Query gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 211
No_of_seqs 111 out of 1224
Neff 7.0
Searched_HMMs 39220
Date Mon May 23 13:00:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780202.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03365 Bsubt_queE 7-cyano-7 100.0 0 0 349.1 14.4 193 2-208 1-231 (238)
2 COG0602 NrdG Organic radical a 100.0 4.9E-44 0 319.6 14.2 193 1-211 1-212 (212)
3 TIGR02493 PFLA pyruvate format 99.8 2E-19 5E-24 152.6 11.9 171 7-197 5-195 (243)
4 PRK11145 pflA pyruvate formate 99.8 1.2E-18 3E-23 147.4 11.2 172 5-196 6-192 (246)
5 TIGR02495 NrdG2 anaerobic ribo 99.7 3.6E-17 9.1E-22 137.3 8.9 172 19-205 13-219 (220)
6 TIGR02494 PFLE_PFLC glycyl-rad 99.7 3.9E-16 1E-20 130.2 9.0 134 60-195 105-252 (305)
7 COG1180 PflA Pyruvate-formate 99.5 1.2E-13 3E-18 113.4 10.9 115 7-141 24-148 (260)
8 PRK05301 pyrroloquinoline quin 99.3 1.5E-10 3.9E-15 92.3 11.8 90 29-135 24-123 (375)
9 PRK10076 pyruvate formate lyas 99.2 7.1E-11 1.8E-15 94.6 8.9 133 60-195 14-157 (213)
10 TIGR03470 HpnH hopanoid biosyn 99.2 6.1E-11 1.5E-15 95.0 6.8 77 29-123 35-112 (318)
11 TIGR02666 moaA molybdenum cofa 99.1 6.9E-10 1.8E-14 87.8 10.6 161 21-201 6-193 (346)
12 TIGR02668 moaA_archaeal probab 99.1 4.9E-10 1.3E-14 88.9 7.8 163 21-202 6-193 (324)
13 PRK13361 molybdenum cofactor b 99.1 2.9E-09 7.5E-14 83.6 10.7 102 20-136 9-123 (329)
14 PRK00164 moaA molybdenum cofac 99.0 2E-09 5E-14 84.8 9.7 100 20-135 12-128 (334)
15 COG2896 MoaA Molybdenum cofact 99.0 1.2E-08 3.1E-13 79.4 11.2 124 20-159 6-146 (322)
16 PRK11121 nrdG anaerobic ribonu 98.9 9.8E-09 2.5E-13 80.0 7.6 96 10-123 9-110 (154)
17 TIGR02491 NrdG anaerobic ribon 98.7 2.5E-08 6.3E-13 77.3 6.3 83 10-110 8-94 (158)
18 PRK13758 anaerobic sulfatase-m 98.6 2.3E-07 6E-12 70.7 6.9 80 29-123 12-104 (370)
19 COG0535 Predicted Fe-S oxidore 98.5 1.6E-06 4E-11 65.1 9.5 98 22-135 18-126 (347)
20 COG0641 AslB Arylsulfatase reg 98.4 1.2E-06 3.1E-11 65.8 6.8 84 21-123 11-102 (378)
21 pfam04055 Radical_SAM Radical 98.4 3.1E-06 8E-11 63.0 8.8 98 28-140 3-113 (165)
22 TIGR02109 PQQ_syn_pqqE coenzym 98.4 3.5E-07 8.8E-12 69.5 3.7 90 30-135 15-113 (363)
23 COG2100 Predicted Fe-S oxidore 98.3 3.4E-06 8.6E-11 62.8 8.2 169 10-195 84-283 (414)
24 COG0731 Fe-S oxidoreductases [ 98.2 5.4E-06 1.4E-10 61.5 7.5 90 46-135 37-137 (296)
25 PRK13745 anaerobic sulfatase-m 98.2 7E-06 1.8E-10 60.7 7.8 87 24-123 14-113 (412)
26 TIGR02826 RNR_activ_nrdG3 anae 98.2 6E-06 1.5E-10 61.1 6.7 84 27-122 20-113 (165)
27 COG5014 Predicted Fe-S oxidore 98.1 3.3E-06 8.4E-11 62.9 4.5 79 29-123 48-130 (228)
28 COG2108 Uncharacterized conser 98.0 1.3E-05 3.2E-10 58.9 5.3 99 21-135 28-142 (353)
29 cd01335 Radical_SAM Radical SA 97.9 3.4E-05 8.7E-10 56.0 6.6 80 29-123 4-86 (204)
30 COG1313 PflX Uncharacterized F 97.7 0.00038 9.7E-09 48.9 9.3 117 6-140 104-228 (335)
31 PRK13762 tRNA-modifying enzyme 97.7 5.6E-05 1.4E-09 54.6 4.7 38 86-123 130-169 (321)
32 COG1964 Predicted Fe-S oxidore 97.6 0.00017 4.3E-09 51.3 6.0 60 64-123 90-151 (475)
33 COG0820 Predicted Fe-S-cluster 97.1 0.0012 3.2E-08 45.4 5.8 80 29-123 108-200 (349)
34 COG1509 KamA Lysine 2,3-aminom 97.0 0.002 5.2E-08 44.0 5.7 83 22-120 111-199 (369)
35 PRK11194 hypothetical protein; 96.8 0.0048 1.2E-07 41.4 6.2 87 22-123 92-205 (372)
36 KOG2876 consensus 96.7 0.00099 2.5E-08 46.1 2.2 79 29-122 18-100 (323)
37 TIGR00048 TIGR00048 radical SA 96.6 0.0065 1.7E-07 40.5 5.8 79 30-123 129-223 (378)
38 TIGR01290 nifB nitrogenase cof 96.2 0.027 7E-07 36.3 7.4 101 30-142 32-153 (461)
39 TIGR03278 methan_mark_10 putat 95.7 0.039 9.9E-07 35.3 6.2 80 40-122 32-114 (404)
40 PRK05904 coproporphyrinogen II 95.0 0.18 4.7E-06 30.7 7.8 74 45-120 18-98 (353)
41 smart00729 Elp3 Elongator prot 94.9 0.25 6.3E-06 29.8 8.2 83 25-121 4-96 (216)
42 TIGR02026 BchE magnesium-proto 94.4 0.16 4E-06 31.2 6.2 85 21-121 195-282 (506)
43 PRK08599 coproporphyrinogen II 94.4 0.18 4.6E-06 30.8 6.5 74 46-121 14-96 (377)
44 PRK09057 coproporphyrinogen II 94.1 0.16 4.2E-06 31.0 5.9 75 45-120 16-100 (381)
45 PRK09058 coproporphyrinogen II 94.0 0.17 4.3E-06 31.0 5.7 101 8-120 42-153 (447)
46 TIGR03471 HpnJ hopanoid biosyn 94.0 0.37 9.4E-06 28.6 7.4 88 21-122 194-285 (472)
47 COG0635 HemN Coproporphyrinoge 93.3 0.21 5.4E-06 30.3 5.3 86 23-121 35-133 (416)
48 PRK08949 consensus 93.2 0.53 1.3E-05 27.6 7.2 75 45-120 18-102 (378)
49 PRK05799 coproporphyrinogen II 93.1 0.35 8.9E-06 28.8 6.1 73 45-121 15-95 (374)
50 PRK07379 coproporphyrinogen II 93.0 0.67 1.7E-05 26.9 7.4 39 83-121 65-111 (399)
51 PRK05660 coproporphyrinogen II 92.9 0.34 8.6E-06 28.9 5.8 72 45-120 18-102 (378)
52 COG1060 ThiH Thiamine biosynth 92.9 0.24 6.2E-06 29.9 5.0 80 19-109 50-134 (370)
53 PRK08446 coproporphyrinogen II 92.8 0.44 1.1E-05 28.2 6.3 76 45-121 12-95 (351)
54 PRK06582 coproporphyrinogen II 92.8 0.39 9.8E-06 28.5 6.0 75 45-120 23-106 (390)
55 PRK07094 biotin synthase; Prov 92.8 0.94 2.4E-05 25.9 9.0 68 45-116 51-122 (323)
56 PRK08807 consensus 92.1 0.49 1.3E-05 27.8 5.8 74 45-120 20-104 (385)
57 TIGR03551 F420_cofH 7,8-dideme 91.7 0.81 2.1E-05 26.3 6.5 67 46-116 52-121 (343)
58 TIGR01579 MiaB-like-C MiaB-lik 91.5 0.3 7.6E-06 29.3 4.2 80 21-116 208-300 (492)
59 PRK06245 cofG FO synthase subu 91.5 0.47 1.2E-05 27.9 5.1 65 19-94 3-67 (336)
60 PRK08208 coproporphyrinogen II 91.4 0.5 1.3E-05 27.7 5.2 106 2-120 17-142 (436)
61 PRK08207 coproporphyrinogen II 90.9 1.5 3.8E-05 24.5 7.2 88 24-123 174-277 (497)
62 PRK13347 coproporphyrinogen II 90.9 0.88 2.3E-05 26.1 6.0 84 24-120 52-147 (453)
63 PRK08898 coproporphyrinogen II 90.8 0.86 2.2E-05 26.2 5.9 76 45-120 31-116 (393)
64 PRK05628 coproporphyrinogen II 90.7 1 2.6E-05 25.7 6.1 76 45-120 14-103 (376)
65 TIGR00238 TIGR00238 lysine 2,3 90.6 0.41 1E-05 28.4 4.1 93 12-120 121-223 (357)
66 TIGR03550 F420_cofG 7,8-dideme 90.6 0.59 1.5E-05 27.3 4.9 44 46-94 17-61 (322)
67 PRK06294 coproporphyrinogen II 90.4 0.81 2.1E-05 26.3 5.5 85 25-121 9-99 (374)
