RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str. psy62] (160 letters) >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189 Score = 27.5 bits (60), Expect = 0.59 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTS 100 Y +L Y++K G +T S ++ + + ++ KL + TS Sbjct: 138 YEAQTEPVLEYYRKKGVLETFSGTETNKIWP------HVYAFLQTKLPQRSQETS 186 >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182 Score = 27.2 bits (59), Expect = 0.68 Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 9/52 (17%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIR 97 + ++ ++++ G + I+ + K+ D+ L L R Sbjct: 140 NMKQMKPLVDFYEQKGYLRNINGEQDME---------KVFADIRELLGGLAR 182 >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 Score = 27.2 bits (59), Expect = 0.76 Identities = 7/26 (26%), Positives = 12/26 (46%) Query: 40 PMDITGYWEDDNGILSYFQKDGKFKT 65 PM ++GY + + KDG + Sbjct: 392 PMIMSGYVNNPEATNALIDKDGWLHS 417 >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194 Score = 26.9 bits (58), Expect = 0.83 Identities = 7/26 (26%), Positives = 12/26 (46%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71 Y + I+ +++ GK K I S Sbjct: 153 YLQSTKPIIDLYEEMGKVKKIDASKS 178 >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190 Score = 26.4 bits (57), Expect = 1.2 Identities = 5/26 (19%), Positives = 9/26 (34%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71 Y ++ Y+ K G I + Sbjct: 148 YHTQTTPLVEYYSKRGIHSAIDASQT 173 >d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]} Length = 122 Score = 26.2 bits (58), Expect = 1.3 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%) Query: 59 KDGKFKTISTDGSSSVLATGSYHVKINQDVEIK-LTSLIRN 98 D KFK+ T + G+Y I D E + L I Sbjct: 65 NDTKFKS--TKRGEVTVPVGTYSWTIQTDSETEALKKAILA 103 >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194 Score = 26.4 bits (57), Expect = 1.3 Identities = 5/26 (19%), Positives = 17/26 (65%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71 Y++ ++++++K G + ++ +GS Sbjct: 153 YYKATEPVIAFYEKRGIVRKVNAEGS 178 >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Score = 26.1 bits (56), Expect = 1.7 Identities = 6/26 (23%), Positives = 11/26 (42%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71 + E ++ YF+ K + D S Sbjct: 155 FKETSMPVIEYFETKSKVVRVRCDRS 180 >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180 Score = 26.1 bits (56), Expect = 1.8 Identities = 4/26 (15%), Positives = 10/26 (38%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71 Y I+ +++K G + + Sbjct: 140 YHAQTEPIVDFYKKTGIWAGVDASQP 165 >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 Score = 26.0 bits (56), Expect = 1.8 Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 1/27 (3%) Query: 34 SELLPEPMDITGYWEDDNGILSYFQKD 60 L + G WE + + ++F Sbjct: 17 LPGLFD-GGARGLWEREGEVWAFFPAP 42 >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194 Score = 25.7 bits (55), Expect = 2.2 Identities = 4/26 (15%), Positives = 10/26 (38%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71 + ++ ++ K K K I + Sbjct: 152 FNVQTKLVIDHYNKFDKVKIIPANRD 177 >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182 Score = 25.2 bits (54), Expect = 2.6 Identities = 2/26 (7%), Positives = 7/26 (26%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71 +L+++ I+ Sbjct: 140 NMNQTAPLLAFYDSKEVLVNINGQKD 165 >d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]} Length = 149 Score = 25.2 bits (54), Expect = 2.7 Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 5/37 (13%) Query: 43 ITGYWEDDNGILSYFQKDG-----KFKTISTDGSSSV 74 ++ + + +G T DG +V Sbjct: 112 VSNEFIKSGKGWYFMNTNGELADNPSFTKEPDGLITV 148 >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 Score = 25.2 bits (54), Expect = 2.8 Identities = 8/26 (30%), Positives = 12/26 (46%) Query: 40 PMDITGYWEDDNGILSYFQKDGKFKT 65 P GY+ ++ S DG F+T Sbjct: 384 PWITGGYYGNEEATRSALTPDGFFRT 409 >d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]} Length = 179 Score = 24.8 bits (54), Expect = 3.8 Identities = 7/23 (30%), Positives = 9/23 (39%) Query: 98 NTSGKIQCQFLDSNKLNCLAKDQ 120 N G I+C F + KD Sbjct: 46 NNGGVIECSFPYNKSELTGVKDL 68 >d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 174 Score = 24.8 bits (54), Expect = 3.9 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 12/66 (18%) Query: 48 EDDNGILSYF--------QKDGKFKTISTDGSSSVLATG----SYHVKINQDVEIKLTSL 95 E G L + + + + + + G +HV+I D + L Sbjct: 86 EGLKGRLRPYAVLNPGWVKIGLDMNNANVESAEIITFGGKEYRRFHVRIEFDRTAGVKEL 145 Query: 96 IRNTSG 101 G Sbjct: 146 HIGVVG 151 >d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Score = 24.7 bits (54), Expect = 4.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110 IN+ +++ LT + + SG CQF+D Sbjct: 12 INESLQLNLTKIEQLCSGAAYCQFMDM 38 >d2bjqa2 b.169.1.1 (A:5-174) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]} Length = 170 Score = 24.8 bits (54), Expect = 4.3 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 98 NTSGKIQCQFLDSNKLNCLAKD 119 N +G ++C F + A+D Sbjct: 46 NDNGNVECSFPYNKVELTGARD 67 >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Score = 24.4 bits (51), Expect = 4.8 Identities = 7/25 (28%), Positives = 10/25 (40%) Query: 115 CLAKDQKQFYLRRTHLTELPSSKPQ 139 CL + + L L+ LP P Sbjct: 35 CLDRQAHELELNNLGLSSLPELPPH 59 >d2grga1 d.110.10.1 (A:1-98) Uncharacterized protein YNR034W-A {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 98 Score = 24.5 bits (53), Expect = 5.0 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 15 LVAAIAVVSCSALSVVVDSSELLPEPMDITGY--WEDDNGILSYFQKDGKFKTISTDGSS 72 L+ V S + + + GY +ED I F+K G F T + Sbjct: 26 LLDTSGVAKVIEKSPIAEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 85 Query: 73 S 73 + Sbjct: 86 N 86 >d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR {Escherichia coli [TaxId: 562]} Length = 50 Score = 23.5 bits (51), Expect = 9.8 Identities = 8/21 (38%), Positives = 12/21 (57%) Query: 49 DDNGILSYFQKDGKFKTISTD 69 DD G++SY + G I+ D Sbjct: 22 DDTGLVSYHDQQGNAMQINRD 42 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.132 0.381 Gapped Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 567,488 Number of extensions: 23255 Number of successful extensions: 80 Number of sequences better than 10.0: 1 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 32 Length of query: 160 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 82 Effective length of database: 1,336,656 Effective search space: 109605792 Effective search space used: 109605792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.2 bits)