~~dGIlVPG----------GFG~RGieGkI~A----------------i~yARen~iP- 377 (544)
=+=+|+|.+++++-=+ |.+ ++|| ||=.+|+-|-+.| +-|.|-.++|
T Consensus 25 ~~~~W~s~~~y~~~~A---laQ----~~PGP~~~q~~~~lG~~~~g~~Ga~~ag~AF~LPs~l~~~~L~~~y~~~~~l~~ 97 (390)
T TIGR00937 25 DERQWLSEASYNDLVA---LAQ----LLPGPASSQVAIYLGYLRGGILGAILAGVAFVLPSFLLVVALAWLYVQYGSLPK 97 (390)
T ss_pred HHHHCCCHHHHHHHHH---HHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 8850678567612542---421----057825899999999998779999999999986999999999999997436436
Q ss_pred HHH-HHHHHHHHHHHHH
Q ss_conf 223-5576999999998
Q gi|254780195|r 378 FLG-ICFGMQMAVIEAA 393 (544)
Q Consensus 378 ~LG-IClGmQ~avIEfA 393 (544)
-.| +-.|.|.|||--.
T Consensus 98 ~~g~~f~G~~~~vi~li 114 (390)
T TIGR00937 98 AVGAVFYGLKAAVIALI 114 (390)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999988999999999
No 461
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=39.13 E-value=15 Score=17.43 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=7.8
Q ss_pred EEEEEECCEECC
Q ss_conf 399993750144
Q gi|254780195|r 3 KYIFITGGVVSS 14 (544)
Q Consensus 3 KyI~VtGGV~Sg 14 (544)
+.||||||.=||
T Consensus 1 ~~ilvtGgaRSG 12 (175)
T COG2087 1 MMILVTGGARSG 12 (175)
T ss_pred CEEEEECCCCCC
T ss_conf 908985686677
No 462
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=38.90 E-value=29 Score=15.34 Aligned_cols=111 Identities=26% Similarity=0.360 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 00347899999999749987689992387589999999986419886772403898620266898876494889999838
Q gi|254780195|r 187 LKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFG 266 (544)
Q Consensus 187 ~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~ 266 (544)
.|---..-.++.|.++| +|++|.|-... ..-+.+|.|.+++ .||++-|-.+ |.=-+.+++.+
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~e---gaa~~~a~~~~~~--pvINaGDG~~----------qHPTQ~LLDl~- 147 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEE---GAARLLAEFSGVN--PVINAGDGSH----------QHPTQALLDLY- 147 (316)
T ss_pred CCCCCHHHHHHHHHHHC--CCEEEEECCCC---CHHHHHHHHCCCC--CEEECCCCCC----------CCCCHHHHHHH-
T ss_conf 46610999999998607--99899947641---4899998735888--5478888999----------89528999999-
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 7888862047899999874184343799995200148134688888888887873672416772256567
Q gi|254780195|r 267 IENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLE 336 (544)
Q Consensus 267 l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le 336 (544)
.+.+.. ..-+-.+|||||. ....-.--|..+||..-+ .++..+..+.+-
T Consensus 148 -------------TI~~~~-G~~~gl~iaivGD-lkhsRva~S~~~~L~~~g------a~v~lvsP~~L~ 196 (316)
T COG0540 148 -------------TIREEF-GRLDGLKIAIVGD-LKHSRVAHSNIQALKRFG------AEVYLVSPETLL 196 (316)
T ss_pred -------------HHHHHH-CCCCCCEEEEECC-CCCHHHHHHHHHHHHHCC------CEEEEECCHHHC
T ss_conf -------------999984-8767947999825-441188887799999819------879998865867
No 463
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=38.86 E-value=29 Score=15.33 Aligned_cols=69 Identities=26% Similarity=0.368 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEE---ECCCHHHHHHHHHHCCCCCCCEEEEECCCC-C-------------CCCCCCHH
Q ss_conf 125899999988857775774025---646024898999970788987899972431-2-------------22123068
Q gi|254780195|r 90 TAGRIYKNVIDRERRGDYLGTTVQ---VIPHVTNEIKEFITQGNEDADFVICEIGGT-I-------------GDIEVMPF 152 (544)
Q Consensus 90 T~Gkiy~~vi~kER~G~ylG~TVQ---vIPHvTdeIk~~I~~~~~~~Dv~ivEiGGT-V-------------GDIEs~pF 152 (544)
|.+....+.+++ .|-.|. +||.=-++|++.+....+++|++|+ .||| + ++.+-..|
T Consensus 17 sn~~~l~~~l~~------~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~Dliit-tGG~g~g~~D~t~~al~~~~~~~l~~~ 89 (140)
T pfam00994 17 TNGPLLAALLRE------AGAEVIRYGIVPDDPEAIKEALAAAADEADVVIT-TGGTGPGPDDVTPEALAELGGRELPGG 89 (140)
T ss_pred HHHHHHHHHHHH------CCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCHHHHHHHHHCCCCCCH
T ss_conf 699999999998------7993779989788999999999997326999998-788778989855999999856667766
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999987497
Q gi|254780195|r 153 VEAIRQFGNEFSH 165 (544)
Q Consensus 153 lEAiRQl~~e~g~ 165 (544)
-+++|+++.+.|+
T Consensus 90 ~~~~~~v~~~pg~ 102 (140)
T pfam00994 90 EELFHGVALKPGK 102 (140)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999997166689
No 464
>KOG0258 consensus
Probab=38.86 E-value=15 Score=17.27 Aligned_cols=144 Identities=24% Similarity=0.380 Sum_probs=79.9
Q ss_pred CCCC--CEEECCCHHHHHHHHHHCC----CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE-----
Q ss_conf 5774--0256460248989999707----8898789997243122212306899999999874977685799997-----
Q gi|254780195|r 107 YLGT--TVQVIPHVTNEIKEFITQG----NEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHL----- 175 (544)
Q Consensus 107 ylG~--TVQvIPHvTdeIk~~I~~~----~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHv----- 175 (544)
=+|+ .-|=||-|...+-+.|.+- ++.-||.++- |. =.|+|++-.-+=.++.+-..|-.
