Query gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 394 No_of_seqs 155 out of 190 Neff 5.5 Searched_HMMs 23785 Date Mon May 23 14:56:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780201.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1qg8_A Protein (spore coat pol 88.7 1.1 4.8E-05 22.7 10.0 113 149-286 1-125 (255) 2 2z86_A Chondroitin synthase; G 79.6 3 0.00012 20.2 19.2 117 146-288 372-493 (625) 3 2ffu_A Ppgalnact-2, polypeptid 69.6 5.3 0.00022 18.6 14.9 249 98-387 8-286 (501) 4 1qwj_A Cytidine monophospho-N- 62.0 7.5 0.00031 17.7 6.9 96 162-284 30-130 (229) 5 1vlr_A MRNA decapping enzyme; 50.2 5.7 0.00024 18.4 1.6 14 279-292 275-288 (350) 6 1omz_A Alpha-1,4-N-acetylhexos 50.2 12 0.0005 16.5 12.9 120 143-288 22-145 (293) 7 3bl9_A Scavenger mRNA-decappin 44.7 9.1 0.00038 17.2 2.0 54 55-114 111-175 (301) 8 2rbg_A Putative uncharacterize 40.2 17 0.00071 15.5 6.4 105 57-201 8-112 (126) 9 1ezi_A CMP-N-acetylneuraminic 37.8 18 0.00077 15.3 6.4 154 161-341 30-189 (228) 10 2dt7_A Splicing factor 3A subu 22.0 35 0.0015 13.6 2.2 29 57-85 3-31 (38) 11 1vkr_A Mannitol-specific PTS s 21.7 35 0.0015 13.6 3.9 34 172-209 55-88 (125) No 1 >1qg8_A Protein (spore coat polysaccharide biosynthesis protein SPSA); glycosyltransferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Probab=88.72 E-value=1.1 Score=22.67 Aligned_cols=113 Identities=16% Similarity=0.325 Sum_probs=67.6 Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHCCCCCEEEE--ECCCC-----HHHH---HH Q ss_conf 4738999941-67789999999970899-814999717652899999971178738999--45666-----0479---99 Q gi|254780201|r 149 SKIAIVVHCY-YQDTWIEISHILLRLNF-DFDLFVTVVEANKDFEQDVLKYFPSAQLYV--MENKG-----RDVR---PF 216 (394) Q Consensus 149 ~kIAVvlHly-Y~DLl~E~~~~L~~ip~-~~DL~ITt~~~~~~~~~~~~~~~~~a~V~v--v~NRG-----RDI~---Pf 216 (394) +||.|++=.| -++.+.++++.+.+-.. .++++|--+.......+.+.+......|++ .+|.| +..+ .+ T Consensus 1 P~vSIiip~yN~~~~l~~~l~Si~~qt~~~~eiiivdd~S~d~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~n~g~~~a~ 80 (255) T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255) T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHH T ss_conf 97999995389889999999999828899859999989797318999999732011110002344320011335599999 Q ss_pred HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 9862210027867899973687767777644407899999987479989999999997609976898168 Q gi|254780201|r 217 LYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSR 286 (394) Q Consensus 217 L~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~ 286 (394) =.+++ ..+.|||+.+++== ++ +++.++.+++.|+++|.+++++.. T Consensus 81 N~gi~---~a~g~~i~~lD~Dd---------------------~~-~p~~l~~~~~~~~~~~~~~~v~~~ 125 (255) T 1qg8_A 81 NQAIE---MAEGEYITYATDDN---------------------IY-MPDRLLKMVRELDTHPEKAVIYSA 125 (255) T ss_dssp HHHHH---HCCCSEEEEEETTE---------------------EE-CTTHHHHHHHHHHHCTTCCEEEEE T ss_pred HHHHH---CCCCCEEEEECCCC---------------------CC-CCCHHHHHHHHHHHCCCEEEEEEE T ss_conf 85543---15875467732664---------------------31-123799999999868981699933 No 2 >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Probab=79.58 E-value=3 Score=20.15 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=76.8 Q ss_pred HCCCCEEEEEEEC-CHHHHHHHHHHHHHCC-CCEEEEEECC---CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH Q ss_conf 0014738999941-6778999999997089-9814999717---652899999971178738999456660479999862 Q gi|254780201|r 146 TIKSKIAIVVHCY-YQDTWIEISHILLRLN-FDFDLFVTVV---EANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLL 220 (394) Q Consensus 146 ~~k~kIAVvlHly-Y~DLl~E~~~~L~~ip-~~~DL~ITt~---~~~~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~~~ 220 (394) ...