RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein
[Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.9 bits (80), Expect = 0.009
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 59/170 (34%)

Query: 14  PLVAAIAVVSCSALSVVVDS----SEL-------LPEPMDITGYWEDDNGILSYFQKDGK 62
           PL  +   +    L V   S    S+L       LPEP +  G+  DD            
Sbjct: 8   PLTLSHGSLEHV-LLVPTASFFIASQLQEQFNKILPEPTE--GFAADD------------ 52

Query: 63  FKTISTDGSSSVLATGSY--HV--KINQDVEIKLTSLIRNTSGKIQCQFLDSNKLNCLA- 117
                 + ++     G +  +V   +      +   ++     + +  +L+ N ++ LA 
Sbjct: 53  ------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106

Query: 118 -----------KDQK--QFYLRRTHLTELPSSKP---------QDDVAEI 145
                      K ++  + Y+    + + P  K           +  A++
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156



 Score = 33.0 bits (75), Expect = 0.034
 Identities = 40/180 (22%), Positives = 59/180 (32%), Gaps = 77/180 (42%)

Query: 9   LSFLFPLVAAIAVVS-----CSAL--SVVVDS---SELLPEPMDITGYWEDDNGILSYFQ 58
           ++ LF     I V        ++L  S++ DS   +E +P PM            LS   
Sbjct: 300 ITVLF----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------------LS--- 340

Query: 59  KDGKFKTISTDGSSSVLATGSYHV-KINQD------VEIKLTSLI---RN--TSGKIQ-- 104
                  IS + +   +     +V K N        VEI   SL+   +N   SG  Q  
Sbjct: 341 -------IS-NLTQEQVQD---YVNKTNSHLPAGKQVEI---SLVNGAKNLVVSGPPQSL 386

Query: 105 ---CQFLDSNKLNCLA---KDQKQ--FYLRRTHLTE--LPSSKP------QDDVAEIPED 148
                 L   K    A    DQ +  F  R+   +   LP + P            I +D
Sbjct: 387 YGLNLTLRKAK----APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442


>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A
          {Streptococcus pneumoniae} PDB: 2v04_A 2vyu_A
          Length = 311

 Score = 30.0 bits (66), Expect = 0.22
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 9/49 (18%)

Query: 45 GYWEDDNGILSYFQKDGKFKT--ISTDG------SSSVLATGSYHVKIN 85
          G + D +    Y+ KD          DG          +  G  +++I 
Sbjct: 5  GRFVDKDNR-KYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIP 52


>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex,
           bacterial toxin; HET: GLA GAL NAG; 2.00A {Clostridium
           difficile}
          Length = 255

 Score = 29.3 bits (64), Expect = 0.43
 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 11/47 (23%)

Query: 44  TGYWEDDNGILSYFQKDGKFKTIST----DG------SSSVLATGSY 80
           TG W+  NG + YF  D            DG         V A G Y
Sbjct: 209 TG-WQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPGIY 254


>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan,
           beta-lactam insensitive transpeptidase, antibiotic
           resistance, transferase; 2.40A {Enterococcus faecium}
           SCOP: b.160.1.1 d.335.1.1 PDB: 2hkl_A
          Length = 250

 Score = 28.4 bits (63), Expect = 0.78
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 59  KDGKFKTISTDGSSSVLATGSYHVKINQDVEIK-LTSLIRN 98
            D KFK+  T      +  G+Y   I  D E + L   I  
Sbjct: 65  NDTKFKS--TKRGEVTVPVGTYSWTIQTDSETEALKKAILA 103


>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium
           difficile}
          Length = 332

 Score = 28.2 bits (61), Expect = 0.83
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 8/50 (16%)

Query: 44  TGYWEDDNGILSYFQKDGKFKT--ISTDG------SSSVLATGSYHVKIN 85
              +    G + YF  + K  T   + +G        + +A      +I+
Sbjct: 269 QNRFLHLLGKIYYFGNNSKAVTGWQTINGKVYYFMPDTAMAAAGGLFEID 318


>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
           riken structural genomics/proteomics initiative, RSGI;
           HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
           PDB: 1ult_A* 1v26_A*
          Length = 541

 Score = 27.9 bits (61), Expect = 1.0
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 26/136 (19%)

Query: 40  PMDITGYWEDDNGILSYFQKDGKFKT-----ISTDGSSSVLATGSYHVKIN------QDV 88
           P    GY+ ++    S    DG F+T        +G   +       +K         D+
Sbjct: 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450

Query: 89  EIKLTSL--IRN---------TSGKIQCQFLDSNKLNCLAKDQKQFYLRRTHLTELPSSK 137
           E  L     ++             +     +         ++  +  L+          +
Sbjct: 451 ENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKA----GFAKWQ 506

