HHsearch alignment for GI: 254780202 and conserved domain: TIGR02494
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=99.66 E-value=3.9e-16 Score=130.22 Aligned_cols=134 Identities=23% Similarity=0.210 Sum_probs=82.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCC------CCCCCEEE
Q ss_conf 8866078999999999875216678738998077200003--517899998689879997278886------67885079
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE------PPQGIDWI 131 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~------~~~~~d~i 131 (211)
T Consensus 105 ~~G~~~tV~ev~~~~~~D~~fY~~SGGGvTlSGGEPl~Q~eF~~~LL~~c~~~gihTAvET~gft~~~~~~~~~~~~DLf 184 (305)
T TIGR02494 105 IVGKEMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLKACRERGIHTAVETSGFTPWETIEKVLPYVDLF 184 (305)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 02451488999999986556665139906734871140158999999999758994676055688889999888877699
Q ss_pred EECCCCCCCCCCCCH--HHHHHHHHHCCCCHHHHCCC-C-CCEEEECCCCC--CCCHHHHHHHHHHHHHC
Q ss_conf 841677741001212--35666530127685785377-8-57799824884--24688899999999967
Q gi|254780202|r 132 CVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGF-D-FERFSLQPMDG--PFLEENTNLAISYCFQN 195 (211)
Q Consensus 132 t~SPK~~~~~~~~~~--~ElK~V~~~~~~~~~~~~~~-~-~~~~~LqP~~~--~~~~~~~~~~i~~~~~~ 195 (211)
T Consensus 185 L~DiK~~D~~~H~~~tG~~N~~IL~NL--~~L~~~~~~GG~~v~iR~PvIpG~Nds~~~i~a~~~f~~~~ 252 (305)
T TIGR02494 185 LYDIKHLDDERHKEVTGVDNELILENL--EALLAAGKDGGKNVVIRIPVIPGFNDSEENIEAIAEFLRKL 252 (305)
T ss_pred HHHHHHCCCHHHHHHCCCCHHHHHHHH--HHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 872641180120553389837899999--99997178899558998720489898989999999999985