RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780197|ref|YP_003064610.1| triosephosphate isomerase
protein [Candidatus Liberibacter asiaticus str. psy62]
(264 letters)
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
[TaxId: 2336]}
Length = 252
Score = 178 bits (452), Expect = 4e-46
Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 4/251 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ ++ GNWKMH ++ ++ + ++ +CPP T + E + ++ +G
Sbjct: 3 KLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLG 62
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+ + G +TG+IS ML + G +VI+GHSERR +ED + KVK+ G+
Sbjct: 63 AQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMT 122
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLD--CSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
PI+C+GET EE G TF V++KQ+ + ++ VIAYEP+WAIGTGRV
Sbjct: 123 PILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQ 182
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
+++H+F+R++L + + EE +RILYGGS+ N + ++IDG LVGGASL+
Sbjct: 183 AQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKES- 241
Query: 243 FLKIVEIVERV 253
F+++ I+ V
Sbjct: 242 FIELARIMRGV 252
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 246
Score = 176 bits (447), Expect = 2e-45
Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 4/244 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ V GNWKM+G + +L + + + + +V PP I + +R + +
Sbjct: 3 KFFVGGNWKMNGRKKNLGELITTLNAAKVPADT-EVVCAPPTAYI-DFARQKLDPKIAVA 60
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+C+ G +TG+IS M+ DCGA +V+LGHSERR E ++ KV A + GL
Sbjct: 61 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 120
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
I CIGE +E +G T +V+ +Q + S V+AYEP+WAIGTG+ +
Sbjct: 121 VIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQ 180
Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
++H +R L + Q RI+YGGSV A ++ + ++DG LVGGASL+ E F+
Sbjct: 181 EVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE-FV 239
Query: 245 KIVE 248
I+
Sbjct: 240 DIIN 243
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 175 bits (443), Expect = 4e-45
Identities = 93/250 (37%), Positives = 142/250 (56%), Gaps = 2/250 (0%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
PLV+GNWK++G R + + + VAI PP I + R + S +++G
Sbjct: 3 HPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLG 62
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+ ++ G +TG+ SA ML D GA ++I+GHSERR H+E ++ K GL
Sbjct: 63 AQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLT 122
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRVPAVVD 183
P++CIGET+ E +G+T EV +Q+D L ++ ++ VIAYEP+WAIGTG+
Sbjct: 123 PVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQ 182
Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243
+ +H F+R + +++ I YGGSV+ +NA + +IDG LVGGASL+ + F
Sbjct: 183 AQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAF 242
Query: 244 LKIVEIVERV 253
IV+ E
Sbjct: 243 AVIVKAAEAA 252
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus
[TaxId: 90736]}
Length = 255
Score = 173 bits (439), Expect = 1e-44
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 4/252 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKT--SSVI 63
P+V+GNWK++G + + + + +DVA+ PPA + + R S++I
Sbjct: 2 HPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAII 61
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+GAQ+ + G +TGD+S ML + GA +I+GHSERR H E V K G
Sbjct: 62 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENG 121
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAV 181
L P++CIGE+D + +G T V +QLD + ++ ++ +IAYEPIWAIGTG+
Sbjct: 122 LTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATA 181
Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241
D ++IH+ +R + ++ + + I YGGSV NA + +IDG LVGGA+L +
Sbjct: 182 EDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAK 241
Query: 242 LFLKIVEIVERV 253
F I +
Sbjct: 242 SFAAIAKAAAEA 253
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 251
Score = 171 bits (435), Expect = 4e-44
Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 3/246 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+P++ GNWKM+G + + V+G + + +C P + + + + IG
Sbjct: 2 KPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIG 61
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ H A+ G YTG++S ML D G +VILGHSERR E V KV +A GL
Sbjct: 62 AQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121
Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
PI+C GE+ EE +G+T Q + + + + VIAYEPIWAIGTG+ D
Sbjct: 122 PIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPED 181
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
+ +R ++ F E + +RI YGGSV N DF + IDG LVGGASL+
Sbjct: 182 ANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPAS 241
