RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780196|ref|YP_003064609.1| hypothetical protein
CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>gnl|CDD|180737 PRK06870, secG, preprotein translocase subunit SecG; Reviewed.
          Length = 76

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQS------SDSSAFGSSSNFTSVRSTAHSLGRFTAILA 54
          M   L+V+ LIV + L+ ++L+QS        S   G+SS     R   + L R TA+LA
Sbjct: 1  MYTLLLVLLLIVALLLIILVLLQSGKGAGLGGSFGGGASSTLFGARGAENFLSRLTAVLA 60

Query: 55 FFFFATSIALGMISRY 70
            FF  S+ALG +S  
Sbjct: 61 VLFFVLSLALGYLSSK 76


>gnl|CDD|162050 TIGR00810, secG, protein translocase, SecG subunit.  This family
          of proteins forms a complex with SecY and SecE. SecA
          then recruits the SecYEG complex to form an active
          protein translocation channel.
          Length = 73

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 2  QIFLMVVHLIVVVGLVCVILIQSSDSSAF------GSSSNFTSVRSTAHSLGRFTAILAF 55
             L+++H+IV + L+ ++L+QS            G+S +    R   + L R TA+LA 
Sbjct: 1  YTVLLILHIIVAILLIGLVLLQSGKGGGLGGAFGGGASQSLFGSRGAENFLSRLTAVLAV 60

Query: 56 FFFATSIALGMIS 68
           FF  S+AL  +S
Sbjct: 61 LFFVLSLALAYLS 73


>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated.
          Length = 213

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 24 SSDSSAFGSSSNFTSVRSTAHSLGRFTAILAFFFFATSIALGMIS 68
          + D + FG++  F ++  T    G   AIL  F F T+    M++
Sbjct: 32 AEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKTAPEWAMLA 76


>gnl|CDD|161694 TIGR00077, lspA, lipoprotein signal peptidase.  Alternate name:
          lipoprotein signal peptidase.
          Length = 166

 Score = 26.2 bits (58), Expect = 2.3
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQ-----SSDSSAFGSSSNFTSVRST--AHSLGRFTAIL 53
          +  +L+ +  I    L   +++Q      +   AF    N T VR+T  A SL       
Sbjct: 10 LLYWLVAILFIGFDQLSKYLVLQNFDLGETYFVAFSGVFNITYVRNTGAAFSLLADQGGQ 69

Query: 54 AFFFFATSIALGMISRYTSTRYK 76
           +F    +IA+ +       RYK
Sbjct: 70 VYFLKGLAIAISLGLFVFLLRYK 92


>gnl|CDD|148040 pfam06197, DUF998, Protein of unknown function (DUF998).  Family of
           conserved archaeal proteins.
          Length = 146

 Score = 26.1 bits (58), Expect = 2.9
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 1   MQIFLMVVHLIVVVGLVCVILIQSSDSSAFGSSSN--------FTSVRSTAHSLGRFTAI 52
               L++  L+V++  + ++       +A    +         F       H    F A+
Sbjct: 25  FNTGLILTGLLVLLYALLLLRKIERVGAALLILAGVFLALVGIFPEGTGYPH---LFVAL 81

Query: 53  LAFFFFATSIALGMISRYTSTRYK 76
           L F     ++ +  I    S R+K
Sbjct: 82  LFFLLGFIAVLILGIGLLLSGRFK 105


>gnl|CDD|131679 TIGR02631, xylA_Arthro, xylose isomerase, Arthrobacter type.  This
           model describes a D-xylose isomerase that is also active
           as a D-glucose isomerase. It is tetrameric and dependent
           on a divalent cation Mg2+, Co2+ or Mn2+ as characterized
           in Arthrobacter. Members of this family differ
           substantially from the D-xylose isomerases of family
           TIGR02630.
          Length = 382

 Score = 25.2 bits (55), Expect = 4.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
            G D FGD +   LD V A
Sbjct: 19  VGRDPFGDATRTALDPVEA 37


>gnl|CDD|184940 PRK14977, PRK14977, bifunctional DNA-directed RNA polymerase A'/A''
           subunit; Provisional.
          Length = 1321

 Score = 25.0 bits (54), Expect = 5.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 53  LAFFFFATSIALGMISRYTSTRYKDNMHRSLVDSIKD 89
             FFF A     G+I +   T       R L ++++D
Sbjct: 830 AEFFFHAMGGREGLIDKARRTEDSGYFQRRLANALED 866


>gnl|CDD|178545 PLN02960, PLN02960, alpha-amylase.
          Length = 897

 Score = 24.8 bits (54), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 27  SSAFGSSSNFTSVRSTAHSLG 47
           SS FG+  +F  +   AH LG
Sbjct: 459 SSRFGTPDDFKRLVDEAHGLG 479


>gnl|CDD|183674 PRK12677, PRK12677, xylose isomerase; Provisional.
          Length = 384

 Score = 24.5 bits (54), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
           QG D FGD + P LD V A
Sbjct: 18  QGRDPFGDATRPPLDPVEA 36


>gnl|CDD|152663 pfam12228, DUF3604, Protein of unknown function (DUF3604).  This
           family of proteins is found in bacteria. Proteins in
           this family are typically between 621 and 693 amino
           acids in length.
          Length = 592

 Score = 24.5 bits (54), Expect = 7.3
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 13/35 (37%)

Query: 47  GRFTAILAFFFFATSIALGMISRYTSTRYKDNMHR 81
           G+FT  + +              +TS    +N+HR
Sbjct: 150 GKFTTFIGY-------------EWTSAPGGNNLHR 171


>gnl|CDD|183804 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
          Length = 290

 Score = 24.5 bits (54), Expect = 7.4
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 39  VRSTAHSLGRFTAI-LAFFFFATSIALGM 66
           V S+A   GR+    +  FF  T   L +
Sbjct: 199 VNSSAIFFGRYAPEAIGLFFALTVGFLAI 227


>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
          Length = 565

 Score = 24.5 bits (53), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 57  FFATSIALGMISRYTSTRYKDNMHRSLVDSIK 88
           FF T I  G+I R +    K+ +  S  D+I+
Sbjct: 385 FFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIE 416


>gnl|CDD|181942 PRK09547, nhaB, sodium/proton antiporter; Reviewed.
          Length = 513

 Score = 24.1 bits (53), Expect = 9.4
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 21/58 (36%)

Query: 9   HLIVV--VGLVCVILIQSSDSSAFGSSSNFTSVRSTAHSLGR-------FTAILAFFF 57
           HL  V  +GL  +IL  +           FT V +  H++G+       FTA+L  FF
Sbjct: 319 HLAEVGLIGLSVIILATA-----------FTGV-TDEHAIGKAFEEALPFTALLTVFF 364


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,760,127
Number of extensions: 93522
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 34
Length of query: 125
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,222,617
Effective search space: 181572531
Effective search space used: 181572531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)