RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
         (343 letters)



>gnl|CDD|144384 pfam00762, Ferrochelatase, Ferrochelatase. 
          Length = 312

 Score =  378 bits (973), Expect = e-105
 Identities = 141/323 (43%), Positives = 192/323 (59%), Gaps = 12/323 (3%)

Query: 18  KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
           K  VLL+NLG P+  +   +R +LR FL D+RV+ELP   W   L G IL  RP K   A
Sbjct: 1   KTAVLLLNLGGPETPE--DVRPFLRNFLSDRRVIELPLQLW---LAGIILPERPKKSAEA 55

Query: 78  YAKIWNTAKNESILRTHTRDQATNLAKRL-ESISSIVVDWAMRYGKPSVKEIINNLREEG 136
           Y KI       S L   TR QA  L KRL E  + + V  AMRYG PS+++ +  L+ +G
Sbjct: 56  YRKI----GGGSPLNVITRAQAEALQKRLGERGADVKVYLAMRYGPPSIEDALEELKADG 111

Query: 137 CDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIRE 196
            DR+++ PLYPQYSA+TTG+  D++ + L   R +P +R +  YY+   YI ALA SIRE
Sbjct: 112 VDRIVVLPLYPQYSASTTGSYLDELARALKKGRPAPEVRVIRRYYDHPGYIEALADSIRE 171

Query: 197 HFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRF 256
               +   P+ LL S H +P  Y+ KGDPY   C +TARL+ E L   D  +++ FQSRF
Sbjct: 172 ALAKLGDDPDRLLFSAHGLPERYIKKGDPYPAQCEETARLVAERLGLSD--YRLAFQSRF 229

Query: 257 GRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFT 316
           G    LEP TD T+E+LA +G+K + ++  GF SD LET YE+  E +E+    GGE + 
Sbjct: 230 GPEPWLEPYTDDTLEELAKEGVKKVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYR 289

Query: 317 QVPCLNSSNLSIDLLEKITRREL 339
           ++PCLN S   I+ L  + R  L
Sbjct: 290 RIPCLNDSPAFIEALADLVREHL 312


>gnl|CDD|30624 COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme
           metabolism].
          Length = 320

 Score =  342 bits (879), Expect = 8e-95
 Identities = 134/328 (40%), Positives = 192/328 (58%), Gaps = 8/328 (2%)

Query: 14  VKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSK 73
           +K  K  VLL+NLG P+  +   +R YL+ FL D+RV+ELP   W P L G IL  R  K
Sbjct: 1   MKMKKTAVLLLNLGGPETLE--DVRPYLKNFLSDRRVIELPRPLWYP-LAGIILPLRLKK 57

Query: 74  IKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLR 133
           +   Y  I      +S L   TR QA  L +RL+      V  AMRYG P ++E +  L+
Sbjct: 58  VAKNYESIGG----KSPLNVITRAQAAALEERLDL-PDFKVYLAMRYGPPFIEEAVEELK 112

Query: 134 EEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQS 193
           ++G +R+++ PLYPQYS++TTG+  D++ + L  +R  P + T+P YY++  YI ALA S
Sbjct: 113 KDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS 172

Query: 194 IREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ 253
           IRE         ++LL S H +P  Y+ +GDPY   C +T RL+ E L  P++ + + FQ
Sbjct: 173 IREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQ 232

Query: 254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE 313
           SRFG    L+P TD  +E+L   G+K + ++  GF SD LET YEI HE +E+    GG+
Sbjct: 233 SRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGK 292

Query: 314 KFTQVPCLNSSNLSIDLLEKITRRELMG 341
           K+ ++PCLN S   ID L  + R  L  
Sbjct: 293 KYVRIPCLNDSPEFIDALADLVRELLNE 320


>gnl|CDD|48638 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain:
           Ferrochelatase (protoheme ferrolyase or HemH) is the
           terminal enzyme of the heme biosynthetic pathway. It
           catalyzes the insertion of ferrous iron into the
           protoporphyrin IX ring yielding protoheme. This enzyme
           is ubiquitous in nature and widely distributed in
           bacteria and eukaryotes. Recently, some archaeal members
           have been identified. The oligomeric state of these
           enzymes varies depending on the presence of a
           dimerization motif at the C-terminus..
          Length = 159

 Score =  171 bits (435), Expect = 2e-43
 Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 8/166 (4%)

