RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780197|ref|YP_003064610.1| triosephosphate isomerase
protein [Candidatus Liberibacter asiaticus str. psy62]
(264 letters)
>gnl|CDD|178816 PRK00042, tpiA, triosephosphate isomerase; Provisional.
Length = 250
Score = 312 bits (803), Expect = 5e-86
Identities = 102/250 (40%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 6 RPLVVGNWKMHGLRLS-LERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVII 64
+P++ GNWKM+ ++++ + +VA+ PP T + K S++ +
Sbjct: 2 KPIIAGNWKMNKTLAEAKALVEELKAALPDADGV-EVAVAPPFTALASVKEALKGSNIKL 60
Query: 65 GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL 124
GAQ+ H + G +TG+ISA ML D G +VI+GHSERR E +V KVK+A AGL
Sbjct: 61 GAQNVHPEDSGAFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGL 120
Query: 125 YPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRVPAVV 182
PI+C+GET EE +G+T EV+ +QL+ +L VIAYEP+WAIGTG+
Sbjct: 121 TPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATPE 180
Query: 183 DLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
+++H+F+R +L + + E +K+RILYGGSV NA + +IDG LVGGASL+ E
Sbjct: 181 QAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAED 240
Query: 243 FLKIVEIVER 252
FL IV+
Sbjct: 241 FLAIVKAAAA 250
>gnl|CDD|185560 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 224 bits (573), Expect = 2e-59
Identities = 97/257 (37%), Positives = 148/257 (57%), Gaps = 20/257 (7%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEG---IRRNSCCIDVAICPPATLIYESSRLCKTSSV 62
+P V GNWK +G + I+++++ ++ + +DV + PP+ I K +
Sbjct: 5 KPFVGGNWKCNG---TKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNF 61
Query: 63 IIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNA 122
I +Q+ + G +TG+ISA ML D G N+ ILGHSERR E + +V KVK+A
Sbjct: 62 KISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALEN 121
Query: 123 GLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP-------VIAYEPIWAIGT 175
GL I+CIGET EE +G+T +VL KQL+ V VIAYEP+WAIGT
Sbjct: 122 GLKVILCIGETLEEREAGQTSDVLSKQLE-----AIVKKVSDEAWDNIVIAYEPVWAIGT 176
Query: 176 GRVPAVVDLEKIHSFVRRILLDRFPEEG-QKMRILYGGSVDVANAEDFSLIENIDGLLVG 234
G+V +++H+F+R+ L ++ + + RI+YGGSV+ N ++ +IDG LVG
Sbjct: 177 GKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVG 236
Query: 235 GASLQHELFLKIVEIVE 251
GASL+ + F+ I++ E
Sbjct: 237 GASLKPD-FVDIIKSAE 252
>gnl|CDD|184422 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 223 bits (569), Expect = 5e-59
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 12/249 (4%)
Query: 6 RPLVVGNWKMHGLRLS----LERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSS 61
+P++ GNWKM+ + ++K V+ + +V +CPP T + S+
Sbjct: 398 KPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQA-----EVVVCPPFTALPSVKEAVDGSN 452
Query: 62 VIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121
+ +GAQ+ E G YTG+IS MLA+ G +VI+GHSERR E +V KV +A
Sbjct: 453 IKLGAQNVFYEEKGAYTGEISGPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALK 512
Query: 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP--SEFKSSVPVIAYEPIWAIGTGRVP 179
AGL PI+C+GET +E SG TF+V++ QL +L S + VIAYEP+WAIGTG+V
Sbjct: 513 AGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQVKKVVIAYEPVWAIGTGKVA 572
Query: 180 AVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238
+++H+F+R+++ + + EE +K+RILYGGSV NA +IDG LVGGASL
Sbjct: 573 TPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASL 632
Query: 239 QHELFLKIV 247
+ + F I
Sbjct: 633 KAQEFAAIA 641
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional.