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~-----GA------S~ai~~il~l~~~~~~~GvliPiPQYPL 173 (475)
T KOG0258 105 SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTT-----GA------SPAIRSILSLLIAGKKTGVLIPIPQYPL 173 (475)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEECC-----CC------CHHHHHHHHHHHCCCCCCEEEECCCCCH
T ss_conf 645530245773689999999885268989877755327-----88------5899999999965898703752687740
Q ss_pred ----------EEEEEE-CCCC--CCHHHHHHHHHHHHHHCCCCCCEEEEEC-----CCCCCHHHHHHHHHHCCCCHHHEE
Q ss_conf ----------467542-2566--2003478999999997499876899923-----875899999999864198867724
Q gi|254780195|r 176 ----------TLMPYI-RSSG--ELKTKPTQHSVKELQALGVHPDILLIRA-----DRDIPEMERRKISLFCNVPMSAVI 237 (544)
Q Consensus 176 ----------tlvP~l-~~~g--E~KTKPTQhSVk~Lrs~GIqPDiivcRs-----e~~l~~~~k~KIalfc~V~~~~Vi 237 (544)
+.|||- .-.. -+--.-.+.||.+-| -||.|-.++.=- -.-++++..++|-.||.- +.++
T Consensus 174 YsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~--~~l~ 250 (475)
T KOG0258 174 YSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAE--EGLV 250 (475)
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCHHHCHHHHHHHHHHHHH--CCCE
T ss_conf 48889972883354354334477788999999999986-16884189997799961145068779999999987--3707
Q ss_pred ECCC---CCCHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 0389---86202668988764948899998387
Q gi|254780195|r 238 PALD---VDDIYKVPLSYHREGIDSVVLNAFGI 267 (544)
Q Consensus 238 ~~~D---v~sIY~VPl~l~~q~l~~~I~~~L~l 267 (544)
-..| -+|||.----|+. -+.++..++-
T Consensus 251 llaDEVYQ~Nvy~~~skFhS---fKKvl~emg~ 280 (475)
T KOG0258 251 LLADEVYQDNVYTTGSKFHS---FKKVLHEMGN 280 (475)
T ss_pred EECHHHHHHHCCCCCCHHHH---HHHHHHHHCC
T ss_conf 73268887632578760274---9999998468
No 465
>PRK12939 short chain dehydrogenase; Provisional
Probab=38.80 E-value=29 Score=15.32 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 89999999974998768999238
Q gi|254780195|r 192 TQHSVKELQALGVHPDILLIRAD 214 (544)
Q Consensus 192 TQhSVk~Lrs~GIqPDiivcRse 214 (544)
.+...++|++.|- ++..+.++
T Consensus 44 ~~~~~~~l~~~g~--~~~~~~~D 64 (250)
T PRK12939 44 ARELAAALEAAGG--RAHAIAAD 64 (250)
T ss_pred HHHHHHHHHHCCC--EEEEEEEC
T ss_conf 9999999995599--09999924
No 466
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.77 E-value=29 Score=15.32 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 2431222123068999999998749776857999974675422566200347899999999749987689992
Q gi|254780195|r 140 IGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIR 212 (544)
Q Consensus 140 iGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcR 212 (544)
||=-|-|+.+-.|-+-++-+..+.... ..- ++ +..+++-..| -...+..|.+-+ +|-|+.-
T Consensus 2 IGvvv~~~~npff~~v~~gie~~a~~~--G~~-----~~--i~~s~~d~~~-q~~~i~~li~~~--vDgiIi~ 62 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQ--KVN-----LI--VSIANQDLNK-QLSDVEDFITKK--VDAIVLS 62 (267)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC--CCE-----EE--EECCCCCHHH-HHHHHHHHHHCC--CCEEEEE
T ss_conf 899968998979999999999999974--999-----99--9839999999-999999999749--9999990
No 467
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=38.75 E-value=29 Score=15.32 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=28.8
Q ss_pred CCCEEEECCCCCC----CCCHHHHHHHHHHH---CCCCCHHHHHHHHHHH
Q ss_conf 6983997377786----55016888998874---0476322355769999
Q gi|254780195|r 346 GVHGILVPGGFGK----RGSEGKIAAIKFAR---ENKIPFLGICFGMQMA 388 (544)
Q Consensus 346 ~~dGIlVPGGFG~----RGieGkI~Ai~yAR---en~iP~LGIClGmQ~a 388 (544)
.+|+++||||-.. |.-. .+.+|.+ .+.+|.-.||-|-++.
