RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus
Liberibacter asiaticus str. psy62]
(544 letters)
>gnl|CDD|30850 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 801 bits (2071), Expect = 0.0
Identities = 313/543 (57%), Positives = 393/543 (72%), Gaps = 14/543 (2%)
Query: 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVT 62
KYIF+TGGVVSSLGKG+ AASLG LL+A KV ++KLDPYLN DPGTMSP QHGEVFVT
Sbjct: 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVT 61
Query: 63 DDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEI 122
DDG E DLD GHYERF+ ++ +K +NIT G+IY VI++ERRGDYLG TVQVIPH+T+EI
Sbjct: 62 DDGAETDLDLGHYERFLDVNLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEI 121
Query: 123 KEFITQGNE-DADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYI 181
K+ I + + AD VI EIGGT+GDIE +PF+EAIRQ E L+IH+TL+PYI
Sbjct: 122 KDRIREAADSTADVVIVEIGGTVGDIESLPFLEAIRQLRLELGR--ENVLFIHVTLVPYI 179
Query: 182 RSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALD 241
++GELKTKPTQHSVKEL+++G+ PDIL+ R++R +PE ERRKI+LFCNVP AVI A D
Sbjct: 180 AAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEAVISAPD 239
Query: 242 VDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKYI 301
V+ IY+VPL ++G+D +L + P + W+ D+ + K EV +A+VGKY+
Sbjct: 240 VESIYEVPLLLEKQGLDDYILERLNLNAPE-PDLSEWKDLVDKIKNPKKEVTIALVGKYV 298
Query: 302 HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS 361
L DAY+S+IEAL+H+G++ KV + WID+E LE+E+ + V GILVPGGFG RG
Sbjct: 299 ELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRGV 358
Query: 362 EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGV-PVIALMSE 420
EGKIAAI++AREN IPFLGIC GMQ+AVIE ARN+ G+ A STEF PV+ LM E
Sbjct: 359 EGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPE 418
Query: 421 WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYRE 480
DLG TMRLGAY LK TL +++YG D I ERHRHRYEVN YR+
Sbjct: 419 QKDV---------VDLGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRD 469
Query: 481 KLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY 540
+LE GL FSG S D L E+VE +HP+F+ Q+HPE KSRPL PHPLFV F++A + Y
Sbjct: 470 QLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEY 529
Query: 541 SQS 543
+
Sbjct: 530 KKD 532
>gnl|CDD|37598 KOG2387, KOG2387, KOG2387, CTP synthase (UTP-ammonia lyase)
[Nucleotide transport and metabolism].
Length = 585
Score = 569 bits (1468), Expect = e-163
Identities = 256/560 (45%), Positives = 360/560 (64%), Gaps = 35/560 (6%)
Query: 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFV 61
+KY+ +TGGV+S +GKG+ A+S+G LL++ +V K+DPYLN D GTMSP +HGEVFV
Sbjct: 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFV 60
Query: 62 TDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNE 121
DDGGE DLD G+YERF+ I+ + +NIT G+IY++VI++ERRGDYLG TVQV+PH+T+
Sbjct: 61 LDDGGEVDLDLGNYERFLDITLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDA 120
Query: 122 IKEFI-------TQGNED-ADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYI 173
I+++I G D + E+GGT+GDIE MPFVEA+RQF +F I
Sbjct: 121 IQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFVEALRQF--QFKVGRENFCLI 178
Query: 174 HLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPM 233
H++L+P + +GE KTKPTQHSV++L+ LG+ PD++ R+ + + + KIS+FC+V
Sbjct: 179 HVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGP 238
Query: 234 SAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSL--PQIDNWQTFCDRTLSLKNE 291
V+ DV IY VPL +GI + G+ +S P +D W +R L+
Sbjct: 239 EQVVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVP 298
Query: 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLE----KEDPVKH---- 343
V++A+VGKY L D+Y S+++AL H+ ++ K+++ WID+ LE +EDP K+
Sbjct: 299 VRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAW 358
Query: 344 --FYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPN 401
GILVPGGFG RG EGKI A K+ARENKIPFLGIC GMQ+AVIE ARN+ G+ +
Sbjct: 359 QKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKD 418
Query: 402 ACSTEF-SEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLK-EETLISRIY 459
A STEF E PV+ M E K +G TMRLG+ + +++ + ++Y
Sbjct: 419 ANSTEFDPETKNPVVIFMPEHNKT----------HMGGTMRLGSRRTVFQDKDSKLRKLY 468
Query: 460 G-LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPE 518
G ++ + ERHRHRYEVN ++LE GL F G V E++E +HP+F+GVQ+HPE
Sbjct: 469 GNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPE 528
Query: 519 LKSRPLDPHPLFVSFIQATV 538
KSRP P PLF+ + A+
Sbjct: 529 FKSRPDKPSPLFLGLVAASC 548
>gnl|CDD|48377 cd03113, CTGs, CTP synthetase (CTPs) is a two-domain protein, which
consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent ammonia to the
acceptor substrate at the synthetase domain to form an
aminated product. Glutaminase domains have evolved from
the same ancestor, whereas the synthetase domains are
evolutionarily unrelated and have different functions.