Query: 19  IGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAY 78
             VLLVNLG P+  +   +R +L+ FL D+RV+ELP     PIL G IL  RP K+   Y
Sbjct: 1   TAVLLVNLGGPESLED--VRPFLKNFLSDRRVIELPRPLR-PILAGIILPRRPPKVAKNY 57

Query: 79  AKIWNTAKNESILRTHTRDQATNLAKRLESISS-IVVDWAMRYGKPSVKEIINNLREEGC 137
            KI       S L   TR QA  L K L+     + V  AMRYG PS++E +  L+ +G 
Sbjct: 58  KKIGG----GSPLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGV 113

Query: 138 DRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYED 183
           DR+++ PLYPQYSA+TTG+  D+V + L  +R +P LR +  +Y+ 
Sbjct: 114 DRIVVLPLYPQYSASTTGSYLDEVERALKKLRPAPELRVIRSFYDH 159


>gnl|CDD|73203 cd00419, Ferrochelatase_C, Ferrochelatase, C-terminal domain:
           Ferrochelatase (protoheme ferrolyase or HemH) is the
           terminal enzyme of the heme biosynthetic pathway. It
           catalyzes the insertion of ferrous iron into the
           protoporphyrin IX ring yielding protoheme. This enzyme
           is ubiquitous in nature and widely distributed in
           bacteria and eukaryotes. Recently, some archaeal members
           have been identified. The oligomeric state of these
           enzymes varies depending on the presence of a
           dimerization motif at the C-terminus..
          Length = 135

 Score =  161 bits (408), Expect = 3e-40
 Identities = 60/135 (44%), Positives = 84/135 (62%)

Query: 188 SALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDR 247
            ALA  IRE    +    + LL S H +PV  + KGDPY   C +TARL+ E L  P D 
Sbjct: 1   EALADHIREALAELPREKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDE 60

Query: 248 FKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIF 307
           +++ +QSRFG  + LEP TD  +E+LA +G+K++ ++  GF SD LET YE+  E +E+ 
Sbjct: 61  YELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELA 120

Query: 308 VNGGGEKFTQVPCLN 322
              GGE + +VPCLN
Sbjct: 121 EEAGGENYRRVPCLN 135



 Score = 28.6 bits (64), Expect = 2.5
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 94  HTRDQATNLAKRLESISS-IVVDWAMRYG-----KPSVKEIINNLREEGCDRLLIFP 144
              + A  +A+RL        + +  R+G     +PS  + +  L +EG   +++ P
Sbjct: 42  QCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVP 98


>gnl|CDD|36535 KOG1321, KOG1321, KOG1321, Protoheme ferro-lyase (ferrochelatase)
           [Coenzyme transport and metabolism].
          Length = 395

 Score =  149 bits (377), Expect = 1e-36
 Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 33/340 (9%)

Query: 9   RNHPKVKFGKIGVLLVNLGTP----DGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFG 64
            +    K  K G+LL+N+G P    D  DF      L     D  ++ LP++  +  L  
Sbjct: 29  SSSVAQKKPKTGILLLNMGGPETLDDVQDF------LYRLFADPDIIPLPAFLQKT-LAK 81

Query: 65  YILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDW----AMRY 120
           +I   R  K++  Y +I       S +R  T  QA  + K L+               RY
Sbjct: 82  FIAKRRTPKVQEQYREI----GGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRY 137

Query: 121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIH------MRWSPSL 174
             P  +E +  ++++G  R + F  YPQYS +T+G++ ++++++         ++WS   
Sbjct: 138 AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDIKWS--- 194

Query: 175 RTVPPYYEDSDYISALAQSIRE---HFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCH 231
             +  +      I A A++I +    F        ++L S H +P+S +  GDPY     
Sbjct: 195 -IIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVNAGDPYPAEIA 253

Query: 232 KTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSD 291
            T  L+ E L + +  +++ +QS+ G +  L P TD+ +E L   G+K+L ++   F S+
Sbjct: 254 ATVDLIMEELKYKNP-YRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSE 312

Query: 292 CLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLL 331
            +ET +EI  E  E  +  G E + +V  LN +   I+ L
Sbjct: 313 HIETLHEIDIEYIEEALKKGVENWKRVESLNGNPTFIEGL 352


