BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus
Liberibacter asiaticus str. psy62]
(544 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 544
Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/544 (100%), Positives = 544/544 (100%)
Query: 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVF 60
MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVF
Sbjct: 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVF 60
Query: 61 VTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTN 120
VTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTN
Sbjct: 61 VTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTN 120
Query: 121 EIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180
EIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY
Sbjct: 121 EIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180
Query: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240
IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL
Sbjct: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240
Query: 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY 300
DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY
Sbjct: 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY 300
Query: 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG 360
IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG
Sbjct: 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG 360
Query: 361 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSE 420
SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSE
Sbjct: 361 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSE 420
Query: 421 WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYRE 480
WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYRE
Sbjct: 421 WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYRE 480
Query: 481 KLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY 540
KLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY
Sbjct: 481 KLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY 540
Query: 541 SQSL 544
SQSL
Sbjct: 541 SQSL 544
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 33.9 bits (76), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 373 ENKIPFLGICFGMQMAVIEAARNLAG-IPNACSTEFSEAGVPVIA----LMSEWMKGDQQ 427
E+ IP LGIC+G Q+ ++L G N+ S EF A + + L W KG +Q
Sbjct: 77 ESNIPLLGICYGQQI----MCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQ 132
Query: 428 EKRLPSDD 435
+ + D
Sbjct: 133 QVWMSHGD 140
>gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 396
Score = 29.6 bits (65), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 505 INHPWFIGVQYHPELKSRPLDPHPLFVSFI 534
I+ P F VQYHPE P D + LF +FI
Sbjct: 358 IDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386
>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 628
Score = 28.5 bits (62), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 49 GTMSPVQHGEVFVTDDGGEADL-DFGHYER 77
GT+S V G VF+T G EA D GH+ R
Sbjct: 219 GTISLVVLGSVFLTITGAEALYADLGHFGR 248
>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Length = 673
Score = 27.7 bits (60), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 191 PTQHSVKELQALGVHPDILLIRADRDIPEMERRKISL 227
PT V+ L AL PD+L++R I +E +++L
Sbjct: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL 517
>gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus
str. psy62]
Length = 294
Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 93 RIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE 131
++Y VI +G G Q+I + IKEFI +G E
Sbjct: 77 KVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKE 115
>gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 26.2 bits (56), Expect = 1.6, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 26/39 (66%)
Query: 279 QTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHS 317
++F ++ L++ N+++ KY+HLK+A + +++ + +
Sbjct: 56 KSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQN 94
>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 449
Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 454 LISRIYGLDLIPERHR-HRYEVNVRYREKLEGCGLKFSGFS 493
+I + +G+DL+ + Y V + R+++ GC LK G S
Sbjct: 205 IILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDS 245
>gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus
Liberibacter asiaticus str. psy62]
Length = 219
Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 350 ILVPGGF--GKRGSEGKIAA-------IKFARENKIPFLGICFGMQMAV 389
I++PGGF G G IAA IK + I +GIC G Q+ V
Sbjct: 45 IVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93
>gi|254780944|ref|YP_003065357.1| hypothetical protein CLIBASIA_04215 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 228
Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 401 NACSTEFSEAGVPVIALMSEWMKGDQQEK 429
NAC E+ AG + ++ +KG+ +EK
Sbjct: 129 NACLVEYPSAGFWSLCFLTTEVKGEIKEK 157
>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 449
Score = 24.6 bits (52), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 445 YDVSLKEETLISRIYGLDLIPERHRHRY-EVNVRYREKLEGCGLK 488
+ V E L+ Y DL PE +H Y ++ V Y GLK
Sbjct: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
>gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 141
Score = 24.6 bits (52), Expect = 4.3, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 118 VTNEIKEFITQGNEDADFVICEIGGT--------IGDIEVMPFVEAIRQFGNEFSH 165
V NE K+FI +GN V IGG + DI +MP V + G +FS+
Sbjct: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDI-MMPLVGCVMGNGTDFSN 61
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 24.6 bits (52), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 270 VSLPQIDNWQTFCDRTLSLKNEV 292
VS I++ +FCDRT+ LK V
Sbjct: 202 VSTHNINSIPSFCDRTIFLKKTV 224
>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 18/60 (30%)
Query: 193 QHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSY 252
+H V ++Q + + D +L+ +DRD+ V +L V+D+YK SY
Sbjct: 99 KHGVSDIQEVTIGHDGILLVSDRDM------------------VSVSLTVEDLYKALASY 140
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,246
Number of Sequences: 1233
Number of extensions: 15687
Number of successful extensions: 41
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 15
length of query: 544
length of database: 328,796
effective HSP length: 78
effective length of query: 466
effective length of database: 232,622
effective search space: 108401852
effective search space used: 108401852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)