RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus
Liberibacter asiaticus str. psy62]
(544 letters)
>gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated.
Length = 533
Score = 977 bits (2529), Expect = 0.0
Identities = 322/544 (59%), Positives = 398/544 (73%), Gaps = 13/544 (2%)
Query: 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVF 60
M KYIF+TGGVVSSLGKG+ AASLG LL+A KV ++KLDPY+N DPGTMSP QHGEVF
Sbjct: 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVF 60
Query: 61 VTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTN 120
VTDDG E DLD GHYERF+ + K +N+T G+IY +VI++ERRGDYLG TVQVIPH+T+
Sbjct: 61 VTDDGAETDLDLGHYERFIDTNLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITD 120
Query: 121 EIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180
EIKE I DAD VI EIGGT+GDIE +PF+EAIRQ E L+IHLTL+PY
Sbjct: 121 EIKERILAAGTDADVVIVEIGGTVGDIESLPFLEAIRQLRLELGRE--NVLFIHLTLVPY 178
Query: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240
I ++GELKTKPTQHSVKEL+++G+ PDIL+ R++R +PE E+RKI+LFCNVP AVI A
Sbjct: 179 IAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEAVISAP 238
Query: 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY 300
DVD IY+VPL H +G+D +VL G+E P + W+ +R + K EV +A+VGKY
Sbjct: 239 DVDSIYEVPLLLHEQGLDDIVLERLGLEAPE-PDLSEWEELVERLKNPKGEVTIALVGKY 297
Query: 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG 360
+ L DAY+S+IEAL+H+G++N KV + WID+E LE+E+ + GV GILVPGGFG+RG
Sbjct: 298 VELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG 357
Query: 361 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEF-SEAGVPVIALMS 419
EGKI AI++AREN IPFLGIC GMQ+AVIE ARN+ G+ +A STEF + PVI LM
Sbjct: 358 IEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMP 417
Query: 420 EWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYR 479
E DLG TMRLGAY LK TL + IYG + I ERHRHRYEVN +YR
Sbjct: 418 EQKDV---------SDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYR 468
Query: 480 EKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVL 539
E+LE GL FSG S D L E+VE +HPWF+GVQ+HPE KSRP PHPLF F++A +
Sbjct: 469 EQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALE 528
Query: 540 YSQS 543
+
Sbjct: 529 NKKR 532
>gnl|CDD|161825 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in
pyrimidine ribonucleotide/ribonucleoside metabolism. The
enzyme catalyzes the reaction L-glutamine + H2O + UTP +
ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
exists as a dimer of identical chains that aggregates as
a tetramer. This gene has been found circa 500 bp 5'
upstream of enolase in both beta (Nitrosomonas europaea)
and gamma (E.coli) subdivisions of proteobacterium (FEMS
Microbiol Lett 1998 Aug 1;165(1):153-7).
Length = 525
Score = 735 bits (1900), Expect = 0.0
Identities = 290/537 (54%), Positives = 373/537 (69%), Gaps = 16/537 (2%)
Query: 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVT 62
KYIF+TGGVVSSLGKG+ AAS+G LL+A KV + K+DPY+N DPGTMSP+QHGEVFVT
Sbjct: 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVT 61
Query: 63 DDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEI 122
DDG E DLD GHYERF+ + + +NIT G+IY +VI++ER+GDYLG TVQ+IPH+TNEI
Sbjct: 62 DDGAETDLDLGHYERFLDTNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEI 121
Query: 123 KEFITQG--NEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180
K+ I + D VI EIGGT+GDIE +PF+EAIRQF NE +IH+TL+PY
Sbjct: 122 KDRIKRVAKISGPDVVIVEIGGTVGDIESLPFLEAIRQFRNEVGR--ENVAFIHVTLVPY 179
Query: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240
I ++GE KTKPTQHSVKEL++LG+ PDI++ R+ + + KI+LFC+V AVI A
Sbjct: 180 IAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEAVINAH 239
Query: 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY 300
DV IY+VPL ++G+D + + + W+ ++ ++ K+EV + IVGKY
Sbjct: 240 DVSSIYEVPLLLLKQGLDDYLCRRLNLNCDE-ADLSEWEELVEKFINPKHEVTIGIVGKY 298
Query: 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG 360
+ LKD+Y S+IEAL+H+G TKV + WID+E LE+E + GV GILVPGGFG+RG
Sbjct: 299 VELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEG-AEFLKGVDGILVPGGFGERG 357
Query: 361 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEF-SEAGVPVIALMS 419
EGKI AIK+AREN IPFLGIC GMQ+AVIE ARN+ G+ A STEF E PV+ L+
Sbjct: 358 VEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLP 417
Query: 420 EWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYR 479
E DLG TMRLG Y LK TL ++YG + + ERHRHRYEVN YR
Sbjct: 418 EQKD---------ISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYR 468
Query: 480 EKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA 536
E+LE GL SG S D L E++E +HP+F+ Q+HPE SRP PHPLF+ F++A
Sbjct: 469 EQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525
>gnl|CDD|177961 PLN02327, PLN02327, CTP synthase.
