RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
(343 letters)
>gnl|CDD|178811 PRK00035, hemH, ferrochelatase; Reviewed.
Length = 333
Score = 406 bits (1046), Expect = e-114
Identities = 137/330 (41%), Positives = 189/330 (57%), Gaps = 9/330 (2%)
Query: 17 GKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKH 76
K VLL+NLG P+ + +R +L+ FL D+RV++LP W+P+L G IL R K+
Sbjct: 4 PKDAVLLLNLGGPETPE--DVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAK 61
Query: 77 AYAKIWNTAKNESILRTHTRDQATNLAKRLESIS-SIVVDWAMRYGKPSVKEIINNLREE 135
YA I S L TR QA L L + + V MRY PS++E + L+ +
Sbjct: 62 HYASIGG----GSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKAD 117
Query: 136 GCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIR 195
G DR+++ PLYPQYS +TT + + + + L +R P +R + YY+ YI ALA+SIR
Sbjct: 118 GVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIR 177
Query: 196 EHFES--IQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ 253
E P+ LL S H +P Y+ KGDPY C +TARLL E L PD+ + + +Q
Sbjct: 178 EALAKHGEDPEPDRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQ 237
Query: 254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE 313
SRFG LEP TD T+E+LA G+K + ++ PGF SD LET EI E +EI GGE
Sbjct: 238 SRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGE 297
Query: 314 KFTQVPCLNSSNLSIDLLEKITRRELMGWI 343
+F ++PCLN S I+ L + R L GW
Sbjct: 298 EFRRIPCLNDSPEFIEALADLVRENLQGWP 327
>gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase.
Length = 485
Score = 295 bits (758), Expect = 7e-81
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 21/332 (6%)
Query: 10 NHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPS--WQWRPILFGYIL 67
+HPKV K+GVLL+NLG P+ D ++ +L D ++ LP + L +I
Sbjct: 81 DHPKVSEEKVGVLLLNLGGPETLD--DVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFIS 138
Query: 68 NFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESIS-SIVVDWAMRYGKPSVK 126
N R K K YA I S LR T +QA LAK LE+ + V MRY P +
Sbjct: 139 NLRAPKSKEGYASI----GGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTE 194
Query: 127 EIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSL-----RTVPPYY 181
E I+ ++ +G +L++ PLYPQ+S +T+G++ ++ + + R L +P +Y
Sbjct: 195 EAIDQIKADGITKLVVLPLYPQFSISTSGSSL-RLLESI--FREDEYLVNMQHTVIPSWY 251
Query: 182 EDSDYISALAQSIREHFESI-QWTPEMLLVSFHQMPVSYLL-KGDPYGCHCHKTARLLKE 239
+ Y+ A+A I++ + S H +PVSY+ GDPY + L+ E
Sbjct: 252 QREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIME 311
Query: 240 FLSW--PDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSY 297
L +R + +QSR G ++ L+P TD+T+ +L G+KSL + F S+ +ET
Sbjct: 312 ELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLE 371
Query: 298 EIAHEAKEIFVNGGGEKFTQVPCLNSSNLSID 329
EI E +E+ + G E + +VP L I
Sbjct: 372 EIDMEYRELALESGIENWGRVPALGCEPTFIS 403
>gnl|CDD|161712 TIGR00109, hemH, ferrochelatase. Human ferrochelatase, found at
the mitochondrial inner membrane inner surface, was
shown in an active recombinant form to be a homodimer.
This contrasts to an earlier finding by gel filtration
that overexpressed E. coli ferrochelatase runs as a
monomer.
Length = 322
Score = 251 bits (644), Expect = 1e-67
Identities = 113/319 (35%), Positives = 181/319 (56%), Gaps = 9/319 (2%)
Query: 15 KFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKI 74
K K GVLL+NLG PD + + R+L++ D R++++ +WR L IL R KI
Sbjct: 2 KRKKTGVLLMNLGGPDKLE--EVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKI 59
Query: 75 KHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLRE 134
Y I S L T QA L KRL + V AMRYG+P +E + L +
Sbjct: 60 AKNYEAIGGG----SPLLQITEQQAHALEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLK 115
Query: 135 EGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR-WSPSLRTVPPYYEDSDYISALAQS 193
+G +R ++ PLYP +S++TTG++ +++ + L +R P++ + +Y++ YI ALA S
Sbjct: 116 DGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADS 175
Query: 194 IREHFESI-QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF 252
I+E S + +LL S H +P SY+ +GDPY C T RL+ E L +P+ +++ +
Sbjct: 176 IKETLASFPEPDNAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPN-EYRLTW 234
Query: 253 QSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGG 312
QSR G L P T++ +EKL G++ + ++ GF++D LET YEI E +E+ + GG
Sbjct: 235 QSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGG 294
Query: 313 EKFTQVPCLNSSNLSIDLL 331
+K+ + P LN+ I+ +
Sbjct: 295 DKYQRCPALNAKPEFIEAM 313
>gnl|CDD|183526 PRK12435, PRK12435, ferrochelatase; Provisional.
