Query         gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs    20 out of 22
Neff          2.5 
Searched_HMMs 23785
Date          Mon May 23 11:30:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780199.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1o04_A Aldehyde dehydrogenase,  29.1      27  0.0011   14.7   4.5   45   23-75      4-48  (500)
  2 2vgd_A Enxyn11A; glycoside hyd  28.3      28  0.0012   14.6   6.8  122    7-137     2-154 (218)
  3 3emi_A HIA (adhesin); non-adhe  15.8      39  0.0016   13.8   0.9   21   60-81     78-98  (116)
  4 1pgx_A Protein G; immunoglobul  14.3      43  0.0018   13.5   0.8   10   40-49     49-58  (83)
  5 2dck_A Xylanase J; family 11,   13.9      58  0.0024   12.7   5.8   89   46-137    44-162 (354)
  6 3fil_A Immunoglobulin G-bindin  13.8      43  0.0018   13.5   0.7   10   40-49     36-45  (56)
  7 1igd_A Protein G; immunoglobul  13.7      43  0.0018   13.5   0.7   10   40-49     41-50  (61)
  8 2pw8_I Lepirudin, hirudin vari  12.5      61  0.0025   12.6   1.1   22  128-149    42-63  (65)
  9 1mhx_A Immunoglobulin-binding   12.3      49  0.0021   13.2   0.6   10   40-49     45-54  (65)
 10 2o2p_A Formyltetrahydrofolate   12.2      65  0.0027   12.4   2.8   27   43-77     41-67  (517)

No 1  
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3inj_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 2vle_A* 1cw3_A* 1ag8_A 1a4z_A
Probab=29.05  E-value=27  Score=14.71  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             HHCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEECCCCCCCEE
Q ss_conf             40577765665333767656202572689814468608789984257777466
Q gi|254780199|r   23 SCSALSVVVDSSELLPEPMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVL   75 (160)
Q Consensus        23 ac~~~~~~~~~~~~~P~P~gVeG~W~D~NGivSsf~~~G~F~TrstDGTn~~L   75 (160)
                      +.+..|.+-+++.+.....=|+|+|++..+       +..|..+.+- |++++
T Consensus         4 ~~~~~p~~~~~p~~~~~~lyI~G~wv~~~~-------~~~~~v~nPa-tg~~i   48 (500)
T 1o04_A            4 ATQAVPAPNQQPEVFCNQIFINNEWHDAVS-------RKTFPTVNPS-TGEVI   48 (500)
T ss_dssp             ---CCCCCCSSCCCCCCSEEETTEEECCTT-------CCEEEEEETT-TTEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCEECCEEECCCC-------CCEEEEECCC-CCCEE
T ss_conf             556689999996401478258997507999-------9989756799-88867


No 2  
>2vgd_A Enxyn11A; glycoside hydrolase, xylanase, beta jelly roll, hydrolase; HET: XYP FX3; 1.8A {Escherichia coli} PDB: 2vuj_A 2vul_A*
Probab=28.28  E-value=28  Score=14.62  Aligned_cols=122  Identities=16%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE-E----EEECCCCEEEEEE-ECCEEEEECCCCCCCEEE----
Q ss_conf             51256899999998764057776566533376765620-2----5726898144686-087899842577774665----
Q gi|254780199|r    7 LSLSFLFPLVAAIAVVSCSALSVVVDSSELLPEPMDIT-G----YWEDDNGILSYFQ-KDGKFKTISTDGSSSVLA----   76 (160)
Q Consensus         7 lsl~~~~~Lv~alav~ac~~~~~~~~~~~~~P~P~gVe-G----~W~D~NGivSsf~-~~G~F~TrstDGTn~~LA----   76 (160)
                      ++|.++++|.+...+++..+    -.+.-+.+..+|.. |    .|.|-.|-++++. .+|.|...=.+ .+..|+    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~tG~~nGy~Y~~W~d~~g~~~~t~~~gG~fs~~W~~-~gnfv~gkGw   76 (218)
T 2vgd_A            2 ISLKRVAALLCVAGLGMSAA----NAQTCLTSSQTGTNNGFYYSFWKDSPGTVNFCLQSGGRYTSNWSG-INNWVGGKGW   76 (218)
T ss_dssp             -------------------------CCEEECSCEEEEETTEEEEEEECSSSEEEEEECSTTEEEEEEES-CSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCC----CCCEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECC-CCCEEEECCC
T ss_conf             00899999999876133445----562076058744159978899957998478995899889989858-9987875875


