BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/343 (100%), Positives = 343/343 (100%) Query: 1 MNISSFAPRNHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRP 60 MNISSFAPRNHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRP Sbjct: 1 MNISSFAPRNHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRP 60 Query: 61 ILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRY 120 ILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRY Sbjct: 61 ILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRY 120 Query: 121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPY 180 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPY Sbjct: 121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPY 180 Query: 181 YEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEF 240 YEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEF Sbjct: 181 YEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEF 240 Query: 241 LSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA 300 LSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA Sbjct: 241 LSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA 300 Query: 301 HEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI 343 HEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI Sbjct: 301 HEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI 343 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 26.2 bits (56), Expect = 0.92, Method: Compositional matrix adjust. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77 +IG L+ LGT G D F + + ++ ++ R +L + PS I + Sbjct: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 Query: 78 YAKI 81 + I Sbjct: 533 FLYI 536 >gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 378 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 89 SILRTHTRDQATNLAKRLESISSIVVDWA-MRYGKPSVKEIINNLREE 135 S LR ++R +L + ES++ +++ WA + Y + +KEI + + E+ Sbjct: 308 SALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAED 355 >gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 285 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 11/44 (25%), Positives = 20/44 (45%) Query: 183 DSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPY 226 D I ++ H+ + QW + +L+SF P + G+ Y Sbjct: 42 DRGIIRIASRDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGY 85 >gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62] Length = 94 Score = 24.6 bits (52), Expect = 2.6, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Query: 88 ESILRT--HTRDQATNLAKRLESISSIVVD 115 E++ RT H R++ T + KRLE I + D Sbjct: 54 ENVKRTTSHLREEITAIGKRLEKIEQQLAD 83 >gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str. psy62] Length = 179 Score = 23.1 bits (48), Expect = 6.4, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 16/116 (13%) Query: 23 LVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIW 82 + NLG P G Y R +LL K+ L + + ILF + A + Sbjct: 22 VTNLG-PMGEVVKVKNGYARNYLLPKKKA-LRANKENKILF------ESQRSVLEAANLE 73 Query: 83 NTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCD 138 AK E I + +LAK+ S+ D YG S ++I + L EEG D Sbjct: 74 KKAKYEGI--------SKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121 >gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 176 Score = 23.1 bits (48), Expect = 6.5, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 303 AKEIFVNGGGEKFTQVPCLNSSNLSIDLLEK 333 +K+IF+ GGGE + Q L + L I +EK Sbjct: 98 SKKIFIIGGGEIYAQTISL-AHTLYITHIEK 127 >gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 24/54 (44%) Query: 73 KIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVK 126 +I H++ N A E + + + L +R SIS +D KP+VK Sbjct: 432 RIAHSFGLHENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVK 485 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.138 0.432 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 224,830 Number of Sequences: 1233 Number of extensions: 9251 Number of successful extensions: 26 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 8 length of query: 343 length of database: 328,796 effective HSP length: 75 effective length of query: 268 effective length of database: 236,321 effective search space: 63334028 effective search space used: 63334028 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)