This protein family is classified based on the
N-terminal synthetase domain..
Length = 255
Score = 413 bits (1064), Expect = e-116
Identities = 161/257 (62%), Positives = 203/257 (78%), Gaps = 4/257 (1%)
Query: 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVT 62
KYIF+TGGVVSSLGKG+ AASLG LL+A KV +KLDPYLN DPGTMSP QHGEVFVT
Sbjct: 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVT 60
Query: 63 DDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEI 122
DDG E DLD GHYERF+ + ++ +NIT G+IY +VI++ERRGDYLG TVQVIPH+T+EI
Sbjct: 61 DDGAETDLDLGHYERFLDTNLSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEI 120
Query: 123 KEFITQGNE--DADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180
KE I + E AD VI EIGGT+GDIE +PF+EAIRQ E L+IH+TL+PY
Sbjct: 121 KERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELG--RENVLFIHVTLVPY 178
Query: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240
++++GELKTKPTQHSVKEL+++G+ PDIL+ R+++ +P R KI+LFC+VP AVI A
Sbjct: 179 LKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAVISAP 238
Query: 241 DVDDIYKVPLSYHREGI 257
DVD+IY+VPL ++G+
Sbjct: 239 DVDNIYEVPLLLEQQGL 255
>gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in Cytidine Triphosphate
Synthetase. Type 1 glutamine amidotransferase (GATase1)
domain found in Cytidine Triphosphate Synthetase (CTP).
CTP is involved in pyrimidine
ribonucleotide/ribonucleoside metabolism. CTPs produce
CTP from UTP and glutamine and regulate intracellular
CTP levels through interactions with four ribonucleotide
triphosphates. The enzyme exists as a dimer of identical
chains that aggregates as a tetramer. CTP is derived
form UTP in three separate steps involving two active
sites. In one active site, the UTP O4 oxygen is
activated by Mg-ATP-dependent phosphorylation, followed
by displacement of the resulting 4-phosphate moiety by
ammonia. At a separate site, ammonia is generated via
rate limiting glutamine hydrolysis (glutaminase)
activity. A gated channel that spans between the
glutamine hydrolysis and amidoligase active sites
provides a path for ammonia diffusion. CTPs belong to
the triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 235
Score = 360 bits (926), Expect = e-100
Identities = 138/244 (56%), Positives = 174/244 (71%), Gaps = 10/244 (4%)
Query: 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGIL 351
V++A+VGKY+ L DAY S++EAL+H+G++ K+++ WID+E LE+E+ + G GIL
Sbjct: 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGIL 60
Query: 352 VPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEF-SEA 410
VPGGFG RG EGKI AIK+AREN IPFLGIC GMQ+AVIE ARN+ G+P+A STEF +
Sbjct: 61 VPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDT 120
Query: 411 GVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRH 470
PV+ LM E Q+ DLG TMRLGAY V LK TL + YG D + ERHRH
Sbjct: 121 PHPVVDLMPE-----QKGV----KDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRH 171
Query: 471 RYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLF 530
RYEVN Y ++LE GL+FSG D L E+VE +HP+F+G Q+HPE KSRPL PHPLF
Sbjct: 172 RYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLF 231
Query: 531 VSFI 534
V F+
Sbjct: 232 VGFV 235
>gnl|CDD|143892 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 187
Score = 125 bits (317), Expect = 2e-29
Identities = 55/237 (23%), Positives = 77/237 (32%), Gaps = 52/237 (21%)
Query: 302 HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS 361
