HHsearch alignment for GI: 254780202 and conserved domain: TIGR00048

>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..

Probab=96.57  E-value=0.0065  Score=40.55  Aligned_cols=79  Identities=32%  Similarity=0.574  Sum_probs=51.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----HHH---HHCCCCCCCEEEEEC-CCCCCC--C
Q ss_conf             898887555333323688887757523258886607899999999----987---521667873899807-720000--3
Q gi|254780202|r   30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI----EEQ---WITGEKEGRYCVLTG-GEPLLQ--V   99 (211)
Q Consensus        30 ~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i----~~~---~~~~~~~~~~VviTG-GEPllq--~   99 (211)
T Consensus       129 vGC~~-----------~C~FC~T~----~gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEPL~Nl~~  193 (378)
T TIGR00048       129 VGCAL-----------GCTFCATA----KGGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEPLLNLNE  193 (378)
T ss_pred             CCCCC-----------CCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHH
T ss_conf             35422-----------55103345----7875214510338999999999834557776654047887467871011799


Q ss_pred             CCHHHHHHH-HCCC-----EEEEECCCCCC
Q ss_conf             517899998-6898-----79997278886
Q gi|254780202|r  100 DVPLIQALN-KRGF-----EIAVETNGTIE  123 (211)
Q Consensus       100 l~~L~~~l~-~~g~-----~v~IETnGt~~  123 (211)
T Consensus       194 vv~a~ei~n~~~g~~is~r~~T~STsGv~~  223 (378)
T TIGR00048       194 VVKALEILNDDVGLGISKRRITISTSGVVP  223 (378)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf             999999874222036567337887357145