++|.|++-.| -++.+.++++.+.+-. ..+.++|.-+ ++..++..+.....+.+.+...+|.|.- ..+=.++ T Consensus 372 ~~~p~vsvii~~~n~~~~l~~~l~Si~~q~~~~~eiiivdd~s~~~t~~~l~~~~~~~~~i~~~~~~n~g~~-~a~N~~i 450 (625) T 2z86_A 372 KRVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFISQKNKGIG-SASNTAV 450 (625) T ss_dssp CSSCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEEECCCCHH-HHHHHHH T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHH-HHHHHHH T ss_conf 678647774034451777888765210112232789997479984279999998632881899956898889-9999999 Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 21002786789997368776777764440789999998747998999999999760997689816876 Q gi|254780201|r 221 ELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRY 288 (394) Q Consensus 221 ~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~ 288 (394) + ..+-|||+.+++-=- + .++.++.+++.|+++|.+++|++... T Consensus 451 ~---~a~g~~i~~ld~Dd~---------------------~-~p~~l~~~~~~~~~~~~~~~v~~~~~ 493 (625) T 2z86_A 451 R---LCRGFYIGQLDSDDF---------------------L-EPDAVELCLDEFRKDLSLACVYTTNR 493 (625) T ss_dssp H---HCCSSEEEECCTTCE---------------------E-CTTHHHHHHHHHHHCTTCSEEEEEEE T ss_pred H---HCCCCEEEEECCCCC---------------------C-CHHHHHHHHHHHHHCCCCCEEECCEE T ss_conf 8---589888999768976---------------------0-82799999999984988536841348 No 3 >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Probab=69.62 E-value=5.3 Score=18.59 Aligned_cols=249 Identities=11% Similarity=0.107 Sum_probs=118.3 Q ss_pred ECC--CCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEEECCH--H-HHHH Q ss_conf 137--74100732-------6871875599999973026642024678221011000001473899994167--7-8999 Q gi|254780201|r 98 RKE--QKAFLRLN-------RFMSNSRMPFDSEKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQ--D-TWIE 165 (394) Q Consensus 98 WNE--EG~yLePD-------~~~G~~yL~a~~~al~~~~~~~~~~~~~p~~~~~~~~~~k~kIAVvlHlyY~--D-Ll~E 165 (394) |+. |..||... ..-.++|=..+.+.+.--..+-.. .+|.-....-..--++|-||+-.|=. . |+.. T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~i~~~r~~~d~--r~~~c~~~~y~~~lP~vSVII~~~Ne~~~~L~rt 85 (501) T 2ffu_A 8 WPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDT--RHDQCQRKQWRVDLPATSVVITFHNEARSALLRT 85 (501) T ss_dssp GGGSCHHHHHHTTCCCTTSCTTTTTSSCHHHHHHSCTTCCCCCC--SCGGGGGCCCCSSCCCEEEEEEESSCCHHHHHHH T ss_pred HHHCCHHHHCCHHHHHCCHHHHHHHCCCHHHHCCCCCCCCCCCC--CCHHHCCCCCCCCCCCEEEEEEEEECCHHHHHHH T ss_conf 33368554157565421055798818208775115668988998--8832241558999998589998400847999999 Q ss_pred HHHHHHHCCCCE--EEEEECCCCHHHHHHHHHHCCCCCEEEEEC-CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC Q ss_conf 999997089981--499971765289999997117873899945-66604799998622100278678999736877677 Q gi|254780201|r 166 ISHILLRLNFDF--DLFVTVVEANKDFEQDVLKYFPSAQLYVME-NKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQRE 242 (394) Q Consensus 166 ~~~~L~~ip~~~--DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~-NRGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~ 242 (394) +-..|...|..+ .|+|-=+-........+.+..+.+.|...+ |.|- +.+.-.+++ ...-|+++.+.