HHsearch alignment for GI: 254780197 and conserved domain: TIGR00419

>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=100.00  E-value=0  Score=479.49  Aligned_cols=234  Identities=28%  Similarity=0.358  Sum_probs=215.7

Q ss_pred             EEEEEEC-CCCCHHHHHHHHHHHHH-CCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             6998646-56899999999999952-223457711999689655999999732576310222012223334332120677
Q gi|254780197|r    8 LVVGNWK-MHGLRLSLERIQKIVEG-IRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANM   85 (264)
Q Consensus         8 iIigNWK-MN~~~~~~~~~~~~~~~-~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~m   85 (264)
T Consensus         1 ~V~~N~Ktynes~g~r~~~~a~i~~G~vA~~~g~~v~vAP~~~dL~~~~~~v~G~~I~V~AQh~d~~~~GahTG~i~Aem   80 (244)
T TIGR00419         1 LVIGNWKTYNESVGQRALEVAKIAEGEVASEAGVEVAVAPPFVDLPMVKDEVEGSEIPVYAQHVDAVKSGAHTGEISAEM   80 (244)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHH
T ss_conf             95657752478865389999876257656502405774275013779998507997522445410117876522368999


Q ss_pred             HHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHH-------CCC
Q ss_conf             7540731001042000221357999999999999833474799816552033349800011100222100-------000
Q gi|254780197|r   86 LADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP-------SEF  158 (264)
Q Consensus        86 L~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~-------~~~  158 (264)
T Consensus        81 ~~d~Ga~g~linHSErR~~~~laDElIe~~~~~~kelGL~~vvC~GET~~~~EaGkteev~~~~~n~V~~t~aAaADkik  160 (244)
T TIGR00419        81 LKDLGAKGTLINHSERRSLLKLADELIEKKVARLKELGLTSVVCTGETLEEREAGKTEEVAARTINNVLTTAAAAADKIK  160 (244)
T ss_pred             HHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98459972887652666688765788899999998648827997457633210574245555456447655889887744


Q ss_pred             CCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC-HHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH
Q ss_conf             013411320513530455764311245544679999996332-2416430886277898789999668989688974343
Q gi|254780197|r  159 KSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFP-EEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS  237 (264)
Q Consensus       159 ~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~-~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS  237 (264)
T Consensus       161 Dl~p~~vAvEPpelIGtGipvS~A~pe~V~~~vrD~l~~na~~evn~~V~vlcGagi~~~~d~~~A~~lg~eGvLlasg~  240 (244)
T TIGR00419       161 DLEPDVVAVEPPELIGTGIPVSKAQPEVVHGSVRDHLKKNAVKEVNESVRVLCGAGITTGEDAELAAQLGAEGVLLASGV  240 (244)
T ss_pred             CCCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCEE
T ss_conf             15897899827503227878988756777655788886304501266407887686165889999736997768872556


Q ss_pred             CCHH
Q ss_conf             5889
Q gi|254780197|r  238 LQHE  241 (264)
Q Consensus       238 l~~~  241 (264)
T Consensus       241 ~KA~  244 (244)
T TIGR00419       241 LKAE  244 (244)
T ss_pred             ECCC
T ss_conf             4379