RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780196|ref|YP_003064609.1| hypothetical protein
CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane
          protein translocation protein- protein complex,
          ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
          Length = 107

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQSSDS---SAF--GSSSNFTSVRSTAHSLGRFTAILAF 55
          M   L+ + +I+ V L+   L+Q       +AF  G   +   V      L + T  L  
Sbjct: 1  MYYALLTLFVIIAVVLIISTLLQKGRGDVGAAFGGGMGQSIFGVGGVETILTKATYWLGA 60

Query: 56 FFFATSIALGMISRYTST 73
           F   ++ L +I +   +
Sbjct: 61 LFLVLALLLSVIPKEKGS 78


>2akh_X Protein-export membrane protein SECG; protein transport,
          translocation, transmembrane, transport; 14.90A
          {Escherichia coli} PDB: 2aki_X
          Length = 77

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQSSDSSA------FGSSSNFTSVRSTAHSLGRFTAILA 54
          M   L+VV LIV +GLV +I++Q    +        G+S+       + + + R TA+LA
Sbjct: 1  MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60

Query: 55 FFFFATSIALGMISR 69
            FF  S+ LG I+ 
Sbjct: 61 TLFFIISLVLGNINS 75


>3din_E Preprotein translocase subunit SECG; protein translocation,
          membrane protein, ATPase, ATP- binding, cytoplasm,
          inner membrane, nucleotide-binding; HET: ADP; 4.50A
          {Thermotoga SP}
          Length = 76

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 1  MQIFLMVVHLIVVVGLVCVILIQSSDSSA------FGSSSNFTSVRSTAHSLGRFTAILA 54
          M+ F ++VH I+ V L+ ++ +Q S  S        G        R    + G+ T +L+
Sbjct: 1  MKTFFLIVHTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLDTGGKITLVLS 60

Query: 55 FFFFATSIALGMIS 68
            FF + +    + 
Sbjct: 61 VLFFVSCVVTAFVL 74


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.2 bits (73), Expect = 0.033
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 48/111 (43%)

Query: 15  GLVCVILIQSSDS-SAFGSSSNFTSVRSTAHSLGRFTAILAFFF--------FA-TSIAL 64
           GLV  + I  +DS  +F  S                 AI   FF        +  TS+  
Sbjct: 276 GLVTAVAIAETDSWESFFVSVR--------------KAITVLFFIGVRCYEAYPNTSLPP 321

Query: 65  GMISRYTSTRYKDNMHRSLVDSIKDQGNDNFGDGS-SPKLDSVSAKSSSSV 114
            ++                 DS+     +N  +G  SP L S+S  +   V
Sbjct: 322 SILE----------------DSL-----EN-NEGVPSPML-SISNLTQEQV 349


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.9 bits (71), Expect = 0.040
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 6/28 (21%)

Query: 81  RSLVDSIKDQGNDNFGDGSSPKLDSVSA 108
           + L  S+K      + D S+P L ++ A
Sbjct: 23  KKLQASLK-----LYADDSAPAL-AIKA 44


>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces
           olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A*
           2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A
           1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A*
           1xih_A* 1xii_A* 1xij_A 8xia_A* ...
          Length = 386

 Score = 26.0 bits (57), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
           QG D FGD + P LD V  
Sbjct: 20  QGRDPFGDATRPALDPVET 38


>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); 2.30A
           {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A
           1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A
           1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
          Length = 394

 Score = 26.1 bits (57), Expect = 2.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
            G D FG  +   LD V A
Sbjct: 20  TGADPFGVATRKNLDPVEA 38


>1eys_L Photosynthetic reaction center; membrane protein complex, electron
           transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
           {Thermochromatium tepidum} SCOP: f.26.1.1
          Length = 280

 Score = 25.4 bits (56), Expect = 3.3
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 4   FLMVVHLIVVVGLVCVILIQS-SDSSAFGSSSNFTSVRSTAHSLGRFT-----AILAFFF 57
           F   +   +V+  V  +L+ +      +G  S+   V +  +    F       +   FF
Sbjct: 129 FSFAIGAYLVLVFVRPLLMGAWGHGFPYGILSHLDWVSNVGYQFLHFHYNPAHMLAISFF 188

Query: 58  FATSIALGMISRY 70
           F   +AL M    
Sbjct: 189 FTNCLALSMHGSL 201


>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET:
           XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3
           PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A*
           3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
          Length = 393

 Score = 25.7 bits (56), Expect = 3.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
           Q  D FGD +   LD V A
Sbjct: 20  QARDAFGDATRTALDPVEA 38


>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus}
           SCOP: c.1.15.3 PDB: 1bxc_A
          Length = 387

 Score = 25.3 bits (55), Expect = 3.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 89  DQGNDNFGDGSSPKLDSVSA 108
           + G D FGD    +LD V  
Sbjct: 19  NVGRDPFGDAVRERLDPVYV 38


>3bz1_B Photosystem II core light harvesting protein; electron transport
           photosystem, membrane complex, transmembrane
           alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG
           LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_B*
           1w5c_B* 2axt_B* 3bz2_B* 3a0b_B* 3a0h_B* 1izl_B*
          Length = 510

 Score = 25.2 bits (55), Expect = 4.9
 Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 10/41 (24%)

Query: 22  IQSSDSSAFGSSS-NFTSVRS---TAHSLGRFTAILAFFFF 58
           I   D+    S     TS R     AH      A+ A  FF
Sbjct: 429 IFEFDTETLNSDGIFRTSPRGWFTFAH------AVFALLFF 463


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 864,790
Number of extensions: 30558
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 18
Length of query: 125
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 44
Effective length of database: 3,729,466
Effective search space: 164096504
Effective search space used: 164096504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)