BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein
[Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 160

 Score =  329 bits (844), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MQARCFLSLSFLFPLVAAIAVVSCSALSVVVDSSELLPEPMDITGYWEDDNGILSYFQKD 60
           MQARCFLSLSFLFPLVAAIAVVSCSALSVVVDSSELLPEPMDITGYWEDDNGILSYFQKD
Sbjct: 1   MQARCFLSLSFLFPLVAAIAVVSCSALSVVVDSSELLPEPMDITGYWEDDNGILSYFQKD 60

Query: 61  GKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKIQCQFLDSNKLNCLAKDQ 120
           GKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKIQCQFLDSNKLNCLAKDQ
Sbjct: 61  GKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKIQCQFLDSNKLNCLAKDQ 120

Query: 121 KQFYLRRTHLTELPSSKPQDDVAEIPEDPTTPSTSIIFYK 160
           KQFYLRRTHLTELPSSKPQDDVAEIPEDPTTPSTSIIFYK
Sbjct: 121 KQFYLRRTHLTELPSSKPQDDVAEIPEDPTTPSTSIIFYK 160


>gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 207

 Score = 23.9 bits (50), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 24  CSALSVVVDSSELLPEPMDITGYWED 49
           C  +  V+DS+     P D  G W D
Sbjct: 105 CGGIQAVLDSNNSSTSPGDFIGKWMD 130


>gi|254781019|ref|YP_003065432.1| hydroxymethylglutaryl-coenzyme A synthase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 23.9 bits (50), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 23  SCSALSVVVDSSELLPEPMDITGYWEDD 50
            C A+++++ S   + E  DITG + +D
Sbjct: 154 GCGAVAILISSQTSILEIEDITGIYTND 181


>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 473

 Score = 23.5 bits (49), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 84  INQDVEIKLTSLIRNTSGKIQ 104
           I+ ++E +LTSLI + +GK+ 
Sbjct: 93  IHMNIEARLTSLIGSIAGKMH 113


>gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 382

 Score = 23.5 bits (49), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 67  STDGSSSVLATGSYHV 82
           STD   S+L+TG +HV
Sbjct: 276 STDRVYSILSTGGFHV 291


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,458
Number of Sequences: 1233
Number of extensions: 3743
Number of successful extensions: 8
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 328,796
effective HSP length: 67
effective length of query: 93
effective length of database: 246,185
effective search space: 22895205
effective search space used: 22895205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)