RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780196|ref|YP_003064609.1| hypothetical protein
CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>3din_E Preprotein translocase subunit SECG; protein
          translocation, membrane protein, ATPase, ATP- binding,
          cytoplasm, inner membrane, nucleotide-binding; HET:
          ADP; 4.50A {Thermotoga SP} (E:)
          Length = 76

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQSSDSSAF------GSSSNFTSVRSTAHSLGRFTAILA 54
          M+ F ++VH I+ V L+ ++ +Q S  S        G        R    + G+ T +L+
Sbjct: 1  MKTFFLIVHTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLDTGGKITLVLS 60

Query: 55 FFFFATSIALGMIS 68
            FF + +    + 
Sbjct: 61 VLFFVSCVVTAFVL 74


>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase
          membrane protein translocation protein- protein
          complex, ATP-binding, cell membrane; 7.50A {Aquifex
          aeolicus} (E:)
          Length = 107

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQSSD----SSAFGSSSN-FTSVRSTAHSLGRFTAILAF 55
          M   L+ + +I+ V L+   L+Q       ++  G        V      L + T  L  
Sbjct: 1  MYYALLTLFVIIAVVLIISTLLQKGRGDVGAAFGGGMGQSIFGVGGVETILTKATYWLGA 60

Query: 56 FFFATSIALGMISRYTST 73
           F   ++ L +I +   +
Sbjct: 61 LFLVLALLLSVIPKEKGS 78


>2akh_X Protein-export membrane protein SECG; protein transport,
          translocation, transmembrane, transport; 14.90A
          {Escherichia coli} PDB: 2aki_X (X:)
          Length = 77

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQSS------DSSAFGSSSNFTSVRSTAHSLGRFTAILA 54
          M   L+VV LIV +GLV +I++Q         S   G+S+       + + + R TA+LA
Sbjct: 1  MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60

Query: 55 FFFFATSIALGMIS 68
            FF  S+ LG I+
Sbjct: 61 TLFFIISLVLGNIN 74


>2knc_B Integrin beta-3; transmembrane signaling, coiled coil,
          protein structure, alternative splicing, calcium, cell
          adhesion; NMR {Homo sapiens} (B:)
          Length = 79

 Score = 24.3 bits (53), Expect = 5.1
 Identities = 5/22 (22%), Positives = 14/22 (63%)

Query: 1  MQIFLMVVHLIVVVGLVCVILI 22
          + + L V+  I+++GL  +++ 
Sbjct: 11 LVVLLSVMGAILLIGLAALLIW 32


>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family);
           membrane protein, transport protein; HET: BOG; 1.65A
           {Aquifex aeolicus VF5} (A:)
          Length = 519

 Score = 24.5 bits (52), Expect = 5.2
 Identities = 17/77 (22%), Positives = 29/77 (37%)

Query: 2   QIFLMVVHLIVVVGLVCVILIQSSDSSAFGSSSNFTSVRSTAHSLGRFTAILAFFFFATS 61
                +  L V + +   +L   + ++A G +  +T         G + A +   FF  S
Sbjct: 197 IAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLS 256

Query: 62  IALGMISRYTSTRYKDN 78
           +  G I  Y S   KD 
Sbjct: 257 LGFGAIITYASYVRKDQ 273


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 746,784
Number of extensions: 24579
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 8
Length of query: 125
Length of database: 4,956,049
Length adjustment: 75
Effective length of query: 50
Effective length of database: 2,420,674
Effective search space: 121033700
Effective search space used: 121033700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)