HHsearch alignment for GI: 254780201 and conserved domain: COG3754
>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=377.86 Aligned_cols=238 Identities=29% Similarity=0.423 Sum_probs=212.4
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCH--HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 1473899994167789999999970899814999717652--89999997117873899945666047999986221002
Q gi|254780201|r 148 KSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEAN--KDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVF 225 (394)
Q Consensus 148 k~kIAVvlHlyY~DLl~E~~~~L~~ip~~~DL~ITt~~~~--~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~~~~~~~l 225 (394)
T Consensus 292 ~~kIav~lHv~ytdll~e~l~laen~~~~ydl~~tt~~p~k~~~i~~~~arkp~~A~v~v~~nrGrd~~pll~~~~~~~~ 371 (595)
T COG3754 292 IQKIAVHLHVYYTDLLDEFLALAENTPFPYDLILTTDTPDKVAEIQRALARKPKNAFVRVVENRGRDIGPLLHLLRDLKG 371 (595)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 10268884146403589999998647988651774488156669999854488763687047876300317999875478
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 78678999736877677776444078999999874799899999999976099768981687654433234554322138
Q gi|254780201|r 226 DRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYR 305 (394)
Q Consensus 226 ~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~~~~~ 305 (394)
T Consensus 372 d~ydlI~~~htkksgq~~--~~~Ge~~r~~~~~~L~~~~~~v~n~~~~~~~~~~~~~~ip~~f~i~-~~~~~~aw~~~~a 448 (595)
T COG3754 372 DRYDLVCRLHTKKSGQAD--FWAGELWRHHTIDNLLASRGYVTNALEIFADNPSVGADIPPFFRLN-YPTEGIAWFENRA 448 (595)
T ss_pred CCEEEEEEEEECCCCCCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE-CCCCCCHHHHHHH
T ss_conf 753576455421675410--1334268999998762477203236564300554220148705880-3566417988678
Q ss_pred HHHHHHHHCCCCCCC--CCCCCCCEEEEEEEHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999999974899885--54773770123320988875765882-235854468888738999999999999986980335
Q gi|254780201|r 306 RVIDLAKRAGFPTKR--LHLDFFNGTMFWVKPKCLEPLRNLHL-IGEFEEERNLKDGALEHAVERFFACSVRYTEFSIES 382 (394)
Q Consensus 306 ~~~~L~~rlgi~~~~--~~~~FpaGSMFW~R~~AL~pL~~l~l-~~DF~~E~g~~DGTlaHAIERl~~~iv~~~gf~i~~ 382 (394)
T Consensus 449 ~~~dl~~~m~~~~~~d~~T~~~~ygtm~W~r~~aLr~lfe~~l~~~~f~~e~~~~d~~~ahaiEr~l~yva~~~g~~~~~ 528 (595)
T COG3754 449 AVADLLRLMGMNVKTDRNTFVAAYGTMFWFRPRALRPLFELELGWNDFPAEPLPQDGHLAHAIERLLAYVAWDAGYAFRH 528 (595)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 99989987077665332321454355543278888888875413645432468877388889999999998310023321
Q ss_pred EHHHHH
Q ss_conf 247565
Q gi|254780201|r 383 VDCVAE 388 (394)
Q Consensus 383 v~~~~~ 388 (394)
T Consensus 529 ~m~a~~ 534 (595)
T COG3754 529 VMTAFA 534 (595)
T ss_pred CCCCCC
T ss_conf 567100