68 PRK06256 biotin synthase; Vali 90.2 0.48 1.2E-05 27.9 4.2 67 46-116 70-144 (325)
69 COG0621 MiaB 2-methylthioadeni 89.9 1.3 3.4E-05 24.8 6.3 89 19-124 140-240 (437)
70 TIGR00539 hemN_rel putative ox 89.0 0.93 2.4E-05 25.9 4.9 76 45-120 12-101 (371)
71 COG0502 BioB Biotin synthase a 89.0 0.43 1.1E-05 28.2 3.2 75 24-113 53-134 (335)
72 PRK08629 coproporphyrinogen II 88.7 1.8 4.7E-05 23.9 6.2 82 25-120 46-132 (424)
73 PRK07360 FO synthase subunit 2 88.6 1.5 3.8E-05 24.5 5.8 76 20-110 52-141 (375)
74 PRK09249 coproporphyrinogen II 88.4 2.3 5.9E-05 23.2 7.1 87 21-120 49-148 (456)
75 TIGR00089 TIGR00089 RNA modifi 88.3 0.76 1.9E-05 26.5 4.1 103 18-137 148-267 (455)
76 PRK09240 thiH thiamine biosynt 87.9 2.5 6.4E-05 23.0 6.5 83 46-133 87-179 (371)
77 PRK08445 hypothetical protein; 86.3 3 7.5E-05 22.5 6.1 78 24-110 38-118 (348)
78 PRK05927 hypothetical protein; 85.2 3.4 8.7E-05 22.1 6.2 82 20-110 37-121 (350)
79 COG1533 SplB DNA repair photol 82.7 4.3 0.00011 21.4 6.7 81 30-122 37-127 (297)
80 PRK06267 hypothetical protein; 80.0 5.3 0.00014 20.8 6.6 71 46-121 42-117 (324)
81 PRK08444 hypothetical protein; 77.5 6.3 0.00016 20.3 6.7 92 20-120 41-135 (353)
82 TIGR01574 miaB-methiolase tRNA 74.5 5.8 0.00015 20.5 4.3 84 5-108 139-236 (456)
83 COG0320 LipA Lipoate synthase 74.3 6.1 0.00016 20.4 4.4 65 46-118 83-153 (306)
84 PRK05579 bifunctional phosphop 72.6 8.3 0.00021 19.5 8.3 72 60-131 161-247 (392)
85 TIGR01578 MiaB-like-B MiaB-lik 72.6 4.4 0.00011 21.4 3.3 81 30-127 152-245 (487)
86 pfam10276 zf-CHCC Zinc-finger 69.4 5.5 0.00014 20.7 3.2 33 14-55 8-40 (40)
87 PRK06136 uroporphyrin-III C-me 69.2 9.9 0.00025 19.0 6.4 51 63-116 62-113 (253)
88 PRK10474 putative fructose-lik 68.2 5.4 0.00014 20.7 3.0 24 102-125 5-28 (88)
89 cd01554 EPT-like Enol pyruvate 67.7 9.9 0.00025 19.0 4.2 38 86-123 98-136 (408)
90 PRK05576 cobalt-precorrin-2 C( 65.6 12 0.00029 18.5 5.2 48 66-116 75-123 (224)
91 PRK09234 fbiC FO synthase; Rev 65.0 11 0.00028 18.6 4.1 78 20-114 72-152 (846)
92 COG1032 Fe-S oxidoreductase [E 64.5 12 0.00031 18.3 5.4 35 29-78 205-239 (490)
93 PRK13188 bifunctional UDP-3-O- 63.9 12 0.00032 18.3 5.4 89 11-113 12-121 (465)
94 PRK05926 hypothetical protein; 62.8 13 0.00033 18.1 5.8 87 20-116 61-150 (371)
95 COG4391 Uncharacterized protei 61.8 6.8 0.00017 20.0 2.5 35 12-56 26-60 (62)
96 pfam04239 DUF421 Protein of un 61.6 11 0.00027 18.8 3.4 43 84-126 6-62 (98)
97 TIGR00708 cobA cob(I)alamin ad 60.3 9.7 0.00025 19.0 3.1 24 65-93 132-155 (191)
98 PRK10427 putative fructose-lik 60.1 12 0.00031 18.3 3.6 25 101-125 23-47 (114)
99 COG1445 FrwB Phosphotransferas 58.7 10 0.00026 18.9 2.9 24 101-124 22-45 (122)
100 cd01555 UdpNAET UDP-N-acetylgl 58.4 10 0.00026 18.9 2.9 37 86-123 98-135 (400)
101 PRK08173 DNA topoisomerase III 57.8 11 0.00029 18.5 3.1 42 32-76 627-670 (857)
102 pfam05706 CDKN3 Cyclin-depende 57.5 16 0.00041 17.5 3.8 47 66-116 59-105 (207)
103 pfam02379 consensus 57.5 14 0.00037 17.8 3.5 26 101-126 20-45 (103)
104 PRK09613 thiH thiamine biosynt 57.3 16 0.00041 17.5 5.9 65 24-100 83-148 (471)
105 PRK08508 biotin synthase; Prov 56.3 17 0.00043 17.4 6.8 71 27-110 12-87 (279)
106 PRK12928 lipoyl synthase; Prov 55.9 17 0.00043 17.4 5.4 81 15-118 53-143 (290)
107 PRK11404 putative PTS transpor 55.7 16 0.00042 17.5 3.6 23 101-123 24-46 (482)
108 PRK05481 lipoyl synthase; Prov 54.0 18 0.00046 17.2 5.3 65 46-118 65-135 (289)
109 cd01556 EPSP_synthase EPSP syn 53.9 18 0.00046 17.2 4.6 39 85-123 96-135 (409)
110 PRK02427 3-phosphoshikimate 1- 53.5 18 0.00047 17.1 4.2 37 85-121 109-146 (424)
111 PRK10712 fructose-specific PTS 52.8 14 0.00036 17.9 2.9 38 85-123 104-146 (563)
112 cd05569 PTS_IIB_fructose PTS_I 51.3 20 0.00051 16.9 3.5 24 102-125 20-43 (96)
113 TIGR00510 lipA lipoic acid syn 51.2 18 0.00045 17.3 3.1 89 15-121 62-156 (310)
114 TIGR01358 DAHP_synth_II 3-deox 50.9 20 0.00052 16.8 5.0 54 60-114 291-346 (450)
115 PRK05948 precorrin-2 methyltra 50.5 21 0.00052 16.8 4.9 35 84-118 92-127 (238)
116 PRK09765 2-O-a-mannosyl-D-glyc 49.1 17 0.00043 17.4 2.8 59 65-124 139-207 (638)
117 pfam00275 EPSP_synthase EPSP s 49.0 22 0.00055 16.6 3.9 35 86-120 107-142 (415)
118 TIGR00829 FRU PTS system, Fru 48.1 18 0.00045 17.3 2.8 22 102-123 19-40 (85)
119 PRK10329 glutaredoxin-like pro 48.0 8.7 0.00022 19.3 1.2 61 46-108 10-73 (81)
120 TIGR02475 CobW cobalamin biosy 47.4 16 0.0004 17.6 2.4 34 97-130 79-119 (349)
121 TIGR02351 thiH thiazole biosyn 46.8 23 0.00059 16.4 3.6 67 46-117 88-159 (378)
122 PRK11860 bifunctional 3-phosph 45.0 25 0.00063 16.2 3.8 39 86-124 111-151 (662)
123 TIGR02407 ectoine_ectB diamino 43.8 9.6 0.00024 19.0 0.9 15 20-34 15-29 (413)
124 COG5623 CLP1 Predicted GTPase 43.5 26 0.00066 16.1 4.9 103 6-121 30-138 (424)
125 TIGR01125 TIGR01125 MiaB-like 43.0 27 0.00068 16.0 5.7 81 22-116 163-261 (475)
126 COG4981 Enoyl reductase domain 42.4 27 0.00069 16.0 3.6 41 82-122 121-161 (717)
127 COG1105 FruK Fructose-1-phosph 41.6 28 0.00071 15.9 6.6 62 60-122 106-170 (310)
128 TIGR01777 yfcH conserved hypot 41.5 23 0.00059 16.4 2.5 41 25-77 70-111 (307)
129 TIGR01196 edd phosphogluconate 41.2 17 0.00044 17.3 1.8 57 91-150 489-553 (614)
130 pfam11051 Mannosyl_trans3 Mann 40.8 20 0.00052 16.8 2.2 35 86-120 2-38 (263)
131 TIGR01027 proB glutamate 5-kin 40.5 28 0.00072 15.9 2.8 36 88-123 10-52 (379)
132 PRK07168 bifunctional uroporph 40.3 29 0.00074 15.8 5.8 50 63-116 62-113 (474)
133 pfam00590 TP_methylase Tetrapy 39.8 30 0.00076 15.7 5.0 52 65-117 53-105 (200)
134 pfam01212 Beta_elim_lyase Beta 39.2 30 0.00077 15.7 5.5 77 61-137 105-199 (288)
135 PRK04160 diphthine synthase; P 37.7 32 0.00081 15.5 4.6 38 85-122 76-114 (259)
136 KOG2900 consensus 37.5 32 0.00082 15.5 3.5 43 25-79 87-131 (380)
137 KOG2492 consensus 37.4 21 0.00054 16.7 1.8 78 4-98 201-279 (552)
138 PRK13508 tagatose-6-phosphate 36.9 33 0.00084 15.4 6.6 61 61-122 104-167 (309)
139 pfam01474 DAHP_synth_2 Class-I 35.9 34 0.00087 15.3 4.7 54 60-114 286-341 (437)
