HHsearch alignment for GI: 254780197 and conserved domain: cd00311

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00  E-value=0  Score=611.60  Aligned_cols=242  Identities=43%  Similarity=0.710  Sum_probs=232.3

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             06998646568999999999999522234577119996896559999997325763102220122233343321206777
Q gi|254780197|r    7 PLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANML   86 (264)
Q Consensus         7 ~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL   86 (264)
T Consensus         1 piiiaNWKmn~~~~~~~~~~~~~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mL   80 (242)
T cd00311           1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML   80 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             97999414489999999999999862567689769998998999999998358984698401434568887474559999


Q ss_pred             HHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEE
Q ss_conf             54073100104200022135799999999999983347479981655203334980001110022210000001341132
Q gi|254780197|r   87 ADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIA  166 (264)
Q Consensus        87 ~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIA  166 (264)
T Consensus        81 ~d~G~~~viiGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIA  160 (242)
T cd00311          81 KDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIA  160 (242)
T ss_pred             HHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCEEEE
T ss_conf             97599989975589898819987999999999998799279993660665540439999999999998471010360999


Q ss_pred             ECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHH
Q ss_conf             05135304557643112455446799999963322416430886277898789999668989688974343588999999
Q gi|254780197|r  167 YEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKI  246 (264)
Q Consensus       167 YEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~I  246 (264)
T Consensus       161 YEPvWAIGtG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LvG~ASl~~~~F~~I  240 (242)
T cd00311         161 YEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESFLDI  240 (242)
T ss_pred             ECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHH
T ss_conf             77688618999999999999999999999986202036754896077898899999568999978853576788899998


Q ss_pred             HH
Q ss_conf             99
Q gi|254780197|r  247 VE  248 (264)
Q Consensus       247 i~  248 (264)
T Consensus       241 i~  242 (242)
T cd00311         241 IK  242 (242)
T ss_pred             HC
T ss_conf             69