HHsearch alignment for GI: 254780202 and conserved domain: cd01335
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=97.93 E-value=3.4e-05 Score=56.02 Aligned_cols=80 Identities=38% Similarity=0.645 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHH
Q ss_conf 68988875553333236888877575232588866078999999999875216678738998077200003-51789999
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQAL 107 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l 107 (211)
T Consensus 4 srGC~~-----------~C~fC~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~l~~~ 68 (204)
T cd01335 4 TRGCNL-----------NCGFCSNPASK-GRGPESPPEIEEILDIVLEAK---ERGVEVVILTGGEPLLYPELAELLRRL 68 (204)
T ss_pred CCCCCC-----------CCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH---HCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 637385-----------69879987547-987566788999999999998---759869997246766665321013545
Q ss_pred HHC--CCEEEEECCCCCC
Q ss_conf 868--9879997278886
Q gi|254780202|r 108 NKR--GFEIAVETNGTIE 123 (211)
Q Consensus 108 ~~~--g~~v~IETnGt~~ 123 (211)
T Consensus 69 ~~~~~~~~i~~~t~~~~~ 86 (204)
T cd01335 69 KKELPGFEISIETNGTLL 86 (204)
T ss_pred HHCCCCCEEEEEECCCCC
T ss_conf 530687179998336547