140 COG1574 Predicted metal-depend 34.6 33 0.00085 15.4 2.4 32 91-122 312-345 (535)
141 pfam03331 LpxC UDP-3-O-acyl N- 34.5 36 0.00091 15.2 2.9 92 11-113 10-119 (276)
142 cd02518 GT2_SpsF SpsF is a gly 34.4 36 0.00091 15.2 4.0 62 69-132 74-139 (233)
143 TIGR02254 YjjG/YfnB HAD superf 34.3 32 0.00081 15.5 2.3 25 100-124 108-132 (233)
144 TIGR00423 TIGR00423 conserved 34.1 36 0.00092 15.1 4.1 67 46-117 18-96 (331)
145 PRK02122 glucosamine-6-phospha 33.6 35 0.0009 15.2 2.4 26 102-127 396-423 (660)
146 KOG3454 consensus 33.5 12 0.0003 18.5 -0.0 12 46-58 5-16 (165)
147 KOG2749 consensus 32.9 38 0.00096 15.0 3.9 97 7-114 31-134 (415)
148 PRK08035 type III secretion sy 32.9 38 0.00097 15.0 3.0 10 11-20 32-41 (326)
149 TIGR01460 HAD-SF-IIA HAD-super 32.5 38 0.00098 15.0 3.7 40 84-123 4-48 (304)
150 COG0007 CysG Uroporphyrinogen- 32.3 39 0.00099 14.9 5.8 51 63-116 63-114 (244)
151 TIGR01356 aroA 3-phosphoshikim 32.1 39 0.001 14.9 3.4 53 66-124 84-138 (444)
152 TIGR00700 GABAtrnsam 4-aminobu 31.8 21 0.00053 16.8 1.0 30 167-196 200-234 (427)
153 PRK09732 hypothetical protein; 31.4 31 0.0008 15.5 1.9 65 21-98 39-103 (134)
154 COG0128 AroA 5-enolpyruvylshik 30.8 41 0.001 14.8 4.2 38 86-123 110-148 (428)
155 cd01427 HAD_like Haloacid deha 30.7 41 0.001 14.8 3.2 21 101-121 30-50 (139)
156 TIGR01508 rib_reduct_arch diam 30.4 42 0.0011 14.7 3.1 37 100-136 138-181 (224)
157 cd01423 MGS_CPS_I_III Methylgl 30.0 42 0.0011 14.7 2.3 37 87-124 2-38 (116)
158 TIGR02247 HAD-1A3-hyp Epoxide 30.0 40 0.001 14.8 2.2 36 88-123 95-133 (228)
159 TIGR00389 glyS_dimeric glycyl- 30.0 38 0.00097 15.0 2.1 31 170-201 513-544 (606)
160 TIGR00630 uvra excinuclease AB 29.3 43 0.0011 14.6 4.0 56 46-116 117-177 (956)
161 PRK10637 cysG siroheme synthas 29.3 43 0.0011 14.6 6.3 51 63-116 275-326 (457)
162 TIGR00222 panB 3-methyl-2-oxob 28.8 44 0.0011 14.5 4.0 55 49-114 82-136 (267)
163 TIGR00709 dat 2,4-diaminobutyr 28.6 7.7 0.0002 19.7 -1.6 14 21-34 20-33 (445)
164 pfam09153 DUF1938 Domain of un 28.1 36 0.00092 15.1 1.7 32 89-120 30-61 (86)
165 cd03112 CobW_like The function 27.9 24 0.00062 16.3 0.8 40 88-127 61-103 (158)
166 TIGR01469 cobA_cysG_Cterm urop 27.4 47 0.0012 14.4 5.7 58 60-121 57-119 (242)
167 pfam05166 YcgL YcgL domain. Th 27.4 47 0.0012 14.4 2.4 30 87-116 41-71 (74)
168 PRK05580 primosome assembly pr 27.1 47 0.0012 14.4 6.9 80 42-129 429-518 (699)
169 pfam08150 FerB FerB (NUC096) d 26.8 41 0.001 14.8 1.8 27 5-31 25-55 (76)
170 pfam07991 IlvN Acetohydroxy ac 26.0 49 0.0013 14.2 2.2 30 109-141 94-123 (165)
171 COG1090 Predicted nucleoside-d 26.0 49 0.0013 14.2 3.0 10 25-34 59-68 (297)
172 TIGR00338 serB phosphoserine p 25.8 50 0.0013 14.2 2.7 22 101-122 92-113 (223)
173 TIGR02183 GRXA Glutaredoxin, G 25.8 25 0.00064 16.2 0.6 13 26-50 1-13 (86)
174 TIGR03351 PhnX-like phosphonat 25.7 50 0.0013 14.2 2.5 30 94-123 85-115 (220)
175 PRK13186 lpxC UDP-3-O-[3-hydro 25.6 50 0.0013 14.2 4.8 93 11-114 11-121 (299)
176 PRK09472 ftsA cell division pr 25.2 51 0.0013 14.1 4.5 13 64-76 103-115 (420)
177 TIGR03307 PhnP phosphonate met 25.1 23 0.00059 16.5 0.3 15 12-26 4-18 (249)
178 TIGR00097 HMP-P_kinase phospho 24.6 41 0.0011 14.7 1.5 43 63-109 74-123 (264)
179 cd06502 TA_like Low-specificit 24.4 53 0.0013 14.0 4.5 56 62-117 105-165 (338)
180 pfam05161 MOFRL MOFRL family. 23.9 40 0.001 14.9 1.3 12 87-98 2-13 (107)
181 PRK05632 phosphate acetyltrans 23.8 49 0.0013 14.2 1.8 40 83-122 286-325 (702)
182 COG1856 Uncharacterized homolo 23.7 54 0.0014 13.9 2.5 77 25-119 14-96 (275)
183 TIGR02855 spore_yabG sporulati 23.1 56 0.0014 13.9 2.7 23 3-34 16-38 (292)
184 COG1058 CinA Predicted nucleot 22.7 54 0.0014 14.0 1.8 25 66-94 46-70 (255)
185 PRK09518 bifunctional cytidyla 21.3 60 0.0015 13.6 1.8 99 18-117 288-393 (714)
186 PRK11244 phnP carbon-phosphoru 21.1 30 0.00077 15.7 0.2 15 12-26 4-18 (250)
187 cd02577 PSTD1 PSTD1: Pseudouri 21.1 61 0.0016 13.6 2.6 29 3-34 9-38 (319)
188 COG2875 CobM Precorrin-4 methy 21.1 61 0.0016 13.6 4.6 53 61-116 55-108 (254)
189 TIGR01369 CPSaseII_lrg carbamo 20.9 62 0.0016 13.6 2.1 49 62-120 632-681 (1089)
190 PRK13982 bifunctional SbtC-lik 20.8 62 0.0016 13.6 8.3 72 60-131 229-318 (476)
191 TIGR01465 cobM_cbiF precorrin- 20.6 62 0.0016 13.5 4.8 52 61-116 51-104 (252)
192 TIGR01036 pyrD_sub2 dihydrooro 20.5 42 0.0011 14.7 0.9 56 66-124 200-262 (370)
193 TIGR02764 spore_ybaN_pdaB poly 20.1 64 0.0016 13.5 3.4 103 65-201 78-192 (198)
No 1
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=100.00 E-value=0 Score=349.13 Aligned_cols=193 Identities=23% Similarity=0.277 Sum_probs=144.4
Q ss_pred CCCCEEEEE-ECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHH
Q ss_conf 630124477-5105584013731599976898887555333323688887757523258--8866078999999999875
Q gi|254780202|r 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQW 78 (211)
Q Consensus 2 ~~~~i~EiF-~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~--~~~~~~~~~~i~~~i~~~~ 78 (211)
..+||+||| +||||||.++|+|++||||+|||| ||.||||+|+|... .....++.+++++.+.++.
T Consensus 1 ~kl~v~EiF~~SiQGEG~~~G~p~vFvR~~GCnl-----------~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~~ 69 (238)
T TIGR03365 1 TKIPVLEIFGPTIQGEGMVIGQKTMFVRTGGCDY-----------RCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALG 69 (238)
T ss_pred CCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 9887787778955678813373189994089898-----------67658988761787887756378999999999834
Q ss_pred HCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCCC--CCCCEEEEECCCCCCCC---CC---------
Q ss_conf 216678738998077200003-5178999986898799972788866--78850798416777410---01---------
Q gi|254780202|r 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP--PQGIDWICVSPKAGCDL---KI--------- 143 (211)
Q Consensus 79 ~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~~--~~~~d~it~SPK~~~~~---~~--------- 143 (211)
.....+|+|||||||+|. +.+|++.|++.|++|+||||||+++ ...+|++++|||.+.+- ..