+==- T Consensus 86 i~Svl~~tp~~ll~EIIvVDDgStd~t~~~l~~~~~~ikii~~~~n~G~-~~ArN~G~~---~A~Gd~I~fLD~D~~--- 158 (501) T 2ffu_A 86 VVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGL-MRSRVRGAD---AAQAKVLTFLDSHCE--- 158 (501) T ss_dssp HHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHH-HHHHHHHHH---HCCSSEEEECCSSEE--- T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHH---HCCCCEEEEECCCCC--- T ss_conf 9999855951039889999899993289999861998799989998588-999999999---727998999889987--- Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC------CCCCCCC---------CCCCCCCCCCHHHH Q ss_conf 77644407899999987479989999999997609976898168------7654433---------23455432213899 Q gi|254780201|r 243 GYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSR------RYRRYKR---------WSFFAKRSEVYRRV 307 (394) Q Consensus 243 ~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~------~~~~~~~---------~~~~~~~~~~~~~~ 307 (394) + +++.++.+++.+.+++..+.+..- ....... +.....+... .. T Consensus 159 ------------------~-~~~wLe~Ll~~i~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~--~~ 217 (501) T 2ffu_A 159 ------------------C-NEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYM--TP 217 (501) T ss_dssp ------------------E-CTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEEC--CH T ss_pred ------------------C-CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCC--CH T ss_conf ------------------7-97699999999981997177304751178860221555443553211333343435--54 Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHH Q ss_conf 99999748998855477377012332098887576588223585446888873899999999999998698033524756 Q gi|254780201|r 308 IDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHAVERFFACSVRYTEFSIESVDCVA 387 (394) Q Consensus 308 ~~L~~rlgi~~~~~~~~FpaGSMFW~R~~AL~pL~~l~l~~DF~~E~g~~DGTlaHAIERl~~~iv~~~gf~i~~v~~~~ 387 (394) .....+......+...++.+|..|-+|.+++..+=-.+ +.|.. . | .=+--+++-+..+|++|..+-|.. T Consensus 218 ~~~~~~~~~~~~~~~~~~~~G~~~~irR~~f~~iGgfD--e~~~~----~-g----~ED~dls~R~~~~Gg~i~~~P~s~ 286 (501) T 2ffu_A 218 EQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYD--MMMDV----W-G----GENLEISFRVWQCGGSLEIIPCSR 286 (501) T ss_dssp HHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCC--TTCCS----S-S----SHHHHHHHHHHHTTCEEEEEEEEE T ss_pred HHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCC--CCCCC----C-C----CHHHHHHHHHHHCCCCEEEECCEE T ss_conf 66541013545543344201123456899999718999--86456----6-6----207999999875478499948739 No 4 >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Probab=62.01 E-value=7.5 Score=17.69 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=53.9 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEE-EC----CCCHHHHHHHHHHCCCCCCCCCEEEEECC Q ss_conf 89999999970899814999717652899999971178738999-45----66604799998622100278678999736 Q gi|254780201|r 162 TWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYV-ME----NKGRDVRPFLYLLELGVFDRYDYLCKIHG 236 (394) Q Consensus 162 Ll~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~v-v~----NRGRDI~PfL~~~~~~~l~~YD~v~klHt 236 (394) |++-.++.+.....--+++|+|+++... . ..... .+.+.. -+ +.-.....+...+. .....