Query: 138 PQDDVAEIPEDPTTPS 153
             D      E P T +
Sbjct: 507 LPDAYVFAEEIPRTSA 522


>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus
           pneumoniae R6}
          Length = 94

 Score = 27.8 bits (61), Expect = 1.3
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 47  WEDDNGILSYFQKDGKFKT--ISTDGSSSVL-ATGSYHVKINQDVEIKLTSLIRNTSGKI 103
           W+ +NG+  ++  DG   T  +  +GS   L + GS  +K+NQ  ++       NTSG++
Sbjct: 18  WKQENGMWYFYNTDGSMATGWVQVNGSWYYLNSNGS--MKVNQWFQVGGKWYYVNTSGEL 75


>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
           human, structural genomics, structural genomics
           consortium, SGC, transferase; HET: GP5; 2.05A {Homo
           sapiens} PDB: 2ar7_A*
          Length = 246

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 3/29 (10%), Positives = 11/29 (37%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGSSSV 74
           Y +    ++  ++  G     S   ++ +
Sbjct: 196 YKDVAKPVIELYKSRGVLHQFSGTETNKI 224


>2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter
           pylori}
          Length = 457

 Score = 27.2 bits (60), Expect = 1.9
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 9/52 (17%)

Query: 43  ITGYWEDDNGILSYFQKDGKFKTISTDGSSSVL-------ATGSYH--VKIN 85
           I G + ++ G ++Y  + GK  T++   +++++       ATG Y   +KIN
Sbjct: 277 IQGDFINNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKIN 328


>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
           AMP; 2.3A {Homo sapiens}
          Length = 199

 Score = 26.9 bits (58), Expect = 2.5
 Identities = 4/26 (15%), Positives = 14/26 (53%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           Y+     +++Y++   +   I+ +G+
Sbjct: 157 YYRASIPVIAYYETKTQLHKINAEGT 182


>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase,
           ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A*
           3adk_A
          Length = 196

 Score = 26.8 bits (58), Expect = 2.5
 Identities = 5/26 (19%), Positives = 17/26 (65%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           Y++    ++++++K G  + ++ +GS
Sbjct: 154 YYKATEPVIAFYEKRGIVRKVNAEGS 179


>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
           nucleotide-binding, transferase, structural genomics;
           1.80A {Thermus thermophilus}
          Length = 186

 Score = 26.4 bits (57), Expect = 2.7
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           Y E    ++ Y++  G  K +   G+
Sbjct: 147 YREKTEPLVGYYEARGVLKRVDGLGT 172


>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
           phosphotransferase, myokinase, structural genomics,
           structural genomics consortium, SGC; 1.48A {Homo
           sapiens} PDB: 2ak3_A*
          Length = 227

 Score = 26.4 bits (57), Expect = 2.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGSSSV 74
           Y +    +L Y+QK G  +T S   ++ +
Sbjct: 176 YEDQTKPVLEYYQKKGVLETFSGTETNKI 204


>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
           cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex
           aeolicus} PDB: 2rh5_A
          Length = 206

 Score = 26.4 bits (57), Expect = 3.0
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           Y E    ++ Y++K G  + I     
Sbjct: 165 YREQTAPLIEYYKKKGILRIIDASKP 190


>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
           conformational changes, transferase; 2.10A {Homo
           sapiens} SCOP: c.37.1.1
          Length = 196

 Score = 26.5 bits (57), Expect = 3.1
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           Y +    I+  +++ GK K I    S
Sbjct: 155 YLQSTKPIIDLYEEMGKVKKIDASKS 180


>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel,
           hydrolase, plasmid, protease, secreted, thiol protease,
           virulence; 3.01A {Shigella flexneri}
          Length = 400

 Score = 26.2 bits (57), Expect = 3.7
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 53  ILSYFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKIQCQFLDSNK 112
            LS  + DG+F   + DG S  L            +   + S+      KIQ   L S +
Sbjct: 68  SLSQDKMDGEFAHANIDGISIRLC-----------LNKGICSVFYLDGDKIQSTQLSSKE 116

Query: 113 LNCLAKD--QKQFYLRRTHLTELPSSKPQDDVAEIPE 147
            N L      KQF L + H    P S         PE
Sbjct: 117 YNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPE 153


>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
           cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
          Length = 203

 Score = 26.1 bits (56), Expect = 3.8
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           + E    ++ YF+   K   +  D S
Sbjct: 162 FKETSMPVIEYFETKSKVVRVRCDRS 187


>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
           ATP-binding, cytoplasm, metal-binding, nucleotide
           biosynthesis, nucleotide-binding; HET: AP5; 1.58A
           {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
           2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
           1s3g_A*
          Length = 216

