RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780201|ref|YP_003064614.1| hypothetical protein
CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)



>gnl|CDD|33549 COG3754, RgpF, Lipopolysaccharide biosynthesis protein [Cell
           envelope biogenesis, outer membrane].
          Length = 595

 Score =  128 bits (324), Expect = 2e-30
 Identities = 76/231 (32%), Positives = 105/231 (45%), Gaps = 14/231 (6%)

Query: 148 KSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFE-QDVLKYFPS-AQLYV 205
             KIA+ +H YY D   E   +     F +DL +T    +K  E Q  L   P  A + V
Sbjct: 292 IQKIAVHLHVYYTDLLDEFLALAENTPFPYDLILTTDTPDKVAEIQRALARKPKNAFVRV 351

Query: 206 MENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSD 265
           +EN+GRD+ P L+LL     DRYD +C++H KKS +       G +WR     +LL    
Sbjct: 352 VENRGRDIGPLLHLLRDLKGDRYDLVCRLHTKKSGQ--ADFWAGELWRHHTIDNLLASRG 409

Query: 266 IAIRIINTFEQNPCLGMIGSRRYRRYK---RWSFFAKRSEVYRRVIDLAKRAGFPTK--R 320
                +  F  NP +G      +R        ++F  R+     V DL +  G   K  R
Sbjct: 410 YVTNALEIFADNPSVGADIPPFFRLNYPTEGIAWFENRAA----VADLLRLMGMNVKTDR 465

Query: 321 LHLDFFNGTMFWVKPKCLEPLRNLHL-IGEFEEERNLKDGALEHAVERFFA 370
                  GTMFW +P+ L PL  L L   +F  E   +DG L HA+ER  A
Sbjct: 466 NTFVAAYGTMFWFRPRALRPLFELELGWNDFPAEPLPQDGHLAHAIERLLA 516


>gnl|CDD|113802 pfam05045, RgpF, Rhamnan synthesis protein F.  This family consists
           of a group of proteins which are related to the
           Streptococcus rhamnose-glucose polysaccharide assembly
           protein (RgpF). Rhamnan backbones are found in several O
           polysaccharides of phytopathogenic bacteria and are
           regarded as pathogenic factors.
          Length = 498

 Score =  106 bits (265), Expect = 2e-23
 Identities = 74/231 (32%), Positives = 108/231 (46%), Gaps = 16/231 (6%)

Query: 150 KIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFE-QDVLKYFP---SAQLYV 205
           KIA+  H YY D   EI      + F +DL +T    +K  E +++L       +A + V
Sbjct: 266 KIAVHAHVYYVDMLDEILTAFKNIPFSYDLIITTDTDDKKAEIEEILAKRKGAKNAIVRV 325

Query: 206 MENKGRDVRPFLYLL-ELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFS 264
           ++N+GRD+ P L  L +  V DRYD +C+ H KKS  +      G  ++  L  +LL   
Sbjct: 326 VQNRGRDMSPLLISLKDELVDDRYDLVCRFHTKKS-PQADFWA-GESFKEELIDNLLKPR 383

Query: 265 DIAIRIINTFEQNPCLGM-IGSRRYRRYKRW--SFFAKRSEVYRRVIDLAKRAGFPTKRL 321
             A  I+  FEQNP +G+ I    + RY     ++     E+      LA+R G   K  
Sbjct: 384 GYADNILAMFEQNPSIGLVIPDIVHIRYPTIGNAWNENAPEM----NKLARRMGIKKKFD 439

Query: 322 HLDFFN--GTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHAVERFFA 370
                   GTMFW +P+ L+ L  L    E      L D +L HA+ER  A
Sbjct: 440 DNTPVASYGTMFWFRPEALKKLFELEWKWEDFPNEPLPDNSLLHAIERLLA 490


>gnl|CDD|30919 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate
           dikinase [Carbohydrate transport and metabolism].
          Length = 740

 Score = 29.6 bits (66), Expect = 1.6
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 275 EQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRA 314
           E+NP LG  G+ RY        FA      + V ++    
Sbjct: 556 EENPMLGFRGASRYPEIYYREAFALECRAIKLVEEMGLTN 595


>gnl|CDD|37145 KOG1934, KOG1934, KOG1934, Predicted membrane protein (patched
           superfamily) [General function prediction only].
          Length = 868

 Score = 29.1 bits (65), Expect = 2.3
 Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 9/81 (11%)

Query: 67  ESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRF---------MSNSRMP 117
           ES  FWLR +L F              FY    E         F          S+    
Sbjct: 562 ESTKFWLREYLNFLFEKNAELEDNDDEFYDHLYESFLKSPEFSFWRNDIVFDNKSDEETI 621

Query: 118 FDSEKFLYVKELFEGWNDRPS 138
             + +F         WN+R  
Sbjct: 622 IFAFRFTIGLTNLTKWNERTR 642


>gnl|CDD|37563 KOG2352, KOG2352, KOG2352, Predicted spermine/spermidine synthase
           [Amino acid transport and metabolism].
          Length = 482

 Score = 27.6 bits (61), Expect = 6.8
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 60  FQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMS 112
           F  +  ++   F  R    F  Y  L   S  I  Y S  + K  L+L    S
Sbjct: 10  FGSVVYWDKR-FQPRGSDPFEWYGALLSLSGSIMKYLSPSDFK-ILQLGCGNS 60


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
           (PDR1-15), ABC superfamily [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 1391

 Score = 27.1 bits (60), Expect = 9.0
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 7   LKSKLGKIENLLLRLD-VEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHFQELSI 65
           LK+  GK++N L     +   G+    ++P     Y            + +DVHF EL++
Sbjct: 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAY-----------NSEQDVHFPELTV 206

Query: 66  FESFIFWLRSFLAFSKYSKLS 86
            E+  F  R     S+Y ++S
Sbjct: 207 RETLDFAARCKGPGSRYDEVS 227


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.328    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,271,824
Number of extensions: 298958
Number of successful extensions: 833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 21
Length of query: 394
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,189,273
Effective search space: 1248403354
Effective search space used: 1248403354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.3 bits)