++++-++. T Consensus 30 Li~~~i~~~~~~~~~~~Iivstd~~~i~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~iv~~~~ 103 (229) T 1qwj_A 30 LIGWVLRAALDAGVFQSVWVSTDHDEIE--N-VAKQF-GAQVHRRSSETSKDSSTSLDAIVEFLN--YHNEVDIVGNIQA 103 (229) T ss_dssp HHHHHHHHHHHHTCCSEEEEEESCHHHH--H-HHHHT-TCEEEECCGGGSSTTCCHHHHHHHHHT--TCTTCSEEEEECT T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHC--C-CHHCC-CCCCCCCCCCCCCCCCHHHHHHCCCCC--CCCCCCEEEECCC T ss_conf 7999999999669988799954402110--2-01025-851024435324663012222100002--3555788997236 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 877677776444078999999874799899999999976099768981 Q gi|254780201|r 237 KKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIG 284 (394) Q Consensus 237 KKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~ 284 (394) -|| +-+.+.+.+.++.|..+..-.++. T Consensus 104 -~~P--------------------~~~~~~I~~~i~~~~~~~~d~~~~ 130 (229) T 1qwj_A 104 -TSP--------------------CLHPTDLQKVAEMIREEGYDSVFS 130 (229) T ss_dssp -TCT--------------------TCCHHHHHHHHHHHHSSCCSEEEE T ss_pred -CCC--------------------CCCHHHHHHHHHHHHHCCCCEEEE T ss_conf -776--------------------578899999999998579977999 No 5 >1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Probab=50.19 E-value=5.7 Score=18.40 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=7.5 Q ss_pred CEEEEECCCCCCCC Q ss_conf 76898168765443 Q gi|254780201|r 279 CLGMIGSRRYRRYK 292 (394) Q Consensus 279 ~lGlv~p~~~~~~~ 292 (394) ++++=+++.+++.+ T Consensus 275 Rly~HYqPSyYHlH 288 (350) T 1vlr_A 275 RVYLHYLPSYYHLH 288 (350) T ss_dssp EEEEESSCSSSSCE T ss_pred EEEEECCCCCCCEE T ss_conf 99981599743169 No 6 >1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A* Probab=50.18 E-value=12 Score=16.48 Aligned_cols=120 Identities=8% Similarity=0.015 Sum_probs=76.4 Q ss_pred HHHHCCCCEEEEEEECC-HHHHHHHHHHHHHCCCCEEEEEECCC---CHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 00000147389999416-77899999999708998149997176---528999999711787389994566604799998 Q gi|254780201|r 143 SGLTIKSKIAIVVHCYY-QDTWIEISHILLRLNFDFDLFVTVVE---ANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLY 218 (394) Q Consensus 143 ~~~~~k~kIAVvlHlyY-~DLl~E~~~~L~~ip~~~DL~ITt~~---~~~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~ 218 (394) .+.....+++|++=.|= +|++.++++.+.+.+....++|--.. +..+...+.....+...+..-+|.|-.-+ .-. T Consensus 22 ~~~~~~~~~tviI~tynr~~~L~~~l~sl~~~~~~~~iiVV~n~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a-~n~ 100 (293) T 1omz_A 22 PSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRN-RLQ 100 (293) T ss_dssp ----CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGG-GGS T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHH-HHH T ss_conf 6658899779999468998999999999980899983999989999976899986407899789996289880878-766 Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 6221002786789997368776777764440789999998747998999999999760997689816876 Q gi|254780201|r 219 LLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRY 288 (394) Q Consensus 219 ~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~ 288 (394) +++ ..+.|+|..+-+== +-.++.+++++..|+++|..++.++... T Consensus 101 g~~---~a~~d~i~~lDdD~----------------------~~~p~~L~~~~~~~~~~~~~~v~~~~~~ 145 (293) T 1omz_A 101 VFP---EVETNAVLMVDDDT----------------------LISAQDLVFAFSIWQQFPDQIIGFVPRK 145 (293) T ss_dssp CCT---TCCSSEEEEECTTE----------------------EECHHHHHHHHHHHTTSTTSEEESCEEE T ss_pred HHH---HCCCCEEEEECCCC----------------------CCHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 687---66957799987511----------------------2006899999999986985379743221 No 7 >3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Probab=44.66 E-value=9.1 Score=17.18 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=35.8 Q ss_pred CCEEECCCHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH Q ss_conf 615756897899999-----------999999999975100158564399997313774100732687187 Q gi|254780201|r 55 SKDVHFQELSIFESF-----------IFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNS 114 (394) Q Consensus 55 ~~~~~~~tP~~f~~~-----------~~wl~~~l~~~~~~~~~~~~~~ivfinaWNEEG~yLePD~~~G~~ 114 (394) ...