Length = 260
Score = 212 bits (541), Expect = 8e-56
Identities = 95/255 (37%), Positives = 143/255 (56%), Gaps = 14/255 (5%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGI--RRNSCCIDVAICPP-------ATLIYESSRL 56
RP+V GNWKM+G S Q++ + + + +V +CPP L+ +
Sbjct: 5 RPMVAGNWKMNG---SAALAQELFKKFAGKLQNDSAEVVLCPPSIYLESVRQLLEANKEA 61
Query: 57 CKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKV 116
S V +GAQ+ ++G YTG++S ML D G +VI+GHSERR + E S +V K
Sbjct: 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKF 121
Query: 117 KSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPS--EFKSSVPVIAYEPIWAIG 174
+A GL PI+C+GE+ + RTFEV+ ++LD + +IAYEP+WA+G
Sbjct: 122 AAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAVG 181
Query: 175 TGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVG 234
TG+ +++H+F+R+ L + P G+ +RILYGGSV +NA D ++DG L+G
Sbjct: 182 TGKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIG 241
Query: 235 GASLQHELFLKIVEI 249
GASL FL + I
Sbjct: 242 GASLNSTEFLSLCTI 256
>gnl|CDD|184748 PRK14565, PRK14565, triosephosphate isomerase; Provisional.
Length = 237
Score = 197 bits (503), Expect = 2e-51
Identities = 91/247 (36%), Positives = 134/247 (54%), Gaps = 14/247 (5%)
Query: 8 LVVGNWKMHGLRLSLER-IQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGA 66
L+V NWKM+G ++++ + N + + ICPP T + ++ +GA
Sbjct: 4 LIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECN--PNIKLGA 61
Query: 67 QDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP 126
Q+C G YTG+ISA ML +CG ++VILGHSERR E ++ K +SA +GL P
Sbjct: 62 QNCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIP 121
Query: 127 IVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEK 186
I+C+GET E+ +G T +VL +Q LP + +IAYEP+WAIG +P+ + +
Sbjct: 122 IICVGETLEDRENGMTKDVLLEQCSNCLPKHGEF---IIAYEPVWAIGGSTIPSNDAIAE 178
Query: 187 IHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKI 246
+R K I+YGGSV+ N D I + G+LVG ASL + F KI
Sbjct: 179 AFEIIR--------SYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKI 230
Query: 247 VEIVERV 253
++ VE V
Sbjct: 231 IQQVEEV 237
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
Length = 253
Score = 157 bits (399), Expect = 2e-39
Identities = 92/244 (37%), Positives = 135/244 (55%), Gaps = 10/244 (4%)
Query: 9 VVGNWKMHGLRLSLERIQKIV----EGIRRNSCCIDVAICPPATLIYESSRLCKTSSVII 64
V GNWK +G ++E ++KIV E + ++V + PP + L + +
Sbjct: 7 VGGNWKCNG---TVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPD-FQV 62
Query: 65 GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL 124
AQ+C + + G +TG+ISA ML + G +VILGHSERR E + V KV A + GL
Sbjct: 63 AAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGL 122
Query: 125 YPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDL 184
I C+GET E+ SG T +V+ Q + V+AYEP+WAIGTG+V
Sbjct: 123 KVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPAQA 182
Query: 185 EKIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243
+++H +R+ L PE RI+YGGSV AN ++ + ++DG LVGGASL+ E F
Sbjct: 183 QEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLKPE-F 241
Query: 244 LKIV 247
+ I+
Sbjct: 242 IDII 245
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
Length = 253
Score = 154 bits (390), Expect = 2e-38
Identities = 86/253 (33%), Positives = 150/253 (59%), Gaps = 7/253 (2%)
Query: 5 IRPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYES-SRLCKTSSVI 63
++ L++GNWKM+G S++ + + ++ ++ + +A+ P + + E S+L + V
Sbjct: 1 MQKLIMGNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVISQLPE--KVG 58
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+G Q+ + G YTG+ISA ML D G +++++GHSERR E V K+ +