T Consensus 62 ~fDAvvipgG~~~~~~L~~~~---~~~~fv~eay~h~KpI~a~~~~~~lL 108 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSG---RALHFVTEAFKHGKPIGAVGEGSDLL 108 (142)
T ss_pred HCCEEEECCCCCCHHHHCCCH---HHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 713688438877988864486---79999999997699799937729999
No 468
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.70 E-value=29 Score=15.31 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 44489999999999968982889854
Q gi|254780195|r 15 LGKGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 15 lGKGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
+|=|++--|+..+|..+|.+|+..-.
T Consensus 20 ~GlG~sG~a~a~~L~~~g~~v~~~D~ 45 (458)
T PRK01710 20 VGIGVSNIPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred EEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 97878899999999978897999989
No 469
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=38.65 E-value=20 Score=16.53 Aligned_cols=41 Identities=20% Similarity=0.474 Sum_probs=26.2
Q ss_pred CCCEEEECC-CCCCCCCHHHHHHHHHHHCCCCCHHHHH----HHHHHH
Q ss_conf 698399737-7786550168889988740476322355----769999
Q gi|254780195|r 346 GVHGILVPG-GFGKRGSEGKIAAIKFARENKIPFLGIC----FGMQMA 388 (544)
Q Consensus 346 ~~dGIlVPG-GFG~RGieGkI~Ai~yARen~iP~LGIC----lGmQ~a 388 (544)
..++|+|.| ||..+++---+.-+. ++.++|+++++ .|+.++
T Consensus 23 ~~~~iliTgKG~Pd~~TR~fl~~L~--~~~~lpv~~l~D~DP~Gi~I~ 68 (160)
T cd00223 23 RNNCILITGKGYPDRATRRFLRRLH--EELDLPVYILVDGDPYGISIL 68 (160)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH--HHHCCCEEEEECCCCCCEEEE
T ss_conf 4888999468888789999999999--987898899975886610677
No 470
>TIGR01383 not_thiJ DJ-1 family protein; InterPro: IPR006287 These sequences represent the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by IPR006286 from INTERPRO, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras . Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ (thiamine pyridinylase), a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of Escherichia coli. The ThiJ designation for this family may be spurious; the cited paper refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. This group of proteins are classified as either DJ-1 putative peptidases or non-peptidase homologs in MEROPS peptidase family C56 (clan PC(C)). .
Probab=38.49 E-value=16 Score=17.10 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=23.0
Q ss_pred HHCCCCEEEECCCCCC----CCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 6216983997377786----55016888998874047632235576
Q gi|254780195|r 343 HFYGVHGILVPGGFGK----RGSEGKIAAIKFARENKIPFLGICFG 384 (544)
Q Consensus 343 ~L~~~dGIlVPGGFG~----RGieGkI~Ai~yARen~iP~LGIClG 384 (544)
....+|.|+.|||++= |-.+=-...++--.+.+.=.=-||-.
T Consensus 63 ~~~~fD~ivLPGG~pGa~nL~~S~~l~~~lk~~~~~gkl~AAICAa 108 (186)
T TIGR01383 63 DDEEFDLIVLPGGMPGAENLRDSKLLENLLKKQESKGKLVAAICAA 108 (186)
T ss_pred CCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHH
T ss_conf 7777677893698226664202578999999999749938842045
No 471
>pfam05422 SIN1 Stress-activated map kinase interacting protein 1 (SIN1). This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The fission yeast Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent.
Probab=38.47 E-value=15 Score=17.35 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=10.4
Q ss_pred CCEEEEEEECCCCEE
Q ss_conf 986899983899849
Q gi|254780195|r 496 HALPEVVEYINHPWF 510 (544)
Q Consensus 496 ~~lvEiiEl~~Hpff 510 (544)
|..+||--.++-.||
T Consensus 414 GEkIEIDP~~saKFw 428 (482)
T pfam05422 414 GEYVEIMQSESAKFW 428 (482)
T ss_pred CCEEEECCCCCCCCC
T ss_conf 436986235566521
No 472
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=38.27 E-value=29 Score=15.27 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHCC--CEEEEEEECC
Q ss_conf 444899999999999689--8288985445
Q gi|254780195|r 15 LGKGVAAASLGALLQAHK--YKVRVRKLDP 42 (544)
Q Consensus 15 lGKGi~aaSig~lLk~~g--~~v~~~K~DP 42 (544)
+|-||+.+|+|..|+.++ ++|.++-=-.
T Consensus 9 IGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 9 IGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 897389899999999738896599997057
No 473
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=38.25 E-value=21 Score=16.38 Aligned_cols=16 Identities=44% Similarity=0.879 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 4448999999999996
Q gi|254780195|r 15 LGKGVAAASLGALLQA 30 (544)
Q Consensus 15 lGKGi~aaSig~lLk~ 30 (544)
+|=||-||.+|.|||.
T Consensus 6 vGAGIMSATLGvLLk~ 21 (487)
T TIGR01320 6 VGAGIMSATLGVLLKE 21 (487)
T ss_pred ECCCHHHHHHHHHHHH
T ss_conf 6561668999999973
No 474
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=38.12 E-value=26 Score=15.62 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=27.0
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 7778655016888998874047632235576999999
Q gi|254780195|r 354 GGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVI 390 (544)
Q Consensus 354 GGFG~RGieGkI~Ai~yARen~iP~LGIClGmQ~avI 390 (544)
..+|.-|...||.|++.|.++++| .=||-|..--.|
T Consensus 213 s~~gtGGM~sKl~Aa~~a~~~Gi~-v~I~ng~~~~~i 248 (265)
T PRK12314 213 SKFGTGGMVTKLKAAKFLMEAGIK-MVLANGFNPSDI 248 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCHH
T ss_conf 887768648999999999978991-999708996289
No 475
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=38.11 E-value=20 Score=16.49 Aligned_cols=125 Identities=27% Similarity=0.294 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 48999999999996898288985445533488888864435078727984002556411332287477546801258999
Q gi|254780195|r 17 KGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGISTAKADNITAGRIYK 96 (544)
Q Consensus 17 KGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~l~~~~niT~Gkiy~ 96 (544)
+|+-.|.|+.+|..+||+|+=--+..|-++..