>gnl|CDD|48637 cd03409, Chelatase_Class_II, Class II Chelatase: a family of
           ATP-independent monomeric or homodimeric enzymes that
           catalyze the insertion of metal into protoporphyrin
           rings. This family includes protoporphyrin IX
           ferrochelatase (HemH), sirohydrochlorin ferrochelatase
           (SirB) and the cobaltochelatases, CbiK and CbiX. HemH
           and SirB are involved in heme and siroheme biosynthesis,
           respectively, while the cobaltochelatases are associated
           with cobalamin biosynthesis. Excluded from this family
           are the ATP-dependent heterotrimeric chelatases (class
           I) and the multifunctional homodimeric enzymes with
           dehydrogenase and chelatase activities (class III)..
          Length = 101

 Score = 34.5 bits (79), Expect = 0.039
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 94  HTRDQATNLAKRL-ESISSIVVDWAMRYG-KPSVKEIINNLREEGCDRLLIFPLYPQY 149
             +      A  L ES+         + G  P  +E I  L EEG  R++I PL P  
Sbjct: 14  PYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVS 71


>gnl|CDD|32321 COG2138, COG2138, Uncharacterized conserved protein [Function
           unknown].
          Length = 245

 Score = 33.9 bits (77), Expect = 0.074
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 94  HTRDQATNLAKRL-ESISSIVVDWA-MRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSA 151
             R+ A  +A RL E      V  A +   +PS++E +  L   G DR+++ PL+     
Sbjct: 16  RGREVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLF----L 71

Query: 152 ATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVS 211
           A     +  +  EL   R +     + P       +  L Q + +         E +++ 
Sbjct: 72  AAGYHTKRDIPAELGLARQAHPQVDLSPLGTHPAVLDLLGQRLEDAGADEADDAERVVLE 131


>gnl|CDD|110864 pfam01903, CbiX, CbiX.  The function of CbiX is uncertain, however
           it is found in cobalamin biosynthesis operons and so may
           have a related function. Some CbiX proteins contain a
           striking histidine-rich region at their C-terminus,
           which suggests that it might be involved in metal
           chelation.
          Length = 106

 Score = 31.5 bits (72), Expect = 0.34
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 122 KPSVKEIINNLREEGCDRLLIFPL 145
           +PS+ E +  L  +G  R+++ PL
Sbjct: 37  EPSLPEALRELVAQGARRIVVVPL 60


>gnl|CDD|48643 cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and
           sirohydrochlorin iron chelatase (SirB), N-terminal
           domain. SirB catalyzes the ferro-chelation of
           sirohydrochlorin to siroheme, the prosthetic group of
           sulfite and nitrite reductases. CbiX is a
           cobaltochelatase, responsible for the chelation of Co2+
           into sirohydrochlorin, an important step in the vitamin
           B12 biosynthetic pathway. CbiX often contains a
           C-terminal histidine-rich region that may be important
           for metal delivery and/or storage, and may also contain
           an iron-sulfur center. Both are found in a wide range of
           bacteria. This subgroup also contains single domain
           proteins from archaea and bacteria which may represent
           the ancestral form of class II chelatases before domain
           duplication occurred..
          Length = 101

 Score = 31.4 bits (71), Expect = 0.41
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 90  ILRTH-TRDQATN-----LAKRL-ESISSIVVDWA-MRYGKPSVKEIINNLREEGCDRLL 141
           +L  H +RD         LA+RL E +    V+ A +   +PS+ E ++ L  +G  R++
Sbjct: 3   LLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIV 62

Query: 142 IFPL 145
           + PL
Sbjct: 63  VVPL 66


>gnl|CDD|144444 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones can
           be reversibly acetylated on several lysine residues.
           Regulation of transcription is caused in part by this
           mechanism. Histone deacetylases catalyse the removal of
           the acetyl group. Histone deacetylases are related to
           other proteins.
          Length = 302

 Score = 30.3 bits (69), Expect = 0.87
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 20/73 (27%)

Query: 178 PPYYEDSDYISALAQSIREHFESIQWTPEMLLVSF----HQMPVSYLLKGDPYGCHCHKT 233
           PP   D +Y++A  + +       Q  P+++LVS     H         GDP G     T
Sbjct: 207 PPGTGDEEYLAAFEEILLPLLREFQ--PDLILVSAGFDAH--------AGDPLGGLNLTT 256

