Query gi|254780196|ref|YP_003064609.1| hypothetical protein CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs 126 out of 939
Neff 5.3
Searched_HMMs 33803
Date Mon May 23 12:11:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780196.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3dl8_E Protein-export membran 99.9 1.7E-27 5.1E-32 152.4 1.5 77 1-77 1-82 (107)
2 >2akh_X Protein-export membran 99.9 3.1E-23 9.1E-28 131.6 8.1 71 1-71 1-77 (77)
3 >3din_E Preprotein translocase 99.9 2.5E-23 7.4E-28 132.1 1.7 70 1-70 1-76 (76)
4 >2knc_B Integrin beta-3; trans 47.8 15 0.00045 15.5 3.1 19 4-22 11-29 (79)
5 >2k9j_B Integrin beta-3; trans 26.8 36 0.0011 13.7 3.3 19 4-22 10-28 (43)
6 >3bz1_I Photosystem II reactio 24.7 39 0.0012 13.5 4.3 28 47-74 4-31 (38)
7 >1fjk_A Cardiac phospholamban; 23.2 42 0.0013 13.3 3.3 18 5-22 33-50 (52)
8 >2k21_A Potassium voltage-gate 16.6 61 0.0018 12.6 1.6 33 45-77 53-85 (90)
9 >1m56_D Cytochrome C oxidase; 16.2 62 0.0018 12.5 4.2 25 44-68 26-50 (51)
10 >1z65_A PRPLP, prion-like prot 13.7 66 0.002 12.4 0.9 14 50-63 7-20 (30)
No 1
>>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (E:)
Probab=99.93 E-value=1.7e-27 Score=152.45 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 935998999999999999997147764422-----222333346656668999999999999999999999726677765
Q gi|254780196|r 1 MQIFLMVVHLIVVVGLVCVILIQSSDSSAF-----GSSSNFTSVRSTAHSLGRFTAILAFFFFATSIALGMISRYTSTRY 75 (125)
Q Consensus 1 M~~~llvi~vi~~~~Li~~VLlQ~~kg~g~-----G~~~~~~~~~g~~~~L~k~T~~la~~F~~~sl~l~~~s~~~~~~~ 75 (125)
||++++++|+++|++||++||+|++|++|+ |+++++|+.||++|||+|+||++|++||++|+.|+|++++++++.
T Consensus 1 M~t~l~vi~ii~~v~LI~~VLlQ~~K~~gl~~~~gg~~~~~fg~r~~~~~L~k~T~~la~~F~v~sl~l~~~~~~~~~~~ 80 (107)
T 3dl8_E 1 MYYALLTLFVIIAVVLIISTLLQKGRGDVGAAFGGGMGQSIFGVGGVETILTKATYWLGALFLVLALLLSVIPKEKGSVV 80 (107)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCCCCCSSCCCCCTTHHHHHHHHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 95389999999999999981402688660225456665666676533248999999999999999999999965887632
Q ss_pred CC
Q ss_conf 31
Q gi|254780196|r 76 KD 77 (125)
Q Consensus 76 ~~ 77 (125)
..
T Consensus 81 ~~ 82 (107)
T 3dl8_E 81 EK 82 (107)
T ss_dssp --
T ss_pred CC
T ss_conf 33
No 2
>>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X (X:)
Probab=99.89 E-value=3.1e-23 Score=131.62 Aligned_cols=71 Identities=35% Similarity=0.556 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9359989999999999999971477644222------2233334665666899999999999999999999972667
Q gi|254780196|r 1 MQIFLMVVHLIVVVGLVCVILIQSSDSSAFG------SSSNFTSVRSTAHSLGRFTAILAFFFFATSIALGMISRYT 71 (125)
Q Consensus 1 M~~~llvi~vi~~~~Li~~VLlQ~~kg~g~G------~~~~~~~~~g~~~~L~k~T~~la~~F~~~sl~l~~~s~~~ 71 (125)
|+++++++|+++|++||.+||+|++|++|+| +++++|++|+.+++|+|+||++|++||++|+.|+|+++++
T Consensus 1 M~t~l~vi~ii~si~LI~~VLlQ~~K~~gl~~~~ggg~~~~~~g~r~~~~~L~k~T~vla~~F~v~sl~l~~~~~~~ 77 (77)
T 2akh_X 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFFIISLVLGNINSNK 77 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 93079999999999999985023589885302346764466747653302999999999999999999999986069
No 3
>>3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga SP} (E:)
Probab=99.86 E-value=2.5e-23 Score=132.05 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 935998999999999999997147764422------2223333466566689999999999999999999997266
Q gi|254780196|r 1 MQIFLMVVHLIVVVGLVCVILIQSSDSSAF------GSSSNFTSVRSTAHSLGRFTAILAFFFFATSIALGMISRY 70 (125)
Q Consensus 1 M~~~llvi~vi~~~~Li~~VLlQ~~kg~g~------G~~~~~~~~~g~~~~L~k~T~~la~~F~~~sl~l~~~s~~ 70 (125)
||++++++|+++|++||++||+|++|++|+ |+++++|+.|++++||+|+|||+|++||++|+.|++++++
T Consensus 1 M~~~l~vi~ii~~i~LI~~VLlQ~~K~~gl~~~~ggg~~~~~fg~~~~~~~L~k~T~~la~~F~v~sl~L~~~~~k 76 (76)
