RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780198|ref|YP_003064611.1| hypothetical protein
CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)



>3bvs_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA repair,
          hydrolase; 2.10A {Bacillus cereus} (A:179-239)
          Length = 61

 Score = 26.3 bits (58), Expect = 1.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 22 FFMNKQCAWWLR 33
          FF+ K   W LR
Sbjct: 3  FFIQKAIGWVLR 14


>2b6c_A Hypothetical protein EF3068; structural genomis, DNA
          repair enzyme, structural genomics, PSI, protein
          structure initiative; HET: SO4; 2.10A {Enterococcus
          faecalis} (A:124-220)
          Length = 97

 Score = 23.9 bits (52), Expect = 8.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 22 FFMNKQCAWWLR 33
          FF+ K   W LR
Sbjct: 50 FFIQKAIGWSLR 61


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.344    0.150    0.535 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 580,300
Number of extensions: 19382
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 25
Length of query: 69
Length of database: 4,956,049
Length adjustment: 36
Effective length of query: 33
Effective length of database: 3,739,069
Effective search space: 123389277
Effective search space used: 123389277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 50 (23.8 bits)