Length = 557
Score = 581 bits (1501), Expect = e-166
Identities = 255/556 (45%), Positives = 348/556 (62%), Gaps = 34/556 (6%)
Query: 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVT 62
KY+ +TGGVVS LGKGV A+S+G LL+A +V K+DPYLN+D GTMSP +HGEVFV
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVL 61
Query: 63 DDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEI 122
DDGGE DLD G+YERF+ ++ + +NIT G+IY++VI++ERRGDYLG TVQV+PH+T+ I
Sbjct: 62 DDGGEVDLDLGNYERFLDVTLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAI 121
Query: 123 KEFITQ-------GNED-ADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIH 174
+E+I + G E AD + E+GGT+GDIE MPF+EA+RQF F IH
Sbjct: 122 QEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQF--SFRVGPGNFCLIH 179
Query: 175 LTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMS 234
++L+P + GE KTKPTQHSV+ L+ALG+ P IL R+ + + E + K+S FC+VP
Sbjct: 180 VSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAE 239
Query: 235 AVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSL-PQIDNWQTFCDRTLSLKNEVK 293
++ DV +I+ VPL + +L + +V+ P ++ W + +L V+
Sbjct: 240 NILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVR 299
Query: 294 VAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLE----KEDPVKH------ 343
+A+VGKY L D+Y S+++AL H+ V+ K+ + W+ A LE KE P +
Sbjct: 300 IAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKL 359
Query: 344 FYGVHGILVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNAC 403
G GILVPGGFG RG EGKI A K+ARENK+P+LGIC GMQ+AVIE AR++ G+ +A
Sbjct: 360 LKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDAN 419
Query: 404 STEFSEAGV-PVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLIS-RIYG- 460
STEF P + M E K +G TMRLG+ + S ++YG
Sbjct: 420 STEFDPETPNPCVIFMPEGSK----------THMGGTMRLGSRRTYFQTPDCKSAKLYGN 469
Query: 461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELK 520
+ + ERHRHRYEVN +LE GL F G E+VE +HP+F+GVQ+HPE K
Sbjct: 470 VSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFK 529
Query: 521 SRPLDPHPLFVSFIQA 536
SRP P PLF+ I A
Sbjct: 530 SRPGKPSPLFLGLIAA 545
>gnl|CDD|148179 pfam06418, CTP_synth_N, CTP synthase N-terminus. This family
consists of the N-terminal region of the CTP synthase
protein (EC:6.3.4.2). This family is found in
conjunction with pfam00117 located in the C-terminal
region of the protein. CTP synthase catalyses the
synthesis of CTP from UTP by amination of the pyrimidine
ring at the 4-position.