L D S L + +V++ D E + GI++ G G G
Sbjct: 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEE----ILELLNPDGIIISPGPGSPGD 56
Query: 362 -EGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSE 420
G I AIK RENKIP LGIC G Q+ + VI
Sbjct: 57 AGGAIEAIKELRENKIPILGICLGHQLLALAFGG------------------KVI----- 93
Query: 421 WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGL-DLIPERHRHRYEVNVRYR 479
+ G +G YGL ++ R H Y V+
Sbjct: 94 ---------KAKEPHHGKNSPVGHDK---------GLFYGLPNVFIVRRYHSYAVD---- 131
Query: 480 EKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536
GL+ + S + + + +P GVQ+HPE P P LF I+
Sbjct: 132 PDTLPDGLEVTAASDNGGEIMAIRHKENP-IFGVQFHPESSLTPGGPELLFNFLIKL 187
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 59.1 bits (143), Expect = 3e-09
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 294 VAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVP 353
VA++ + S ++ALR +G +V + D +E + + + G+++P
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGA----EVDVVSPDGGPVESDVDLDDY---DGLILP 53
Query: 354 GGFG----KRGSEGKIAAIKFARENKIPFLGICFGMQMAVI 390
GG G E +A ++ A P LGIC G Q+ V+
Sbjct: 54 GGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVL 94
>gnl|CDD|32254 COG2071, COG2071, Predicted glutamine amidotransferases [General
function prediction only].
Length = 243
Score = 56.5 bits (136), Expect = 2e-08
Identities = 44/215 (20%), Positives = 74/215 (34%), Gaps = 51/215 (23%)
Query: 347 VHGILVPGG-------FGKRGSEGK-----------IAAIKFARENKIPFLGICFGMQMA 388
+ G+++ GG +G+ SE +A I+ A E IP LGIC G+Q+
Sbjct: 61 IDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLL 120
Query: 389 VIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVS 448
+ L + SE + + V
Sbjct: 121 NVALGGTLY-------QDISE----QPGHIDHRQPNPVHIESHE--------------VH 155
Query: 449 LKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHP 508
++ + +++I G H + +KL GL + D E VE N
Sbjct: 156 IEPGSKLAKILGESEFMVNSFHHQAI-----KKL-APGLVVEARAPD-GTVEAVEVKNDA 208
Query: 509 WFIGVQYHPELKSRPLDP-HPLFVSFIQATVLYSQ 542
+ +GVQ+HPE LF +F+ A ++
Sbjct: 209 FVLGVQWHPEYLVDTNPLSLALFEAFVNACKKHAA 243
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to be
a serine peptidase having a Ser-His-Glu catalytic triad
which differs from the Cys-His-Glu catalytic triad of
typical GATase1 domains, by having a Ser in place of the
reactive Cys at the nucleophile elbow. The E. coli HP-II
C-terminal domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 54.5 bits (131), Expect = 6e-08
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 294 VAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVP 353
VA++ + S ++ALR +G +V + D +E + + + G+++P
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGA----EVDVVSPDGGPVESDVDLDDY---DGLILP 53
Query: 354 GGFG----KRGSEGKIAAIKFARENKIPFLGICFGMQM 387
GG G E +A ++ A P LGIC G Q+
Sbjct: 54 GGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 37.5 bits (88), Expect = 0.010
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 20/86 (23%)
Query: 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG-G-FG----KRGS 361
RS+ AL G +V ++ D E + D +++PG G FG
Sbjct: 12 RSVANALERLGA----EVIIT-SDPEEILSAD---------KLILPGVGAFGDAMANLRE 57
Query: 362 EGKIAAIKFARENKIPFLGICFGMQM 387
G I A+K A + PFLGIC GMQ+
Sbjct: 58 RGLIEALKEAIASGKPFLGICLGMQL 83
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 36.5 bits (85), Expect = 0.020
