RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62] (394 letters) >gnl|CDD|33549 COG3754, RgpF, Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]. Length = 595 Score = 128 bits (324), Expect = 2e-30 Identities = 76/231 (32%), Positives = 105/231 (45%), Gaps = 14/231 (6%) Query: 148 KSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFE-QDVLKYFPS-AQLYV 205 KIA+ +H YY D E + F +DL +T +K E Q L P A + V Sbjct: 292 IQKIAVHLHVYYTDLLDEFLALAENTPFPYDLILTTDTPDKVAEIQRALARKPKNAFVRV 351 Query: 206 MENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSD 265 +EN+GRD+ P L+LL DRYD +C++H KKS + G +WR +LL Sbjct: 352 VENRGRDIGPLLHLLRDLKGDRYDLVCRLHTKKSGQ--ADFWAGELWRHHTIDNLLASRG 409 Query: 266 IAIRIINTFEQNPCLGMIGSRRYRRYK---RWSFFAKRSEVYRRVIDLAKRAGFPTK--R 320 + F NP +G +R ++F R+ V DL + G K R Sbjct: 410 YVTNALEIFADNPSVGADIPPFFRLNYPTEGIAWFENRAA----VADLLRLMGMNVKTDR 465 Query: 321 LHLDFFNGTMFWVKPKCLEPLRNLHL-IGEFEEERNLKDGALEHAVERFFA 370 GTMFW +P+ L PL L L +F E +DG L HA+ER A Sbjct: 466 NTFVAAYGTMFWFRPRALRPLFELELGWNDFPAEPLPQDGHLAHAIERLLA 516 >gnl|CDD|113802 pfam05045, RgpF, Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors. Length = 498 Score = 106 bits (265), Expect = 2e-23 Identities = 74/231 (32%), Positives = 108/231 (46%), Gaps = 16/231 (6%) Query: 150 KIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFE-QDVLKYFP---SAQLYV 205 KIA+ H YY D EI + F +DL +T +K E +++L +A + V Sbjct: 266 KIAVHAHVYYVDMLDEILTAFKNIPFSYDLIITTDTDDKKAEIEEILAKRKGAKNAIVRV 325 Query: 206 MENKGRDVRPFLYLL-ELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFS 264 ++N+GRD+ P L L + V DRYD +C+ H KKS + G ++ L +LL Sbjct: 326 VQNRGRDMSPLLISLKDELVDDRYDLVCRFHTKKS-PQADFWA-GESFKEELIDNLLKPR 383 Query: 265 DIAIRIINTFEQNPCLGM-IGSRRYRRYKRW--SFFAKRSEVYRRVIDLAKRAGFPTKRL 321 A I+ FEQNP +G+ I + RY ++ E+ LA+R G K Sbjct: 384 GYADNILAMFEQNPSIGLVIPDIVHIRYPTIGNAWNENAPEM----NKLARRMGIKKKFD 439 Query: 322 HLDFFN--GTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHAVERFFA 370 GTMFW +P+ L+ L L E L D +L HA+ER A Sbjct: 440 DNTPVASYGTMFWFRPEALKKLFELEWKWEDFPNEPLPDNSLLHAIERLLA 490 >gnl|CDD|30919 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]. Length = 740 Score = 29.6 bits (66), Expect = 1.6 Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 275 EQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRA 314 E+NP LG G+ RY FA + V ++ Sbjct: 556 EENPMLGFRGASRYPEIYYREAFALECRAIKLVEEMGLTN 595 >gnl|CDD|37145 KOG1934, KOG1934, KOG1934, Predicted membrane protein (patched superfamily) [General function prediction only]. Length = 868 Score = 29.1 bits (65), Expect = 2.3 Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 9/81 (11%) Query: 67 ESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRF---------MSNSRMP 117 ES FWLR +L F FY E F S+ Sbjct: 562 ESTKFWLREYLNFLFEKNAELEDNDDEFYDHLYESFLKSPEFSFWRNDIVFDNKSDEETI 621 Query: 118 FDSEKFLYVKELFEGWNDRPS 138 + +F WN+R Sbjct: 622 IFAFRFTIGLTNLTKWNERTR 642 >gnl|CDD|37563 KOG2352, KOG2352, KOG2352, Predicted spermine/spermidine synthase [Amino acid transport and metabolism]. Length = 482 Score = 27.6 bits (61), Expect = 6.8 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%) Query: 60 FQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMS 112 F + ++ F R F Y L S I Y S + K L+L S Sbjct: 10 FGSVVYWDKR-FQPRGSDPFEWYGALLSLSGSIMKYLSPSDFK-ILQLGCGNS 60 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 27.1 bits (60), Expect = 9.0 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 12/81 (14%) Query: 7 LKSKLGKIENLLLRLD-VEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHFQELSI 65 LK+ GK++N L + G+ ++P Y + +DVHF EL++ Sbjct: 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAY-----------NSEQDVHFPELTV 206 Query: 66 FESFIFWLRSFLAFSKYSKLS 86 E+ F R S+Y ++S Sbjct: 207 RETLDFAARCKGPGSRYDEVS 227 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.328 0.143 0.447 Gapped Lambda K H 0.267 0.0658 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,271,824 Number of extensions: 298958 Number of successful extensions: 833 Number of sequences better than 10.0: 1 Number of HSP's gapped: 825 Number of HSP's successfully gapped: 21 Length of query: 394 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 298 Effective length of database: 4,189,273 Effective search space: 1248403354 Effective search space used: 1248403354 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 58 (26.3 bits)