HHsearch alignment for GI: 254780201 and conserved domain: cd02525
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=91.24 E-value=1.2 Score=23.92 Aligned_cols=187 Identities=10% Similarity=0.096 Sum_probs=90.3
Q ss_pred EEEEEEECC-HHHHHHHHHHHHHCC---CCEEEEEECC--C-CHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHCC
Q ss_conf 389999416-778999999997089---9814999717--6-528999999711787389994566604799998-6221
Q gi|254780201|r 151 IAIVVHCYY-QDTWIEISHILLRLN---FDFDLFVTVV--E-ANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLY-LLEL 222 (394)
Q Consensus 151 IAVvlHlyY-~DLl~E~~~~L~~ip---~~~DL~ITt~--~-~~~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~-~~~~ 222 (394)
T Consensus 2 VSViIp~yN~~~~l~~~l~Sl~~q~yp~~~~EVIvVDd~S~D~t~~~~~~~~~~~~~--i~~~~~~~~~~~~a~N~gi-- 77 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPR--IRLIDNPKRIQSAGLNIGI-- 77 (249)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC--EEECCCCCCCHHHHHHHHH--
T ss_conf 899993569789999999999846899998899999895961569999999740771--3211355565899998989--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 00278678999736877677776444078999999874799899999999976099768981687654433234554322
Q gi|254780201|r 223 GVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSE 302 (394)
Q Consensus 223 ~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~~ 302 (394)
T Consensus 78 -~~a~gd~i~~lD~D~~---------------------~-~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~-------~~- 126 (249)
T cd02525 78 -RNSRGDIIIRVDAHAV---------------------Y-PKDYILELVEALKRTGADNVGGPMETIGES-------KF- 126 (249)
T ss_pred -HHCCCCEEEEECCCCC---------------------C-CHHHHHHHHHHHHCCCCEEEEEEEEECCCC-------HH-
T ss_conf -9668776884147765---------------------6-956999999998778971999888506897-------27-
Q ss_pred CHHHHHHHH-HHCCC-----CCCCCCCC-CCC--EEEEEEEHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 138999999-97489-----98855477-377--01233209888757658822-3585446888873899999999999
Q gi|254780201|r 303 VYRRVIDLA-KRAGF-----PTKRLHLD-FFN--GTMFWVKPKCLEPLRNLHLI-GEFEEERNLKDGALEHAVERFFACS 372 (394)
Q Consensus 303 ~~~~~~~L~-~rlgi-----~~~~~~~~-Fpa--GSMFW~R~~AL~pL~~l~l~-~DF~~E~g~~DGTlaHAIERl~~~i 372 (394)
T Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--rr~~~~~i---Ggfde~~~-----------~~ED~dl~~R 189 (249)
T cd02525 127 -QKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAY--RREVFEKV---GGFDESLV-----------RNEDAELNYR 189 (249)
T ss_pred -HHHHHHHHHCCCCCCCCCCCCCCCCCCEECCEEEEEE--EHHHHHHH---CCCCCCCC-----------CCHHHHHHHH
T ss_conf -7777887626432352000132245845421357988--88899973---89987778-----------2389999999
Q ss_pred HHHCCCEEEEEHHHHHH
Q ss_conf 99869803352475657
Q gi|254780201|r 373 VRYTEFSIESVDCVAEY 389 (394)
Q Consensus 373 v~~~gf~i~~v~~~~~~ 389 (394)
T Consensus 190 ~~~~G~ki~~~p~a~v~ 206 (249)
T cd02525 190 LRKAGYKIWLSPDIRVY 206 (249)
T ss_pred HHHCCCEEEEECCEEEE
T ss_conf 99769979991887999