BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62] (544 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 544 Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/544 (100%), Positives = 544/544 (100%) Query: 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVF 60 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVF Sbjct: 1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVF 60 Query: 61 VTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTN 120 VTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTN Sbjct: 61 VTDDGGEADLDFGHYERFMGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTN 120 Query: 121 EIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180 EIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY Sbjct: 121 EIKEFITQGNEDADFVICEIGGTIGDIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMPY 180 Query: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL Sbjct: 181 IRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL 240 Query: 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY 300 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY Sbjct: 241 DVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVGKY 300 Query: 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG 360 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG Sbjct: 301 IHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG 360 Query: 361 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSE 420 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSE Sbjct: 361 SEGKIAAIKFARENKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSE 420 Query: 421 WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYRE 480 WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYRE Sbjct: 421 WMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYRE 480 Query: 481 KLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY 540 KLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY Sbjct: 481 KLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLY 540 Query: 541 SQSL 544 SQSL Sbjct: 541 SQSL 544 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 33.9 bits (76), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Query: 373 ENKIPFLGICFGMQMAVIEAARNLAG-IPNACSTEFSEAGVPVIA----LMSEWMKGDQQ 427 E+ IP LGIC+G Q+ ++L G N+ S EF A + + L W KG +Q Sbjct: 77 ESNIPLLGICYGQQI----MCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQ 132 Query: 428 EKRLPSDD 435 + + D Sbjct: 133 QVWMSHGD 140 >gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 29.6 bits (65), Expect = 0.13, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 505 INHPWFIGVQYHPELKSRPLDPHPLFVSFI 534 I+ P F VQYHPE P D + LF +FI Sbjct: 358 IDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386 >gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 628 Score = 28.5 bits (62), Expect = 0.33, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 49 GTMSPVQHGEVFVTDDGGEADL-DFGHYER 77 GT+S V G VF+T G EA D GH+ R Sbjct: 219 GTISLVVLGSVFLTITGAEALYADLGHFGR 248 >gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 27.7 bits (60), Expect = 0.55, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 191 PTQHSVKELQALGVHPDILLIRADRDIPEMERRKISL 227 PT V+ L AL PD+L++R I +E +++L Sbjct: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL 517 >gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 93 RIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE 131 ++Y VI +G G Q+I + IKEFI +G E Sbjct: 77 KVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKE 115 >gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62] Length = 97 Score = 26.2 bits (56), Expect = 1.6, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 26/39 (66%) Query: 279 QTFCDRTLSLKNEVKVAIVGKYIHLKDAYRSLIEALRHS 317 ++F ++ L++ N+++ KY+HLK+A + +++ + + Sbjct: 56 KSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQN 94 >gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 454 LISRIYGLDLIPERHR-HRYEVNVRYREKLEGCGLKFSGFS 493 +I + +G+DL+ + Y V + R+++ GC LK G S Sbjct: 205 IILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDS 245 >gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus Liberibacter asiaticus str. psy62] Length = 219 Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%) Query: 350 ILVPGGF--GKRGSEGKIAA-------IKFARENKIPFLGICFGMQMAV 389 I++PGGF G G IAA IK + I +GIC G Q+ V Sbjct: 45 IVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILV 93 >gi|254780944|ref|YP_003065357.1| hypothetical protein CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62] Length = 228 Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 401 NACSTEFSEAGVPVIALMSEWMKGDQQEK 429 NAC E+ AG + ++ +KG+ +EK Sbjct: 129 NACLVEYPSAGFWSLCFLTTEVKGEIKEK 157 >gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 Score = 24.6 bits (52), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 445 YDVSLKEETLISRIYGLDLIPERHRHRY-EVNVRYREKLEGCGLK 488 + V E L+ Y DL PE +H Y ++ V Y GLK Sbjct: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191 >gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus Liberibacter asiaticus str. psy62] Length = 141 Score = 24.6 bits (52), Expect = 4.3, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Query: 118 VTNEIKEFITQGNEDADFVICEIGGT--------IGDIEVMPFVEAIRQFGNEFSH 165 V NE K+FI +GN V IGG + DI +MP V + G +FS+ Sbjct: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDI-MMPLVGCVMGNGTDFSN 61 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 24.6 bits (52), Expect = 4.3, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 270 VSLPQIDNWQTFCDRTLSLKNEV 292 VS I++ +FCDRT+ LK V Sbjct: 202 VSTHNINSIPSFCDRTIFLKKTV 224 >gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 18/60 (30%) Query: 193 QHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSY 252 +H V ++Q + + D +L+ +DRD+ V +L V+D+YK SY Sbjct: 99 KHGVSDIQEVTIGHDGILLVSDRDM------------------VSVSLTVEDLYKALASY 140 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.139 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 360,246 Number of Sequences: 1233 Number of extensions: 15687 Number of successful extensions: 41 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 15 length of query: 544 length of database: 328,796 effective HSP length: 78 effective length of query: 466 effective length of database: 232,622 effective search space: 108401852 effective search space used: 108401852 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)