Q ss_pred             ----------EEEEEEECCCEEEEEEEECCCCCCEEEEEEEE------CC-----CEEEEECCCCCEEEEEEEEEECCCC
Q ss_conf             ----------44688516857999997200388305899960------63-----4366760679879999733210777
Q gi|254780199|r   77 ----------TGSYHVKINQDVEIKLTSLIRNTSGKIQCQFL------DS-----NKLNCLAKDQKQFYLRRTHLTELPS  135 (160)
Q Consensus        77 ----------~GTY~~~~~~~VEIn~tSlvR~T~skVnC~L~------sp-----sQLnCTS~sG~QF~L~Rt~~~~~~~  135 (160)
                                +|+|...++.  -|-+|--.|+-.+  ---++      .|     ..+---+++|..+.+-|+.-..-||
T Consensus        77 ~~g~~r~i~ysg~~~~~Gns--Yl~vYGWT~nPLV--EYYIVe~wg~~~p~~~~~~~~Gtvt~DG~tY~iy~~~R~nqPS  152 (218)
T 2vgd_A           77 QTGSRRNITYSGSFNSPGNG--YLALYGWTTNPLV--EYYVVDSWGSWRPPGSDGTFLGTVNSDGGTYDIYRAQRVNAPS  152 (218)
T ss_dssp             SSCCSCEEEEEEEEECSSSE--EEEEEEEEETTTE--EEEEEEEESSSCTTGGGSEEEEEEEETTEEEEEEEEEEEEECC
T ss_pred             CCCCCCEEEEEEEECCCCCE--EEEEEEECCCCCE--EEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC
T ss_conf             79998179887887689988--9999972489827--8999955625389988881833699899578999865367870


Q ss_pred             CC
Q ss_conf             78
Q gi|254780199|r  136 SK  137 (160)
Q Consensus       136 ~~  137 (160)
                      -.
T Consensus       153 I~  154 (218)
T 2vgd_A          153 II  154 (218)
T ss_dssp             TT
T ss_pred             CC
T ss_conf             07


No 3  
>3emi_A HIA (adhesin); non-adhesive domain, trimeric autotransporter, cell adhesion; 1.80A {Haemophilus influenzae}
Probab=15.77  E-value=39  Score=13.76  Aligned_cols=21  Identities=29%  Similarity=0.654  Sum_probs=16.9

Q ss_pred             CCEEEEECCCCCCCEEEEEEEE
Q ss_conf             8789984257777466544688
Q gi|254780199|r   60 DGKFKTISTDGSSSVLATGSYH   81 (160)
Q Consensus        60 ~G~F~TrstDGTn~~LA~GTY~   81 (160)
                      +|.|+|.++ |||--.+.|.-+
T Consensus        78 ~g~feTV~S-GTnVtF~~GngT   98 (116)
T 3emi_A           78 NGDFATVAS-GTNVTFASGNGT   98 (116)
T ss_dssp             EEEEEEEET-TCCCCCCCCTTE
T ss_pred             CCCEEEEEC-CCEEEECCCCCC
T ss_conf             774678734-634786179843


No 4  
>1pgx_A Protein G; immunoglobulin binding protein; 1.66A {Streptococcus} SCOP: d.15.7.1
Probab=14.32  E-value=43  Score=13.47  Aligned_cols=10  Identities=20%  Similarity=0.571  Sum_probs=6.9

Q ss_pred             CCCCEEEEEC
Q ss_conf             6562025726
Q gi|254780199|r   40 PMDITGYWED   49 (160)
Q Consensus        40 P~gVeG~W~D   49 (160)
                      ..||+|.|.-
T Consensus        49 dngVdGeWtY   58 (83)
T 1pgx_A           49 DNGVDGVWTY   58 (83)
T ss_dssp             HTTCCEEEEE
T ss_pred             CCCCCCEEEE
T ss_conf             5687636873


No 5  
>2dck_A Xylanase J; family 11, xylan binding domain (XBM), beta-jelly roll, alkaliphilic xylanase, hydrolase; 2.10A {Bacillus SP} PDB: 2dcj_A
Probab=13.86  E-value=58  Score=12.72  Aligned_cols=89  Identities=16%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             EEECCCCEEEEEE-ECCEEEEECCCCCCCEEEEEEEEEECCC------EEEEEEE--------------ECCCCCCEEEE
Q ss_conf             5726898144686-0878998425777746654468851685------7999997--------------20038830589
Q gi|254780199|r   46 YWEDDNGILSYFQ-KDGKFKTISTDGSSSVLATGSYHVKINQ------DVEIKLT--------------SLIRNTSGKIQ  104 (160)
Q Consensus        46 ~W~D~NGivSsf~-~~G~F~TrstDGTn~~LA~GTY~~~~~~------~VEIn~t--------------SlvR~T~skVn  104 (160)
                      .|.|..|.++++. .+|.|...=.. .+..|+-.=+..-+..      .+.|++.              --.|+--+  -
T Consensus        44 ~W~d~~g~~~~t~~~~G~f~~~W~~-~~~~~~~~G~~~~~~~~~~~~g~~~~~y~~~~~~~g~syl~vYGWt~nplv--E  120 (354)
T 2dck_A           44 FWKDSGGSGSMTLNSGGTFSAQWSN-VNNILFRKGKKFDETQTHQQIGNMSINYGATYNPNGNSYLTVYGWTVDPLV--E  120 (354)
T ss_dssp             EEECSSSEEEEEECSTTCEEEEEEE-EEEEEEEEEEECCSCCCHHHHCCEEEEEEEEEEEEEEEEEEEEEEEETTTE--E
T ss_pred             EEECCCCCEEEEECCCCEEEEEEEC-CCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCE--E
T ss_conf             9956998479997899889999828-997588647689998642235867998877987898689999982489707--9


