HHsearch alignment for GI: 254780197 and conserved domain: cd00311
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=0 Score=611.60 Aligned_cols=242 Identities=43% Similarity=0.710 Sum_probs=232.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 06998646568999999999999522234577119996896559999997325763102220122233343321206777
Q gi|254780197|r 7 PLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANML 86 (264)
Q Consensus 7 ~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL 86 (264)
T Consensus 1 piiiaNWKmn~~~~~~~~~~~~~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mL 80 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML 80 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 97999414489999999999999862567689769998998999999998358984698401434568887474559999
Q ss_pred HHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEE
Q ss_conf 54073100104200022135799999999999983347479981655203334980001110022210000001341132
Q gi|254780197|r 87 ADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIA 166 (264)
Q Consensus 87 ~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIA 166 (264)
T Consensus 81 ~d~G~~~viiGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIA 160 (242)
T cd00311 81 KDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIA 160 (242)
T ss_pred HHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCEEEE
T ss_conf 97599989975589898819987999999999998799279993660665540439999999999998471010360999
Q ss_pred ECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHH
Q ss_conf 05135304557643112455446799999963322416430886277898789999668989688974343588999999
Q gi|254780197|r 167 YEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKI 246 (264)
Q Consensus 167 YEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~I 246 (264)
T Consensus 161 YEPvWAIGtG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LvG~ASl~~~~F~~I 240 (242)
T cd00311 161 YEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESFLDI 240 (242)
T ss_pred ECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHH
T ss_conf 77688618999999999999999999999986202036754896077898899999568999978853576788899998
Q ss_pred HH
Q ss_conf 99
Q gi|254780197|r 247 VE 248 (264)
Q Consensus 247 i~ 248 (264)
T Consensus 241 i~ 242 (242)
T cd00311 241 IK 242 (242)
T ss_pred HC
T ss_conf 69