Query         gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Mon May 23 12:32:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780198.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1mhca2 d.19.1.1 (A:1-181) Cla  22.0      20  0.0015   14.7   1.8   18   22-39    158-175 (181)
  2 d1qnta2 c.55.7.1 (A:6-91) O6-a  19.7      18  0.0013   14.9   1.2   11   26-36     55-65  (86)
  3 d3frua2 d.19.1.1 (A:1-178) Fc   18.7      26  0.0019   14.1   1.8   19   20-38    153-171 (178)
  4 d1kjva2 d.19.1.1 (A:1-181) Cla  14.3      36  0.0026   13.3   1.8   18   22-39    158-175 (181)
  5 d1neza2 d.19.1.1 (A:1-181) Cla  12.8      40  0.0029   13.0   1.8   18   22-39    158-175 (181)
  6 d1de4a2 d.19.1.1 (A:4-181) Hem  12.5      38  0.0028   13.2   1.3   18   21-38    155-172 (178)
  7 d2b6ca1 a.118.1.17 (A:3-215) H  12.4      35  0.0025   13.4   1.1   14   22-35    168-181 (213)
  8 d1k5na2 d.19.1.1 (A:1-181) Cla  10.5      48  0.0035   12.6   1.8   17   22-38    158-174 (181)
  9 d1t7va2 d.19.1.1 (A:5-183) Zin  10.4      48  0.0035   12.6   1.8   17   22-38    156-172 (179)
 10 d1onqa2 d.19.1.1 (A:7-183) CD1   9.8      51  0.0037   12.5   1.8   16   23-38    155-170 (177)

No 1  
>d1mhca2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2M3 [TaxId: 10090]}
Probab=22.00  E-value=20  Score=14.68  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=14.4

Q ss_pred             HHHCCHHHHHHHHHHHHH
Q ss_conf             852561489999999999
Q gi|254780198|r   22 FFMNKQCAWWLRVFLPFL   39 (69)
Q Consensus        22 ffmnkqcawwlrvflpfl   39 (69)
                      -++...|-.||+-||.+-
T Consensus       158 ~yl~~~C~~wL~~yL~~g  175 (181)
T d1mhca2         158 AYVEGECLELLHRFLRNG  175 (181)
T ss_dssp             HHHHTHHHHHHHHHHHHS
T ss_pred             HHHHCHHHHHHHHHHHHH
T ss_conf             778576389999999855


No 2  
>d1qnta2 c.55.7.1 (A:6-91) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.71  E-value=18  Score=14.94  Aligned_cols=11  Identities=36%  Similarity=1.075  Sum_probs=9.2

Q ss_pred             CHHHHHHHHHH
Q ss_conf             61489999999
Q gi|254780198|r   26 KQCAWWLRVFL   36 (69)
Q Consensus        26 kqcawwlrvfl   36 (69)
                      +||.=||+.+.
T Consensus        55 ~qC~~WL~aYF   65 (86)
T d1qnta2          55 MQCTAWLNAYF   65 (86)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999980


No 3  
>d3frua2 d.19.1.1 (A:1-178) Fc (IgG) receptor, alpha-1 and alpha-2 domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.74  E-value=26  Score=14.06  Aligned_cols=19  Identities=21%  Similarity=0.139  Sum_probs=15.2

Q ss_pred             HHHHHCCHHHHHHHHHHHH
Q ss_conf             9985256148999999999
Q gi|254780198|r   20 TCFFMNKQCAWWLRVFLPF   38 (69)
Q Consensus        20 tcffmnkqcawwlrvflpf   38 (69)
                      .-.++...|-.||+-+|.+
T Consensus       153 ~k~yL~~~Ci~wL~~yL~~  171 (178)
T d3frua2         153 ESEFLLTSCPERLLGHLER  171 (178)
T ss_dssp             HHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHCHHHHHHHHHHHH
T ss_conf             9988848448999999985


No 4  
>d1kjva2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Rat (Rattus norvegicus), RT1-AA [TaxId: 10116]}
Probab=14.34  E-value=36  Score=13.31  Aligned_cols=18  Identities=22%  Similarity=0.445  Sum_probs=14.1

Q ss_pred             HHHCCHHHHHHHHHHHHH
Q ss_conf             852561489999999999
Q gi|254780198|r   22 FFMNKQCAWWLRVFLPFL   39 (69)
Q Consensus        22 ffmnkqcawwlrvflpfl   39 (69)
                      -++...|-.||+-||.+-
T Consensus       158 ~yl~~~C~~~L~~yL~~g  175 (181)
T d1kjva2         158 AYLEGECVESLRRYLELG  175 (181)
T ss_dssp             HHHHTHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHH
T ss_conf             888678599999999862


