Query gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 160 No_of_seqs 20 out of 22 Neff 2.5 Searched_HMMs 23785 Date Mon May 23 11:30:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780199.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1o04_A Aldehyde dehydrogenase, 29.1 27 0.0011 14.7 4.5 45 23-75 4-48 (500) 2 2vgd_A Enxyn11A; glycoside hyd 28.3 28 0.0012 14.6 6.8 122 7-137 2-154 (218) 3 3emi_A HIA (adhesin); non-adhe 15.8 39 0.0016 13.8 0.9 21 60-81 78-98 (116) 4 1pgx_A Protein G; immunoglobul 14.3 43 0.0018 13.5 0.8 10 40-49 49-58 (83) 5 2dck_A Xylanase J; family 11, 13.9 58 0.0024 12.7 5.8 89 46-137 44-162 (354) 6 3fil_A Immunoglobulin G-bindin 13.8 43 0.0018 13.5 0.7 10 40-49 36-45 (56) 7 1igd_A Protein G; immunoglobul 13.7 43 0.0018 13.5 0.7 10 40-49 41-50 (61) 8 2pw8_I Lepirudin, hirudin vari 12.5 61 0.0025 12.6 1.1 22 128-149 42-63 (65) 9 1mhx_A Immunoglobulin-binding 12.3 49 0.0021 13.2 0.6 10 40-49 45-54 (65) 10 2o2p_A Formyltetrahydrofolate 12.2 65 0.0027 12.4 2.8 27 43-77 41-67 (517) No 1 >1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3inj_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 2vle_A* 1cw3_A* 1ag8_A 1a4z_A Probab=29.05 E-value=27 Score=14.71 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=19.8 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEECCCCCCCEE Q ss_conf 40577765665333767656202572689814468608789984257777466 Q gi|254780199|r 23 SCSALSVVVDSSELLPEPMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVL 75 (160) Q Consensus 23 ac~~~~~~~~~~~~~P~P~gVeG~W~D~NGivSsf~~~G~F~TrstDGTn~~L 75 (160) +.+..|.+-+++.+.....=|+|+|++..+ +..|..+.+- |++++ T Consensus 4 ~~~~~p~~~~~p~~~~~~lyI~G~wv~~~~-------~~~~~v~nPa-tg~~i 48 (500) T 1o04_A 4 ATQAVPAPNQQPEVFCNQIFINNEWHDAVS-------RKTFPTVNPS-TGEVI 48 (500) T ss_dssp ---CCCCCCSSCCCCCCSEEETTEEECCTT-------CCEEEEEETT-TTEEE T ss_pred CCCCCCCCCCCCCCCCCCCEECCEEECCCC-------CCEEEEECCC-CCCEE T ss_conf 556689999996401478258997507999-------9989756799-88867 No 2 >2vgd_A Enxyn11A; glycoside hydrolase, xylanase, beta jelly roll, hydrolase; HET: XYP FX3; 1.8A {Escherichia coli} PDB: 2vuj_A 2vul_A* Probab=28.28 E-value=28 Score=14.62 Aligned_cols=122 Identities=16% Similarity=0.269 Sum_probs=61.6 Q ss_pred EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE-E----EEECCCCEEEEEE-ECCEEEEECCCCCCCEEE---- Q ss_conf 51256899999998764057776566533376765620-2----5726898144686-087899842577774665---- Q gi|254780199|r 7 LSLSFLFPLVAAIAVVSCSALSVVVDSSELLPEPMDIT-G----YWEDDNGILSYFQ-KDGKFKTISTDGSSSVLA---- 76 (160) Q Consensus 7 lsl~~~~~Lv~alav~ac~~~~~~~~~~~~~P~P~gVe-G----~W~D~NGivSsf~-~~G~F~TrstDGTn~~LA---- 76 (160) ++|.++++|.+...+++..+ -.+.-+.+..+|.. | .|.|-.|-++++. .+|.|...=.+ .+..|+ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~tG~~nGy~Y~~W~d~~g~~~~t~~~gG~fs~~W~~-~gnfv~gkGw 76 (218) T 2vgd_A 2 ISLKRVAALLCVAGLGMSAA----NAQTCLTSSQTGTNNGFYYSFWKDSPGTVNFCLQSGGRYTSNWSG-INNWVGGKGW 76 (218) T ss_dssp -------------------------CCEEECSCEEEEETTEEEEEEECSSSEEEEEECSTTEEEEEEES-CSEEEEEEEE T ss_pred CHHHHHHHHHHHHHHCCCCC----CCCEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECC-CCCEEEECCC T ss_conf 00899999999876133445----562076058744159978899957998478995899889989858-9987875875 Q ss_pred ----------EEEEEEECCCEEEEEEEECCCCCCEEEEEEEE------CC-----CEEEEECCCCCEEEEEEEEEECCCC Q ss_conf ----------44688516857999997200388305899960------63-----4366760679879999733210777 Q gi|254780199|r 77 ----------TGSYHVKINQDVEIKLTSLIRNTSGKIQCQFL------DS-----NKLNCLAKDQKQFYLRRTHLTELPS 135 (160) Q Consensus 77 ----------~GTY~~~~~~~VEIn~tSlvR~T~skVnC~L~------sp-----sQLnCTS~sG~QF~L~Rt~~~~~~~ 135 (160) +|+|...