Length = 311
Score = 45.0 bits (107), Expect = 3e-05
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 95 TRDQATNLAKRLESISSIVVDWAMRYG----KPSVKEIINNLREEGCDRLLIFPLYPQYS 150
T +QA L K L + V++ + G +P +++ + + +G + + L P YS
Sbjct: 59 TDEQAKALEKALNEVQD-EVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYS 117
Query: 151 AATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPE---- 206
+ + +K +E P++ ++ +Y++ +I A I+E F I PE
Sbjct: 118 TFSVK-SYNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQI---PEEERE 173
Query: 207 --MLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKE 239
+L+VS H +P + GDPY +TA L+ E
Sbjct: 174 KAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAE 208
>gnl|CDD|148850 pfam07477, Glyco_hydro_67C, Glycosyl hydrolase family 67
C-terminus. Alpha-glucuronidases, components of an
ensemble of enzymes central to the recycling of
photosynthetic biomass, remove the alpha-1,2 linked
4-O-methyl glucuronic acid from xylans. This family
represents the C terminal region of alpha-glucuronidase
which is mainly alpha-helical. It wraps around the
catalytic domain (pfam07488), making additional
interactions both with the N-terminal domain (pfam03648)
of its parent monomer and also forming the majority of
the dimer-surface with the equivalent C-terminal domain
of the other monomer of the dimer.
Length = 225
Score = 33.7 bits (78), Expect = 0.077
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 184 SDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLK 222
+ Y A + + +E ++ P+ LL+ FH +P ++ LK
Sbjct: 108 TGYTGQYAPEVAKMYEDLETCPDELLLWFHHVPYTHRLK 146
>gnl|CDD|180008 PRK05312, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 29.1 bits (66), Expect = 1.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 143 FPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVP 178
FP + ++ A G A K Q + M P LR VP
Sbjct: 135 FPGHTEFLAELAGVATGKPVQP-VMMLAGPQLRVVP 169
>gnl|CDD|179168 PRK00923, PRK00923, sirohydrochlorin cobaltochelatase; Reviewed.
Length = 126
Score = 27.9 bits (63), Expect = 3.7
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 118 MRYGKPSVKEIINNLREEGCDRLLIFPLY 146
M + +P++ E + L G D++++ P++
Sbjct: 41 MEFNEPTIPEALKKLIGTGADKIIVVPVF 69
>gnl|CDD|165198 PHA02864, PHA02864, hypothetical protein; Provisional.
Length = 240
Score = 27.5 bits (61), Expect = 4.8
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 90 ILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREE--GCDRLLIF 143
I+R + + + + K+ SI + D++ +P++KE+I LREE GCD L +
Sbjct: 19 IIRKYIKKLSKDEFKQFCSIFMVNADFSFYDKRPNLKEVIKILREEFYGCDLRLFY 74
>gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 27.6 bits (62), Expect = 5.4
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 59 RPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAM 118
R LF +L F I ++ + ++ L KRL I V
Sbjct: 284 RVKLFRELLGFEVGSPVFYLRNIVDSYIVDEDSV----EKLVELVKRLGDGGLIFV--PS 337
Query: 119 RYGKPSVKEIINNLREEG 136
GK +E+ L + G
Sbjct: 338 DKGKEYAEELAEYLEDLG 355
>gnl|CDD|185173 PRK15266, PRK15266, subtilase cytotoxin subunit B; Provisional.
Length = 135
Score = 27.2 bits (60), Expect = 6.7
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 170 WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSF 212
W+PS + + + + Y + QS+R H + WT + + +F
Sbjct: 76 WAPSFKEL---LDQARYFYSTGQSVRIHVQKNIWTYPLFVNTF 115
>gnl|CDD|185500 PTZ00175, PTZ00175, diphthine synthase; Provisional.
Length = 270
Score = 27.2 bits (61), Expect = 6.8
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 106 LESISSIVVDWAMR-----YGKPSVKEIINNLREEGCDRLL 141
LES +SI+++ YGKP V E + EEGCD +L
Sbjct: 32 LESYTSILINSNKEKLEEFYGKP-VIEADREMVEEGCDEIL 71
>gnl|CDD|151380 pfam10933, DUF2827, Protein of unknown function (DUF2827). This is
a family of uncharacterized proteins found in
Burkholderia.
Length = 364
Score = 27.0 bits (60), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 165 LIHMRWSPSLRTVPPYYEDSDYIS---ALAQSIREH 197
L+H SP L YY D D + AL ++ R H
Sbjct: 297 LVHN--SPLLGDAGYYYPDFDIQAGARALLRAFRHH 330
>gnl|CDD|183013 PRK11173, PRK11173, two-component response regulator; Provisional.
Length = 237
Score = 26.9 bits (60), Expect = 7.3
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 194 IREHFESIQWTPEMLLVSFH 213
IR+HFES TPE ++ + H
Sbjct: 208 IRKHFESTPDTPE-IIATIH 226
>gnl|CDD|183187 PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.
Length = 156
Score = 26.9 bits (60), Expect = 8.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 206 EMLLVSFHQMPVSYLLK 222
EM +++ H MP++YL+
Sbjct: 83 EMFMMTTHNMPLNYLID 99
>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 26.6 bits (59), Expect = 9.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 87 NESIL----RTHTRDQATNLAKRLESISSIVVDWAMRYGKP-----SVKEIINNLREEGC 137
++ +L R HT + ++L I V + G P +E + L+E G
Sbjct: 122 SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGP 181
Query: 138 DRLLIFPLYPQ 148
DR+ IFPL P+
Sbjct: 182 DRVSIFPLSPR 192
>gnl|CDD|180639 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 26.6 bits (60), Expect = 9.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 276 DGIKSLAIITPGFSSDCLE-----TSYEIAHE 302
DG+ + TP +S LE T +A +
Sbjct: 204 DGV----LYTPPLTSSILEGITRDTVITLAKD 231
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.138 0.432
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,768,528
Number of extensions: 369907
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 25
Length of query: 343
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 249
Effective length of database: 3,963,321
Effective search space: 986866929
Effective search space used: 986866929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)