Length = 275
Score = 479 bits (1236), Expect = e-136
Identities = 165/278 (59%), Positives = 214/278 (76%), Gaps = 4/278 (1%)
Query: 2 VKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFV 61
KYIF+TGGVVSSLGKG+ AASLG LL++ KV ++K+DPYLN DPGTMSP QHGEVFV
Sbjct: 1 TKYIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYLNVDPGTMSPYQHGEVFV 60
Query: 62 TDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNE 121
TDDG E DLD GHYERF+ I+ K +NIT G+IY +VI++ERRGDYLG TVQVIPH+T+E
Sbjct: 61 TDDGAETDLDLGHYERFLDINLTKDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDE 120
Query: 122 IKEFITQ-GNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180
IKE I + + AD VI EIGGT+GDIE +PF+EAIRQF E L+IH+TL+PY
Sbjct: 121 IKERIRRVAAKGADVVIVEIGGTVGDIESLPFLEAIRQFRLEVGR--ENVLFIHVTLVPY 178
Query: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240
++++GELKTKPTQHSVKEL+++G+ PDIL+ R+++ + E + KI+LFCNVP AVI A
Sbjct: 179 LKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEAVISAP 238
Query: 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNW 278
DV+ IY+VPL ++G+D ++L G++ P + W
Sbjct: 239 DVESIYEVPLLLEKQGLDELILEKLGLDPKE-PDLSKW 275
>gnl|CDD|180452 PRK06186, PRK06186, hypothetical protein; Validated.
Length = 229
Score = 125 bits (316), Expect = 3e-29
Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 25/247 (10%)
Query: 292 VKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGI- 350
+++A+VG Y A++++ AL + V W+ + + + F GI
Sbjct: 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGF---DGIW 58
Query: 351 LVPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEF-SE 409
VPG R +G + AI+FAREN IPFLG C G Q A++E ARN+ G +A E E
Sbjct: 59 CVPGS-PYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPE 117
Query: 410 AGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHR 469
PVIA +S + D+ L+ +LI+R YG I E +
Sbjct: 118 GDRPVIAPLSCSLVEKTG------------------DIRLRPGSLIARAYGTLEIEEGYH 159
Query: 470 HRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPL 529
RY VN + LE L+ +G+ D VE HP+F+ + PE + P PL
Sbjct: 160 CRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAGRPPPL 218
Query: 530 FVSFIQA 536
+F++A
Sbjct: 219 VRAFLRA 225
>gnl|CDD|183101 PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase;
Provisional.
Length = 254
Score = 43.7 bits (103), Expect = 1e-04
Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 56/212 (26%)
Query: 349 GILVPGG--------FGKRGSE-----GK----IAAIKFARENKIPFLGICFGMQMAVIE 391
GI +PG +G+ G E G+ +A I A E +IP IC G+Q V+
Sbjct: 64 GIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA 123
Query: 392 AA----RNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDV 447
R L P E E +++ LP + A +++V
Sbjct: 124 TGGSLHRKLCEQP-----ELLE---------------HREDPELPVEQQYAP----SHEV 159
Query: 448 SLKEETLISRIYGLDLIPERHRHRYEVNVRYRE--KLEGCGLKFSGFSVDHALPEVVEYI 505
++E L+S L+PE + VN + + K+ L+ S D L E V I
Sbjct: 160 QVEEGGLLSA-----LLPECSN--FWVNSLHGQGAKVVSPRLRVEARSPD-GLVEAVSVI 211
Query: 506 NHPWFIGVQYHPELKSRPLD-PHPLFVSFIQA 536
NHP+ +GVQ+HPE S LF FI A
Sbjct: 212 NHPFALGVQWHPEWNSSEYALSRILFEGFITA 243
>gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyse
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 42.6 bits (101), Expect = 3e-04
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 53/193 (27%)
Query: 347 VHGILVPGG--------FGKRGSE-----------GKIAAIKFARENKIPFLGICFGMQ- 386
V G+L+ GG +G+ S ++A I+ A E P LGIC GMQ
Sbjct: 59 VDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGKPILGICRGMQL 118
Query: 387 MAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYD 446
+ V G G + D + ++
Sbjct: 119 LNVA------LG------------GTLYQDIPEHPGNSDHHHQLAVQY-------APSHA 153
Query: 447 VSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYIN 506
VSL+ +L++R+ G + I H + ++L GL+ + D E +E N
Sbjct: 154 VSLEPGSLLARLLGAEEILVNSLHHQAI-----KRL-APGLRVEATAPD-GTIEAIESPN 206
Query: 507 HPWF-IGVQYHPE 518
P+F +GVQ+HPE
Sbjct: 207 APYFVLGVQWHPE 219
>gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 200
Score = 37.9 bits (89), Expect = 0.006