++. -|-+|--.|+-.+ ---++ .| ..+---+++|..+.+-|+.-..-|| T Consensus 77 ~~g~~r~i~ysg~~~~~Gns--Yl~vYGWT~nPLV--EYYIVe~wg~~~p~~~~~~~~Gtvt~DG~tY~iy~~~R~nqPS 152 (218) T 2vgd_A 77 QTGSRRNITYSGSFNSPGNG--YLALYGWTTNPLV--EYYVVDSWGSWRPPGSDGTFLGTVNSDGGTYDIYRAQRVNAPS 152 (218) T ss_dssp SSCCSCEEEEEEEEECSSSE--EEEEEEEEETTTE--EEEEEEEESSSCTTGGGSEEEEEEEETTEEEEEEEEEEEEECC T ss_pred CCCCCCEEEEEEEECCCCCE--EEEEEEECCCCCE--EEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC T ss_conf 79998179887887689988--9999972489827--8999955625389988881833699899578999865367870 Q ss_pred CC Q ss_conf 78 Q gi|254780199|r 136 SK 137 (160) Q Consensus 136 ~~ 137 (160) -. T Consensus 153 I~ 154 (218) T 2vgd_A 153 II 154 (218) T ss_dssp TT T ss_pred CC T ss_conf 07 No 3 >3emi_A HIA (adhesin); non-adhesive domain, trimeric autotransporter, cell adhesion; 1.80A {Haemophilus influenzae} Probab=15.77 E-value=39 Score=13.76 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=16.9 Q ss_pred CCEEEEECCCCCCCEEEEEEEE Q ss_conf 8789984257777466544688 Q gi|254780199|r 60 DGKFKTISTDGSSSVLATGSYH 81 (160) Q Consensus 60 ~G~F~TrstDGTn~~LA~GTY~ 81 (160) +|.|+|.++ |||--.+.|.-+ T Consensus 78 ~g~feTV~S-GTnVtF~~GngT 98 (116) T 3emi_A 78 NGDFATVAS-GTNVTFASGNGT 98 (116) T ss_dssp EEEEEEEET-TCCCCCCCCTTE T ss_pred CCCEEEEEC-CCEEEECCCCCC T ss_conf 774678734-634786179843 No 4 >1pgx_A Protein G; immunoglobulin binding protein; 1.66A {Streptococcus} SCOP: d.15.7.1 Probab=14.32 E-value=43 Score=13.47 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=6.9 Q ss_pred CCCCEEEEEC Q ss_conf 6562025726 Q gi|254780199|r 40 PMDITGYWED 49 (160) Q Consensus 40 P~gVeG~W~D 49 (160) ..||+|.|.- T Consensus 49 dngVdGeWtY 58 (83) T 1pgx_A 49 DNGVDGVWTY 58 (83) T ss_dssp HTTCCEEEEE T ss_pred CCCCCCEEEE T ss_conf 5687636873 No 5 >2dck_A Xylanase J; family 11, xylan binding domain (XBM), beta-jelly roll, alkaliphilic xylanase, hydrolase; 2.10A {Bacillus SP} PDB: 2dcj_A Probab=13.86 E-value=58 Score=12.72 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=46.3 Q ss_pred EEECCCCEEEEEE-ECCEEEEECCCCCCCEEEEEEEEEECCC------EEEEEEE--------------ECCCCCCEEEE Q ss_conf 5726898144686-0878998425777746654468851685------7999997--------------20038830589 Q gi|254780199|r 46 YWEDDNGILSYFQ-KDGKFKTISTDGSSSVLATGSYHVKINQ------DVEIKLT--------------SLIRNTSGKIQ 104 (160) Q Consensus 46 ~W~D~NGivSsf~-~~G~F~TrstDGTn~~LA~GTY~~~~~~------~VEIn~t--------------SlvR~T~skVn 104 (160) .|.|..|.++++. .+|.|...=.. .+..|+-.=+..-+.. .+.|++. --.|+--+ - T Consensus 44 ~W~d~~g~~~~t~~~~G~f~~~W~~-~~~~~~~~G~~~~~~~~~~~~g~~~~~y~~~~~~~g~syl~vYGWt~nplv--E 120 (354) T 2dck_A 44 FWKDSGGSGSMTLNSGGTFSAQWSN-VNNILFRKGKKFDETQTHQQIGNMSINYGATYNPNGNSYLTVYGWTVDPLV--E 120 (354) T ss_dssp EEECSSSEEEEEECSTTCEEEEEEE-EEEEEEEEEEECCSCCCHHHHCCEEEEEEEEEEEEEEEEEEEEEEEETTTE--E T ss_pred EEECCCCCEEEEECCCCEEEEEEEC-CCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCE--E T ss_conf 9956998479997899889999828-997588647689998642235867998877987898689999982489707--9 Q ss_pred EEEE------CC---CEEEEECCCCCEEEEEEEEEECCCCCC Q ss_conf 9960------63---436676067987999973321077778 Q gi|254780199|r 105 CQFL------DS---NKLNCLAKDQKQFYLRRTHLTELPSSK 137 (160) Q Consensus 105 C~L~------sp---sQLnCTS~sG~QF~L~Rt~~~~~~~~~ 137 (160) --++ +| .