HHsearch alignment for GI: 254780201 and conserved domain: COG3754

>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].
Probab=99.29  E-value=3.4e-13  Score=100.68  Aligned_cols=289  Identities=11%  Similarity=-0.051  Sum_probs=191.6

Q ss_pred             HCCHHHHHHHHHHHHHCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             3324789998878763012211155-32688-740578888789886157568978999999999999999751001585
Q gi|254780201|r   11 LGKIENLLLRLDVEEKGNMQAIYIP-AHVSG-YYVLWSFSPKQRITSKDVHFQELSIFESFIFWLRSFLAFSKYSKLSFP   88 (394)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~y~p-~~~pg-~~~~WDntpR~~~~~~~~~~~tP~~f~~~~~wl~~~l~~~~~~~~~~~   88 (394)
T Consensus       301 v~ytdll~e~l~laen~~~~ydl~~tt~~p~k~~~i~~~~arkp--~~A~v~v~~nrGr-----d~~pll~~~--~~~~-  370 (595)
T COG3754         301 VYYTDLLDEFLALAENTPFPYDLILTTDTPDKVAEIQRALARKP--KNAFVRVVENRGR-----DIGPLLHLL--RDLK-  370 (595)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCC--CCCEEECCCCCCC-----CCHHHHHHH--HHCC-
T ss_conf             46403589999998647988651774488156669999854488--7636870478763-----003179998--7547-


Q ss_pred             CCEEEEEEEECC--CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHCCCCEEEEEEECCHHHHHH
Q ss_conf             643999973137--74100732687187559999997302-664202467822101100000147389999416778999
Q gi|254780201|r   89 SCRIFFYGSRKE--QKAFLRLNRFMSNSRMPFDSEKFLYV-KELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIE  165 (394)
Q Consensus        89 ~~~ivfinaWNE--EG~yLePD~~~G~~yL~a~~~al~~~-~~~~~~~~~~p~~~~~~~~~~k~kIAVvlHlyY~DLl~E  165 (394)
T Consensus       371 ~d~ydlI~~~htkksgq~---~~~~Ge~~r~~~~~~L~~~~~~v~n~---~~~~~~~~~~~~~ip~~f~i~-~~~~~~aw  443 (595)
T COG3754         371 GDRYDLVCRLHTKKSGQA---DFWAGELWRHHTIDNLLASRGYVTNA---LEIFADNPSVGADIPPFFRLN-YPTEGIAW  443 (595)
T ss_pred             CCCEEEEEEEEECCCCCC---CCCCCHHHHHHHHHHHHCCCCCHHHH---HHHHHHCCCCCCCCCCEEEEE-CCCCCCHH
T ss_conf             875357645542167541---01334268999998762477203236---564300554220148705880-35664179


Q ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             99999708998149997176528999999711787389994566604799998622100278678999736877677776
Q gi|254780201|r  166 ISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYH  245 (394)
Q Consensus       166 ~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~  245 (394)
T Consensus       444 ~-~~~a~~~dl~~~m~~~~~~-------d~~T~~~~ygtm~W~r~~aLr~lfe~-----~l~~~~f~~e~~~~d~~----  506 (595)
T COG3754         444 F-ENRAAVADLLRLMGMNVKT-------DRNTFVAAYGTMFWFRPRALRPLFEL-----ELGWNDFPAEPLPQDGH----  506 (595)
T ss_pred             H-HHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHCCHHHHHHHHHH-----HCCHHHHHHCCCCCCHH----
T ss_conf             8-8678999899870776653-------32321454355543278888888875-----41364543246887738----


Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             44407899999987479989999999997609976898168765443323455432213899999997489988554773
Q gi|254780201|r  246 PIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFPTKRLHLDF  325 (394)
Q Consensus       246 ~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~~~~~~~~~L~~rlgi~~~~~~~~F  325 (394)
T Consensus       507 ~ahaiEr~l~yva~~~g--~~~~~~m~a~~~~~~~~~l~~~-----------------------~~-~~~~~~~~~--~~  558 (595)
T COG3754         507 LAHAIERLLAYVAWDAG--YAFRHVMTAFAAEPNYDMLEAK-----------------------LQ-RLRSGDPSA--DF  558 (595)
T ss_pred             HHHHHHHHHHHHHHCCH--HHHHCCCCCCCCCCCCCHHHHH-----------------------HH-HHHCCCCCC--CC
T ss_conf             88899999999983100--2332156710047883068887-----------------------77-751589963--31


Q ss_pred             CCEEEEEEEHHHHHHHHCCCCC-CCCCCCCCCCCCHHHH
Q ss_conf             7701233209888757658822-3585446888873899
Q gi|254780201|r  326 FNGTMFWVKPKCLEPLRNLHLI-GEFEEERNLKDGALEH  363 (394)
Q Consensus       326 paGSMFW~R~~AL~pL~~l~l~-~DF~~E~g~~DGTlaH  363 (394)
T Consensus       559 ~~~--~~~~~~vk~~l~~l~~~~~~~~~~~~~~l~~~~~  595 (595)
T COG3754         559 NLR--FWGRTSVKRALRDLIDAIKKSGKERGPILFRKLR  595 (595)
T ss_pred             HHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             233--0440436777778779998751555066665229