T Consensus 16 gG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~------------------------------------------------ 47 (459)
T COG0773 16 GGIGMSGLAEILLNLGYKVSGSDLAESPMTQR------------------------------------------------ 47 (459)
T ss_pred CCCCHHHHHHHHHHCCCCEECCCCCCCHHHHH------------------------------------------------
T ss_conf 50567999999996799117716652677899------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 99988857775774025646024898999970788987899972431222123068999999998749776857999974
Q gi|254780195|r 97 NVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLT 176 (544)
Q Consensus 97 ~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~~e~g~~~~n~~fiHvt 176 (544)
+ |+ +|.+ =.+||--+.| .++|++|+ +--+- ++.|=+++.|+....+=++++ .+--++-
T Consensus 48 --L--~~----~G~~-i~~gh~~~ni--------~~~~~VV~--s~Ai~--~~NpEi~~A~e~~ipi~~r~e-~L~elm~ 105 (459)
T COG0773 48 --L--EA----LGIE-IFIGHDAENI--------LDADVVVV--SNAIK--EDNPEIVAALERGIPVISRAE-MLAELMR 105 (459)
T ss_pred --H--HH----CCCE-EECCCCHHHC--------CCCCEEEE--ECCCC--CCCHHHHHHHHCCCCEECHHH-HHHHHHH
T ss_conf --9--97----8996-8679797885--------89965999--65657--999899999985998162899-9999970
Q ss_pred EEEEECCCC-CCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 675422566-20034789999999974998768999
Q gi|254780195|r 177 LMPYIRSSG-ELKTKPTQHSVKELQALGVHPDILLI 211 (544)
Q Consensus 177 lvP~l~~~g-E~KTKPTQhSVk~Lrs~GIqPDiivc 211 (544)
.=.-+..+| -=||--|-.-..-|-..|+.|-+++-
T Consensus 106 ~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 106 FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 771699947887540899999999867999879977
No 476
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=38.00 E-value=30 Score=15.24 Aligned_cols=39 Identities=33% Similarity=0.415 Sum_probs=30.7
Q ss_pred EEEECCEECCCCHHHHHHHHHHHHHH--CCCEEEEEEECCCCC
Q ss_conf 99937501444448999999999996--898288985445533
Q gi|254780195|r 5 IFITGGVVSSLGKGVAAASLGALLQA--HKYKVRVRKLDPYLN 45 (544)
Q Consensus 5 I~VtGGV~SglGKGi~aaSig~lLk~--~g~~v~~~K~DPYlN 45 (544)
|=|+|| ||-||-.+|..|..+|.. -+.+|..+-.|-|+-
T Consensus 2 IGIaG~--sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~ 42 (220)
T cd02025 2 IGIAGS--VAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 897889--98779999999999860026999489997878757
No 477
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=37.80 E-value=30 Score=15.22 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=77.8
Q ss_pred HCCCCEEEECCC------CCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEE
Q ss_conf 216983997377------786-5501688899887404763223557699999999875168899970003566664121
Q gi|254780195|r 344 FYGVHGILVPGG------FGK-RGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIA 416 (544)
Q Consensus 344 L~~~dGIlVPGG------FG~-RGieGkI~Ai~yARen~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~ 416 (544)
-.++||.+|.|. |-+ -=++-.-....|++.|=--.|-||-|-|.++--| -|++.-
T Consensus 97 ~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~----yGv~K~-------------- 158 (307)
T COG1897 97 DQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYF----YGVPKY-------------- 158 (307)
T ss_pred HCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----CCCCCC--------------
T ss_conf 45467159838853445700430699999999988642001356688888889998----098734--------------
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCEEEECCEEEE-ECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCC
Q ss_conf 15011234653001565546740231652578-55870668863798476602523332788998999789599998699
Q gi|254780195|r 417 LMSEWMKGDQQEKRLPSDDLGATMRLGAYDVS-LKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVD 495 (544)
Q Consensus 417 ~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~-l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d 495 (544)
-|++-. -|-|+-. +.|++++.+=.......---|| -+|+.+-+++ ...|.+-..|+.