T Consensus 70 ---~~~~~~V~iTGGEPllq~~~~~L~~~l~~~g~~v~iETnGt~~~~~~~~~d~~~~d~K~psSg~~~~~~~~~~~l~~ 146 (238)
T TIGR03365 70 ---GGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFRDLDDLTLSPKPPSSGMETDWQALDDCIER 146 (238)
T ss_pred ---CCCCCEEEECCCCHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf ---89861899459983444189999999985798499978998760004557889996477999896346789999998
Q ss_pred ---CCHHHHHHHHHHCC---CCHHHHCCCCCCEEEECCCCCCCCHH--------H---HHHHHHHHHH-C--CCCEEEEE
Q ss_conf ---21235666530127---68578537785779982488424688--------8---9999999996-7--89779787
Q gi|254780202|r 144 ---KGGQELKLVFPQVN---VSPENYIGFDFERFSLQPMDGPFLEE--------N---TNLAISYCFQ-N--PKWRLSVQ 203 (211)
Q Consensus 144 ---~~~~ElK~V~~~~~---~~~~~~~~~~~~~~~LqP~~~~~~~~--------~---~~~~i~~~~~-~--~~~Rls~Q 203 (211)
...+++|||+.+.+ .+.+....+...+++|||.+....+. . .+.+++.+++ + .++|++||
T Consensus 147 ~~~~~~~~~KFVI~~~~D~~~a~ei~~~~~~~pv~l~p~~~~~~~~~~~~~~~~~~~~~~~L~e~~~~~~~~~~vR~~~Q 226 (238)
T TIGR03365 147 LDDGPQTSLKVVVFDDADYAYAKEVHARYPDLPFYLQPGNHTPPPSDDDDLIDGLLDRYEWLVEKVAADREWFDVRVLPQ 226 (238)
T ss_pred HCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 44489706999976789999999999974799789656888568520124578899999999999997475478478820
Q ss_pred EHHHC
Q ss_conf 34402
Q gi|254780202|r 204 THKFI 208 (211)
Q Consensus 204 ~HK~l 208 (211)
+||+|
T Consensus 227 LHk~I 231 (238)
T TIGR03365 227 LHVLL 231 (238)
T ss_pred EEHHE
T ss_conf 22510
No 2
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-44 Score=319.57 Aligned_cols=193 Identities=38% Similarity=0.545 Sum_probs=145.5
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHH
Q ss_conf 9630124477510558401373159997689888755533332368888775752325--88866078999999999875
Q gi|254780202|r 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQW 78 (211)
Q Consensus 1 M~~~~i~EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~--~~~~~~~~~~~i~~~i~~~~ 78 (211)
|..|+|+|||.||||||.++|+|++||||+|||| ||+||||+++|.. ...+..++.++|++.+.++.
T Consensus 1 ~~~~~i~EiF~siQGEG~~~Gr~~vFVR~~GC~l-----------~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~ 69 (212)
T COG0602 1 QMKYRIVEIFDSIQGEGKNIGRPSVFVRFAGCNL-----------RCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG 69 (212)
T ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCC-----------CCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 9824789888888168663671489997689788-----------78998987660633368988258999999998508
Q ss_pred HCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCCCCC-C-CEEEEECCCCCCCC------CCCCHHHH
Q ss_conf 216678738998077200003-517899998689879997278886678-8-50798416777410------01212356
Q gi|254780202|r 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQ-G-IDWICVSPKAGCDL------KIKGGQEL 149 (211)
Q Consensus 79 ~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~~~~-~-~d~it~SPK~~~~~------~~~~~~El 149 (211)
+..++|+||||||++|+ +.+|++.|+++||++++|||||++... . +||++.|||..... ++..++++
T Consensus 70 ----~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~~~~~~~~d~l~~~~~~~~~~~~~~~~~l~~~~~~ 145 (212)
T COG0602 70 ----YKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIPVWTGYTIDELTVSPKSDKSLLSAIDEVLVDGDFI 145 (212)
T ss_pred ----CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCHHH
T ss_conf ----8876699818864662239999999985884099837997155343204778626643323102333442141556
Q ss_pred HHHHHHCC----CCHHHHC--CCC-C-CEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCC
Q ss_conf 66530127----6857853--778-5-7799824884246888999999999678977978734402859
Q gi|254780202|r 150 KLVFPQVN----VSPENYI--GFD-F-ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 (211)
Q Consensus 150 K~V~~~~~----~~~~~~~--~~~-~-~~~~LqP~~~~~~~~~~~~~i~~~~~~~~~Rls~Q~HK~lgi~ 211 (211)
|++++... ...+... ... . ..++.||.+. .+.+..++...+. +.+||||+|+|||||++
T Consensus 146 ~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~rl~~Q~Hk~l~~~ 212 (212)
T COG0602 146 KFVYAKVLADRGSANQRVLRLAESLKPVVLVPQPISR--LDKLVKLCARLAI-RLNVRLSPQTHKLLGIN 212 (212)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCH--HHHHHHHHHHHHC-CCCEEEEEEEEHHHCCC
T ss_conf 5443220001231248999876503552010378776--8999999998621-66749976635032779
No 3
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=99.82 E-value=2e-19 Score=152.63 Aligned_cols=171 Identities=24% Similarity=0.277 Sum_probs=126.9
Q ss_pred EEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 44775105584013731599976898887555333323688887757523258886607899999999987521667873
Q gi|254780202|r 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 (211)
Q Consensus 7 ~EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 86 (211)
.|++-|+.|.|.+- .|| ++||+| ||.||.-+=||.....+..+|++++++.|.++...-..++.
T Consensus 5 ~Es~G~vDGPG~RF---vvF--mqGC~l-----------RC~YChNPDTW~~~~~G~~~t~~el~~e~~~yk~f~~~sGG 68 (243)
T TIGR02493 5 VESMGTVDGPGIRF---VVF--MQGCPL-----------RCQYCHNPDTWDLKKGGTEVTVEELIKEVKSYKDFFKASGG 68 (243)
T ss_pred EEECCCCCCCCCEE---EEE--ECCHHH-----------HHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCC
T ss_conf 35345223885068---775--435367-----------75305898743358878120789999999989988720799
Q ss_pred EEEEECCCCCCCC--CCHHHHHHHH-CCCEEEEECCC---C-C--------CCCCCCEEEEECCCCCCCCCCCCHH---H
Q ss_conf 8998077200003--5178999986-89879997278---8-8--------6678850798416777410012123---5
Q gi|254780202|r 87 YCVLTGGEPLLQV--DVPLIQALNK-RGFEIAVETNG---T-I--------EPPQGIDWICVSPKAGCDLKIKGGQ---E 148 (211)
Q Consensus 87 ~VviTGGEPllq~--l~~L~~~l~~-~g~~v~IETnG---t-~--------~~~~~~d~it~SPK~~~~~~~~~~~---E 148 (211)
-|++||||||+|+ +.++..+.|+ .|++++|+||| | + .+.+..|.+-++-|...+.+++..- +
T Consensus 69 GvT~SGGEPllQ~~F~~~~f~~cK~~~GiHTclDT~GGCftf~~~~~~~~~~lLe~TDLvLLDiK~~~~~~y~~LTg~~~ 148 (243)
T TIGR02493 69 GVTVSGGEPLLQPEFVLELFKACKKELGIHTCLDTSGGCFTFLGGFTEAADELLEVTDLVLLDIKHIDPEKYKKLTGVKS 148 (243)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCC
T ss_conf 58986895020169999999999985698388744883433412124899975100587886234368124000145677
Q ss_pred HHHHHHHCCCCHHH-HCCCCC-CEEEECCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 66653012768578-537785-77998248842468889999999996789
Q gi|254780202|r 149 LKLVFPQVNVSPEN-YIGFDF-ERFSLQPMDGPFLEENTNLAISYCFQNPK 197 (211)
Q Consensus 149 lK~V~~~~~~~~~~-~~~~~~-~~~~LqP~~~~~~~~~~~~~i~~~~~~~~ 197 (211)
++-.+ +.+... ..+.+. .+++|-| ....+++++..+.+++..-++
T Consensus 149 ~~ptl---~Fa~~L~~~~kP~WiRYVlVP-GyTD~~eDi~~l~~fv~~~~~ 195 (243)
T TIGR02493 149 LEPTL---EFAKYLAKRNKPIWIRYVLVP-GYTDSEEDIEALAEFVKTLPN 195 (243)
T ss_pred CHHHH---HHHHHHHHCCCCEEEEEEECC-CCCCCHHHHHHHHHHHHHCCC
T ss_conf 52458---999999965898899998658-877998999999999974699
No 4
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.79 E-value=1.2e-18 Score=147.38 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=115.0
Q ss_pred CEE--EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 124--477510558401373159997689888755533332368888775752325888660789999999998752166
Q gi|254780202|r 5 SIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 (211)
Q Consensus 5 ~i~--EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 82 (211)
.|. |-|.+..|.|.++ .|| |+|||| ||.||-.+.+| +...+..++++++++.+.+......
