RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780201|ref|YP_003064614.1| hypothetical protein
CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)



>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
           aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus}
           (A:66-188)
          Length = 123

 Score = 28.3 bits (63), Expect = 1.6
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 322 HLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHAVERFFACSVRYTEFSIE 381
           H   F   M        +  R  HL+ E  EE   +        E      V+    + E
Sbjct: 14  HEATFADPM-VDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPE 72


>1tvc_A Methane monooxygenase component C, methane monooxygenase;
           FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
           {Methylococcus capsulatus} (A:114-250)
          Length = 137

 Score = 26.3 bits (57), Expect = 6.0
 Identities = 13/121 (10%), Positives = 34/121 (28%), Gaps = 16/121 (13%)

Query: 215 PFLYLL-ELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINT 273
           P + ++ ++  +   +      G  ++ E ++  E  +         L            
Sbjct: 18  PVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDE--LKSLERSMRNLTVKACVWH---- 71

Query: 274 FEQNPCLGMIGSRRYRRYKRWSFFAKRSEVY--------RRVIDLAKRAGFPTKRLHLDF 325
                  G  GS      +         ++Y            +L +  G P +++  + 
Sbjct: 72  -PSGDWEGEQGSPIDALREDLESSDANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFEK 130

Query: 326 F 326
           F
Sbjct: 131 F 131


>3gbt_A Gluconate kinase; LBA0354, FGGY kinase family, carbohydrate
           metabolic process, transferase, structural genomics,
           PSI-2; 2.40A {Lactobacillus acidophilus ncfm}
           (A:238-504)
          Length = 267

 Score = 26.5 bits (57), Expect = 6.2
 Identities = 5/48 (10%), Positives = 13/48 (27%), Gaps = 2/48 (4%)

Query: 267 AIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRA 314
             +    +  NP       + +  Y         S  Y +  ++ +  
Sbjct: 217 FAQADKVYFPNPKEAATYQKLFPLYCEIRNALAAS--YGKFSNINEGH 262


>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome,
           structural genomics, PSI-2 protein structure initiative;
           2.30A {Vibrio paracholerae} (A:)
          Length = 192

 Score = 26.2 bits (57), Expect = 8.2
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 161 DTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQ 202
           D WIEI  IL  L  D  + VTV+   KD+E       P  Q
Sbjct: 26  DKWIEIEEILSGLIGDLTIAVTVL---KDYEGKAFLREPQHQ 64


>3l70_H Mitochondrial ubiquinol-cytochrome C reductase 11 kDa
           protein, complex III subunit...; cytochrome BC1,
           membrane protein, heme protein, rieske iron sulfur
           protein; HET: PEE HEM JZV UQ CDL HEC BOG; 2.75A {Gallus
           gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H*
           3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* (H:)
          Length = 77

 Score = 25.9 bits (57), Expect = 9.7
 Identities = 11/43 (25%), Positives = 13/43 (30%)

Query: 352 EERNLKDGALEHAVERFFACSVRYTEFSIESVDCVAEYERLLH 394
            E   +      A ER   C  R +  S     C  E    LH
Sbjct: 20  REHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLH 62


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,265,390
Number of extensions: 157446
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 16
Length of query: 394
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 304
Effective length of database: 1,913,599
Effective search space: 581734096
Effective search space used: 581734096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.1 bits)