++---+.+|..+.+-|+....-||-. T Consensus 121 yYIve~~g~~~p~~~~~~Gtvt~DG~~Y~i~~~~r~n~PsI~ 162 (354) T 2dck_A 121 FYIVDSWGTWRPPGGTPKGTINVDGGTYQIYETTRYNQPSIK 162 (354) T ss_dssp EEEEEEESSSCSCCSCCCEEEEETTEEEEEEEEEEEEECCTT T ss_pred EEEEEECCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCC T ss_conf 999876577489888231479989917899996103477107 No 6 >3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 1fcc_C 1gb4_A ... Probab=13.82 E-value=43 Score=13.53 Aligned_cols=10 Identities=20% Similarity=0.684 Sum_probs=7.5 Q ss_pred CCCCEEEEEC Q ss_conf 6562025726 Q gi|254780199|r 40 PMDITGYWED 49 (160) Q Consensus 40 P~gVeG~W~D 49 (160) ..||+|.|.- T Consensus 36 ~ngVdG~WtY 45 (56) T 3fil_A 36 DLGVDGEWTY 45 (56) T ss_dssp HTTCCCEEEE T ss_pred CCCCCCEEEE T ss_conf 4698846873 No 7 >1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A Probab=13.65 E-value=43 Score=13.48 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=7.5 Q ss_pred CCCCEEEEEC Q ss_conf 6562025726 Q gi|254780199|r 40 PMDITGYWED 49 (160) Q Consensus 40 P~gVeG~W~D 49 (160) ..||+|.|.- T Consensus 41 ~ngVdG~Wty 50 (61) T 1igd_A 41 DNGVDGVWTY 50 (61) T ss_dssp HTTCCCEEEE T ss_pred CCCCCCEEEE T ss_conf 4698756873 No 8 >2pw8_I Lepirudin, hirudin variant-1; thrombin, sulfotyrosine, hydrolase; HET: TYS; 1.84A {Hirudo medicinalis} PDB: 1hrt_I 2hir_A 5hir_A 4hir_A 6hir_A 3htc_I 4htc_I* 2joo_A 1hic_A Probab=12.47 E-value=61 Score=12.60 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=16.8 Q ss_pred EEEECCCCCCCCHHHHHCCCCC Q ss_conf 3321077778600154377788 Q gi|254780199|r 128 THLTELPSSKPQDDVAEIPEDP 149 (160) Q Consensus 128 t~~~~~~~~~~~~~~~~~~~~~ 149 (160) -.-|.-|.|.-+.|..||||+- T Consensus 42 GEGTpkpqs~~~gDFeeipeey 63 (65) T 2pw8_I 42 GEGTPKPQSHNDGDFEEIPEEY 63 (65) T ss_dssp SCCEECCCC---CCCCCCCGGG T ss_pred CCCCCCCCCCCCCCCCCCCHHH T ss_conf 7787687556887745284776 No 9 >1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune system; 1.80A {Finegoldia magna atcc 29328} SCOP: d.15.7.1 PDB: 1mi0_A Probab=12.33 E-value=49 Score=13.16 Aligned_cols=10 Identities=20% Similarity=0.518 Sum_probs=7.5 Q ss_pred CCCCEEEEEC Q ss_conf 6562025726 Q gi|254780199|r 40 PMDITGYWED 49 (160) Q Consensus 40 P~gVeG~W~D 49 (160) ..||+|.|.- T Consensus 45 ~ngVdG~WtY 54 (65) T 1mhx_A 45 DNGVDGEWTY 54 (65) T ss_dssp HTTCCSEEEE T ss_pred CCCCCCEEEE T ss_conf 5699855773 No 10 >2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* Probab=12.21 E-value=65 Score=12.42 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=0.0 Q ss_pred CEEEEECCCCEEEEEEECCEEEEECCCCCCCEEEE Q ss_conf 20257268981446860878998425777746654 Q gi|254780199|r 43 ITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLAT 77 (160) Q Consensus 43 VeG~W~D~NGivSsf~~~G~F~TrstDGTn~~LA~ 77 (160) |+|+|++..+ +.+|..+.+- |++.+++ T Consensus 41 I~G~wv~~~~-------~~t~~v~nPa-tge~i~~ 67 (517) T 2o2p_A 41 IGGEFVDAEG-------SKTYNTINPT-DGSVICQ 67 (517) T ss_dssp ETTEEECCGG-------GCEEEEECTT-TCCEEEE T ss_pred ECCEECCCCC-------CCEEEEECCC-CCCEEEE T ss_conf 9986717999-------9989713799-9888999 Done!