No 5  
>d1neza2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), tla(c), H-2 class [TaxId: 10090]}
Probab=12.77  E-value=40  Score=13.05  Aligned_cols=18  Identities=17%  Similarity=0.205  Sum_probs=14.4

Q ss_pred             HHHCCHHHHHHHHHHHHH
Q ss_conf             852561489999999999
Q gi|254780198|r   22 FFMNKQCAWWLRVFLPFL   39 (69)
Q Consensus        22 ffmnkqcawwlrvflpfl   39 (69)
                      -|+...|-.||+-+|.+-
T Consensus       158 ~yl~~~C~~~L~kyL~~g  175 (181)
T d1neza2         158 TYLEGPCKDSLLRYLENR  175 (181)
T ss_dssp             HHHHTHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHC
T ss_conf             888576079999999715


No 6  
>d1de4a2 d.19.1.1 (A:4-181) Hemochromatosis protein Hfe, alpha-1 and alpha-2 domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.55  E-value=38  Score=13.20  Aligned_cols=18  Identities=17%  Similarity=0.462  Sum_probs=14.1

Q ss_pred             HHHHCCHHHHHHHHHHHH
Q ss_conf             985256148999999999
Q gi|254780198|r   21 CFFMNKQCAWWLRVFLPF   38 (69)
Q Consensus        21 cffmnkqcawwlrvflpf   38 (69)
                      --|+...|--||+-+|.+
T Consensus       155 k~yLe~~C~~~L~~yL~~  172 (178)
T d1de4a2         155 RAYLERDCPAQLQQLLEL  172 (178)
T ss_dssp             HHHHHTHHHHHHHHHHHT
T ss_pred             HHHHHCHHHHHHHHHHHH
T ss_conf             845747648999999985


No 7  
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}
Probab=12.45  E-value=35  Score=13.40  Aligned_cols=14  Identities=43%  Similarity=1.018  Sum_probs=9.7

Q ss_pred             HHHCCHHHHHHHHH
Q ss_conf             85256148999999
Q gi|254780198|r   22 FFMNKQCAWWLRVF   35 (69)
Q Consensus        22 ffmnkqcawwlrvf   35 (69)
                      ||.+|-.+|+||..
T Consensus       168 ~~i~kAigW~Lre~  181 (213)
T d2b6ca1         168 FFIQKAIGWSLRQY  181 (213)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 8  
>d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
Probab=10.49  E-value=48  Score=12.62  Aligned_cols=17  Identities=29%  Similarity=0.800  Sum_probs=13.9

Q ss_pred             HHHCCHHHHHHHHHHHH
Q ss_conf             85256148999999999
Q gi|254780198|r   22 FFMNKQCAWWLRVFLPF   38 (69)
Q Consensus        22 ffmnkqcawwlrvflpf   38 (69)
                      -++...|--||+-||++
T Consensus       158 ~yl~~~C~~~L~~yL~~  174 (181)
T d1k5na2         158 AYLEGECVEWLRRYLEN  174 (181)
T ss_dssp             HHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             57854758999999985


No 9  
>d1t7va2 d.19.1.1 (A:5-183) Zinc-alpha-2-glycoprotein, ZAG {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.42  E-value=48  Score=12.61  Aligned_cols=17  Identities=24%  Similarity=0.681  Sum_probs=14.0

Q ss_pred             HHHCCHHHHHHHHHHHH
Q ss_conf             85256148999999999
Q gi|254780198|r   22 FFMNKQCAWWLRVFLPF   38 (69)
Q Consensus        22 ffmnkqcawwlrvflpf   38 (69)
                      -++...|--||+-+|.+
T Consensus       156 ~yl~~~C~~~L~kyL~~  172 (179)
T d1t7va2         156 AYLEEECPATLRKYLKY  172 (179)
T ss_dssp             HHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             78865769999999986


No 10 
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human (Homo sapiens), CD1a [TaxId: 9606]}
Probab=9.79  E-value=51  Score=12.48  Aligned_cols=16  Identities=13%  Similarity=0.424  Sum_probs=0.0

Q ss_pred             HHCCHHHHHHHHHHHH
Q ss_conf             5256148999999999
Q gi|254780198|r   23 FMNKQCAWWLRVFLPF   38 (69)
Q Consensus        23 fmnkqcawwlrvflpf   38 (69)
                      ++...|--||+-+|++
T Consensus       155 yL~~~Cv~~Lk~yL~y  170 (177)
T d1onqa2         155 LLSDTCPRFILGLLDA  170 (177)
T ss_dssp             HHHTHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHH
T ss_conf             9748028999999996


Done!