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 365 IAAIKFARENKIPFLGICFGMQM 387
I+ A P LGIC G Q+
Sbjct: 71 KELIRQALAAGKPVLGICLGHQL 93
>gnl|CDD|30467 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 36.3 bits (84), Expect = 0.023
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 26/89 (29%)
Query: 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG---------GFGK 358
RS+ +AL G +V +S D E + K D +++PG +
Sbjct: 15 RSVKKALERLGA----EVVVS-RDPEEILKAD---------KLILPGVGAFGAAMANLRE 60
Query: 359 RGSEGKIAAIKFARENKIPFLGICFGMQM 387
RG I AIK A E+ PFLGIC GMQ+
Sbjct: 61 RGL---IEAIKEAVESGKPFLGICLGMQL 86
>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 189
Score = 35.6 bits (83), Expect = 0.038
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 365 IAAIKFARENKIPFLGICFGMQM 387
+A ++ A E P LGIC GMQ+
Sbjct: 90 LALLRAALERGKPILGICRGMQL 112
Score = 32.9 bits (76), Expect = 0.23
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 500 EVVEYINHPWFIGVQYHPE 518
E +E + P+ +GVQ+HPE
Sbjct: 154 EAIESPDRPFVLGVQWHPE 172
>gnl|CDD|30396 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 35.1 bits (81), Expect = 0.055
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGF--GKRGSEGKI 365
+ A +G + W + L D G+++PGGF G G I
Sbjct: 17 YDMAAAFERAGFE----AEDVWHS-DLLLGRD-------FDGVVLPGGFSYGDYLRAGAI 64
Query: 366 AAI--------KFARENKIPFLGICFGMQM 387
AAI +FA + K P LGIC G Q+
Sbjct: 65 AAIAPVMDEVREFAEKGK-PVLGICNGFQI 93
>gnl|CDD|30851 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino
acid transport and metabolism / Nucleotide transport and
metabolism].
Length = 368
Score = 32.9 bits (75), Expect = 0.22
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 499 PEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQ 535
E + + + P F VQYHPE P D LF FI+
Sbjct: 325 VEGIRHKDLPAF-SVQYHPEASPGPHDTRYLFDEFIE 360
Score = 32.1 bits (73), Expect = 0.39
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 331 DAETLEKEDPVKHFYGVHGILVPGGFG--KRGSEGKIAAIKFARENKIPFLGICFGMQM 387
AE + +P GI + G G I IK KIP GIC G Q+
Sbjct: 212 SAEEILALNP-------DGIFLSNGPGDPAPLDYA-IETIKELLGTKIPIFGICLGHQL 262
>gnl|CDD|145019 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain.
This family consists of various cobyrinic acid
a,c-diamide synthases. These include CbiA and CbiP from
S.typhimurium, and CobQ from R. capsulatus. These
amidases catalyse amidations to various side chains of
hydrogenobyrinic acid or cobyrinic acid a,c-diamide in
the biosynthesis of cobalamin (vitamin B12) from
uroporphyrinogen III. Vitamin B12 is an important
cofactor and an essential nutrient for many plants and
animals and is primarily produced by bacteria. The
family also contains dethiobiotin synthetases as well
as the plasmid partitioning proteins of the MinD/ParA
family.
Length = 212
Score = 32.0 bits (73), Expect = 0.37
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 5 IFIT---GGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFV 61
I I GGV GK AA+L L Y+V + LDP N +V
Sbjct: 1 IAIAGTKGGV----GKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLK 56
Query: 62 TDD 64
Sbjct: 57 EGL 59
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 32.1 bits (74), Expect = 0.44
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 373 ENKIPFLGICFGMQM 387
E +P LGIC+GMQ+
Sbjct: 68 ELGVPVLGICYGMQL 82
>gnl|CDD|109901 pfam00863, Peptidase_C4, Peptidase family C4. This peptidase is
present in the nuclear inclusion protein of potyviruses.
