RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780196|ref|YP_003064609.1| hypothetical protein CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62] (125 letters) >3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga SP} (E:) Length = 76 Score = 66.1 bits (162), Expect = 2e-12 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Query: 1 MQIFLMVVHLIVVVGLVCVILIQSSDSSAF------GSSSNFTSVRSTAHSLGRFTAILA 54 M+ F ++VH I+ V L+ ++ +Q S S G R + G+ T +L+ Sbjct: 1 MKTFFLIVHTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLDTGGKITLVLS 60 Query: 55 FFFFATSIALGMIS 68 FF + + + Sbjct: 61 VLFFVSCVVTAFVL 74 >3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (E:) Length = 107 Score = 66.0 bits (161), Expect = 2e-12 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 1 MQIFLMVVHLIVVVGLVCVILIQSSD----SSAFGSSSN-FTSVRSTAHSLGRFTAILAF 55 M L+ + +I+ V L+ L+Q ++ G V L + T L Sbjct: 1 MYYALLTLFVIIAVVLIISTLLQKGRGDVGAAFGGGMGQSIFGVGGVETILTKATYWLGA 60 Query: 56 FFFATSIALGMISRYTST 73 F ++ L +I + + Sbjct: 61 LFLVLALLLSVIPKEKGS 78 >2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X (X:) Length = 77 Score = 64.2 bits (157), Expect = 5e-12 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 1 MQIFLMVVHLIVVVGLVCVILIQSS------DSSAFGSSSNFTSVRSTAHSLGRFTAILA 54 M L+VV LIV +GLV +I++Q S G+S+ + + + R TA+LA Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 55 FFFFATSIALGMIS 68 FF S+ LG I+ Sbjct: 61 TLFFIISLVLGNIN 74 >2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (B:) Length = 79 Score = 24.3 bits (53), Expect = 5.1 Identities = 5/22 (22%), Positives = 14/22 (63%) Query: 1 MQIFLMVVHLIVVVGLVCVILI 22 + + L V+ I+++GL +++ Sbjct: 11 LVVLLSVMGAILLIGLAALLIW 32 >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus VF5} (A:) Length = 519 Score = 24.5 bits (52), Expect = 5.2 Identities = 17/77 (22%), Positives = 29/77 (37%) Query: 2 QIFLMVVHLIVVVGLVCVILIQSSDSSAFGSSSNFTSVRSTAHSLGRFTAILAFFFFATS 61 + L V + + +L + ++A G + +T G + A + FF S Sbjct: 197 IAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLS 256 Query: 62 IALGMISRYTSTRYKDN 78 + G I Y S KD Sbjct: 257 LGFGAIITYASYVRKDQ 273 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.129 0.347 Gapped Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 746,784 Number of extensions: 24579 Number of successful extensions: 55 Number of sequences better than 10.0: 1 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 8 Length of query: 125 Length of database: 4,956,049 Length adjustment: 75 Effective length of query: 50 Effective length of database: 2,420,674 Effective search space: 121033700 Effective search space used: 121033700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.1 bits)