Q ss_pred             EEEE------CC---CEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf             9960------63---436676067987999973321077778
Q gi|254780199|r  105 CQFL------DS---NKLNCLAKDQKQFYLRRTHLTELPSSK  137 (160)
Q Consensus       105 C~L~------sp---sQLnCTS~sG~QF~L~Rt~~~~~~~~~  137 (160)
                      --++      +|   .++---+.+|..+.+-|+....-||-.
T Consensus       121 yYIve~~g~~~p~~~~~~Gtvt~DG~~Y~i~~~~r~n~PsI~  162 (354)
T 2dck_A          121 FYIVDSWGTWRPPGGTPKGTINVDGGTYQIYETTRYNQPSIK  162 (354)
T ss_dssp             EEEEEEESSSCSCCSCCCEEEEETTEEEEEEEEEEEEECCTT
T ss_pred             EEEEEECCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCC
T ss_conf             999876577489888231479989917899996103477107


No 6  
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 1fcc_C 1gb4_A ...
Probab=13.82  E-value=43  Score=13.53  Aligned_cols=10  Identities=20%  Similarity=0.684  Sum_probs=7.5

Q ss_pred             CCCCEEEEEC
Q ss_conf             6562025726
Q gi|254780199|r   40 PMDITGYWED   49 (160)
Q Consensus        40 P~gVeG~W~D   49 (160)
                      ..||+|.|.-
T Consensus        36 ~ngVdG~WtY   45 (56)
T 3fil_A           36 DLGVDGEWTY   45 (56)
T ss_dssp             HTTCCCEEEE
T ss_pred             CCCCCCEEEE
T ss_conf             4698846873


No 7  
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A
Probab=13.65  E-value=43  Score=13.48  Aligned_cols=10  Identities=20%  Similarity=0.571  Sum_probs=7.5

Q ss_pred             CCCCEEEEEC
Q ss_conf             6562025726
Q gi|254780199|r   40 PMDITGYWED   49 (160)
Q Consensus        40 P~gVeG~W~D   49 (160)
                      ..||+|.|.-
T Consensus        41 ~ngVdG~Wty   50 (61)
T 1igd_A           41 DNGVDGVWTY   50 (61)
T ss_dssp             HTTCCCEEEE
T ss_pred             CCCCCCEEEE
T ss_conf             4698756873


No 8  
>2pw8_I Lepirudin, hirudin variant-1; thrombin, sulfotyrosine, hydrolase; HET: TYS; 1.84A {Hirudo medicinalis} PDB: 1hrt_I 2hir_A 5hir_A 4hir_A 6hir_A 3htc_I 4htc_I* 2joo_A 1hic_A
Probab=12.47  E-value=61  Score=12.60  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=16.8

Q ss_pred             EEEECCCCCCCCHHHHHCCCCC
Q ss_conf             3321077778600154377788
Q gi|254780199|r  128 THLTELPSSKPQDDVAEIPEDP  149 (160)
Q Consensus       128 t~~~~~~~~~~~~~~~~~~~~~  149 (160)
                      -.-|.-|.|.-+.|..||||+-
T Consensus        42 GEGTpkpqs~~~gDFeeipeey   63 (65)
T 2pw8_I           42 GEGTPKPQSHNDGDFEEIPEEY   63 (65)
T ss_dssp             SCCEECCCC---CCCCCCCGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCHHH
T ss_conf             7787687556887745284776


No 9  
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune system; 1.80A {Finegoldia magna atcc 29328} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=12.33  E-value=49  Score=13.16  Aligned_cols=10  Identities=20%  Similarity=0.518  Sum_probs=7.5

Q ss_pred             CCCCEEEEEC
Q ss_conf             6562025726
Q gi|254780199|r   40 PMDITGYWED   49 (160)
Q Consensus        40 P~gVeG~W~D   49 (160)
                      ..||+|.|.-
T Consensus        45 ~ngVdG~WtY   54 (65)
T 1mhx_A           45 DNGVDGEWTY   54 (65)
T ss_dssp             HTTCCSEEEE
T ss_pred             CCCCCCEEEE
T ss_conf             5699855773


No 10 
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A*
Probab=12.21  E-value=65  Score=12.42  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=0.0

Q ss_pred             CEEEEECCCCEEEEEEECCEEEEECCCCCCCEEEE
Q ss_conf             20257268981446860878998425777746654
Q gi|254780199|r   43 ITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLAT   77 (160)
Q Consensus        43 VeG~W~D~NGivSsf~~~G~F~TrstDGTn~~LA~   77 (160)
                      |+|+|++..+       +.+|..+.+- |++.+++
T Consensus        41 I~G~wv~~~~-------~~t~~v~nPa-tge~i~~   67 (517)
T 2o2p_A           41 IGGEFVDAEG-------SKTYNTINPT-DGSVICQ   67 (517)
T ss_dssp             ETTEEECCGG-------GCEEEEECTT-TCCEEEE
T ss_pred             ECCEECCCCC-------CCEEEEECCC-CCCEEEE
T ss_conf             9986717999-------9989713799-9888999


Done!