T Consensus 159 ~l~~Kl-------------------~GVy~h~~l~p~~~l~rGfdd~f~~PhSR~-t~~~~e~i~~--~~~LeIL~es~e 216 (307)
T COG1897 159 TLPEKL-------------------SGVYKHDILSPHSLLTRGFDDSFLAPHSRY-TDVPKEDILA--VPDLEILAESKE 216 (307)
T ss_pred CCCHHH-------------------HCEEECCCCCCCCHHHCCCCCCCCCCCCCC-CCCCHHHHHH--CCCCEEEECCCC
T ss_conf 365434-------------------021221245866264426774323764222-4579999842--898513432664
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 98689998389984999724877327
Q gi|254780195|r 496 HALPEVVEYINHPWFIGVQYHPELKS 521 (544)
Q Consensus 496 ~~lvEiiEl~~HpffvgvQfHPEf~S 521 (544)
.+ +-++--+++. -+=+--||||-+
T Consensus 217 ~G-~~l~a~k~~r-~ifv~gH~EYD~ 240 (307)
T COG1897 217 AG-VYLLASKDGR-NIFVTGHPEYDA 240 (307)
T ss_pred CC-EEEEECCCCC-EEEEECCCCHHH
T ss_conf 53-6898627777-678717741025
No 478
>PRK05876 short chain dehydrogenase; Provisional
Probab=37.72 E-value=30 Score=15.21 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH
Q ss_conf 478999999997499876899923875899999
Q gi|254780195|r 190 KPTQHSVKELQALGVHPDILLIRADRDIPEMER 222 (544)
Q Consensus 190 KPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k 222 (544)
...+..+++|+..|.. +...+|+..-.++++
T Consensus 41 ~~l~~~~~~l~~~g~~--~~~~~~Dvt~~~~v~ 71 (275)
T PRK05876 41 PGLRQAVNHLRAEGFD--VHGVMCDVRHREEVT 71 (275)
T ss_pred HHHHHHHHHHHHCCCC--EEEEECCCCCHHHHH
T ss_conf 9999999999826984--799978889999999
No 479
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=37.63 E-value=28 Score=15.39 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHH---HHHC-CCCCHHHHHHHHHH
Q ss_conf 8888887873672416772256567234456621698399737778655016888998---8740-47632235576999
Q gi|254780195|r 312 EALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIK---FARE-NKIPFLGICFGMQM 387 (544)
Q Consensus 312 EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~---yARe-n~iP~LGIClGmQ~ 387 (544)
.-|.=.++-+-..=.+.|=+|.++.-. ...+.++.|--|- ||.|=.- +-||- =+-= +=+||=|+= +
T Consensus 373 p~l~GGSADLa~SN~T~~~~~~df~~~--~~~~~n~~GrYi~--~GvREfa--MgAI~NGiAlhGag~~p~GgTF----L 442 (675)
T TIGR00232 373 PELLGGSADLAPSNLTKLKGSGDFQLH--ENPLGNYAGRYIH--YGVREFA--MGAIMNGIALHGAGFKPYGGTF----L 442 (675)
T ss_pred CCCCCCCCHHCHHHCEEECCCCCCCCC--CCCCCCCCCCEEE--EEEEECH--HHHHHHHHHHHCCCCCCCCCHH----H
T ss_conf 201155301110013350476445435--2444234675488--7323044--7899999998358863254146----7
Q ss_pred HHHHHHHHCC
Q ss_conf 9999987516
Q gi|254780195|r 388 AVIEAARNLA 397 (544)
Q Consensus 388 avIEfARnvl 397 (544)
+-.+|+|+..
T Consensus 443 ~F~dY~~~Ai 452 (675)
T TIGR00232 443 VFVDYARPAI 452 (675)
T ss_pred HHHHHHHHHH
T ss_conf 8998655899
No 480
>PRK06398 aldose dehydrogenase; Validated
Probab=37.52 E-value=30 Score=15.19 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=24.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 399993750144444899999999999689828898544
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLD 41 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~D 41 (544)
|-++||||- ||+|+.+ ...|-..|.+|...-.+
T Consensus 7 KvalVTGgs-~GIG~ai-----a~~la~~Ga~V~~~~~~ 39 (256)
T PRK06398 7 KVVIVTGGS-SGIGLAI-----VSRFVDEGSKVVSISRS 39 (256)
T ss_pred CEEEEECCC-CHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 989996878-7899999-----99999869999999487
No 481
>pfam01973 MAF_flag10 Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.
Probab=37.40 E-value=30 Score=15.18 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=16.6
Q ss_pred HHHHHHHHCCCCCCEEEE
Q ss_conf 999999974998768999
Q gi|254780195|r 194 HSVKELQALGVHPDILLI 211 (544)
Q Consensus 194 hSVk~Lrs~GIqPDiivc 211 (544)
.+.+.|...||.||+++.
T Consensus 57 ~a~~~L~~~gI~Pd~~v~ 74 (169)
T pfam01973 57 SALKALLKHGIKPDIVVS 74 (169)
T ss_pred HHHHHHHHCCCCCEEEEE
T ss_conf 799999977998149999
No 482
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.29 E-value=30 Score=15.16 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCCCCEEEEEC
Q ss_conf 99999997499876899923
Q gi|254780195|r 194 HSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 194 hSVk~Lrs~GIqPDiivcRs 213 (544)
..+..|.+-| +|.|+.-.