 Score = 26.3 bits (57), Expect = 3.8
 Identities = 2/26 (7%), Positives = 9/26 (34%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
             +    +L ++ + G    ++    
Sbjct: 175 NMKQTAPLLDFYDEKGYLVNVNGQQD 200


>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A
           {Saccharomyces cerevisiae}
          Length = 127

 Score = 26.3 bits (58), Expect = 3.8
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 84  INQDVEIKLTSLIRNTSGKIQCQFLDS 110
           +N  + +    +    +G   CQ +DS
Sbjct: 19  LNGLLNLNYKKIEECGTGAAYCQIMDS 45


>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase; HET: AP5;
           1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1
           PDB: 2aky_A* 3aky_A* 1dvr_A*
          Length = 220

 Score = 26.0 bits (56), Expect = 4.0
 Identities = 4/26 (15%), Positives = 10/26 (38%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           Y      I+ +++K G +  +     
Sbjct: 180 YHAQTEPIVDFYKKTGIWAGVDASQP 205


>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase
           inhibitors, nucleotide-binding, transferase; HET: AP5;
           1.60A {Cryptosporidium parvum iowa II}
          Length = 217

 Score = 26.0 bits (56), Expect = 4.4
 Identities = 2/26 (7%), Positives = 11/26 (42%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           + +    ++ +++  G  K ++    
Sbjct: 180 FHKQTAPLVKFYEDLGILKRVNAKLP 205


>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
           kinase); nucleoside monophosphate kinase, NMP kinase;
           HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
           c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
          Length = 194

 Score = 26.0 bits (56), Expect = 4.7
 Identities = 4/26 (15%), Positives = 10/26 (38%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           +      ++ ++ K  K K I  +  
Sbjct: 152 FNVQTKLVIDHYNKFDKVKIIPANRD 177


>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
           nucleotide-binding, transferase; HET: AP5; 2.00A
           {Marinibacillus marinus}
          Length = 216

 Score = 25.6 bits (55), Expect = 5.0
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
             +    +L ++ + G  K I     
Sbjct: 175 NMKQTQPLLDFYSQKGVLKDIDGQQD 200


>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein,
           structural genomics, PSI, protein structure initiative;
           NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
          Length = 120

 Score = 25.7 bits (56), Expect = 5.4
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 15  LVAAIAVVSCSALSVVVDSSELLPEPMDITGY--WEDDNGILSYFQKDGKFKTISTDGSS 72
           L+    V      S + +        +   GY  +ED   I   F+K G F    T  + 
Sbjct: 48  LLDTSGVAKVIEKSPIAEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 107

Query: 73  S 73
           +
Sbjct: 108 N 108


>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton,
           acetylation, cell cycle, cell division, cytoplasm,
           mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP:
           a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3gjo_A
           1yib_A 1yig_A
          Length = 268

 Score = 25.3 bits (55), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 84  INQDVEIKLTSLIRNTSGKIQCQFLDS 110
           IN+ +++ LT + +  SG   CQF+D 
Sbjct: 24  INESLQLNLTKIEQLCSGAAYCQFMDM 50


>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
           phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
           g.41.2.1 PDB: 2ak2_A 2c9y_A*
          Length = 233

 Score = 25.3 bits (54), Expect = 6.3
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 46  YWEDDNGILSYFQKDGKFKTISTDGS 71
           Y      ++ Y+ K G    I    +
Sbjct: 191 YHTQTTPLVEYYSKRGIHSAIDASQT 216


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
           termination, ATP-binding, cytoplasm, hydrolase,
           membrane; 2.80A {Schizosaccharomyces pombe}
          Length = 508

 Score = 25.1 bits (54), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 47  WEDDNGILSYFQK 59
           WE+ N I  YFQ+
Sbjct: 473 WEEMNAIQEYFQR 485


>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin
           homology domain, microtubule plus END, +TIP, protein
           binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A
           1ueg_A 3co1_A 1v5k_A
          Length = 123

 Score = 24.7 bits (54), Expect = 9.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 84  INQDVEIKLTSLIRNTSGKIQCQFLDS 110
           IN+ +++ LT + +  SG   CQF+D 
Sbjct: 14  INESLQLNLTKIEQLCSGAAYCQFMDM 40


>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3;
           CH domain, microtubule-binding, structural genomics,
           NPPSFA; NMR {Homo sapiens}
          Length = 159

 Score = 24.8 bits (54), Expect = 10.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 84  INQDVEIKLTSLIRNTSGKIQCQFLDS 110
           +N  + +  T + +  SG   CQF+D 
Sbjct: 31  VNDSLHLNYTKIEQLCSGAAYCQFMDM 57


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,308,720
Number of extensions: 52818
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 40
Length of query: 160
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 75
Effective length of database: 3,632,490
Effective search space: 272436750
Effective search space used: 272436750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)