BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780201|ref|YP_003064614.1| hypothetical protein
CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 394

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/394 (100%), Positives = 394/394 (100%)

Query: 1   MYKVFRLKSKLGKIENLLLRLDVEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHF 60
           MYKVFRLKSKLGKIENLLLRLDVEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHF
Sbjct: 1   MYKVFRLKSKLGKIENLLLRLDVEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHF 60

Query: 61  QELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDS 120
           QELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDS
Sbjct: 61  QELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDS 120

Query: 121 EKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLF 180
           EKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLF
Sbjct: 121 EKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLF 180

Query: 181 VTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQ 240
           VTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQ
Sbjct: 181 VTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQ 240

Query: 241 REGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKR 300
           REGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKR
Sbjct: 241 REGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKR 300

Query: 301 SEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGA 360
           SEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGA
Sbjct: 301 SEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGA 360

Query: 361 LEHAVERFFACSVRYTEFSIESVDCVAEYERLLH 394
           LEHAVERFFACSVRYTEFSIESVDCVAEYERLLH
Sbjct: 361 LEHAVERFFACSVRYTEFSIESVDCVAEYERLLH 394


>gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 365

 Score =  268 bits (686), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 146/356 (41%), Positives = 212/356 (59%), Gaps = 4/356 (1%)

Query: 40  GYYVLWSFSPKQRITSKDVHFQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRK 99
           GY++  S        S   + ++++++  F FW  + L + +  KL +    +  YGSR 
Sbjct: 9   GYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWT-LFYKRSKKLCYDENYVVAYGSRS 67

Query: 100 EQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYY 159
            +K F + N +M    + FD ++  +  +L  GW + P+  K   + IK+KIAIVVH YY
Sbjct: 68  GKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGW-ESPAMGKVMQIAIKAKIAIVVHLYY 126

Query: 160 QDTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYL 219
            D WIEI+++L  L+  FDL VT+V  +   + ++LK FP+A++++MEN GRDV PFL L
Sbjct: 127 IDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHGRDVLPFLIL 186

Query: 220 LELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPC 279
           LE      YDY+CKIHGKKS+R+GY   EG +WRRWLF+DLLG   +  +II TF+ +  
Sbjct: 187 LETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRD 246

Query: 280 LGMIGSRRYRRYKRWSFFAKRSEVYRRVI-DLAKRAGFPTKRLHLDFFNGTMFWVKPKCL 338
           +GMIGSR YR   ++  +       R +I  LA R G   +   LDFF GTMFWV+ + L
Sbjct: 247 IGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEAL 306

Query: 339 EPLRNLHLIGEFEEE-RNLKDGALEHAVERFFACSVRYTEFSIESVDCVAEYERLL 393
           +P++NL L   FE +     DG +EHAVER F+ SV+   F I  VDC+  Y + L
Sbjct: 307 DPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYRKSL 362


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 26.6 bits (57), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 296 FFAKRSEVYRRVIDLAKRAGFPTKRLHLDFFNGTM 330
             A R E+  R++   K  G PT  +H    +G M
Sbjct: 6   LIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40


>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 23.5 bits (49), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 70  IFWLRSFLAFSKYSKLSFPSCRIFFYG----SRKEQKA 103
           +  LR +++FS   ++  P  ++F YG    S +E+K+
Sbjct: 298 VLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS 335


>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 392

 Score = 23.1 bits (48), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 363 HAVERFFACSVRYTEFSIESVDCVAEYERLLH 394
           H +   FA  V +T    ESV+C  +  R  H
Sbjct: 82  HLIHSTFADRVFFTNSGAESVECAIKTARRYH 113


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.143    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,057
Number of Sequences: 1233
Number of extensions: 11776
Number of successful extensions: 41
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 6
length of query: 394
length of database: 328,796
effective HSP length: 76
effective length of query: 318
effective length of database: 235,088
effective search space: 74757984
effective search space used: 74757984
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 39 (19.6 bits)