T Consensus 46 ~~i~~~i~~~--vd~iii~~ 63 (282)
T cd06318 46 ADVEDLLTRG--VNVLIINP 63 (282)
T ss_pred HHHHHHHHCC--CCEEEEEC
T ss_conf 9999999769--98799811
No 483
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=37.21 E-value=30 Score=15.16 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECC--CCCCHHHHHHHHHHCCC
Q ss_conf 4789999999974998768999238--75899999999864198
Q gi|254780195|r 190 KPTQHSVKELQALGVHPDILLIRAD--RDIPEMERRKISLFCNV 231 (544)
Q Consensus 190 KPTQhSVk~Lrs~GIqPDiivcRse--~~l~~~~k~KIalfc~V 231 (544)
...+..++++++.|.+...+.|--. ..+..-+.+-.+.|..+
T Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 88 (265)
T PRK07097 45 ELVDKGLAAYRELGIEAHGYVCDVTDEDGIQAMVAQIEKEVGVI 88 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999549917999932899999999999999982999
No 484
>PRK08219 short chain dehydrogenase; Provisional
Probab=37.09 E-value=17 Score=17.04 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=13.7
Q ss_pred CEEEEEECCEECCCCHHHHH
Q ss_conf 23999937501444448999
Q gi|254780195|r 2 VKYIFITGGVVSSLGKGVAA 21 (544)
Q Consensus 2 ~KyI~VtGGV~SglGKGi~a 21 (544)
||-++||||- ||+|+.++-
T Consensus 3 mKvalITGas-~GIG~aia~ 21 (226)
T PRK08219 3 MPTALITGAS-RGIGAAIAR 21 (226)
T ss_pred CCEEEEECCC-HHHHHHHHH
T ss_conf 8999992846-499999999
No 485
>PRK07035 short chain dehydrogenase; Provisional
Probab=37.05 E-value=31 Score=15.14 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=17.1
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- ||+|+.++ ..|-..|.+|..
T Consensus 9 KvalITGas-~GIG~aia-----~~la~~Ga~V~i 37 (252)
T PRK07035 9 KIALVTGAS-RGIGEAIA-----KLLAQQGAHVIV 37 (252)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 989995887-49999999-----999987998999
No 486
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.03 E-value=31 Score=15.14 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489999999999968982889854
Q gi|254780195|r 17 KGVAAASLGALLQAHKYKVRVRKL 40 (544)
Q Consensus 17 KGi~aaSig~lLk~~g~~v~~~K~ 40 (544)
=|.+--|..++|..+|++|+.--.
T Consensus 13 lG~sG~s~a~~L~~~G~~v~~~D~ 36 (445)
T PRK04308 13 LGGTGISMIAYLRKNGAEVAAYDA 36 (445)
T ss_pred ECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899999999999978991999979
No 487
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=36.99 E-value=31 Score=15.13 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEC-CCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 200347899999999749987689992387589999999986419886772403-8986202668988764948899998
Q gi|254780195|r 186 ELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPA-LDVDDIYKVPLSYHREGIDSVVLNA 264 (544)
Q Consensus 186 E~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~-~Dv~sIY~VPl~l~~q~l~~~I~~~ 264 (544)
--|---.+-.++.|-++ .|+||+|+.. ....+.+|-.+.+| ||++ -|.+ =| -+.++
T Consensus 83 ~~kgEsl~Dt~~~l~~~---~D~iviR~~~---~~~~~~~a~~~~vP---VINa~~d~~----HP--------tQaL~-- 139 (308)
T PRK00779 83 LGRGEPIEDTARVLSRY---VDAIMIRTFE---HETLEELAEYSTVP---VINGLTDLS----HP--------CQILA-- 139 (308)
T ss_pred CCCCCCHHHHHHHHHHH---CCEEEEECCC---CCHHHHHHHHCCCC---EEECCCCCC----CC--------HHHHH--
T ss_conf 67897899999999854---7799993243---01189998748987---896788876----73--------89999--
Q ss_pred HCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 38788886204789999987418434379999520014813468888888888787367241677225656
Q gi|254780195|r 265 FGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETL 335 (544)
Q Consensus 265 L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~l 335 (544)
++-.+-+.... -+.++|++||... .|..|+..+....+.+ +..+..+.+
T Consensus 140 ------------Dl~Ti~e~~g~-l~gl~i~~vGD~~-------nV~~Sl~~~~~~~g~~--v~~~~P~~~ 188 (308)
T PRK00779 140 ------------DLLTIYEHRGS-IKGKTVAWVGDGN-------NVANSLLLAAALLGFD--LRVATPKGY 188 (308)
T ss_pred ------------HHHHHHHHHCC-CCCCEEEEECCCC-------CHHHHHHHHHHHCCCE--EEEECCCCC
T ss_conf ------------99999998386-7787599983874-------5399999999977998--999888302
No 488
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=36.85 E-value=31 Score=15.12 Aligned_cols=92 Identities=10% Similarity=0.120 Sum_probs=47.0
Q ss_pred HHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHH----HHH---CCCCE
Q ss_conf 89999987418434379999520014813468888888888787367241677225656723445----662---16983
Q gi|254780195|r 277 NWQTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPV----KHF---YGVHG 349 (544)
Q Consensus 277 ~W~~~~~~~~~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~----~~L---~~~dG 349 (544)
.=...++.+.. +..=+||++|.-.+...+. -=.+++.-|....+..++..|+...+.+.+... +.| ...+|
T Consensus 112 a~~~~~~~L~~-~G~~~I~~i~~~~~~~~~~-~R~~Gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 189 (275)