T Consensus 6 ~v~~i~~~s~~DGPGiRt---~vF--l~GC~l-----------rC~~ChNpet~-~~~~g~~~t~~el~~~i~~~~~f~~ 68 (246)
T PRK11145 6 RIHSFESCGTVDGPGIRF---ITF--MQGCLM-----------RCLYCHNRDTW-DTHGGKEVTVEELMKEVVTYRHFMN 68 (246)
T ss_pred EEEEEEEECCCCCCCEEE---EEE--ECCCCC-----------CCCCCCCHHHH-CCCCCEECCHHHHHHHHHHHHHHHH
T ss_conf 998767857375898389---998--068778-----------89989796784-8679987559999999998799986
Q ss_pred CCCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCC--------CCCCCEEEEECCCCCCCCCCCCH--HHHH
Q ss_conf 78738998077200003--517899998689879997278886--------67885079841677741001212--3566
Q gi|254780202|r 83 KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE--------PPQGIDWICVSPKAGCDLKIKGG--QELK 150 (211)
Q Consensus 83 ~~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~--------~~~~~d~it~SPK~~~~~~~~~~--~ElK 150 (211)
.+...|++|||||++|. +..|.+.+++.|+++.+||||..+ +.+.+|.+.++-|...+...+.. -..+
T Consensus 69 ~sgGGVT~SGGEPllq~ef~~~l~~~~k~~gi~taidTnG~~~~~~~~~~~ll~~~D~vl~DiK~~d~~~h~~~tG~~n~ 148 (246)
T PRK11145 69 ASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVSNH 148 (246)
T ss_pred HCCCEEEEECCCEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHCCCCH
T ss_conf 05963898699512689999999999988799899989999875579999988632345764666898999999888918
Q ss_pred HHHHHCCCCHHHHCCCCC-CEEEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 653012768578537785-7799824884246888999999999678
Q gi|254780202|r 151 LVFPQVNVSPENYIGFDF-ERFSLQPMDGPFLEENTNLAISYCFQNP 196 (211)
Q Consensus 151 ~V~~~~~~~~~~~~~~~~-~~~~LqP~~~~~~~~~~~~~i~~~~~~~ 196 (211)
.|+....... ..+... -++.+-|- -...++++..+.+++.+..
T Consensus 149 ~iL~nl~~l~--~~~~~~~iR~pvIPg-~nD~~e~i~~~a~fl~~l~ 192 (246)
T PRK11145 149 RTLEFARYLA--KRNQKTWIRYVVVPG-WTDDDDSAHRLGEFIKDMG 192 (246)
T ss_pred HHHHHHHHHH--HCCCCEEEEEEEECC-CCCCHHHHHHHHHHHHHCC
T ss_conf 9999999999--789978998867799-8899999999999999769
No 5
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=99.71 E-value=3.6e-17 Score=137.29 Aligned_cols=172 Identities=21% Similarity=0.300 Sum_probs=109.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 13731599976898887555333323688887757523258886607899999999987521667873899807720000
Q gi|254780202|r 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 (211)
Q Consensus 19 ~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq 98 (211)
|-|++|.=|=++|||| +|+||--.+....-...++.+.+++.+.+.+-... -..|||||||||||
T Consensus 13 ~PG~~a~~iF~~GCn~-----------~CpyCHN~~~~~~~~~~~~~~~e~~~~~L~~R~~l----l~gVVitGGEptlQ 77 (220)
T TIGR02495 13 YPGKLAFTIFFQGCNL-----------KCPYCHNSELLIPRKGSGEIELEELLEFLRRRQGL----LDGVVITGGEPTLQ 77 (220)
T ss_pred ECCCEEEEEEECCCCC-----------CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCC----EEEEEEECCCHHHH
T ss_conf 1885368887027889-----------98788887640020057610277799998731342----10578728753236
Q ss_pred CC-C-HHHHHHHH-CCCEEEEECCCCCCC-------CCCCEEEEECCCCCCCC---------CCCC-------HHHHHHH
Q ss_conf 35-1-78999986-898799972788866-------78850798416777410---------0121-------2356665
Q gi|254780202|r 99 VD-V-PLIQALNK-RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDL---------KIKG-------GQELKLV 152 (211)
Q Consensus 99 ~l-~-~L~~~l~~-~g~~v~IETnGt~~~-------~~~~d~it~SPK~~~~~---------~~~~-------~~ElK~V 152 (211)
.. + .++..+++ .||+|.|.|||++|- ..-+|||.++-|++.+- +..+ ..--..+
T Consensus 78 ~~eL~d~~~~v~~nlGf~vkLdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~~~tnisPsrtPe~l 157 (220)
T TIGR02495 78 AGELGDFLREVRENLGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAKKETNISPSRTPEKL 157 (220)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf 77789999999986592785606788678999998604875787501478656740006332100353246877565899
Q ss_pred HHHCCCCHHHHCCCC----CCEEEECCCCC-CCC-HHHHHHHHHHHHHCC---CCEEEEEEH
Q ss_conf 301276857853778----57799824884-246-888999999999678---977978734
Q gi|254780202|r 153 FPQVNVSPENYIGFD----FERFSLQPMDG-PFL-EENTNLAISYCFQNP---KWRLSVQTH 205 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~----~~~~~LqP~~~-~~~-~~~~~~~i~~~~~~~---~~Rls~Q~H 205 (211)
+.....+.+...... .+.-+-=++.+ -.. ++.+..+..++.++. +.++-||--
T Consensus 158 ~~~~~~SlEil~~s~GCGGi~fE~RTTV~~~~~~Geed~~ei~~~i~~~~~~~D~~yvLQ~~ 219 (220)
T TIGR02495 158 LKNILKSLEILLESGGCGGIEFELRTTVVRGLLDGEEDLAEIATRIKENGVKKDETYVLQQF 219 (220)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 99987556755424786886532445655254165278999997632244046436873167
No 6
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=99.66 E-value=3.9e-16 Score=130.22 Aligned_cols=134 Identities=23% Similarity=0.210 Sum_probs=82.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCC------CCCCCEEE
Q ss_conf 8866078999999999875216678738998077200003--517899998689879997278886------67885079
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE------PPQGIDWI 131 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~------~~~~~d~i 131 (211)
.-|+.+|++||+++|++-......+...|+|+|||||+|+ ...|+++.|++|.+++|||+|.-+ +.+.+|.+
T Consensus 105 ~~G~~~tV~ev~~~~~~D~~fY~~SGGGvTlSGGEPl~Q~eF~~~LL~~c~~~gihTAvET~gft~~~~~~~~~~~~DLf 184 (305)
T TIGR02494 105 IVGKEMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLKACRERGIHTAVETSGFTPWETIEKVLPYVDLF 184 (305)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 02451488999999986556665139906734871140158999999999758994676055688889999888877699
Q ss_pred EECCCCCCCCCCCCH--HHHHHHHHHCCCCHHHHCCC-C-CCEEEECCCCC--CCCHHHHHHHHHHHHHC
Q ss_conf 841677741001212--35666530127685785377-8-57799824884--24688899999999967
Q gi|254780202|r 132 CVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGF-D-FERFSLQPMDG--PFLEENTNLAISYCFQN 195 (211)
Q Consensus 132 t~SPK~~~~~~~~~~--~ElK~V~~~~~~~~~~~~~~-~-~~~~~LqP~~~--~~~~~~~~~~i~~~~~~ 195 (211)
-++-|.-.+.+.++. -.-..|+.+. ..-..... . ..-+.-+|+=. ..++++...+++++...
T Consensus 185 L~DiK~~D~~~H~~~tG~~N~~IL~NL--~~L~~~~~~GG~~v~iR~PvIpG~Nds~~~i~a~~~f~~~~ 252 (305)
T TIGR02494 185 LYDIKHLDDERHKEVTGVDNELILENL--EALLAAGKDGGKNVVIRIPVIPGFNDSEENIEAIAEFLRKL 252 (305)
T ss_pred HHHHHHCCCHHHHHHCCCCHHHHHHHH--HHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 872641180120553389837899999--99997178899558998720489898989999999999985
No 7
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-13 Score=113.39 Aligned_cols=115 Identities=30% Similarity=0.512 Sum_probs=79.6
Q ss_pred EEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 4477510558401373159997689888755533332368888775752325--88866078999999999875216678
Q gi|254780202|r 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQWITGEKE 84 (211)
Q Consensus 7 ~EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~--~~~~~~~~~~~i~~~i~~~~~~~~~~ 84 (211)
.|.|++..|.| .=+-+|| ++|||| ||.||-..-+|.. ....+..+.+++.+.. .....
T Consensus 24 ie~~~~~d~~g--~~~~~vf--~~GCnl-----------rC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~-----~~~~~ 83 (260)
T COG1180 24 IEKKPLVDGPG--SIRLSVF--LQGCNL-----------RCPYCQNPEISQRGREVSGEEVSPEVLVDKA-----FYSES 83 (260)
T ss_pred CEEECCCCCCC--CEEEEEE--ECCCCC-----------CCCCCCCHHHHHCCCCCCHHHCCHHHHHHHH-----HHCCC
T ss_conf 50647746798--4499998--789899-----------8998979467606565656457898999987-----43169
Q ss_pred CCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCCCC------CCCEEEEECCCCCCCC
Q ss_conf 738998077200003--51789999868987999727888667------8850798416777410
Q gi|254780202|r 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP------QGIDWICVSPKAGCDL 141 (211)
Q Consensus 85 ~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~~~------~~~d~it~SPK~~~~~ 141 (211)
...|++|||||++|. +.++.+..++.|+++.++|||..+.. +..|++.++-|...+.
T Consensus 84 ~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~ 148 (260)
T COG1180 84 GGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDE 148 (260)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 98899989604443999999999999879908997689988268999997423148840668878
No 8
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.25 E-value=1.5e-10 Score=92.29 Aligned_cols=90 Identities=23% Similarity=0.356 Sum_probs=68.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHH
Q ss_conf 689888755533332368888775752325-88866078999999999875216678738998077200003-5178999
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQA 106 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~ 106 (211)
+..||| +|.+| |+... .....+++.+|+...|+++... +...|+|||||||+.+ +.++++.
