HHsearch alignment for GI: 254780201 and conserved domain: cd06434
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.77 E-value=0.16 Score=29.20 Aligned_cols=195 Identities=14% Similarity=0.202 Sum_probs=105.1
Q ss_pred EEEEEEECCH--HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH--HHCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 3899994167--7899999999708998149997176528999999--71178738999456660479999862210027
Q gi|254780201|r 151 IAIVVHCYYQ--DTWIEISHILLRLNFDFDLFVTVVEANKDFEQDV--LKYFPSAQLYVMENKGRDVRPFLYLLELGVFD 226 (394)
Q Consensus 151 IAVvlHlyY~--DLl~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~--~~~~~~a~V~vv~NRGRDI~PfL~~~~~~~l~ 226 (394)
T Consensus 2 VsviIPayNE~~~il~~~l~s~~~~~-~~eiivV~D~s~d~~~~~~~~~~~~~~~~v~~~~~~GK~-~Aln~~l~---~a 76 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPHPGKR-RALAEGIR---HV 76 (235)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHH---HC
T ss_conf 79999522697689999999998089-998999988999728999998634897899988989989-99999999---75
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHH-
Q ss_conf 8678999736877677776444078999999874799899999999976099768981687654433234554322138-
Q gi|254780201|r 227 RYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYR- 305 (394)
Q Consensus 227 ~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~~~~~- 305 (394)
T Consensus 77 ~~d~v~~~DaD~---------------------~~-~~~~l~~l~~~f~-d~~vg~V~~~~~~~-~~~---~~~~~~~~~ 129 (235)
T cd06434 77 TTDIVVLLDSDT---------------------VW-PPNALPEMLKPFE-DPKVGGVGTNQRIL-RPR---DSKWSFLAA 129 (235)
T ss_pred CCCEEEEECCCC---------------------CC-CHHHHHHHHHHHC-CCCEEEEEEEEEEE-CCC---CCHHHHHHH
T ss_conf 778899985885---------------------35-8889999999648-99879997038864-699---989999999
Q ss_pred ---HHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHCCCEEE
Q ss_conf ---9999999748998855477377012332098887576588223585446888873899999-999999998698033
Q gi|254780201|r 306 ---RVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHAVE-RFFACSVRYTEFSIE 381 (394)
Q Consensus 306 ---~~~~L~~rlgi~~~~~~~~FpaGSMFW~R~~AL~pL~~l~l~~DF~~E~g~~DGTlaHAIE-Rl~~~iv~~~gf~i~ 381 (394)
T Consensus 130 ~~~~~~~~~~~~~~~~-~g~~~~~~G~~~~~Rr~~l~~~~~~---~~~~~~~~~--g~~~~~~ED~~lt~r~~~~G~r~~ 203 (235)
T cd06434 130 EYLERRNEEIRAAMSY-DGGVPCLSGRTAAYRTEILKDFLFL---EEFTNETFM--GRRLNAGDDRFLTRYVLSHGYKTV 203 (235)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEECCHHHHHHHHHHHHHCCH---HCCCCCCCC--CCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9999999999999985-5986896370799999999853301---012300027--777764269999999998699899
Q ss_pred EE
Q ss_conf 52
Q gi|254780201|r 382 SV 383 (394)
Q Consensus 382 ~v 383 (394)
T Consensus 204 y~ 205 (235)
T cd06434 204 YQ 205 (235)
T ss_pred EE
T ss_conf 92