++..||+.|++. ++|..+.+. ...+.+|++|=..=-|+|..|-||.+|... T Consensus 111 ~~~~v~ETpe~Y~~~~~Pyi~~~~~~l~WV~nIL~------~~~E~e~viy~d~d~~~GFvllpD~kWd~~ 175 (301) T 3bl9_A 111 DLRLIRETGDDYRNITLPHLESQSLSIQWVYNILD------KKAEADRIVFENPDPSDGFVLIPDLKWNQQ 175 (301) T ss_dssp CEEEEEECHHHHHHTHHHHHHTCCCCCHHHHHHHT------TSSSGGGCCEEECCTTTCEEEEECTTCCSS T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHH------CCCCCCEEEEECCCCCCCEEECCCCCCCCC T ss_conf 55999679999998752576556764158999750------776543269846998888798255675887 No 8 >2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} Probab=40.16 E-value=17 Score=15.53 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=63.8 Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 57568978999999999999999751001585643999973137741007326871875599999973026642024678 Q gi|254780201|r 57 DVHFQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDR 136 (394) Q Consensus 57 ~~~~~tP~~f~~~~~wl~~~l~~~~~~~~~~~~~~ivfinaWNEEG~yLePD~~~G~~yL~a~~~al~~~~~~~~~~~~~ 136 (394) +....+-+.+..|+| +-++++.. . +-+=+.||--.+=. -.-.+.-.|+|++- T Consensus 8 vivsv~~e~~~nffR--~~~kD~R~---~---GskK~iIN~is~i~---------~~e~v~~aREAlLd----------- 59 (126) T 2rbg_A 8 TLISVNNDNFENYFR--KIFLDVRS---S---GSKKTTINVFTEIQ---------YQELVTLIREALLE----------- 59 (126) T ss_dssp EEEECCGGGHHHHHH--HHHHHHHH---H---TCSEEEEEEECSSC---------HHHHHHHTHHHHHH----------- T ss_pred EEEECCHHHHHHHHH--HHHHHHHH---C---CCCEEEEEEECCCC---------HHHHHHHHHHHHHH----------- T ss_conf 998546665799999--99999985---5---88528999854686---------79999999999884----------- Q ss_pred CCCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 22101100000147389999416778999999997089981499971765289999997117873 Q gi|254780201|r 137 PSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSA 201 (394) Q Consensus 137 p~~~~~~~~~~k~kIAVvlHlyY~DLl~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a 201 (394) ...+++-+|+|-+|-.+.+++.+...... -+.|-++++++...+++...+|++ T Consensus 60 -----------NIDlG~ely~WK~eeVd~m~~k~~~~~vd-GlliYCDd~nk~~m~Ki~~~~Pns 112 (126) T 2rbg_A 60 -----------NIDIGYELFLWKKNEVDIFLKNLEKSEVD-GLLVYCDDENKVFMSKIVDNLPTA 112 (126) T ss_dssp -----------TTTSEEEEEEECGGGHHHHHHHHTTCCCC-EEEEEECGGGHHHHHHHHHTSCHH T ss_pred -----------CCCCCEEEEEECHHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHCCHH T ss_conf -----------34545289986789999999999982777-269996798702899998856378 No 9 >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Probab=37.79 E-value=18 Score=15.30 Aligned_cols=154 Identities=8% Similarity=-0.046 Sum_probs=69.3 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC-CCHH---HHHHHHHHCCCCCCCCCEEEEECC Q ss_conf 789999999970899814999717652899999971178738999456-6604---799998622100278678999736 Q gi|254780201|r 161 DTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMEN-KGRD---VRPFLYLLELGVFDRYDYLCKIHG 236 (394) Q Consensus 161 DLl~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~N-RGRD---I~PfL~~~~~~~l~~YD~v~klHt 236 (394) -|++-.