Query: 234 A------RLLKEF 240
                  RLL E 
Sbjct: 257 EGYAERTRLLLEL 269


>gnl|CDD|30934 COG0589, UspA, Universal stress protein UspA and related
           nucleotide-binding proteins [Signal transduction
           mechanisms].
          Length = 154

 Score = 29.2 bits (64), Expect = 1.8
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 48  KRVVELPSWQWRPILFGYIL-NFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRL 106
           +  V L      P++   ++    P+ +            +E  L     +         
Sbjct: 24  EEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83

Query: 107 ESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLI 142
           E+    VV+  +  G PS +EI+    EE  D +++
Sbjct: 84  EAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVV 119


>gnl|CDD|34759 COG5158, SEC1, Proteins involved in synaptic transmission and
           general secretion, Sec1 family [Intracellular
           trafficking and secretion].
          Length = 582

 Score = 28.8 bits (64), Expect = 2.1
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 107 ESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI 166
           E IS +   + +R  K ++  I+ +L +         P Y  Y  +   T  + + + L 
Sbjct: 63  EPISDLPAIYFVRPTKENIDLILEDLEQWD-------PFYLNYHISFLNTVTESLLELLA 115

Query: 167 HMRWSPSLRTVPPYYED-----SDYISALAQSIREHFESIQWTPEMLL 209
                  + +V   Y D     SD  S           S+  T E L+
Sbjct: 116 ESGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLES-SLPSTTEALI 162


>gnl|CDD|37862 KOG2651, KOG2651, KOG2651, rRNA adenine N-6-methyltransferase [RNA
           processing and modification].
          Length = 476

 Score = 28.0 bits (62), Expect = 3.8
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 19/112 (16%)

Query: 21  VLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWR----PILFGYILNFRPSKIKH 76
           +  +  G P   D    R  L+ FLL  +         R         ++ N   S    
Sbjct: 64  LATMPSGMPGEGDVVRYRAVLKLFLLALKSTACALAFTRMQGIQTPSEFLENPSQS---- 119

Query: 77  AYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEI 128
                   ++  ++ R H R +  +  +RL  + S + D+    G   V ++
Sbjct: 120 --------SQLTALFRKHVRPKKQHEIRRLSELVSSISDF---TGIDQVVDV 160


>gnl|CDD|36142 KOG0924, KOG0924, KOG0924, mRNA splicing factor ATP-dependent RNA
           helicase [RNA processing and modification].
          Length = 1042

 Score = 27.7 bits (61), Expect = 5.3
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 124 SVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQEL 165
            +KE +  L       L + P+Y Q  A      Q K+FQ+ 
Sbjct: 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADL----QAKIFQKA 619


>gnl|CDD|38639 KOG3429, KOG3429, KOG3429, Predicted peptidyl-tRNA hydrolase
           [Translation, ribosomal structure and biogenesis].
          Length = 172

 Score = 26.9 bits (59), Expect = 8.1
 Identities = 14/62 (22%), Positives = 20/62 (32%)

Query: 73  KIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNL 132
           K+        N      I    TR Q  N+A  LE +  I+            +E I  +
Sbjct: 83  KLLTTEKNRINKDGELVIYSDKTRSQHKNIADCLEKLRDIIRAAEQTPPVDPTEETIKKI 142

Query: 133 RE 134
           R 
Sbjct: 143 RI 144


>gnl|CDD|38895 KOG3691, KOG3691, KOG3691, Exocyst complex subunit Sec8
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 982

 Score = 26.9 bits (59), Expect = 9.5
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 2/113 (1%)

Query: 232 KTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT-PGFSS 290
            +  LL    +   D   IC  +  G ++ +     K       D   S  +   P + +
Sbjct: 605 LSDYLLNMVCNHLSDYLDICRAALRGIVQHVSEVKRKISVAWLKDDDISRQLKKLPNWKN 664

Query: 291 DCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI 343
             LE   E+  E +E F+  G     +   L  SNL  D    I+  +++  +
Sbjct: 665 PSLEGQNELCREEEESFLQAGDRNIKESELLI-SNLGTDSQLSISVSDILNDM 716


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,432,055
Number of extensions: 238390
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 22
Length of query: 343
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 248
Effective length of database: 4,210,882
Effective search space: 1044298736
Effective search space used: 1044298736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)