Length = 233
Score = 31.8 bits (73), Expect = 0.51
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 182 RSSGELKTKPTQH---SVKELQALGVHP----DILLIRADRDIPEMERR 223
R++G L + +QH +VK L VHP DI++IR +D P ++
Sbjct: 50 RNNGTLTIR-SQHGEFTVKNTTQLKVHPIEGRDIVIIRLPKDFPPFPQK 97
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent
form of carbamoyl phosphate synthase, CPSase II. This
group of sequences represents the small chain of the
glutamine-dependent form of carbamoyl phosphate
synthase, CPSase II. CPSase II catalyzes the production
of carbomyl phosphate (CP) from bicarbonate, glutamine
and two molecules of MgATP. The reaction is believed to
proceed by a series of four biochemical reactions
involving a minimum of three discrete highly reactive
intermediates. The synthesis of CP is critical for the
initiation of two separate biosynthetic pathways. In one
CP is coupled to aspartate, its carbon and nitrogen
nuclei ultimately incorporated into the aromatic
moieties of pyrimidine nucleotides. In the second
pathway CP is condensed with ornithine at the start of
the urea cycle and is utilized for the detoxification of
ammonia and biosynthesis of arginine. CPSases may be
encoded by one or by several genes, depending on the
species. The E.coli enzyme is a heterodimer consisting
of two polypeptide chains referred to as the small and
large subunit. Ammonia an intermediate during the
biosynthesis of carbomyl phosphate produced by the
hydrolysis of glutamine in the small subunit of the
enzyme is delivered via a molecular tunnel between the
remotely located carboxyphosphate active site in the
large subunit. CPSase IIs belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site. This
group also contains the sequence from the mammalian urea
cycle form which has lost the active site Cys, resulting
in an ammonia-dependent form, CPSase I.
Length = 178
Score = 31.7 bits (73), Expect = 0.54
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 17/60 (28%)
Query: 491 GFSVDHA-LPEVVE--YIN-------------HPWFIGVQYHPELKSRPLDPHPLFVSFI 534
G++VD LP +E ++N P F VQ+HPE P D LF F+
Sbjct: 120 GYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVF-SVQFHPEASPGPHDTEYLFDEFL 178
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent
conversion of formylglycinamide ribonucleotide (FGAR)
and glutamine to formylglycinamidine ribonucleotide
(FGAM), ADP, Pi, and glutamate in the fourth step of the
purine biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having
a conserved Cys-His-Glu catalytic triad in the
glutaminase active site.
Length = 238
Score = 31.4 bits (72), Expect = 0.65
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 313 ALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGF--GKR-GSEGKIAA-- 367
A +G + + W + + L + + G+++PGGF G + G IAA
Sbjct: 18 AFELAGF----EAEDVWHN-DLLAGRKDLDDY---DGVVLPGGFSYGDYLRA-GAIAAAS 68
Query: 368 -------IKFARENKIPFLGICFGMQM 387
+FA LGIC G Q+
Sbjct: 69 PLLMEEVKEFAERGG-LVLGICNGFQI 94
>gnl|CDD|58169 cd03522, MoeA_like, MoeA_like. This domain is similar to a domain
found in a variety of proteins involved in biosynthesis
of molybdopterin cofactor, like MoaB, MogA, and MoeA.
There this domain is presumed to bind molybdopterin. The
exact function of this subgroup is unknown..
Length = 312
Score = 31.3 bits (71), Expect = 0.70
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 11/109 (10%)
Query: 76 ERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADF 135
E + G K + R+ G L ++PH I I + E
Sbjct: 170 EVYGGRIEDKFGPVLRARL-------AALGVEL-VEQVIVPHDEAAIAAAIAEALEAGAE 221
Query: 136 VICEIGGTIGDIE-VMPFVEAIRQFGNEFSHRGSKALYIHLTLMPYIRS 183
++ GG D + V P AIR G E G +L L+ Y+
Sbjct: 222 LLILTGGASVDPDDVTP--AAIRAAGGEVIRYGMPVDPGNLLLLGYLGG 268
>gnl|CDD|153221 cd01750, GATase1_CobQ, Type 1 glutamine amidotransferase (GATase1)
domain found in Cobyric Acid Synthase (CobQ). Type 1
glutamine amidotransferase (GATase1) domain found in
Cobyric Acid Synthase (CobQ). CobQ plays a role in
cobalamin biosythesis. CobQ catalyses amidations at
positions B, D, E, and G on adenosylcobyrinic
A,C-diamide in the biosynthesis of cobalamin. CobQ
belongs to the triad family of amidotransferases. Two
of the three residues of the catalytic triad that are
involved in glutamine binding, hydrolysis and transfer
of the resulting ammonia to the acceptor substrate in
other triad aminodotransferases are conserved in CobQ.