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPG----GFGKRGSEG 363
RS+ +AL +G +V ++ D E + D GI++PG G
Sbjct: 14 RSVSKALERAG----AEVVIT-SDPEEILDAD---------GIVLPGVGAFGAAMENLSP 59
Query: 364 KIAAIKFARENKIPFLGICFGMQM 387
I A + PFLGIC GMQ+
Sbjct: 60 LRDVILEAARSGKPFLGICLGMQL 83
>gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 37.4 bits (87), Expect = 0.010
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 11/38 (28%)
Query: 352 VPGGFGKRGSEGKIAAIKFARENKIPFLGICFGMQMAV 389
VP GF + RE +P LGIC+GMQ+ V
Sbjct: 74 VPEGF-----------FDYCRERGVPVLGICYGMQLIV 100
>gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 205
Score = 36.3 bits (85), Expect = 0.021
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 365 IAAIKFARENKIPFLGICFGMQM 387
IK A + P LGIC GMQ+
Sbjct: 62 DEVIKEAVASGKPLLGICLGMQL 84
>gnl|CDD|162511 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
I. In some species, phosphoribosylformylglycinamidine
synthase is composed of a single polypeptide chain. This
model describes the PurQ protein of Bacillus subtilis
(where PurL, PurQ, and PurS are required for
phosphoribosylformylglycinamidine synthase activity) and
functionally equivalent proteins from other bacteria and
archaea.
Length = 227
Score = 36.2 bits (84), Expect = 0.024
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 308 RSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGF--GKRGSEGKI 365
R + ALR GV DAE + ED G+++PGGF G G I
Sbjct: 15 RDTVYALRLLGV-----------DAEIVWYED--GSLPDYDGVVLPGGFSYGDYLRAGAI 61
Query: 366 AA--------IKFARENKIPFLGICFGMQMAV 389
AA +FA + P LGIC G Q+ V
Sbjct: 62 AAASPIMQEVREFAEKGV-PVLGICNGFQILV 92
>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 199
Score = 35.6 bits (83), Expect = 0.030
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 363 GKIAAIKFARENKIPFLGICFGMQM 387
G A+K E K P LGIC GMQ+
Sbjct: 60 GLDEALKEHVEKKQPVLGICLGMQL 84
>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 35.1 bits (82), Expect = 0.046
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 349 GILVPG--GF-----GKRGSEGKIAAIKFARENKIPFLGICFGMQM 387
+++PG F G R A I+ PFLGIC GMQ+
Sbjct: 44 RVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQL 89
>gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional.
Length = 239
Score = 34.9 bits (81), Expect = 0.050
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 372 RENKIPFLGICFGMQMAVIEAARNLAG 398
+ENK PFLGIC G QM AR+L
Sbjct: 84 KENK-PFLGICLGAQM----LARHLGA 105
>gnl|CDD|162320 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small
subunit. This model represents the whole of the small
chain of the glutamine-dependent form (EC 6.3.5.5) of
carbamoyl phosphate synthase, CPSase II. The C-terminal
domain has glutamine amidotransferase activity. Note
that the sequence from the mammalian urea cycle form has
lost the active site Cys, resulting in an
ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases
of pyrimidine biosynthesis, arginine biosynthesis, and
the urea cycle may be encoded by one or by several
genes, depending on the species.
Length = 358
Score = 34.5 bits (80), Expect = 0.076
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 502 VEYINHPW--FIGVQYHPELKSRPLDPHPLFVSFIQ 535
VE I H VQYHPE P D LF FI
Sbjct: 319 VEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFID 354
Score = 30.7 bits (70), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 367 AIKFARE--NKIPFLGICFGMQM 387
AI+ R+ KIP GIC G Q+
Sbjct: 233 AIETIRKLLEKIPIFGICLGHQL 255
>gnl|CDD|179609 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 219
Score = 34.3 bits (80), Expect = 0.083
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 346 GVHGILVPGGF--GKRGSEGKIAA--------IKFARENKIPFLGICFGMQM 387
GV +++PGGF G G IAA +FA + K P LGIC G Q+
Sbjct: 41 GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK-PVLGICNGFQI 91
>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit. separate polypeptide
chains in most of the Archaea. This N-terminal region
would be the smaller subunit.