T Consensus 24 T~~CNL-----------~C~hC---y~~~~~~~~~~ELs~~e~~~~id~l~~~---Gv~~v~~tGGEPllr~D~~ei~~~ 86 (375)
T PRK05301 24 TYRCPL-----------QCPYC---SNPLDLARHGAELSTAEWIRVLREARAL---GVLQLHFSGGEPLLRKDLEELVAH 86 (375)
T ss_pred HCHHCC-----------CCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 140078-----------78466---9850048765789999999999999986---998899618652456689999999
Q ss_pred HHHCCCEEEEECCCCCCC--------CCCCEEEEECC
Q ss_conf 986898799972788866--------78850798416
Q gi|254780202|r 107 LNKRGFEIAVETNGTIEP--------PQGIDWICVSP 135 (211)
Q Consensus 107 l~~~g~~v~IETnGt~~~--------~~~~d~it~SP 135 (211)
.++.|+.+.|-||||.-- ...++.|.+|-
T Consensus 87 a~~~G~~~~l~TNG~lit~~~a~~L~~~gl~~v~vSl 123 (375)
T PRK05301 87 ARRLGLYTNLITSGVGLTEARLAALKAAGLDHIQLSF 123 (375)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 9976975899606745579999999850998899956
No 9
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.22 E-value=7.1e-11 Score=94.56 Aligned_cols=133 Identities=22% Similarity=0.212 Sum_probs=84.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCC------CCCCCEEE
Q ss_conf 8866078999999999875216678738998077200003--517899998689879997278886------67885079
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE------PPQGIDWI 131 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~------~~~~~d~i 131 (211)
.-+..++++++++.|.+.......+...|++||||||+|+ +.+|++.+++.|++++|||||..+ +.+.+|.+
T Consensus 14 ~~G~~~tveel~~~i~kd~~fy~~SgGGVT~SGGEpl~Q~~F~~ellk~~k~~gihtaieTsG~~~~~~~~~~~~~~Dl~ 93 (213)
T PRK10076 14 RIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEV 93 (213)
T ss_pred HHCEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCEE
T ss_conf 52668109999999997199982479807860752635999999999999866998899768888899999999845989
Q ss_pred EECCCCCCCCCCCCH--HHHHHHHHHCCCCHHHHCCCCC-CEEEECCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 841677741001212--3566653012768578537785-779982488424688899999999967
Q gi|254780202|r 132 CVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDF-ERFSLQPMDGPFLEENTNLAISYCFQN 195 (211)
Q Consensus 132 t~SPK~~~~~~~~~~--~ElK~V~~~~~~~~~~~~~~~~-~~~~LqP~~~~~~~~~~~~~i~~~~~~ 195 (211)
-++-|...+.+.+.. -....++.+.... ...+... -++-+-| .-...+++...+.+++...
T Consensus 94 L~DiK~~d~~~h~~~TG~~n~~il~Nl~~l--~~~~~~v~iR~pvIP-g~nd~~e~i~~~~~f~~~l 157 (213)
T PRK10076 94 LFDLKIMDATQARDVVKMNLPRVLENLRLL--VSEGVNVIPRLPLIP-GFTLSRENMQQALDVLIPL 157 (213)
T ss_pred EEEECCCCHHHHHHHHCCCHHHHHHHHHHH--HHCCCCEEEEEEEEC-CCCCCHHHHHHHHHHHHHC
T ss_conf 986177984899999799939999999999--967996899886779-9789999999999999986
No 10
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.18 E-value=6.1e-11 Score=95.02 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHH
Q ss_conf 68988875553333236888877575232588866078999999999875216678738998077200003-51789999
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQAL 107 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l 107 (211)
+.-||| +|.+|+. ....+.....++++++.++.+++. +++.|+||||||||++ +.++++.+
T Consensus 35 t~rCNL-----------~C~~C~~-i~~~~~~l~~~Ls~ee~~~~~~e~------Gap~V~itGGEPLLr~dl~eIv~~a 96 (318)
T TIGR03470 35 LFRCNL-----------ACAGCGK-IQYPAEILKQRLSVEECLRAVDEC------GAPVVSIPGGEPLLHPEIDEIVRGL 96 (318)
T ss_pred CCCCCC-----------CCCCCCC-CCCCCHHHHCCCCHHHHHHHHHHC------CCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 132267-----------7889974-136764654438999999999984------9978995188745564799999999
Q ss_pred HHCCCEEEEECCCCCC
Q ss_conf 8689879997278886
Q gi|254780202|r 108 NKRGFEIAVETNGTIE 123 (211)
Q Consensus 108 ~~~g~~v~IETnGt~~ 123 (211)
+++|+.|.|=|||++-
T Consensus 97 ~~~g~~v~l~TNG~Ll 112 (318)
T TIGR03470 97 VARKKFVYLCTNALLL 112 (318)
T ss_pred HHCCCEEEEECCHHHH
T ss_conf 9759979997755200
No 11
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=99.14 E-value=6.9e-10 Score=87.84 Aligned_cols=161 Identities=26% Similarity=0.370 Sum_probs=99.3
Q ss_pred CCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCC---C---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 731599976---8988875553333236888877---5---752325888660789999999998752166787389980
Q gi|254780202|r 21 GRVAVFCRF---SGCNLWSGREQDRLSAQCRFCD---T---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 (211)
Q Consensus 21 G~p~vFiRl---~GCnL~c~~~~~~~~~~C~~CD---T---~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT 91 (211)
||+.--+|+ --||| ||.||= . .+.|. .....++.+|+...+..+... +.+-|=||
T Consensus 6 GR~~~YLRiSvTDRCNl-----------RC~YCMP~~~FG~~~~f~--~~~~~Lt~eEi~rl~~~~v~~---Gv~KvRlT 69 (346)
T TIGR02666 6 GRRIDYLRISVTDRCNL-----------RCVYCMPEEGFGEGLDFL--PKEELLTFEEIERLVRAFVGL---GVRKVRLT 69 (346)
T ss_pred CCEEEEEEEEECCCCCC-----------CCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHC---CCEEEEEE
T ss_conf 77323577876164787-----------246668865678876678--755668989999999999974---97168752
Q ss_pred CCCCCCCC-CCHHHHHHHH-CCC---EEEEECCCCCC-------CCCCCEEEEECCCCCCCC---CCC-CHHHHHHHHHH
Q ss_conf 77200003-5178999986-898---79997278886-------678850798416777410---012-12356665301
Q gi|254780202|r 92 GGEPLLQV-DVPLIQALNK-RGF---EIAVETNGTIE-------PPQGIDWICVSPKAGCDL---KIK-GGQELKLVFPQ 155 (211)
Q Consensus 92 GGEPllq~-l~~L~~~l~~-~g~---~v~IETnGt~~-------~~~~~d~it~SPK~~~~~---~~~-~~~ElK~V~~~ 155 (211)
|||||+-+ +..|+..+.+ .|. .|+|=|||++- -.+.++=|.+|--+-.+. ++. +.+.+.-|++.
T Consensus 70 GGEPLlR~~l~~lv~~~~~~~g~~~~di~lTTNG~~L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~G 149 (346)
T TIGR02666 70 GGEPLLRKDLVELVARLAALPGIEIEDIALTTNGLLLERHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAG 149 (346)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 77744136758999999842785433554100522358899999971888036540148889999985789988899999
Q ss_pred CCCCHHHHCC-CCCCEEEECCCCCCCCHHHHHHHHHHHHHCC-CCEEE
Q ss_conf 2768578537-7857799824884246888999999999678-97797
Q gi|254780202|r 156 VNVSPENYIG-FDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLS 201 (211)
Q Consensus 156 ~~~~~~~~~~-~~~~~~~LqP~~~~~~~~~~~~~i~~~~~~~-~~Rls 201 (211)
.+.+.+.-.. ++.+.|.+ -|...++..++ ++|+++++ ..||.
