HHsearch alignment for GI: 254780201 and conserved domain: COG3754

>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=0  Score=377.86  Aligned_cols=238  Identities=29%  Similarity=0.423  Sum_probs=212.4

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCH--HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf             1473899994167789999999970899814999717652--89999997117873899945666047999986221002
Q gi|254780201|r  148 KSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEAN--KDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVF  225 (394)
Q Consensus       148 k~kIAVvlHlyY~DLl~E~~~~L~~ip~~~DL~ITt~~~~--~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~~~~~~~l  225 (394)
T Consensus       292 ~~kIav~lHv~ytdll~e~l~laen~~~~ydl~~tt~~p~k~~~i~~~~arkp~~A~v~v~~nrGrd~~pll~~~~~~~~  371 (595)
T COG3754         292 IQKIAVHLHVYYTDLLDEFLALAENTPFPYDLILTTDTPDKVAEIQRALARKPKNAFVRVVENRGRDIGPLLHLLRDLKG  371 (595)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf             10268884146403589999998647988651774488156669999854488763687047876300317999875478


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             78678999736877677776444078999999874799899999999976099768981687654433234554322138
Q gi|254780201|r  226 DRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYR  305 (394)
Q Consensus       226 ~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~~~~~  305 (394)
T Consensus       372 d~ydlI~~~htkksgq~~--~~~Ge~~r~~~~~~L~~~~~~v~n~~~~~~~~~~~~~~ip~~f~i~-~~~~~~aw~~~~a  448 (595)
T COG3754         372 DRYDLVCRLHTKKSGQAD--FWAGELWRHHTIDNLLASRGYVTNALEIFADNPSVGADIPPFFRLN-YPTEGIAWFENRA  448 (595)
T ss_pred             CCEEEEEEEEECCCCCCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE-CCCCCCHHHHHHH
T ss_conf             753576455421675410--1334268999998762477203236564300554220148705880-3566417988678


Q ss_pred             HHHHHHHHCCCCCCC--CCCCCCCEEEEEEEHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             999999974899885--54773770123320988875765882-235854468888738999999999999986980335
Q gi|254780201|r  306 RVIDLAKRAGFPTKR--LHLDFFNGTMFWVKPKCLEPLRNLHL-IGEFEEERNLKDGALEHAVERFFACSVRYTEFSIES  382 (394)
Q Consensus       306 ~~~~L~~rlgi~~~~--~~~~FpaGSMFW~R~~AL~pL~~l~l-~~DF~~E~g~~DGTlaHAIERl~~~iv~~~gf~i~~  382 (394)
T Consensus       449 ~~~dl~~~m~~~~~~d~~T~~~~ygtm~W~r~~aLr~lfe~~l~~~~f~~e~~~~d~~~ahaiEr~l~yva~~~g~~~~~  528 (595)
T COG3754         449 AVADLLRLMGMNVKTDRNTFVAAYGTMFWFRPRALRPLFELELGWNDFPAEPLPQDGHLAHAIERLLAYVAWDAGYAFRH  528 (595)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHC
T ss_conf             99989987077665332321454355543278888888875413645432468877388889999999998310023321


Q ss_pred             EHHHHH
Q ss_conf             247565
Q gi|254780201|r  383 VDCVAE  388 (394)
Q Consensus       383 v~~~~~  388 (394)
T Consensus       529 ~m~a~~  534 (595)
T COG3754         529 VMTAFA  534 (595)
T ss_pred             CCCCCC
T ss_conf             567100