Length = 188
Score = 34.2 bits (79), Expect = 0.089
Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 35/182 (19%)
Query: 307 YRSLI-EALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKI 365
Y LI LR GV Y+++ + E + +++P GI++ GG +E
Sbjct: 10 YTQLIARRLRELGV--YSELVPNTTPLEEIREKNPK-------GIILSGGPSSVYAENAP 60
Query: 366 AAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACST-EFSEAGVPVI--------- 415
A + E +P LGIC+GMQ A+ L G E+ +A + ++
Sbjct: 61 RADEKIFELGVPVLGICYGMQ----LMAKQLGGEVGRAEKREYGKAELEILDEDDLFRGL 116
Query: 416 -ALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVS----LKEETLISRIYGLDLIPERHRH 470
+ WM + K LP G L D + E IYG+ PE
Sbjct: 117 PDESTVWMSHGDKVKELPE---GFK-VLATSDNCPVAAMAHEEK--PIYGVQFHPEVTHT 170
Query: 471 RY 472
Y
Sbjct: 171 EY 172
>gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 360
Score = 33.1 bits (77), Expect = 0.18
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 365 IAAIKFARENKIPFLGICFGMQM 387
I I+ E KIP GIC G Q+
Sbjct: 238 IEMIRELLEKKIPIFGICLGHQL 260
Score = 32.4 bits (75), Expect = 0.32
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 491 GFSVDHA-LPEVVE---------------YINHPWFIGVQYHPELKSRPLDPHPLFVSFI 534
GF+VD LP +E + + P F VQYHPE P D LF F+
Sbjct: 299 GFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAF-SVQYHPEASPGPHDSAYLFDEFV 357
>gnl|CDD|162754 TIGR02189, GlrX-like_plant, Glutaredoxin-like family. This family
of glutaredoxin-like proteins is aparrently limited to
plants. Multiple isoforms are found in A. thaliana and
O.sativa.
Length = 99
Score = 32.0 bits (73), Expect = 0.42
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 194 HSVKEL-QALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAV 236
H VK L LGV+P + I + ++E L C+ + AV
Sbjct: 22 HVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV 65
>gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ.
Length = 475
Score = 31.7 bits (72), Expect = 0.51
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 25/149 (16%)
Query: 9 GGVVSSLGKGVAAASLGALLQAHKYKVRVRK-----LDPYLNSDPGTMSPVQHGEVFVTD 63
G SS GK A L +L Y+V K L+ ++ + G ++ Q +
Sbjct: 4 VGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAA- 62
Query: 64 DGGEADLDFGHYERFMGISTAKADNITA-----GRIYKNVIDRERRGDYLGTTVQVIPHV 118
G E I N T+ GR ++ +E + + ++
Sbjct: 63 -GIEPS------VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKA---- 111
Query: 119 TNEIKEFITQGNEDADFVICEIGGTIGDI 147
IKE + + D+V+ E G+ +I
Sbjct: 112 ---IKESLEILAREYDYVVIEGAGSPAEI 137
>gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
glutamine amidotransferase subunit. This model
represents the glutamine amidotransferase subunit (or
domain, in eukaryotic systems) of imidazole glycerol
phosphate synthase. This subunit catalyzes step 5 of
histidine biosynthesis from PRPP. The other subunit, the
cyclase, catalyzes step 6.
Length = 196
Score = 31.5 bits (72), Expect = 0.52
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 371 ARENKIPFLGICFGMQM 387
P LGIC GMQ+
Sbjct: 67 VVRLGKPVLGICLGMQL 83
>gnl|CDD|180184 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated.
Length = 292
Score = 31.3 bits (72), Expect = 0.71
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 32/79 (40%)
Query: 360 GSEG-----KIA-AIKFARENKIPFLGICFG--------------MQMAVIEAARNLAGI 399
GS G KI A++ A E K P + F MQMA AA
Sbjct: 135 GSMGSVVGEKIVRAVERAIEEKCPL--VIFSASGGARMQEGLLSLMQMAKTSAALKR--- 189
Query: 400 PNACSTEFSEAGVPVIALM 418
SEAG+P I+++
Sbjct: 190 -------LSEAGLPYISVL 201
>gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed.