Length = 194
Score = 31.1 bits (71), Expect = 0.78
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 367 AIKFARENKIPFLGICFGMQM 387
AIK P LGIC G QM
Sbjct: 64 AIKNYARAGGPVLGICGGYQM 84
>gnl|CDD|153218 cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase
catalyzes the cleavage of the gamma-glutamyl chain of
folylpoly-gamma-glutamyl substrates and is a central
enzyme in folyl and antifolyl poly-gamma-glutamate
metabolism. GATase activity involves the removal of the
ammonia group from a glutamate molecule and its
subsequent transfer to a specific substrate, thus
creating a new carbon-nitrogen group on the substrate.
gamma-Glutamyl hydrolases belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 273
Score = 30.8 bits (70), Expect = 1.0
Identities = 44/193 (22%), Positives = 63/193 (32%), Gaps = 55/193 (28%)
Query: 347 VHGILVPGG--FGKRGSEGKIAAIKF--ARENKI-----PFLGICFGMQMAVIEAARNLA 397
++GIL PGG + A I + A E P G C G ++ +
Sbjct: 55 INGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETL 114
Query: 398 GIPNACSTEFSEAGVPVIALMSEWMKGDQQE----KRLPSDDLGATMRLGAYDVSLKEET 453
+ +T + + D + KR P D L SL E
Sbjct: 115 LLEATEATNSA---------LPLNFTEDALQSRLFKRFPPDLL----------KSLATEP 155
Query: 454 LISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSV-----DHALPE---VVEYI 505
L + HRY ++ E GL F+V D E VE
Sbjct: 156 LTM-----------NNHRYGIS---PENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAY 201
Query: 506 NHPWFIGVQYHPE 518
+P + GVQ+HPE
Sbjct: 202 KYPIY-GVQWHPE 213
>gnl|CDD|133630 CHL00188, hisH, imidazole glycerol phosphate synthase subunit hisH;
Provisional.
Length = 210
Score = 30.6 bits (69), Expect = 1.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 347 VHGILVPG------GFGKRGSEGKIAAIKFARENKIPFLGICFGMQM 387
VH +++PG K +G I IK PF+GIC G+ +
Sbjct: 40 VHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHL 86
>gnl|CDD|164573 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific
small subunit; Provisional.
Length = 382
Score = 30.1 bits (68), Expect = 1.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 510 FIGVQYHPELKSRPLDPHPLFVSFIQ 535
+ VQYHPE P D LF FI+
Sbjct: 347 YFSVQYHPEASPGPHDADYLFEYFIE 372
>gnl|CDD|36772 KOG1559, KOG1559, KOG1559, Gamma-glutamyl hydrolase [Coenzyme
transport and metabolism].
Length = 340
Score = 30.0 bits (67), Expect = 1.9
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 335 LEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARE-------NKIPFLGICFGMQM 387
+E + V+G++ GG+ KRG ++ F + P GIC G ++
Sbjct: 100 EPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL 159
Query: 388 AVIEAARN 395
+ ++N
Sbjct: 160 LSMIISQN 167
>gnl|CDD|34896 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
trafficking and secretion].
Length = 1263
Score = 29.6 bits (66), Expect = 2.3
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 183 SSGELKTKPTQ--HSVKE-LQALGVHPDIL-LIRADRDIPEMERRKISLFCNVPMSAVIP 238
K Q + VKE L+ + DIL L+R D I +R ++S + ++
Sbjct: 1021 VPNSQKHVNVQLFNEVKERLEVASIQDDILRLVRVDPRIDNNKREELSKQLD---GEILS 1077
Query: 239 ALDVDDIYKVPLSYH 253
++ + Y PL Y
Sbjct: 1078 LSELFNDYADPLKYP 1092
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 29.4 bits (67), Expect = 2.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 374 NKIPFLGICFGMQ 386
K+P LG+C G Q
Sbjct: 70 GKVPILGVCLGHQ 82
>gnl|CDD|146753 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 29.1 bits (66), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 446 DVSLKEETLISRIYGL-DLIPERHRHR 471
D + ETL RI L D++P R +
Sbjct: 44 DSDFENETLYDRIVALKDIVPPTTRRK 70
>gnl|CDD|30864 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 28.3 bits (63), Expect = 5.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 365 IAAIKFARENKIPFLGICFGMQM 387
IK A P LGIC G Q+
Sbjct: 69 KDLIKDAGVPGKPVLGICLGHQL 91
>gnl|CDD|34707 COG5104, PRP40, Splicing factor [RNA processing and modification].