Query: 243 FLKIVE 248
FL++VE
Sbjct: 242 FLQLVE 247
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 257
Score = 165 bits (419), Expect = 3e-42
Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 4/244 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ V GNWKM+G S++ I + NS DV + PPA + + K V++
Sbjct: 12 KFFVGGNWKMNGDYASVDGIVTFLNASADNSSV-DVVVAPPAPYLAYAKSKLKAG-VLVA 69
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+C+ G +TG+IS M+ D G +VILGHSERR E ++ K A AG+
Sbjct: 70 AQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIK 129
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
+ CIGE EE +G T +V +QL + VIAYEP+WAIGTG+ + +
Sbjct: 130 VVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQ 189
Query: 186 KIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
++H ++R L ++ P RI+YGGSV NA + +IDG LVGGASL+ + F+
Sbjct: 190 EVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPD-FV 248
Query: 245 KIVE 248
KI+
Sbjct: 249 KIIN 252
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
[TaxId: 5665]}
Length = 249
Score = 163 bits (414), Expect = 1e-41
Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 10/250 (4%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRN--SCCIDVAICPPATLIYESSRLCKTSSVI 63
+P+ NWK +G + I+K+V+ + S + + P I + +
Sbjct: 4 QPIAAANWKCNG---TTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLR-NPKY 59
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+ + IA+ G +TG++S +L D G ++VILGHSERR + E +V KV AC G
Sbjct: 60 VISAQNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQG 119
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKS--SVPVIAYEPIWAIGTGRVPAV 181
I CIGET ++ + +T +V+ Q K + V+AYEP+WAIGTG+V
Sbjct: 120 FMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATP 179
Query: 182 VDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240
+++H +R+ + + + K+RILYGGSV+ ANA +I+G LVGGASL+
Sbjct: 180 EQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP 239
Query: 241 ELFLKIVEIV 250
E F I++
Sbjct: 240 E-FRDIIDAT 248
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 247
Score = 162 bits (411), Expect = 2e-41
Identities = 99/246 (40%), Positives = 148/246 (60%), Gaps = 7/246 (2%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTSSVI 63
V GN+K++G S + I++IVE + S ++V ICPPAT + S L K V
Sbjct: 3 TFFVGGNFKLNG---SKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVT 59
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+GAQ+ ++ G +TG+ S + + D GA +VILGHSERR ED + K K A G
Sbjct: 60 VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 119
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
+ I+CIGET EE ++G+T +V+++QL+ L + V+AYEP+WAIGTG D
Sbjct: 120 VGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVWAIGTGLAATPED 179
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
+ IH+ +R+ L + ++ ++RILYGGS + +NA F ++DG LVGGASL+ E
Sbjct: 180 AQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE- 238
Query: 243 FLKIVE 248
F+ I+
Sbjct: 239 FVDIIN 244
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 162 bits (411), Expect = 3e-41
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 3/244 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ V NWK +G S++ + + + +DV + P + + +L ++ G
Sbjct: 2 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSK-FSTG 60
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
Q+ G YTG++SA + D +VI+GH ERR E V+ K++++ L
Sbjct: 61 IQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLK 120
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
+VC GE+ E+ +T EV+ KQ+ + ++ YEP+WAIGTG+ +
Sbjct: 121 AVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQ 180
Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
+H +R+I+ D E+ ++RILYGGSV+ N E+IDG LVG ASL+ F+
Sbjct: 181 LVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKES-FV 239
Query: 245 KIVE 248
I++
Sbjct: 240 DIIK 243
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 162 bits (411), Expect = 3e-41
Identities = 87/254 (34%), Positives = 135/254 (53%), Gaps = 8/254 (3%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIR--RNSCCIDVAICPPATLIYESSRLCKTS--- 60
+ +V GNWK +G S+E + K V + ++V + P I + ++
Sbjct: 4 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANG 63
Query: 61 SVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSAC 120
+ I+ + + + G YTG++ ML DC +VILGHSERR E + V KVK A
Sbjct: 64 ANILVSAENAWTKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAI 123
Query: 121 NAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRV 178
+AGL I CIGET+ + + +T EV+ QL + K + ++AYEP+WAIGTG+
Sbjct: 124 DAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKT 183
Query: 179 PAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237
+++H ++R+ + + +E + RI YGGSV+ AN + + +IDG LVGGAS
Sbjct: 184 ATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGAS 243