Sbjct: 59 VGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTT 118
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDC---SLPSEFKSSVPVIAYEPIWAIGTGRVPA 180
+ P+VCIGE+ ++ +SG+ +VL QL +L E + V VIAYEP+WAIGTG V +
Sbjct: 119 ITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKV-VIAYEPVWAIGTGVVAS 177
Query: 181 VVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240
+ +++ H F+R +L + ++I+YGGS+ NA+D + ++DG L+GGASL+
Sbjct: 178 LEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKA 237
Query: 241 ELFLKIVEIVERV 253
F +I+ ++
Sbjct: 238 AEFNEIINQANKI 250
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 141 bits (357), Expect = 1e-34
Identities = 89/220 (40%), Positives = 123/220 (55%), Gaps = 16/220 (7%)
Query: 39 IDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGH 98
+DV + PP I + + T + I Q+ + + G +TG+IS L D G +VILGH
Sbjct: 97 VDVVVSPPFVYI-DQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGH 155
Query: 99 SERR--IGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPS 156
SERR IG +++ + K A + GL I CIGE EE +G+TF+V QL
Sbjct: 156 SERRHVIGEKDE--FIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQL-----K 208
Query: 157 EFKSSVP-----VIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEE-GQKMRILY 210
F +VP V+AYEP+WAIGTG+V + +++H VR L EE K RI+Y
Sbjct: 209 AFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIY 268
Query: 211 GGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIV 250
GGSV+ N+ + + E+IDG LVGGASL+ F IV V
Sbjct: 269 GGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSV 308
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional.
Length = 260
Score = 135 bits (340), Expect = 2e-32
Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 22 LERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSS----VIIGAQDCHIAEYGPY 77
L ++ ++ + I + I++ + P T I ++ +IIGAQ+ + + G +
Sbjct: 23 LAKLSELADDIPADKD-IELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQF 81
Query: 78 TGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEY 137
TGDIS ML + G V++GHSERR E +KV +A ++C+GET E+
Sbjct: 82 TGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQK 141
Query: 138 RSGRTFEVLQKQLDCSL----PSEFKSSVPVIAYEPIWAIGTGRVPAVVDL--EKIHSFV 191
G + E+L+ QL L P + + IAYEP+WAIG +PA D EK H+ +
Sbjct: 142 NYGISDEILRTQLKIGLHGINPDQL--AKLRIAYEPVWAIGEAGIPASADYADEK-HAVI 198
Query: 192 RRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVE 248
++ L++ F + G + + YGGSV+ NA + +IDGL +G ++ + F I+E
Sbjct: 199 KQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDADKFFAIIE 255
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
glucose/sucrose-specific transporter subunit IIB;
Provisional.
Length = 355
Score = 127 bits (321), Expect = 3e-30
Identities = 71/217 (32%), Positives = 120/217 (55%), Gaps = 7/217 (3%)
Query: 39 IDVAICPPATLIYESSRLCKTSS----VIIGAQDCHIAEYGPYTGDISANMLADCGANFV 94
I++ + P + ++ + + + IGAQ+ + + G +TG+IS ML + G V
Sbjct: 40 IELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKGQFTGEISPLMLKELGIELV 99
Query: 95 ILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSL 154
++GHSERR +E KV +A G ++CIGET E+ + EVL+ QL L
Sbjct: 100 MIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGL 159
Query: 155 PSEFKSSVP--VIAYEPIWAIGTGRVPAVVDL-EKIHSFVRRILLDRFPEEGQKMRILYG 211
+P IAYEP+WAIG G +PA + ++ H+ +++ L + F EE +K+ +LYG
Sbjct: 160 HGVSAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYG 219
Query: 212 GSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVE 248
GSV++ NA + + +IDGL +G ++ + F ++
Sbjct: 220 GSVNLENANELIMKPHIDGLFIGRSAWDAQCFHALIA 256
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family.