T Consensus 150 i~aA~~~Gl~~vKlN~V~~---~G~Nd~Ei~~l-~~~~~~~~~~lRFI 193 (346)
T TIGR02666 150 IDAALEAGLKPVKLNTVVL---RGVNDDEIVDL-AEFAKERGVTLRFI 193 (346)
T ss_pred HHHHHHCCCCCEEEEEEEC---CCCCHHHHHHH-HHHHHHCCCEEEEE
T ss_conf 9999965998314766762---78897789999-99997579607887
No 12
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=99.08 E-value=4.9e-10 Score=88.86 Aligned_cols=163 Identities=22% Similarity=0.348 Sum_probs=102.2
Q ss_pred CCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 731599976---89888755533332368888775752325----88866078999999999875216678738998077
Q gi|254780202|r 21 GRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 (211)
Q Consensus 21 G~p~vFiRl---~GCnL~c~~~~~~~~~~C~~CDT~y~~~~----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG 93 (211)
|||--=+|. .-||| .|-||.-+=+... +..+..+|++++..++.... .++.+-|-||||
T Consensus 6 GR~v~~LRis~T~~CN~-----------~CfyCH~EG~~~~~~r~gp~~~~Ls~eei~~~~~~a~---~fGV~kvKlTGG 71 (324)
T TIGR02668 6 GRPVTSLRISVTDECNL-----------SCFYCHREGEDESRGRQGPGGNELSPEEIERIVRVAS---EFGVRKVKLTGG 71 (324)
T ss_pred CCEECCCEEEECCCCCC-----------CCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCCEEEECCC
T ss_conf 87204631577342386-----------4221036788888888888644558999999999998---708832775178
Q ss_pred CCCCC-CCCHHHHHHHHCCC-EEEEECCCCCCC-------CCCCEEEEECCCCCCCCC---CC--CHHHHHHHHHHCCCC
Q ss_conf 20000-35178999986898-799972788866-------788507984167774100---12--123566653012768
Q gi|254780202|r 94 EPLLQ-VDVPLIQALNKRGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK---IK--GGQELKLVFPQVNVS 159 (211)
Q Consensus 94 EPllq-~l~~L~~~l~~~g~-~v~IETnGt~~~-------~~~~d~it~SPK~~~~~~---~~--~~~ElK~V~~~~~~~ 159 (211)
||||- ++.+.+..+++.++ .|.+=|||++-. .+.+|=|-+|--+-.+.+ +. ..+.++-|+.....|
T Consensus 72 EPlLR~D~~~Ii~~~~~~~~~~vSmTTNG~LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A 151 (324)
T TIGR02668 72 EPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESA 151 (324)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 74345669999986146750344203031448989999998285613120267886788864489986078999999999
Q ss_pred HHHHCCCCCCEEEECCC--CCCCCHHH-HHHHHHHHHH-CCCCEEEE
Q ss_conf 57853778577998248--84246888-9999999996-78977978
Q gi|254780202|r 160 PENYIGFDFERFSLQPM--DGPFLEEN-TNLAISYCFQ-NPKWRLSV 202 (211)
Q Consensus 160 ~~~~~~~~~~~~~LqP~--~~~~~~~~-~~~~i~~~~~-~~~~Rls~ 202 (211)
. +....++.|-=+ .|.. ... ...+++++.+ ..+..||+
T Consensus 152 ~----~~GL~PVKlN~Vvl~G~N-~~~~~~~m~~f~~~~~~g~~LQl 193 (324)
T TIGR02668 152 V----DAGLTPVKLNMVVLKGIN-DNEEIPDMVEFAADYEGGAILQL 193 (324)
T ss_pred H----HCCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9----728981378888754778-85007999999987515936898
No 13
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.05 E-value=2.9e-09 Score=83.59 Aligned_cols=102 Identities=26% Similarity=0.419 Sum_probs=72.0
Q ss_pred CCCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 3731599976---8988875553333236888877575232588866078999999999875216678738998077200
Q gi|254780202|r 20 AGRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 (211)
Q Consensus 20 ~G~p~vFiRl---~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPl 96 (211)
-|++--.+|+ --||| +|.||-.+-.. .......++.+|+...+..+.. .+.+.|=|||||||
T Consensus 9 ~gR~i~yLRiSvTdrCN~-----------rC~YCmpeg~~-~~~~~~~Ls~eEi~~l~~~~~~---~Gi~kvRlTGGEPL 73 (329)
T PRK13361 9 FGRTVTYLRLSVTDRCDF-----------RCVYCMSEDPC-FLPRDQVLTLEELAWLAQAFTE---LGVRKIRLTGGEPL 73 (329)
T ss_pred CCCCCCCEEEEEECCCCC-----------CCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCCCC
T ss_conf 899048667885244058-----------38787998998-7870246899999999999997---29528996278822
Q ss_pred CCC-CCHHHHHHHHC-CC-EEEEECCCCCC-------CCCCCEEEEECCC
Q ss_conf 003-51789999868-98-79997278886-------6788507984167
Q gi|254780202|r 97 LQV-DVPLIQALNKR-GF-EIAVETNGTIE-------PPQGIDWICVSPK 136 (211)
Q Consensus 97 lq~-l~~L~~~l~~~-g~-~v~IETnGt~~-------~~~~~d~it~SPK 136 (211)
+.+ +.+|+..+++. |+ .|.+=|||++- -...+|-|.+|--
T Consensus 74 lR~dl~~li~~l~~~~gi~~islTTNG~lL~~~a~~Lk~aGL~rvNISLD 123 (329)
T PRK13361 74 VRTGCDQLVARLGKLPGLEELSMTTNGSRLARFAAELADAGLKRLNISLD 123 (329)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 35688999999861799771899664776899999999779986997357
No 14
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.05 E-value=2e-09 Score=84.76 Aligned_cols=100 Identities=28% Similarity=0.483 Sum_probs=71.1
Q ss_pred CCCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 3731599976---898887555333323688887757----523258886607899999999987521667873899807
Q gi|254780202|r 20 AGRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 (211)
Q Consensus 20 ~G~p~vFiRl---~GCnL~c~~~~~~~~~~C~~CDT~----y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTG 92 (211)
-||+--.+|+ --||| +|.||=-+ +.+. .....++.+|+..++..+.. .+.+.|-|||
T Consensus 12 fGR~i~yLRiSvTdrCN~-----------rC~YCmpe~~~~~~~~--~~~~~Ls~eEi~~i~~~~~~---lGi~kiRlTG 75 (334)
T PRK00164 12 FGRKVTYLRLSVTDRCNF-----------RCTYCMPEGYFGLTFL--PKEELLSLEEIERLVRAFAA---LGVRKIRLTG 75 (334)
T ss_pred CCCCCCCEEEEEECCCCC-----------CCCCCCCCCCCCCCCC--CHHHCCCHHHHHHHHHHHHH---CCCCEEEECC
T ss_conf 899348667885044047-----------3877899777787888--73422999999999999997---0962798607
Q ss_pred CCCCCCC-CCHHHHHHHHC-CC-EEEEECCCCCC-------CCCCCEEEEECC
Q ss_conf 7200003-51789999868-98-79997278886-------678850798416
Q gi|254780202|r 93 GEPLLQV-DVPLIQALNKR-GF-EIAVETNGTIE-------PPQGIDWICVSP 135 (211)
Q Consensus 93 GEPllq~-l~~L~~~l~~~-g~-~v~IETnGt~~-------~~~~~d~it~SP 135 (211)
||||+.+ +..|++.+++. |+ .|.+-|||++- -...+|-|.+|-
T Consensus 76 GEPLlR~di~~li~~l~~~~gi~~v~lTTNG~lL~~~a~~Lk~aGL~riNISL 128 (334)
T PRK00164 76 GEPLLRKDLEDIIARLAALPGIRDLALTTNGYLLARRAAALKDAGLTRVNVSL 128 (334)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 88432357899999986327975178844488999999999985998699711
No 15
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.97 E-value=1.2e-08 Score=79.36 Aligned_cols=124 Identities=26% Similarity=0.436 Sum_probs=82.0
Q ss_pred CCCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 3731599976---898887555333323688887757--52325888660789999999998752166787389980772
Q gi|254780202|r 20 AGRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTD--FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 (211)
Q Consensus 20 ~G~p~vFiRl---~GCnL~c~~~~~~~~~~C~~CDT~--y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGE 94 (211)
.|++.--+|. -.||+ ||.||--+ +++. .....++++++...+..... .+.+-|-|||||
T Consensus 6 ~gR~~~~LRiSvTdrCNf-----------rC~YCm~eg~~~~~--~~~~~Ls~eei~~~~~~~~~---~Gv~kvRlTGGE 69 (322)
T COG2896 6 FGRPVRYLRISVTDRCNF-----------RCTYCMPEGPLAFL--PKEELLSLEEIRRLVRAFAE---LGVEKVRLTGGE 69 (322)
T ss_pred CCCEECEEEEEEECCCCC-----------CCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCC
T ss_conf 588702079998267377-----------46446888865667--65454899999999999997---396458971898
Q ss_pred CCCCC-CCHHHHHHHHCCC-EEEEECCCCCCC-------CCCCEEEEECCCCCCCCC---CCCHHHHHHHHHHCCCC
Q ss_conf 00003-5178999986898-799972788866-------788507984167774100---12123566653012768
Q gi|254780202|r 95 PLLQV-DVPLIQALNKRGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVS 159 (211)
Q Consensus 95 Pllq~-l~~L~~~l~~~g~-~v~IETnGt~~~-------~~~~d~it~SPK~~~~~~---~~~~~ElK~V~~~~~~~ 159 (211)
||+.. +.+++..+.+.++ .+.+=|||+.-. ...++=|.+|-.+-.+.+ +...+.++-|+...+.+
T Consensus 70 PllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A 146 (322)
T COG2896 70 PLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAA 146 (322)
T ss_pred CHHHCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 31332799999987434644288744567679999999975986899503449989999886789299999999999
No 16
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.86 E-value=9.8e-09 Score=80.04 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=65.2
Q ss_pred EECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 75105584013731599976898887555333323688887757523258886607899999999987521667873899
Q gi|254780202|r 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 (211)
Q Consensus 10 F~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~Vv 89 (211)
+..+.|+|.++ ++| ++||+. +|+.|-.+-+| +...+..++.+.+.+++.++..... ....|+
T Consensus 9 ~~~vnGPG~R~---~iw--~qGC~~-----------~C~GC~Np~tw-~~~~G~~~~~~~~~~ii~~l~~~~~-~~~GvT 70 (154)
T PRK11121 9 VDVVNGPGTRC---TLF--VSGCVH-----------QCPGCYNKSTW-RLNSGHPFTKAMEDQIIADLNDTRI-KRQGLS 70 (154)
T ss_pred CCEECCCCEEE---EEE--ECCCCC-----------CCCCCCCHHHC-CCCCCEECHHHHHHHHHHHHHHCCC-CCCCEE
T ss_conf 54434897799---999--568877-----------79799997785-8758977619999999998764235-547538
Q ss_pred EECCCCCCCC----CCHHHHHHHHC--CCEEEEECCCCCC
Q ss_conf 8077200003----51789999868--9879997278886
Q gi|254780202|r 90 LTGGEPLLQV----DVPLIQALNKR--GFEIAVETNGTIE 123 (211)
Q Consensus 90 iTGGEPllq~----l~~L~~~l~~~--g~~v~IETnGt~~ 123 (211)
|+||||+.|. +.+|++.+++. |..|-+=|.=|++
T Consensus 71 isGGEP~~q~~~~~l~~l~~~~k~~~~~~~I~~yTGyt~e 110 (154)
T PRK11121 71 LSGGDPLHPQNVPAILKLVKRVKAECPGKDIWLWTGYKLD 110 (154)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 8688826514799999999999975899849998186389
No 17
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012837 This enzyme is a member of the radical-SAM protein and utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centred radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO). The two components form an alpha-2/beta-2 heterodimer.; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity, 0051539 4 iron 4 sulfur cluster binding, 0005737 cytoplasm.