Length = 590
Score = 28.2 bits (62), Expect = 5.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 286 LSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDP 340
LS E K A H +D +R+L+ L G Y ++ W +A L K+DP
Sbjct: 345 LSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYY---RMKWKNAYPLIKDDP 396
>gnl|CDD|35591 KOG0370, KOG0370, KOG0370, Multifunctional pyrimidine synthesis
protein CAD (includes carbamoyl-phophate synthetase,
aspartate transcarbamylase, and glutamine
amidotransferase) [General function prediction only].
Length = 1435
Score = 28.4 bits (63), Expect = 5.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 500 EVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQSL 544
E + + + P+F VQ+HPE P D LF FI+ +
Sbjct: 316 EGIMHSSKPFF-SVQFHPEATPGPHDTEYLFDVFIELVKKSKSTP 359
>gnl|CDD|36835 KOG1622, KOG1622, KOG1622, GMP synthase [Nucleotide transport and
metabolism].
Length = 552
Score = 28.4 bits (63), Expect = 5.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 375 KIPFLGICFGMQM 387
+P LGIC+GMQ+
Sbjct: 88 GVPVLGICYGMQL 100
>gnl|CDD|37025 KOG1814, KOG1814, KOG1814, Predicted E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 445
Score = 28.1 bits (62), Expect = 6.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 329 WIDAETLEKEDPVKHF 344
WI AE L E+P KHF
Sbjct: 398 WICAELLYPENPYKHF 413
>gnl|CDD|30858 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component
II [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 191
Score = 27.8 bits (62), Expect = 7.6
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 330 IDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQM 387
I E +E P I++ G G G + +IP LG+C G Q
Sbjct: 36 ISLELIEALKP-------DAIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQA 86
>gnl|CDD|38569 KOG3359, KOG3359, KOG3359, Dolichyl-phosphate-mannose:protein
O-mannosyl transferase [Posttranslational modification,
protein turnover, chaperones].
Length = 723
Score = 27.5 bits (61), Expect = 8.3
Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 465 PERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALP-------EVV--EYINHP---WFIG 512
+ R L GC LK SG LP EVV + W +
Sbjct: 442 DQERIKTLTTEFRLIHVLTGCYLKSSGKK----LPEWGFEQQEVVCAKNPRDKSTTWNVE 497
Query: 513 VQYHPELKSRPLDPHPLFVSFIQ 535
+P L R D +SF
Sbjct: 498 EHENPRLPERERDIVYPKLSFWA 520
>gnl|CDD|37236 KOG2025, KOG2025, KOG2025, Chromosome condensation complex
Condensin, subunit G [Chromatin structure and dynamics,
Cell cycle control, cell division, chromosome
partitioning].
Length = 892
Score = 27.7 bits (61), Expect = 9.0
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 283 DRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDA 332
DR S+K + AI+ ++ D +++E L VSN ++V + ++A
Sbjct: 241 DREFSVKGALVDAILSGWLRFSDG--NILELLERLDVSNSSEVAVKALEA 288
>gnl|CDD|34530 COG4921, COG4921, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 131
Score = 27.6 bits (61), Expect = 9.0
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 73 GHYERFMGIS-TAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE 131
GHY +S ADNI R + R L V+ E+ + ++
Sbjct: 17 GHYRVTACVSAEVDADNIFTVRDVNVFVVCTREPPNLRDLVE-------EVSRALNGLDK 69
Query: 132 DADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKA 170
+ + ++ E G + E A+ G F + + A
Sbjct: 70 EDEMIVAEPGEFFNEPEWRV--SAL--LGAPFKYAETVA 104
>gnl|CDD|31681 COG1492, CobQ, Cobyric acid synthase [Coenzyme metabolism].
Length = 486
Score = 27.5 bits (61), Expect = 9.7
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 12/41 (29%)
Query: 359 RGSEGKIAAIKFARENKI------------PFLGICFGMQM 387
GS+ IA +K RE + +GIC G QM
Sbjct: 297 PGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQM 337
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.139 0.412
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,858,860
Number of extensions: 384204
Number of successful extensions: 1024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 49
Length of query: 544
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 445
Effective length of database: 4,124,446
Effective search space: 1835378470
Effective search space used: 1835378470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)