T cd06295 112 GGRLATEHLLA-RGRRRIAFLGGPQDMPEGE-ERLEGYREALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDA 189 (275)
T ss_pred HHHHHHHHHHH-HCCCEEEEECCCCCCCHHH-HHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 99999999998-0998798705886672699-999999999998699999417996577668799998889854999870
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 997377786550168889988740476
Q gi|254780195|r 350 ILVPGGFGKRGSEGKIAAIKFARENKI 376 (544)
Q Consensus 350 IlVPGGFG~RGieGkI~Ai~yARen~i 376 (544)
|+...- .-.+.++++++++++
T Consensus 190 i~~~nD------~~A~g~~~~~~~~g~ 210 (275)
T cd06295 190 VFAASD------LMALGALRALREAGR 210 (275)
T ss_pred EEECCC------HHHHHHHHHHHHCCC
T ss_conf 341475------878999999997499
No 489
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component; InterPro: IPR004702 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=36.81 E-value=12 Score=18.08 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECC
Q ss_conf 9999999987516889997000356666412115011234653001565546740231652578558
Q gi|254780195|r 385 MQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKE 451 (544)
Q Consensus 385 mQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~ 451 (544)
-+=+++|---|.-||+--|- |. +..|- | .+-..-.-|=|||+|.|-||-+=.|
T Consensus 35 ~~P~IV~klv~LTG~~Av~G--FK-~~~P~-----~------~~I~~~vIDCGGTLRCGiYP~~RIP 87 (334)
T TIGR00825 35 TKPAIVDKLVNLTGWKAVDG--FK-EGEPA-----E------EEIGVAVIDCGGTLRCGIYPKRRIP 87 (334)
T ss_pred CCHHHHHHHHHHCCHHHHCC--CC-CCCCC-----H------HCEEEEEEECCCCEECCCCCCCCCC
T ss_conf 97289999986225022113--35-78882-----1------5117899936882014778887677
No 490
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=21 Score=16.27 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHCCCCH-HHEEECCCCC-CHHHHHHHH---HHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 589999999986419886-7724038986-202668988---764948899998387888862047899999874
Q gi|254780195|r 216 DIPEMERRKISLFCNVPM-SAVIPALDVD-DIYKVPLSY---HREGIDSVVLNAFGIENVSLPQIDNWQTFCDRT 285 (544)
Q Consensus 216 ~l~~~~k~KIalfc~V~~-~~Vi~~~Dv~-sIY~VPl~l---~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~ 285 (544)
..-++.|+++|.|.|.+. +.|+-.++.. .|-.+-..| .++| |++|+..+.-. .++-.|..+.++.
T Consensus 66 ~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~g-deIv~s~~EH~----sn~~pw~~~~~~~ 135 (405)
T COG0520 66 DLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPG-DEIVVSDLEHH----SNIVPWQELAKRT 135 (405)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC-CEEEEECCCCC----CCHHHHHHHHHHC
T ss_conf 9999999999998199987729995983799999999702410689-98998046552----0089999999875
No 491
>PRK09135 pteridine reductase; Provisional
Probab=36.69 E-value=31 Score=15.10 Aligned_cols=29 Identities=41% Similarity=0.669 Sum_probs=17.3
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- +|+|+.++ ..|-..|.+|..
T Consensus 7 KvalVTGas-~GIG~aia-----~~la~~Ga~Vvi 35 (249)
T PRK09135 7 KVALITGGA-RRIGAAIA-----RTLHAAGYRVAV 35 (249)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 889996887-58999999-----999987998999
No 492
>KOG0612 consensus
Probab=36.68 E-value=4.9 Score=20.89 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=4.6
Q ss_pred HHHHHHHHHCCHH
Q ss_conf 2668988764948
Q gi|254780195|r 246 YKVPLSYHREGID 258 (544)
Q Consensus 246 Y~VPl~l~~q~l~ 258 (544)
|--|-+|..||-+
T Consensus 242 YISPEvLqs~~~~ 254 (1317)
T KOG0612 242 YISPEVLQSQGDG 254 (1317)
T ss_pred CCCHHHHHHHCCC
T ss_conf 6699999863477
No 493
>PRK10444 UMP phosphatase; Provisional
Probab=36.40 E-value=23 Score=15.97 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=32.3
Q ss_pred EEEECCCCC--CC--CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999724312--22--12306899999999874977685799997467542256620034789999999974998
Q gi|254780195|r 136 VICEIGGTI--GD--IEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVH 205 (544)
Q Consensus 136 ~ivEiGGTV--GD--IEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIq 205 (544)
+++-+-||+ |+ |++ =.|++++++. .|+ .++|+- +. -+++.+.-++.|+++|+.
T Consensus 4 il~DlDGvl~~g~~~ipg--a~e~l~~L~~-~g~---~~~fvT----------Nn-ss~s~~~~~~kL~~~Gl~ 60 (248)
T PRK10444 4 VICDIDGVLMHDNVAVPG--AAEFLHRILE-KGL---PLVLLT----------NY-PSQTGQDLANRFATAGVD 60 (248)
T ss_pred EEECCCCEEEECCEECCC--HHHHHHHHHH-CCC---EEEEEE----------CC-CCCCHHHHHHHHHHCCCC
T ss_conf 999075613889984869--9999999998-799---299993----------89-999999999999977999
No 494
>PRK08945 short chain dehydrogenase; Provisional
Probab=36.38 E-value=31 Score=15.07 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHHHHHCC-CCCCEEEEEC
Q ss_conf 899999999749-9876899923
Q gi|254780195|r 192 TQHSVKELQALG-VHPDILLIRA 213 (544)
Q Consensus 192 TQhSVk~Lrs~G-IqPDiivcRs 213 (544)
.|...++|.+.| .++.++.|..
