HHsearch alignment for GI: 254780201 and conserved domain: COG3754
>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].
Probab=99.29 E-value=3.4e-13 Score=100.68 Aligned_cols=289 Identities=11% Similarity=-0.051 Sum_probs=191.6
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3324789998878763012211155-32688-740578888789886157568978999999999999999751001585
Q gi|254780201|r 11 LGKIENLLLRLDVEEKGNMQAIYIP-AHVSG-YYVLWSFSPKQRITSKDVHFQELSIFESFIFWLRSFLAFSKYSKLSFP 88 (394)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~y~p-~~~pg-~~~~WDntpR~~~~~~~~~~~tP~~f~~~~~wl~~~l~~~~~~~~~~~ 88 (394)
T Consensus 301 v~ytdll~e~l~laen~~~~ydl~~tt~~p~k~~~i~~~~arkp--~~A~v~v~~nrGr-----d~~pll~~~--~~~~- 370 (595)
T COG3754 301 VYYTDLLDEFLALAENTPFPYDLILTTDTPDKVAEIQRALARKP--KNAFVRVVENRGR-----DIGPLLHLL--RDLK- 370 (595)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCC--CCCEEECCCCCCC-----CCHHHHHHH--HHCC-
T ss_conf 46403589999998647988651774488156669999854488--7636870478763-----003179998--7547-
Q ss_pred CCEEEEEEEECC--CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHCCCCEEEEEEECCHHHHHH
Q ss_conf 643999973137--74100732687187559999997302-664202467822101100000147389999416778999
Q gi|254780201|r 89 SCRIFFYGSRKE--QKAFLRLNRFMSNSRMPFDSEKFLYV-KELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIE 165 (394)
Q Consensus 89 ~~~ivfinaWNE--EG~yLePD~~~G~~yL~a~~~al~~~-~~~~~~~~~~p~~~~~~~~~~k~kIAVvlHlyY~DLl~E 165 (394)
T Consensus 371 ~d~ydlI~~~htkksgq~---~~~~Ge~~r~~~~~~L~~~~~~v~n~---~~~~~~~~~~~~~ip~~f~i~-~~~~~~aw 443 (595)
T COG3754 371 GDRYDLVCRLHTKKSGQA---DFWAGELWRHHTIDNLLASRGYVTNA---LEIFADNPSVGADIPPFFRLN-YPTEGIAW 443 (595)
T ss_pred CCCEEEEEEEEECCCCCC---CCCCCHHHHHHHHHHHHCCCCCHHHH---HHHHHHCCCCCCCCCCEEEEE-CCCCCCHH
T ss_conf 875357645542167541---01334268999998762477203236---564300554220148705880-35664179
Q ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99999708998149997176528999999711787389994566604799998622100278678999736877677776
Q gi|254780201|r 166 ISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYH 245 (394)
Q Consensus 166 ~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~ 245 (394)
T Consensus 444 ~-~~~a~~~dl~~~m~~~~~~-------d~~T~~~~ygtm~W~r~~aLr~lfe~-----~l~~~~f~~e~~~~d~~---- 506 (595)
T COG3754 444 F-ENRAAVADLLRLMGMNVKT-------DRNTFVAAYGTMFWFRPRALRPLFEL-----ELGWNDFPAEPLPQDGH---- 506 (595)
T ss_pred H-HHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHCCHHHHHHHHHH-----HCCHHHHHHCCCCCCHH----
T ss_conf 8-8678999899870776653-------32321454355543278888888875-----41364543246887738----
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 44407899999987479989999999997609976898168765443323455432213899999997489988554773
Q gi|254780201|r 246 PIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFPTKRLHLDF 325 (394)
Q Consensus 246 ~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~~~~~~~~~L~~rlgi~~~~~~~~F 325 (394)
T Consensus 507 ~ahaiEr~l~yva~~~g--~~~~~~m~a~~~~~~~~~l~~~-----------------------~~-~~~~~~~~~--~~ 558 (595)
T COG3754 507 LAHAIERLLAYVAWDAG--YAFRHVMTAFAAEPNYDMLEAK-----------------------LQ-RLRSGDPSA--DF 558 (595)
T ss_pred HHHHHHHHHHHHHHCCH--HHHHCCCCCCCCCCCCCHHHHH-----------------------HH-HHHCCCCCC--CC
T ss_conf 88899999999983100--2332156710047883068887-----------------------77-751589963--31
Q ss_pred CCEEEEEEEHHHHHHHHCCCCC-CCCCCCCCCCCCHHHH
Q ss_conf 7701233209888757658822-3585446888873899
Q gi|254780201|r 326 FNGTMFWVKPKCLEPLRNLHLI-GEFEEERNLKDGALEH 363 (394)
Q Consensus 326 paGSMFW~R~~AL~pL~~l~l~-~DF~~E~g~~DGTlaH 363 (394)
T Consensus 559 ~~~--~~~~~~vk~~l~~l~~~~~~~~~~~~~~l~~~~~ 595 (595)
T COG3754 559 NLR--FWGRTSVKRALRDLIDAIKKSGKERGPILFRKLR 595 (595)
T ss_pred HHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 233--0440436777778779998751555066665229