Query: 238 LQHELFLKIVEIVE 251
L F I+ V
Sbjct: 244 LDAAKFKTIINSVS 257
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei
[TaxId: 5691]}
Length = 249
Score = 152 bits (384), Expect = 3e-38
Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 6/249 (2%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+P+ NWK +G + SL + + N + + + + + +
Sbjct: 4 QPIAAANWKCNGSQQSLSELIDLFNSTSIN-HDVQCVVASTFVHLAMTKE-RLSHPKFVI 61
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
A IA+ G +TG++S +L D G N+++LGHSERR + E + +V KV +A +G
Sbjct: 62 AAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFM 121
Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
I CIGET +E SGRT + Q + + VIAYEP+WAIGTG+V
Sbjct: 122 VIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQ 181
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
++ H+ + + + + ++RILYGGSV+ NA +++G LVGGASL+ E
Sbjct: 182 AQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE- 240
Query: 243 FLKIVEIVE 251
F+ I++ +
Sbjct: 241 FVDIIKATQ 249
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 122 bits (306), Expect = 3e-29
Identities = 45/251 (17%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCKTSSVI 63
P+++ N+K +G + +R ++ + R + +++ + P + + ++ +
Sbjct: 3 LPILIINFKAYG-EAAGKRAVELAKAAERAARELGVNIVVAPNHLEL---GLVSQSVDIP 58
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+ AQ + G +T +S + + G + VIL HSE + + V A + G
Sbjct: 59 VYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKL----NDLARLVAKAKSLG 114
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
L +VC + + +A EP IGTGR +
Sbjct: 115 LDVVVCAPDPRTSLAAAALGPH------------------AVAVEPPELIGTGRAVSRYK 156
Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-HEL 242
E I V ++ ++ G ++ + +L G+L+ A+++ +
Sbjct: 157 PEAIVETVGL-----VSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDP 211
Query: 243 FLKIVEIVERV 253
+ KIVE+ + +
Sbjct: 212 YAKIVELAKPL 222
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 106 bits (265), Expect = 2e-24
Identities = 39/245 (15%), Positives = 84/245 (34%), Gaps = 33/245 (13%)
Query: 6 RPLVVGNWKMHGLRLSLE--RIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVI 63
P++ N+K + I K E + + + + + P + + ++ +
Sbjct: 5 EPIIAINFKTYIEATGKRALEIAKAAEKVYKETGV-TIVVAPQLVDL---RMIAESVEIP 60
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+ AQ + G +TG + + + GA +L HSE +R +++ ++ A G
Sbjct: 61 VFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSE----NRMILADLEAAIRRAEEVG 116
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
L +VC +A EP IGTG +
Sbjct: 117 LMTMVCSNNPAVSAAVAALNPD------------------YVAVEPPELIGTGIPVSKAK 158
Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243
E I + V + + ++++L G + ++ G+L+ + +
Sbjct: 159 PEVITNTVELV-----KKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDP 213
Query: 244 LKIVE 248
K +
Sbjct: 214 EKAIW 218
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId:
2021]}
Length = 302
Score = 32.5 bits (73), Expect = 0.034
Identities = 17/155 (10%), Positives = 37/155 (23%), Gaps = 7/155 (4%)
Query: 70 HIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIV- 128
Y +T + + GAN V + S + V + + L ++
Sbjct: 27 PHNWYPQHTQAFAD--IKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLE 84
Query: 129 CIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIH 188
T +SG + L S + + V
Sbjct: 85 VHDTTGYGEQSGASTLDQAVDYWIELKSVLQGEEDYVLINIGNEPYGNDSATVAA----W 140
Query: 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFS 223
+ + R G + ++ + +
Sbjct: 141 ATDTSAAIQRLRAAGFEHTLVVDAPNWGQDWTNTM 175
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.1 bits (62), Expect = 0.74
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 169 PIWAIGTGRVPAVVDLEKIHS--FVRRIL 195
PI+ G P LE + RIL
Sbjct: 178 PIYFAGVSEKPE--GLEPFYPERLAGRIL 204
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602
[TaxId: 244966]}
Length = 297
Score = 26.4 bits (57), Expect = 2.5
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 85 MLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFE 144
+A+ GAN V + S+ ++D V++ + A + L ++ + +
Sbjct: 40 GIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLVAVLEVHDATGYDSIASLNR 99
Query: 145 VLQKQLDCSLPSEFKSSVPVIAYEPI 170
+ ++ S +
Sbjct: 100 AVDYWIEMR--SALIGKEDTVIINIA 123
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 26.0 bits (57), Expect = 3.7
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 2 KVGIRPLVVGNWKMHGLRLSLER 24
K+GIRP++ G G+R SLE
Sbjct: 8 KIGIRPVIDGRR--MGVRESLEE 28
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 DLEKIHSFVRRILLDRFPEEGQKMRILYG 211
+LEK+ + +IL FPE+ K LYG
Sbjct: 4 ELEKVKERIEQILSQFFPEQIMKDLPLYG 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,946
Number of extensions: 47350
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 20
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)