RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >gnl|CDD|144384 pfam00762, Ferrochelatase, Ferrochelatase. Length = 312 Score = 378 bits (973), Expect = e-105 Identities = 141/323 (43%), Positives = 192/323 (59%), Gaps = 12/323 (3%) Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77 K VLL+NLG P+ + +R +LR FL D+RV+ELP W L G IL RP K A Sbjct: 1 KTAVLLLNLGGPETPE--DVRPFLRNFLSDRRVIELPLQLW---LAGIILPERPKKSAEA 55 Query: 78 YAKIWNTAKNESILRTHTRDQATNLAKRL-ESISSIVVDWAMRYGKPSVKEIINNLREEG 136 Y KI S L TR QA L KRL E + + V AMRYG PS+++ + L+ +G Sbjct: 56 YRKI----GGGSPLNVITRAQAEALQKRLGERGADVKVYLAMRYGPPSIEDALEELKADG 111 Query: 137 CDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIRE 196 DR+++ PLYPQYSA+TTG+ D++ + L R +P +R + YY+ YI ALA SIRE Sbjct: 112 VDRIVVLPLYPQYSASTTGSYLDELARALKKGRPAPEVRVIRRYYDHPGYIEALADSIRE 171 Query: 197 HFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRF 256 + P+ LL S H +P Y+ KGDPY C +TARL+ E L D +++ FQSRF Sbjct: 172 ALAKLGDDPDRLLFSAHGLPERYIKKGDPYPAQCEETARLVAERLGLSD--YRLAFQSRF 229 Query: 257 GRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFT 316 G LEP TD T+E+LA +G+K + ++ GF SD LET YE+ E +E+ GGE + Sbjct: 230 GPEPWLEPYTDDTLEELAKEGVKKVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYR 289 Query: 317 QVPCLNSSNLSIDLLEKITRREL 339 ++PCLN S I+ L + R L Sbjct: 290 RIPCLNDSPAFIEALADLVREHL 312 >gnl|CDD|30624 COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]. Length = 320 Score = 342 bits (879), Expect = 8e-95 Identities = 134/328 (40%), Positives = 192/328 (58%), Gaps = 8/328 (2%) Query: 14 VKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSK 73 +K K VLL+NLG P+ + +R YL+ FL D+RV+ELP W P L G IL R K Sbjct: 1 MKMKKTAVLLLNLGGPETLE--DVRPYLKNFLSDRRVIELPRPLWYP-LAGIILPLRLKK 57 Query: 74 IKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLR 133 + Y I +S L TR QA L +RL+ V AMRYG P ++E + L+ Sbjct: 58 VAKNYESIGG----KSPLNVITRAQAAALEERLDL-PDFKVYLAMRYGPPFIEEAVEELK 112 Query: 134 EEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQS 193 ++G +R+++ PLYPQYS++TTG+ D++ + L +R P + T+P YY++ YI ALA S Sbjct: 113 KDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS 172 Query: 194 IREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ 253 IRE ++LL S H +P Y+ +GDPY C +T RL+ E L P++ + + FQ Sbjct: 173 IREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQ 232 Query: 254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE 313 SRFG L+P TD +E+L G+K + ++ GF SD LET YEI HE +E+ GG+ Sbjct: 233 SRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGK 292 Query: 314 KFTQVPCLNSSNLSIDLLEKITRRELMG 341 K+ ++PCLN S ID L + R L Sbjct: 293 KYVRIPCLNDSPEFIDALADLVRELLNE 320 >gnl|CDD|48638 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.. Length = 159 Score = 171 bits (435), Expect = 2e-43 Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 8/166 (4%) Query: 19 IGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAY 78 VLLVNLG P+ + +R +L+ FL D+RV+ELP PIL G IL RP K+ Y Sbjct: 1 TAVLLVNLGGPESLED--VRPFLKNFLSDRRVIELPRPLR-PILAGIILPRRPPKVAKNY 57 Query: 79 AKIWNTAKNESILRTHTRDQATNLAKRLESISS-IVVDWAMRYGKPSVKEIINNLREEGC 137 KI S L TR QA L K L+ + V AMRYG PS++E + L+ +G Sbjct: 58 KKIGG----GSPLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGV 113 Query: 138 DRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYED 183 DR+++ PLYPQYSA+TTG+ D+V + L +R +P LR + +Y+ Sbjct: 114 DRIVVLPLYPQYSASTTGSYLDEVERALKKLRPAPELRVIRSFYDH 159 >gnl|CDD|73203 cd00419, Ferrochelatase_C, Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.. Length = 135 Score = 161 bits (408), Expect = 3e-40 Identities = 60/135 (44%), Positives = 84/135 (62%) Query: 188 SALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDR 247 ALA IRE + + LL S H +PV + KGDPY C +TARL+ E L P D Sbjct: 1 EALADHIREALAELPREKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDE 60 Query: 248 FKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIF 307 +++ +QSRFG + LEP TD +E+LA +G+K++ ++ GF SD LET YE+ E +E+ Sbjct: 61 YELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELA 120 Query: 308 VNGGGEKFTQVPCLN 322 GGE + +VPCLN Sbjct: 121 EEAGGENYRRVPCLN 135 Score = 28.6 bits (64), Expect = 2.5 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 94 HTRDQATNLAKRLESISS-IVVDWAMRYG-----KPSVKEIINNLREEGCDRLLIFP 144 + A +A+RL + + R+G +PS + + L +EG +++ P Sbjct: 42 QCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVP 98 >gnl|CDD|36535 KOG1321, KOG1321, KOG1321, Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]. Length = 395 Score = 149 bits (377), Expect = 1e-36 Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 33/340 (9%) Query: 9 RNHPKVKFGKIGVLLVNLGTP----DGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFG 64 + K K G+LL+N+G P D DF L D ++ LP++ + L Sbjct: 29 SSSVAQKKPKTGILLLNMGGPETLDDVQDF------LYRLFADPDIIPLPAFLQKT-LAK 81 Query: 65 YILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDW----AMRY 120 +I R K++ Y +I S +R T QA + K L+ RY Sbjct: 82 FIAKRRTPKVQEQYREI----GGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRY 137 Query: 121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIH------MRWSPSL 174 P +E + ++++G R + F YPQYS +T+G++ ++++++ ++WS Sbjct: 138 AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDIKWS--- 194 Query: 175 RTVPPYYEDSDYISALAQSIRE---HFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCH 231 + + I A A++I + F ++L S H +P+S + GDPY Sbjct: 195 -IIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVNAGDPYPAEIA 253 Query: 232 KTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSD 291 T L+ E L + + +++ +QS+ G + L P TD+ +E L G+K+L ++ F S+ Sbjct: 254 ATVDLIMEELKYKNP-YRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSE 312 Query: 292 CLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLL 331 +ET +EI E E + G E + +V LN + I+ L Sbjct: 313 HIETLHEIDIEYIEEALKKGVENWKRVESLNGNPTFIEGL 352 >gnl|CDD|48637 cd03409, Chelatase_Class_II, Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).. Length = 101 Score = 34.5 bits (79), Expect = 0.039 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 94 HTRDQATNLAKRL-ESISSIVVDWAMRYG-KPSVKEIINNLREEGCDRLLIFPLYPQY 149 + A L ES+ + G P +E I L EEG R++I PL P Sbjct: 14 PYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVS 71 >gnl|CDD|32321 COG2138, COG2138, Uncharacterized conserved protein [Function unknown]. Length = 245 Score = 33.9 bits (77), Expect = 0.074 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 94 HTRDQATNLAKRL-ESISSIVVDWA-MRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSA 151 R+ A +A RL E V A + +PS++E + L G DR+++ PL+ Sbjct: 16 RGREVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLF----L 71 Query: 152 ATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVS 211 A + + EL R + + P + L Q + + E +++ Sbjct: 72 AAGYHTKRDIPAELGLARQAHPQVDLSPLGTHPAVLDLLGQRLEDAGADEADDAERVVLE 131 >gnl|CDD|110864 pfam01903, CbiX, CbiX. The function of CbiX is uncertain, however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus, which suggests that it might be involved in metal chelation. Length = 106 Score = 31.5 bits (72), Expect = 0.34 Identities = 8/24 (33%), Positives = 15/24 (62%) Query: 122 KPSVKEIINNLREEGCDRLLIFPL 145 +PS+ E + L +G R+++ PL Sbjct: 37 EPSLPEALRELVAQGARRIVVVPL 60 >gnl|CDD|48643 cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.. Length = 101 Score = 31.4 bits (71), Expect = 0.41 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%) Query: 90 ILRTH-TRDQATN-----LAKRL-ESISSIVVDWA-MRYGKPSVKEIINNLREEGCDRLL 141 +L H +RD LA+RL E + V+ A + +PS+ E ++ L +G R++ Sbjct: 3 LLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIV 62 Query: 142 IFPL 145 + PL Sbjct: 63 VVPL 66 >gnl|CDD|144444 pfam00850, Hist_deacetyl, Histone deacetylase domain. Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins. Length = 302 Score = 30.3 bits (69), Expect = 0.87 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 20/73 (27%) Query: 178 PPYYEDSDYISALAQSIREHFESIQWTPEMLLVSF----HQMPVSYLLKGDPYGCHCHKT 233 PP D +Y++A + + Q P+++LVS H GDP G T Sbjct: 207 PPGTGDEEYLAAFEEILLPLLREFQ--PDLILVSAGFDAH--------AGDPLGGLNLTT 256 Query: 234 A------RLLKEF 240 RLL E Sbjct: 257 EGYAERTRLLLEL 269 >gnl|CDD|30934 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]. Length = 154 Score = 29.2 bits (64), Expect = 1.8 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 48 KRVVELPSWQWRPILFGYIL-NFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRL 106 + V L P++ ++ P+ + +E L + Sbjct: 24 EEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 Query: 107 ESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLI 142 E+ VV+ + G PS +EI+ EE D +++ Sbjct: 84 EAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVV 119 >gnl|CDD|34759 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]. Length = 582 Score = 28.8 bits (64), Expect = 2.1 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 13/108 (12%) Query: 107 ESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI 166 E IS + + +R K ++ I+ +L + P Y Y + T + + + L Sbjct: 63 EPISDLPAIYFVRPTKENIDLILEDLEQWD-------PFYLNYHISFLNTVTESLLELLA 115 Query: 167 HMRWSPSLRTVPPYYED-----SDYISALAQSIREHFESIQWTPEMLL 209 + +V Y D SD S S+ T E L+ Sbjct: 116 ESGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLES-SLPSTTEALI 162 >gnl|CDD|37862 KOG2651, KOG2651, KOG2651, rRNA adenine N-6-methyltransferase [RNA processing and modification]. Length = 476 Score = 28.0 bits (62), Expect = 3.8 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 19/112 (16%) Query: 21 VLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWR----PILFGYILNFRPSKIKH 76 + + G P D R L+ FLL + R ++ N S Sbjct: 64 LATMPSGMPGEGDVVRYRAVLKLFLLALKSTACALAFTRMQGIQTPSEFLENPSQS---- 119 Query: 77 AYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEI 128 ++ ++ R H R + + +RL + S + D+ G V ++ Sbjct: 120 --------SQLTALFRKHVRPKKQHEIRRLSELVSSISDF---TGIDQVVDV 160 >gnl|CDD|36142 KOG0924, KOG0924, KOG0924, mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]. Length = 1042 Score = 27.7 bits (61), Expect = 5.3 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Query: 124 SVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQEL 165 +KE + L L + P+Y Q A Q K+FQ+ Sbjct: 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADL----QAKIFQKA 619 >gnl|CDD|38639 KOG3429, KOG3429, KOG3429, Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]. Length = 172 Score = 26.9 bits (59), Expect = 8.1 Identities = 14/62 (22%), Positives = 20/62 (32%) Query: 73 KIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNL 132 K+ N I TR Q N+A LE + I+ +E I + Sbjct: 83 KLLTTEKNRINKDGELVIYSDKTRSQHKNIADCLEKLRDIIRAAEQTPPVDPTEETIKKI 142 Query: 133 RE 134 R Sbjct: 143 RI 144 >gnl|CDD|38895 KOG3691, KOG3691, KOG3691, Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]. Length = 982 Score = 26.9 bits (59), Expect = 9.5 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Query: 232 KTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT-PGFSS 290 + LL + D IC + G ++ + K D S + P + + Sbjct: 605 LSDYLLNMVCNHLSDYLDICRAALRGIVQHVSEVKRKISVAWLKDDDISRQLKKLPNWKN 664 Query: 291 DCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI 343 LE E+ E +E F+ G + L SNL D I+ +++ + Sbjct: 665 PSLEGQNELCREEEESFLQAGDRNIKESELLI-SNLGTDSQLSISVSDILNDM 716 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.138 0.432 Gapped Lambda K H 0.267 0.0697 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,432,055 Number of extensions: 238390 Number of successful extensions: 608 Number of sequences better than 10.0: 1 Number of HSP's gapped: 590 Number of HSP's successfully gapped: 22 Length of query: 343 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 248 Effective length of database: 4,210,882 Effective search space: 1044298736 Effective search space used: 1044298736 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.2 bits)