HHsearch alignment for GI: 254780202 and conserved domain: TIGR03278
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=95.70 E-value=0.039 Score=35.28 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCC-CCHHHHHHHHCCCEEEE-
Q ss_conf 333236888877575232588866078999999999875216678738998077-200003-51789999868987999-
Q gi|254780202|r 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQV-DVPLIQALNKRGFEIAV- 116 (211)
Q Consensus 40 ~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG-EPllq~-l~~L~~~l~~~g~~v~I- 116 (211)
T Consensus 32 C~pf~~GCDyCt~--~-V~E~~~~F~pl~~v~~~v~~~L~f~~~~~~kitISgGGD~ScYP~l~eL~~~l~~~~lpiHLG 108 (404)
T TIGR03278 32 CPPGTKGCDYCTR--S-VWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLG 108 (404)
T ss_pred CCCCCCCCCHHHH--H-HHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf 8998878611314--3-786548976979999999986345677722899807988441631999999998669835741
Q ss_pred ECCCCC
Q ss_conf 727888
Q gi|254780202|r 117 ETNGTI 122 (211)
Q Consensus 117 ETnGt~ 122 (211)
T Consensus 109 YTSGKG 114 (404)
T TIGR03278 109 YTSGKG 114 (404)
T ss_pred CCCCCC
T ss_conf 237889