HHsearch alignment for GI: 254780202 and conserved domain: TIGR01290
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=96.23 E-value=0.027 Score=36.32 Aligned_cols=101 Identities=19% Similarity=0.408 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCC---
Q ss_conf 8988875553333236888877575----23258886607899999999987521667873899807-720000351---
Q gi|254780202|r 30 SGCNLWSGREQDRLSAQCRFCDTDF----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV--- 101 (211)
Q Consensus 30 ~GCnL~c~~~~~~~~~~C~~CDT~y----~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTG-GEPllq~l~--- 101 (211)
T Consensus 32 pACNi-----------QCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~-i~QLSVvGIAGPGDpLan~~~Tf~ 99 (461)
T TIGR01290 32 PACNI-----------QCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAE-IPQLSVVGIAGPGDPLANIKKTFQ 99 (461)
T ss_pred CCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHH
T ss_conf 43345-----------545568641667888876201346848999999999850-675315632578862457500089
Q ss_pred HHHHHHHHC-CCEEEEECCCC-CC------CCCCCEEEEE-----CCCCCCCCC
Q ss_conf 789999868-98799972788-86------6788507984-----167774100
Q gi|254780202|r 102 PLIQALNKR-GFEIAVETNGT-IE------PPQGIDWICV-----SPKAGCDLK 142 (211)
Q Consensus 102 ~L~~~l~~~-g~~v~IETnGt-~~------~~~~~d~it~-----SPK~~~~~~ 142 (211)
T Consensus 100 Tl~~v~~~~PDvklCLSTNGL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IY 153 (461)
T TIGR01290 100 TLELVAREVPDVKLCLSTNGLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIY 153 (461)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEEC
T ss_conf 999998517821420012656313465246423888179883140635510306