HHsearch alignment for GI: 254780197 and conserved domain: cd04732
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.84 E-value=0.61 Score=26.65 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=68.2
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHCCCC----CCCCCCCHHHHHHC
Q ss_conf 0677754073100104200022135799999999999983347-479981655203334980----00111002221000
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL-YPIVCIGETDEEYRSGRT----FEVLQKQLDCSLPS 156 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l-~pIlCiGE~~~e~~~~~~----~~~l~~Ql~~~l~~ 156 (264)
T Consensus 87 ~~~~l~~~Ga~kvvi~s~~-----~~~~~~~~~~~~---~~G~q~iv~slD----~k~~~~~~~~~~~~~~~~~~~~i~~ 154 (234)
T cd04732 87 DIERLLDLGVSRVIIGTAA-----VKNPELVKELLK---EYGGERIVVGLD----AKDGKVATKGWLETSEVSLEELAKR 154 (234)
T ss_pred HHHHHHHCCCCEEEECCCH-----HHCHHHHHHHHH---HCCCCCEEEEEE----EECCCHHCCCCCEEECCCHHHHHHH
T ss_conf 9999986488718971401-----108278999999---829764699999----7512000168640013516999999
Q ss_pred CCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEE
Q ss_conf 000--13411320513530455764311245544679999996332241643088627789-878999966898968897
Q gi|254780197|r 157 EFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLV 233 (264)
Q Consensus 157 ~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LV 233 (264)
T Consensus 155 ~~~~g~geii--lt~i~~dGt~~G~d~~ll~~i~----~~---------~~~p~i~~GGv~s~~di~~l~~~-g~~gviv 218 (234)
T cd04732 155 FEELGVKAII--YTDISRDGTLSGPNFELYKELA----AA---------TGIPVIASGGVSSLDDIKALKEL-GVAGVIV 218 (234)
T ss_pred HHHCCCCEEE--EEEECCCCCCCCCCHHHHHHHH----HH---------CCCCEEEEECCCCHHHHHHHHHC-CCCEEEE
T ss_conf 9745864699--8764256653568999999998----65---------79989998189999999999977-9989999
Q ss_pred CHHHCC
Q ss_conf 434358
Q gi|254780197|r 234 GGASLQ 239 (264)
Q Consensus 234 G~ASl~ 239 (264)
T Consensus 219 gsAlh~ 224 (234)
T cd04732 219 GKALYE 224 (234)
T ss_pred EHHHHC
T ss_conf 889877