RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780201|ref|YP_003064614.1| hypothetical protein
CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)



>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
           {Alcaligenes eutrophus [TaxId: 106590]}
          Length = 142

 Score = 27.6 bits (60), Expect = 1.7
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 13/121 (10%)

Query: 215 PFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGI-IWRRWLFFDLLGFSDIAIRIINT 273
           P + +L++ +      +  +HG ++              + +   DL  F D        
Sbjct: 19  PMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQP----LP 74

Query: 274 FEQNPCLGMIGSRRYRRYKRWSFFAKRSEVY--------RRVIDLAKRAGFPTKRLHLDF 325
            +              +    S     ++ Y        R   D  K  G    R+H + 
Sbjct: 75  EDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYEV 134

Query: 326 F 326
           F
Sbjct: 135 F 135


>d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase,
           C-terminal domain {Clostridium symbiosum [TaxId: 1512]}
          Length = 364

 Score = 27.1 bits (59), Expect = 2.5
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 261 LGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFP 317
           L  +++  ++    E NP +G  G R    Y   +    R+      I++ +  G  
Sbjct: 134 LTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAV-MEAAIEVKEETGID 189


>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 26.5 bits (57), Expect = 3.9
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 185 EANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLL 220
           +  +  EQ + ++FP   +  +   G+ +R  L +L
Sbjct: 7   KVKERIEQILSQFFPEQIMKDLPLYGKMLRVRLSIL 42


>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1
           complex (Ubiquinol-cytochrome c reductase) {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 66

 Score = 25.8 bits (57), Expect = 5.8
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 363 HAVERFFACSVRYTEFSIESVDCVAEYERLLH 394
            A ER   C  R +  S    DC  E    LH
Sbjct: 20  KARERLELCDERVSSRSQTEEDCTEELLDFLH 51


>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 167

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 14/127 (11%), Positives = 37/127 (29%)

Query: 240 QREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAK 299
            +E        +   ++   +         +    ++   + +    +     R     +
Sbjct: 29  DKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITE 88

Query: 300 RSEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDG 359
           + EV    + LA  A             G    +        ++++ IG+  E   +  G
Sbjct: 89  KGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAG 148

Query: 360 ALEHAVE 366
             + A+E
Sbjct: 149 TAKAAME 155


>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 25.9 bits (57), Expect = 6.1
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 19/89 (21%)

Query: 78  AFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDRP 137
           A   Y K  +P+     YG   + +  +     + + +  F  + F         WN R 
Sbjct: 121 ALRAYVKDHYPNGFCTVYGKSIDGQQTIIAC--IESHQ--FQPKNF---------WNGRW 167

Query: 138 SS-----PKKSGLTIKSKIAIVVHCYYQD 161
            S            + + + I VH YY+D
Sbjct: 168 RSEWKFTITPPTAQVAAVLKIQVH-YYED 195


>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
           {Acinetobacter sp. [TaxId: 472]}
          Length = 133

 Score = 25.2 bits (54), Expect = 9.2
 Identities = 12/112 (10%), Positives = 30/112 (26%)

Query: 215 PFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTF 274
           PFL +L++      ++  ++    +Q      +E +   +         + +A       
Sbjct: 19  PFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAESQHE 78

Query: 275 EQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFPTKRLHLDFF 326
            +    G I        +   +      +   V       G        + F
Sbjct: 79  RKGYVTGHIEYDWLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEKF 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,611,950
Number of extensions: 80210
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 13
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.9 bits)