HHsearch alignment for GI: 254780202 and conserved domain: TIGR03470

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.18  E-value=6.1e-11  Score=95.02  Aligned_cols=77  Identities=23%  Similarity=0.318  Sum_probs=61.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHH
Q ss_conf             68988875553333236888877575232588866078999999999875216678738998077200003-51789999
Q gi|254780202|r   29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQAL  107 (211)
Q Consensus        29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l  107 (211)
T Consensus        35 t~rCNL-----------~C~~C~~-i~~~~~~l~~~Ls~ee~~~~~~e~------Gap~V~itGGEPLLr~dl~eIv~~a   96 (318)
T TIGR03470        35 LFRCNL-----------ACAGCGK-IQYPAEILKQRLSVEECLRAVDEC------GAPVVSIPGGEPLLHPEIDEIVRGL   96 (318)
T ss_pred             CCCCCC-----------CCCCCCC-CCCCCHHHHCCCCHHHHHHHHHHC------CCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf             132267-----------7889974-136764654438999999999984------9978995188745564799999999


Q ss_pred             HHCCCEEEEECCCCCC
Q ss_conf             8689879997278886
Q gi|254780202|r  108 NKRGFEIAVETNGTIE  123 (211)
Q Consensus       108 ~~~g~~v~IETnGt~~  123 (211)
T Consensus        97 ~~~g~~v~l~TNG~Ll  112 (318)
T TIGR03470        97 VARKKFVYLCTNALLL  112 (318)
T ss_pred             HHCCCEEEEECCHHHH
T ss_conf             9759979997755200