Length = 511
Score = 31.2 bits (72), Expect = 0.73
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 373 ENKIPFLGICFGMQ-MA 388
E +P LGIC+GMQ MA
Sbjct: 73 ELGVPVLGICYGMQLMA 89
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 196
Score = 31.0 bits (71), Expect = 0.92
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 24/62 (38%)
Query: 377 PFLGICFGMQMAVIEAARNLAGIPNACSTEFSE--AGVPVIALMSEWMKGDQQEKRLPSD 434
P LGIC GMQ+ E SE GV + ++ D K++
Sbjct: 72 PVLGICLGMQLL----------------GERSEESGGVDCLGII------DGPVKKMTDF 109
Query: 435 DL 436
L
Sbjct: 110 GL 111
>gnl|CDD|129606 TIGR00515, accD, acetyl-CoA carboxylase, carboxyl transferase, beta
subunit. The enzyme acetyl-CoA carboxylase contains a
biotin carboxyl carrier protein or domain, a biotin
carboxylase, and a carboxyl transferase. This model
represents the beta chain of the carboxyl transferase
for cases in which the architecture of the protein is as
in E. coli, in which the carboxyltransferase portion
consists of two non-identical subnits, alpha and beta.
Length = 285
Score = 30.9 bits (70), Expect = 0.96
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 22/66 (33%)
Query: 367 AIKFARENKIPFLGICFG------------MQMAVIEAARNLAGIPNACSTEFSEAGVPV 414
AI+ A E+ P + MQMA AA SE G+P
Sbjct: 147 AIEKALEDNCPLIIFSASGGARMQEALLSLMQMAKTSAALAK----------MSERGLPY 196
Query: 415 IALMSE 420
I+++++
Sbjct: 197 ISVLTD 202
>gnl|CDD|116299 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
domain.
Length = 158
Score = 30.7 bits (70), Expect = 1.0
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 347 VHGILVPGGFGKRG------SEGKIAAIKFARENKIPFLGICFGMQM 387
+++PGG + G A++ E P LGIC G QM
Sbjct: 8 ADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQM 54
>gnl|CDD|182822 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 30.5 bits (70), Expect = 1.2
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 201 ALGV---HPDILLIRADRDIPE 219
A GV HPDI +R DI
Sbjct: 325 ATGVIRRHPDIKWLRRPEDIAA 346
>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
Length = 538
Score = 29.7 bits (67), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 361 SEGKIAAIKFARENKIPFLGICFGMQM 387
+ G A++ +N PFLGIC G+Q+
Sbjct: 65 NRGMAEALREYIQNDRPFLGICLGLQL 91
>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional.
Length = 237
Score = 29.5 bits (67), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 361 SEGKIAAIKFARENKIPFLGICFGMQM 387
SE ++ A +P LGIC+G Q+
Sbjct: 74 SERTADWLRQAAAAGMPLLGICYGHQL 100
>gnl|CDD|162548 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
clade. This model represents the fungal clade of a
para-aminobenzoate synthesis enzyme,
aminodeoxychorismate synthase, which acts on chorismate
in a pathway that yields PABA, a precursor of folate.
Length = 742
Score = 29.5 bits (66), Expect = 2.6
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 498 LPEVVEYINHPWFIGVQYHPE 518
+ + PWF GVQYHPE
Sbjct: 166 ILMSAQTKKKPWF-GVQYHPE 185
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 28.9 bits (64), Expect = 3.7
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 284 RTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQL 327
+T+ +E +++V + +KD + S +E ++ SG+ NY + L
Sbjct: 292 QTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHL 335
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 28.9 bits (64), Expect = 3.9
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 284 RTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQL 327
+T+ +E +++V + +KD + S +E ++ SG+ NY + L
Sbjct: 209 QTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHL 252
>gnl|CDD|173603 PTZ00413, PTZ00413, lipoate synthase; Provisional.
Length = 398
Score = 28.6 bits (64), Expect = 4.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 228 FCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVL 262
FC+V S P LD ++ KV + G+D +V+
Sbjct: 165 FCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVM 199
>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
Length = 184
Score = 28.7 bits (65), Expect = 4.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 367 AIKFARENKIPFLGICFGMQ 386
++ +E +P LGIC G Q
Sbjct: 59 CPEYLKELDVPILGICLGHQ 78
>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD. The
functional assignment to the proteins of this family is
contentious. Reference challenges the findings of
reference, both in interpretation and in enzyme assay
results. This protein belongs to the nudix family and
shares some sequence identity with E. coli MutT but
appears not to be functionally interchangeable with it.