Length = 205
Score = 112 bits (281), Expect = 1e-25
Identities = 59/237 (24%), Positives = 91/237 (38%), Gaps = 35/237 (14%)
Query: 8 LVVGNWKMHGLRLSLERIQKIVEGIRRN---SCCIDVAICPPATLIYESSRLCKTSSVII 64
LV+GNWK S V I + VA+ PP + R + +
Sbjct: 1 LVIGNWK--TYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKR---EVEIPV 55
Query: 65 GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL 124
AQ G +TG+ISA ML D GA ++ HSERR + ++ K+ GL
Sbjct: 56 YAQHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERR--MKLAD--IEKKIARLKELGL 111
Query: 125 YPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDL 184
+VC VL +L + +A EP IGTG +
Sbjct: 112 TSVVCTN------------NVLTTAAAAALEPDV------VAVEPPELIGTGIPVSPAQP 153
Query: 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241
E +H VR + E + +R+L G + + + +G+L+ SL+ +
Sbjct: 154 EVVHGSVRAV-----KEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKAD 205
>gnl|CDD|179815 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
Length = 223
Score = 61.4 bits (150), Expect = 2e-10
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 30/171 (17%)
Query: 24 RIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHI--AEYGPYTGDI 81
I K E + + + + +A+ P A I R+ + + + AQ H+ E G +TG I
Sbjct: 23 EIAKAAEKVSKETG-VRIAVAPQALDIR---RVAEEVDIPVYAQ--HVDPVEPGSHTGHI 76
Query: 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGR 141
+ D GA ++ HSERR+ + +++ V+ A GL +VC+ E +
Sbjct: 77 LPEAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCV-NNPETSAAAA 131
Query: 142 TFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVR 192
D +A EP IGTG + E + V
Sbjct: 132 ALGP-----DY------------VAVEPPELIGTGIPVSKAKPEVVEDAVE 165
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 29.4 bits (66), Expect = 0.94
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 25/97 (25%)
Query: 90 GANFV--ILGHSERRIGHREDSYVVQSKVKS------ACNAGLYPIVCIGETDEEYR--- 138
GAN V I+ H+E I ++V +SK+ S C++ L IV G+ E +
Sbjct: 137 GANAVEFIINHAEVSI-----AFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEA 191
Query: 139 --------SGRTFEVLQKQLDCSLPSEFKSSVPVIAY 167
S F ++ LDC LP + K+ + I Y
Sbjct: 192 EELGVSCFSWEEFSLMGS-LDCELPPKQKTDICTIMY 227
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 28.6 bits (65), Expect = 1.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 173 IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMR 207
I G+ +LE IH + L +R + G K+
Sbjct: 72 IEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLH 106
>gnl|CDD|151718 pfam11277, Med24_N, Mediator complex subunit 24 N-terminal. This
subunit of the Mediator complex appears to be conserved
only from insects to humans. It is essential for correct
retinal development in fish. Subunit composition of the
mediator contributes to the control of differentiation
in the vertebrate CNS as there are divergent functions
of the mediator subunits Crsp34/Med27, Trap100/Med24,
and Crsp150/Med14.
Length = 991
Score = 27.1 bits (60), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 20 LSLERIQKIVEGIRRNSCCIDVAICPPATLI 50
LS E I+KI++ I+ C A+C + L
Sbjct: 597 LSSEEIKKILDNIKGKVCSF--AVCAVSWLC 625
>gnl|CDD|151802 pfam11361, DUF3159, Protein of unknown function (DUF3159). Some
members in this family of proteins with unknown function
are annotated as membrane proteins however this cannot
be confirmed. Currently this family of proteins has no
known function.
Length = 188
Score = 26.4 bits (59), Expect = 8.2
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 160 SSVPVIAYEPIWAIGTGRVPAVV 182
S++P + + + I G A++
Sbjct: 10 SALPGVVFVVAFTITAGLTLAII 32
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,338,433
Number of extensions: 274323
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 24
Length of query: 264
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,006,537
Effective search space: 689124364
Effective search space used: 689124364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)