T Consensus 50 l~~~~~el~~~~~~~~~~~~~d~ 72 (245)
T PRK08945 50 LEAVYDEIEAAGGPQPAIIPLDL 72 (245)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 99999999974798448999446
No 495
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR011858 This enzyme acts in the biosynthesis of histidine and has been characterised in Saccharomyces cerevisiae and Arabidopsis where it complements the Escherichia coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=36.16 E-value=31 Score=15.07 Aligned_cols=46 Identities=26% Similarity=0.487 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 387589999999986419886772403898620266898876494889999838788
Q gi|254780195|r 213 ADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIEN 269 (544)
Q Consensus 213 se~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~ 269 (544)
++-.|+++..+++|-||+ |=-|=+-||+=- .+|+|+.+..+|+=..
T Consensus 172 tD~eLn~e~L~~L~~ycd---EFLiHAADVEGl--------~~GIDE~LV~~LgEw~ 217 (274)
T TIGR02129 172 TDVELNEETLEELSKYCD---EFLIHAADVEGL--------CKGIDEELVKKLGEWS 217 (274)
T ss_pred EEEEECHHHHHHHHHHCC---CCEEEEEEECCC--------CCCCCHHHHHHHCCCC
T ss_conf 523307679998851037---212554442233--------4687579999843458
No 496
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=35.94 E-value=32 Score=15.02 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHEE
Q ss_conf 899923875899999999864198867724
Q gi|254780195|r 208 ILLIRADRDIPEMERRKISLFCNVPMSAVI 237 (544)
Q Consensus 208 iivcRse~~l~~~~k~KIalfc~V~~~~Vi 237 (544)
+|+.-+++..++++-+|||--|+|+++++.
T Consensus 136 vl~lE~~~lP~~~v~~~iA~~cgv~p~~l~ 165 (318)
T PRK02264 136 VLVLESDKLPDEEVAEKIAEECGVDPENVT 165 (318)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHEE
T ss_conf 999975889999999999998199967879
No 497
>pfam02289 MCH Cyclohydrolase (MCH). Methenyl tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is involved in methanogenesis in bacteria and archaea, producing methane from carbon monoxide or carbon dioxide.
Probab=35.91 E-value=32 Score=15.01 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHEE
Q ss_conf 899923875899999999864198867724
Q gi|254780195|r 208 ILLIRADRDIPEMERRKISLFCNVPMSAVI 237 (544)
Q Consensus 208 iivcRse~~l~~~~k~KIalfc~V~~~~Vi 237 (544)
+|+.-+++..++++-+|||--|+|+++++.
T Consensus 134 vl~lE~~~lP~~~v~~~iA~~cgv~p~~l~ 163 (312)
T pfam02289 134 VLVLESDKLPDEKVVEKVAKECGVDPENVY 163 (312)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHEE
T ss_conf 999975889999999999998199967879
No 498
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=35.88 E-value=32 Score=15.01 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHEE
Q ss_conf 899923875899999999864198867724
Q gi|254780195|r 208 ILLIRADRDIPEMERRKISLFCNVPMSAVI 237 (544)
Q Consensus 208 iivcRse~~l~~~~k~KIalfc~V~~~~Vi 237 (544)
+|+.-+++..++++-+|||--|+|+++++.
T Consensus 134 vl~lE~~~lP~~~v~~~iA~~cgv~p~~l~ 163 (312)
T TIGR03120 134 VIVLESDKLPDEEVAEYIADECGVDPENLT 163 (312)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHEE
T ss_conf 999975889999999999998199967879
No 499
>PRK09417 mogA molybdenum cofactor biosynthesis protein; Provisional
Probab=35.87 E-value=32 Score=15.01 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCE-EEEECCCC--------------CCCCCCCHHHH
Q ss_conf 1258999999888577757740256460248989999707889878-99972431--------------22212306899
Q gi|254780195|r 90 TAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADF-VICEIGGT--------------IGDIEVMPFVE 154 (544)
Q Consensus 90 T~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv-~ivEiGGT--------------VGDIEs~pFlE 154 (544)
+||+.-.+.+++--.+.|--.. ++||-=.+.|++.+....++.++ +|+--||| |=|=|--=|-|
T Consensus 23 ~SGp~l~e~L~~~~~~~~~v~~-~iVpDd~~~I~~~L~~~~d~~~~dLIlTTGGTG~spRDvTPEAt~~vidkeiPG~~E 101 (192)
T PRK09417 23 KGIPALEEWLASALTSPWEIET-RLIPDEQDIIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAVADKEMPGFGE 101 (192)
T ss_pred CCHHHHHHHHHHHCCCCCEEEE-EEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf 7099999999984788818899-984697389999999998266988999778546797666588999987023844999
Q ss_pred HHHHHHHHC
Q ss_conf 999999874
Q gi|254780195|r 155 AIRQFGNEF 163 (544)
Q Consensus 155 AiRQl~~e~ 163 (544)
++|+..++.
T Consensus 102 ~mR~~sl~~ 110 (192)
T PRK09417 102 QMRQISLKF 110 (192)
T ss_pred HHHHHHHCC
T ss_conf 999987572
No 500
>PRK07806 short chain dehydrogenase; Provisional
Probab=35.79 E-value=32 Score=15.00 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 39999375014444489999999999968982889
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRV 37 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~ 37 (544)
|-++||||- ||+|+.|+ ..|-..|.+|..
T Consensus 7 KvalVTGas-~GIG~aiA-----~~la~~Ga~Vvi 35 (248)
T PRK07806 7 KIALVTGSS-RGIGAEVA-----KYLAGAGAHVVV 35 (248)
T ss_pred CEEEEECCC-CHHHHHHH-----HHHHHCCCEEEE
T ss_conf 889993788-59999999-----999987998999
Done!