Length = 156
Score = 28.5 bits (64), Expect = 4.8
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 442 LGAYDVSLKEETLISRIYGLDLIP-ERHRHRYEVN--VRYREKLEGCGL--KFSGFSVDH 496
+G Y+V + + +Y ++ E E V +E + +FS D
Sbjct: 82 IGQYEVEGESTDFVKDVYFAEVSALESKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDD 141
Query: 497 ALPEVVEYINH 507
L + +E H
Sbjct: 142 VLLKCLERAKH 152
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 28.6 bits (64), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 358 KRGSEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFS--EAGVPVI 415
+RG + +A I +N IP + FG AV EA R + NA E E G+ ++
Sbjct: 201 RRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAI----NAAHVEAESVENGIGLV 256
Query: 416 ALM 418
LM
Sbjct: 257 KLM 259
>gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 28.1 bits (64), Expect = 5.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 366 AAIKFARENKIPFLGICFGMQM 387
AI+ P LGIC G QM
Sbjct: 316 EAIRAHARRGGPVLGICGGYQM 337
>gnl|CDD|179249 PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 724
Score = 28.1 bits (64), Expect = 6.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 384 GMQMAVIEAARNLA 397
G ++AV EAARNLA
Sbjct: 460 GAKLAVAEAARNLA 473
>gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 28.0 bits (63), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 366 AAIKFARENKIPFLGICFGMQMAVIEAA 393
A I A +P G+C G+Q A++EA
Sbjct: 589 ATIDAALARNLPIFGVCLGLQ-AIVEAF 615
>gnl|CDD|162392 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate
synthase. A mutation study of the FolC gene of E. coli
suggests that both activitities belong to the same
active site. Because some examples are monofunctional
(and these cannot be separated phylogenetically), the
model is treated as subfamily, not equivalog.
Length = 397
Score = 28.0 bits (63), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 11 VVSSLGKGVAAASLGALLQAHKYKV 35
V + GKG A L ++L+A YKV
Sbjct: 23 VAGTNGKGSTCAFLESILRAAGYKV 47
>gnl|CDD|180600 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 398
Score = 27.6 bits (62), Expect = 8.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 5 IFITG-GVVSSLGKGVAAASLGALLQAHKYKVRV--RKLDPY 43
+ ITG G+VSSLG+G+ A L A + + V PY
Sbjct: 8 VVITGIGLVSSLGEGLDAHW--NALSAGRPQPNVDTETFAPY 47
>gnl|CDD|179776 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 27.4 bits (62), Expect = 9.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 100 DRERRGDYLGTTVQ----------VIPHVTNEIKEFITQGNEDADFVICEI 140
D+ GD LGT VQ V P V+ +KE +++G+ D I +
Sbjct: 128 DKVEAGDILGT-VQETPSIEHKIMVPPGVSGTVKEIVSEGDYTVDDTIAVL 177
>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 201
Score = 27.5 bits (61), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 373 ENKIPFLGICFGMQM 387
K P LGIC GMQ+
Sbjct: 71 VQKKPILGICLGMQL 85
>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model
describes a distinct clade of the Cys/Met metabolism
pyridoxal phosphate-dependent enzyme superfamily.
Members include examples of OAH/OAS sulfhydrylase, an
enzyme with activity both as O-acetylhomoserine (OAH)
sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
sulphydrylase (EC 2.5.1.47). An alternate name for OAH
sulfhydrylase is homocysteine synthase. This model is
designated subfamily because it may or may not have both
activities.
Length = 418
Score = 27.3 bits (61), Expect = 9.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 238 PALDVDDIYKVPLSYHREGIDSVVLNAFG 266
PA++V DI + H G+ +V N F
Sbjct: 154 PAINVPDIEAIAEVAHAHGVPLIVDNTFA 182
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.139 0.412
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,315,293
Number of extensions: 638528
Number of successful extensions: 1388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 61
Length of query: 544
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 446
Effective length of database: 3,876,889
Effective search space: 1729092494
Effective search space used: 1729092494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)