T 3din_E 1 MKTFFLIVHTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLDTGGKITLVLSVLFFVSCVVTAFVLTR 76 (76)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTCCSSCCTTCCCCCCSSCSSCTTHHHHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9207999999999999999730258776542455677546675776502089999999999999999999998619
No 4
>>2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (B:)
Probab=47.82 E-value=15 Score=15.49 Aligned_cols=19 Identities=5% Similarity=0.287 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999971
Q gi|254780196|r 4 FLMVVHLIVVVGLVCVILI 22 (125)
Q Consensus 4 ~llvi~vi~~~~Li~~VLl 22 (125)
..+++-++.+++||+++||
T Consensus 11 ~~ivlgvi~~ivliGl~lL 29 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAAL 29 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7699999999999999999
No 5
>>2k9j_B Integrin beta-3; transmembrane complex, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues, disease mutation; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A (B:)
Probab=26.84 E-value=36 Score=13.69 Aligned_cols=19 Identities=5% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999971
Q gi|254780196|r 4 FLMVVHLIVVVGLVCVILI 22 (125)
Q Consensus 4 ~llvi~vi~~~~Li~~VLl 22 (125)
..+++-++.++.||++.++
T Consensus 10 ~~Ivlgvi~~IvliGl~lL 28 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAAL 28 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 6
>>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3a0b_I* 3a0h_I* (I:)
Probab=24.71 E-value=39 Score=13.49 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999999972667776
Q gi|254780196|r 47 GRFTAILAFFFFATSIALGMISRYTSTR 74 (125)
Q Consensus 47 ~k~T~~la~~F~~~sl~l~~~s~~~~~~ 74 (125)
-|+.....++||+.-+..+++++..+..
T Consensus 4 LKi~Vy~vV~fFvslFiFGFLSnDP~Rn 31 (38)
T 3bz1_I 4 LKITVYIVVTFFVLLFVFGFLSGDPARN 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTSS
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7874266899999999886305898899
No 7
>>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} (A:)
Probab=23.23 E-value=42 Score=13.33 Aligned_cols=18 Identities=17% Similarity=0.648 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999971
Q gi|254780196|r 5 LMVVHLIVVVGLVCVILI 22 (125)
Q Consensus 5 llvi~vi~~~~Li~~VLl 22 (125)
+-.-.+++|++||+.|.+
T Consensus 33 vnfclili~llliciivm 50 (52)
T 1fjk_A 33 INFCLILIFLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 8
>>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens} (A:1-90)
Probab=16.62 E-value=61 Score=12.57 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 899999999999999999999972667776531
Q gi|254780196|r 45 SLGRFTAILAFFFFATSIALGMISRYTSTRYKD 77 (125)
Q Consensus 45 ~L~k~T~~la~~F~~~sl~l~~~s~~~~~~~~~ 77 (125)
.|.=+-..--..||+..|.|+|+-+++-....|
T Consensus 53 ylYIL~Vm~ffgff~~gImLsYiRSKk~e~~~D 85 (90)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSND 85 (90)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 579999999999999999998778865036799
No 9
>>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:)
Probab=16.18 E-value=62 Score=12.51 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899999999999999999999972
Q gi|254780196|r 44 HSLGRFTAILAFFFFATSIALGMIS 68 (125)
Q Consensus 44 ~~L~k~T~~la~~F~~~sl~l~~~s 68 (125)
+..-|+|.|.+++-++.-+.|++++
T Consensus 26 ~GFik~~t~~~i~ii~~liFlAif~ 50 (51)
T 1m56_D 26 AGFVRMVTWAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999999999999999999999962
No 10
>>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic} (A:)
Probab=13.75 E-value=66 Score=12.37 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780196|r 50 TAILAFFFFATSIA 63 (125)
Q Consensus 50 T~~la~~F~~~sl~ 63 (125)
||+++++-+...--
T Consensus 7 tw~~~ilcmllash 20 (30)
T 1z65_A 7 TWWVAILCMLLASH 20 (30)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 08999999999999
Done!