++.+.....--+++|+|+++.. ....+.+....+...++ -+.+ ..-+..... .....||+||.++. T Consensus 30 pLi~~~i~~~~~s~~~~~Iiv~td~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~iv~l~~ 105 (228) T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDGGLI---AEEAKNFGVEVVLRPAELASDTASSISGVIHALE-TIGSNSGTVTLLQP 105 (228) T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESCHHH---HHHHHHTTCEEEECCC------CHHHHHHHHHHH-HHTCCSEEEEECCT T ss_pred EHHHHHHHHHHHCCCCCEEEEECCCHHH---HHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCCCEEEEEEC T ss_conf 5799999999866997649995782898---8777515851466100003677420234445545-31366657999947 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 87767777644407899999987479989999999997609976898--1687654433234554322138999999974 Q gi|254780201|r 237 KKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMI--GSRRYRRYKRWSFFAKRSEVYRRVIDLAKRA 314 (394) Q Consensus 237 KKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv--~p~~~~~~~~~~~~~~~~~~~~~~~~L~~rl 314 (394) = +| +-+.+.+.+.+..+..+..-.++ .+.... +............. .....-... T Consensus 106 ~-~P--------------------f~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 162 (228) T 1ezi_A 106 T-SP--------------------LRTGAHIREAFSLFDEKIKGSVVSACPMEHH-PLKTLLQINNGEYA-PMRHLSDLE 162 (228) T ss_dssp T-CT--------------------TCCHHHHHHHHTTCCTTTCCCEEEEEECSSC-TTSCEEECC--CEE-ESSCHHHHT T ss_pred C-CC--------------------EECHHHHHHHHHHHHCCCCCEEEEEEECCCC-CHHHEEEECCCCEE-EEECCCCCC T ss_conf 9-97--------------------5514777999999860799879999853458-72106774288355-652144320 Q ss_pred CCCCCCCCCCCCCEEEEEEEHHHHHHH Q ss_conf 899885547737701233209888757 Q gi|254780201|r 315 GFPTKRLHLDFFNGTMFWVKPKCLEPL 341 (394) Q Consensus 315 gi~~~~~~~~FpaGSMFW~R~~AL~pL 341 (394) .-...-...-+..|+++|++.+.+..- T Consensus 163 ~~~q~~~~~~~~~g~~~~~~~~~~~~~ 189 (228) T 1ezi_A 163 QPRQQLPQAFRPNGAIYINDTASLIAN 189 (228) T ss_dssp CCGGGSCCEEEEEEEEEEEEHHHHHHH T ss_pred HHHCCCCCEEEECCEEEEEEHHHHHHC T ss_conf 121267613776024999889999862 No 10 >2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=22.03 E-value=35 Score=13.62 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=23.3 Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 57568978999999999999999751001 Q gi|254780201|r 57 DVHFQELSIFESFIFWLRSFLAFSKYSKL 85 (394) Q Consensus 57 ~~~~~tP~~f~~~~~wl~~~l~~~~~~~~ 85 (394) |-.-++|+-|+.|...|..+++++++.++ T Consensus 3 iqais~~~~F~EFY~rLk~IKdfHrryPn 31 (38) T 2dt7_A 3 LNAISGPNEFAEFYNRLKQIKEFHRKHPN 31 (38) T ss_dssp SSCCCSCCHHHHHHHHHHHHHHHHHSCCS T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 22036886499999999999999983975 No 11 >1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B* Probab=21.66 E-value=35 Score=13.57 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=19.4 Q ss_pred HCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 08998149997176528999999711787389994566 Q gi|254780201|r 172 RLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMENK 209 (394) Q Consensus 172 ~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~NR 209 (394) .++..+||+||+ ..+...+....+++.|.++.|- T Consensus 55 ~~~~~~DlIvst----~~l~~~~~~~~~~~~vi~V~n~ 88 (125) T 1vkr_A 55 NLPPDVDLVITH----RDLTERAMRQVPQAQHISLTNF 88 (125) T ss_dssp CCCTTCSEEEEE----HHHHHHHHHHCTTSEEEEESCT T ss_pred CCCCCCCEEEEC----HHHHHHHHHHCCCCEEEEEECC T ss_conf 079899899987----8998999831999839998327 Done!