RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62] (394 letters) >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142 Score = 27.6 bits (60), Expect = 1.7 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 13/121 (10%) Query: 215 PFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGI-IWRRWLFFDLLGFSDIAIRIINT 273 P + +L++ + + +HG ++ + + DL F D Sbjct: 19 PMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQP----LP 74 Query: 274 FEQNPCLGMIGSRRYRRYKRWSFFAKRSEVY--------RRVIDLAKRAGFPTKRLHLDF 325 + + S ++ Y R D K G R+H + Sbjct: 75 EDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYEV 134 Query: 326 F 326 F Sbjct: 135 F 135 >d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} Length = 364 Score = 27.1 bits (59), Expect = 2.5 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 261 LGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFP 317 L +++ ++ E NP +G G R Y + R+ I++ + G Sbjct: 134 LTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAV-MEAAIEVKEETGID 189 >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 Score = 26.5 bits (57), Expect = 3.9 Identities = 8/36 (22%), Positives = 18/36 (50%) Query: 185 EANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLL 220 + + EQ + ++FP + + G+ +R L +L Sbjct: 7 KVKERIEQILSQFFPEQIMKDLPLYGKMLRVRLSIL 42 >d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 66 Score = 25.8 bits (57), Expect = 5.8 Identities = 11/32 (34%), Positives = 12/32 (37%) Query: 363 HAVERFFACSVRYTEFSIESVDCVAEYERLLH 394 A ER C R + S DC E LH Sbjct: 20 KARERLELCDERVSSRSQTEEDCTEELLDFLH 51 >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 Score = 25.8 bits (55), Expect = 5.8 Identities = 14/127 (11%), Positives = 37/127 (29%) Query: 240 QREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAK 299 +E + ++ + + ++ + + + R + Sbjct: 29 DKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITE 88 Query: 300 RSEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDG 359 + EV + LA A G + ++++ IG+ E + G Sbjct: 89 KGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAG 148 Query: 360 ALEHAVE 366 + A+E Sbjct: 149 TAKAAME 155 >d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Length = 275 Score = 25.9 bits (57), Expect = 6.1 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 19/89 (21%) Query: 78 AFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDRP 137 A Y K +P+ YG + + + + + + F + F WN R Sbjct: 121 ALRAYVKDHYPNGFCTVYGKSIDGQQTIIAC--IESHQ--FQPKNF---------WNGRW 167 Query: 138 SS-----PKKSGLTIKSKIAIVVHCYYQD 161 S + + + I VH YY+D Sbjct: 168 RSEWKFTITPPTAQVAAVLKIQVH-YYED 195 >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133 Score = 25.2 bits (54), Expect = 9.2 Identities = 12/112 (10%), Positives = 30/112 (26%) Query: 215 PFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTF 274 PFL +L++ ++ ++ +Q +E + + + +A Sbjct: 19 PFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAESQHE 78 Query: 275 EQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFPTKRLHLDFF 326 + G I + + + V G + F Sbjct: 79 RKGYVTGHIEYDWLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEKF 130 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.328 0.143 0.447 Gapped Lambda K H 0.267 0.0587 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,611,950 Number of extensions: 80210 Number of successful extensions: 281 Number of sequences better than 10.0: 1 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 13 Length of query: 394 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 307 Effective length of database: 1,213,086 Effective search space: 372417402 Effective search space used: 372417402 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 54 (24.9 bits)