Probab=98.74 E-value=2.5e-08 Score=77.32 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=60.6
Q ss_pred EECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 75105584013731599976898887555333323688887757523258886607899999999987521667873899
Q gi|254780202|r 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 (211)
Q Consensus 10 F~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~Vv 89 (211)
|--|.|||.++ ++| +|||. +.|..|=.+-|| ....|.++|.....+++.++..... ...-|+
T Consensus 8 ~d~vNG~G~R~---slf--vaGC~-----------H~C~GC~N~~TW-~~~~G~~~t~~~~~~i~~~l~~~~~-~~~G~t 69 (158)
T TIGR02491 8 EDIVNGEGIRV---SLF--VAGCK-----------HHCEGCFNKETW-NFNGGEEFTEELEKEIIRDLNDNPI-LIDGLT 69 (158)
T ss_pred CEEECCCCEEE---EEE--ECCCC-----------CCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEE
T ss_conf 20354880489---986--04760-----------388888783555-7678942036889999998512881-663014
Q ss_pred EECCCCCCCC-C---CHHHHHHHHC
Q ss_conf 8077200003-5---1789999868
Q gi|254780202|r 90 LTGGEPLLQV-D---VPLIQALNKR 110 (211)
Q Consensus 90 iTGGEPllq~-l---~~L~~~l~~~ 110 (211)
++|||||.++ . .+|++.++++
T Consensus 70 lsGGDPL~~~N~~~~~~l~k~~k~~ 94 (158)
T TIGR02491 70 LSGGDPLYPANVEELIELVKKIKAE 94 (158)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 3188888724436899999999985
No 18
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.56 E-value=2.3e-07 Score=70.69 Aligned_cols=80 Identities=28% Similarity=0.471 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--C-
Q ss_conf 6898887555333323688887757523258-----8866078999999999875216678738998077200003--5-
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D- 100 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~-----~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~--l- 100 (211)
..+||| +|.|| |..... .....++.+.+...++.+.... ...-.|++.||||||.. .
T Consensus 12 T~~CNL-----------~C~YC---y~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~-~~~~~i~f~GGEPLL~~~~~~ 76 (370)
T PRK13758 12 SSGCNL-----------KCTYC---FYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEA-EGHCSFAFQGGEPTLAGLEFF 76 (370)
T ss_pred CCCCCC-----------CCCCC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCHHH
T ss_conf 788488-----------99766---883768866666645482999999999998636-895389997722206983699
Q ss_pred CHHHHHH---HHCCCEE--EEECCCCCC
Q ss_conf 1789999---8689879--997278886
Q gi|254780202|r 101 VPLIQAL---NKRGFEI--AVETNGTIE 123 (211)
Q Consensus 101 ~~L~~~l---~~~g~~v--~IETnGt~~ 123 (211)
..++... ..++.++ .|-||||+-
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~i~TNGtLL 104 (370)
T PRK13758 77 EELMELQRKHNYKNLKIYNSLQTNGTLI 104 (370)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCEEC
T ss_conf 9999999985568976999985188766
No 19
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.48 E-value=1.6e-06 Score=65.05 Aligned_cols=98 Identities=28% Similarity=0.484 Sum_probs=64.6
Q ss_pred CCEEEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-
Q ss_conf 315999-768988875553333236888877575232588866078999999999875216678738998077200003-
Q gi|254780202|r 22 RVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 (211)
Q Consensus 22 ~p~vFi-Rl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~- 99 (211)
...+++ =..-||| +|.+|...+. .......+.++....+.++...+. ...|++||||||+.+
T Consensus 18 p~~~~~~~t~~Cnl-----------~C~~C~~~~~---~~~~~el~~~~~~~~~~~~~~~g~--~~~v~~~gGEPll~~~ 81 (347)
T COG0535 18 PLVVGIELTNRCNL-----------ACKHCYAEAG---KKLPGELSTEEDLRVIDELAELGE--IPVVIFTGGEPLLRPD 81 (347)
T ss_pred CCEEEEECCCCCCC-----------CCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCCCCEECCC
T ss_conf 73799855887687-----------4998772426---776773568787899999987188--4499807987333457
Q ss_pred CCHHHHHHHHC-CCEEEEECCCCCC--------CCCCCEEEEECC
Q ss_conf 51789999868-9879997278886--------678850798416
Q gi|254780202|r 100 DVPLIQALNKR-GFEIAVETNGTIE--------PPQGIDWICVSP 135 (211)
Q Consensus 100 l~~L~~~l~~~-g~~v~IETnGt~~--------~~~~~d~it~SP 135 (211)
+.++++..++. ++.+.+-|||+.. -...++.+.+|-
T Consensus 82 ~~ei~~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSl 126 (347)
T COG0535 82 LLEIVEYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISL 126 (347)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 999999985138728988268754538899988766887699997
No 20
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=65.85 Aligned_cols=84 Identities=27% Similarity=0.468 Sum_probs=53.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-
Q ss_conf 7315999768988875553333236888877575232588866078999999999875216678738998077200003-
Q gi|254780202|r 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 (211)
Q Consensus 21 G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~- 99 (211)
..|+-|+ ||| +|.|| |..........|+.+.+...|+.+........=.|++-||||||..
T Consensus 11 ~kpt~~~----CNL-----------~C~YC---~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~ 72 (378)
T COG0641 11 AKPTGFE----CNL-----------DCKYC---FYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGL 72 (378)
T ss_pred ECCCCCC----CCC-----------CCCEE---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHH
T ss_conf 4666676----699-----------88850---76177777787899999999999996089874799997886403408
Q ss_pred -----CCHHHHHHHHCCCEEE--EECCCCCC
Q ss_conf -----5178999986898799--97278886
Q gi|254780202|r 100 -----DVPLIQALNKRGFEIA--VETNGTIE 123 (211)
Q Consensus 100 -----l~~L~~~l~~~g~~v~--IETnGt~~ 123 (211)
...|.+.... |.+++ |-|||++-
T Consensus 73 ~f~~~~~~l~~k~~~-~~~i~~siqTNg~LL 102 (378)
T COG0641 73 DFYRKAVALQQKYAN-GKTISNALQTNGTLL 102 (378)
T ss_pred HHHHHHHHHHHHHCC-CCCEEEEEEECCCCC
T ss_conf 799999999998605-882578998760325
No 21
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=98.37 E-value=3.1e-06 Score=63.05 Aligned_cols=98 Identities=34% Similarity=0.540 Sum_probs=66.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHH
Q ss_conf 768988875553333236888877575232588866078999999999875216678738998077200003-5178999
Q gi|254780202|r 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQA 106 (211)
Q Consensus 28 Rl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~ 106 (211)
...|||+ +|.||..... .........+.+++.+.++.... ...+.+.++||||+++. ....+..
T Consensus 3 ~~~gC~~-----------~C~fC~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~~~~~i~~~gg~p~~~~~~~~~~~~ 67 (165)
T pfam04055 3 ITPGCNL-----------RCTYCAFPSI-RARGKGRELSPEEILEEAKELAR---LGVEVVILTGGEPLLLPDLVELLER 67 (165)
T ss_pred ECCCCCC-----------CCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 8937487-----------7968999785-78886522699999999988874---5985999931676665277777888
Q ss_pred HHH----CCCEEEEECCCCCCCC--------CCCEEEEECCCCCCC
Q ss_conf 986----8987999727888667--------885079841677741
Q gi|254780202|r 107 LNK----RGFEIAVETNGTIEPP--------QGIDWICVSPKAGCD 140 (211)
Q Consensus 107 l~~----~g~~v~IETnGt~~~~--------~~~d~it~SPK~~~~ 140 (211)
+.. .++.+.++|||+..-. ...+++.+|+....+
T Consensus 68 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~ 113 (165)
T pfam04055 68 LLKLEELEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDD 113 (165)
T ss_pred HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 7653146764899998514331045689997198522246355999
No 22
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=98.36 E-value=3.5e-07 Score=69.54 Aligned_cols=90 Identities=22% Similarity=0.367 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-CCCCHHHHHHH
Q ss_conf 89888755533332368888775752325888660789999999998752166787389980772000-03517899998
Q gi|254780202|r 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALN 108 (211)
Q Consensus 30 ~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll-q~l~~L~~~l~ 108 (211)
.-||| +|+||.-+=... -.+.++|.++-.++..++...+.- +|=|+||||+. ++|.+|++.-+
T Consensus 15 hRCPL-----------~CPYCSNPLel~--R~~~EL~T~~W~~Vl~qAa~lGvl---qlHfSGGEP~aR~DL~eLv~~A~ 78 (363)
T TIGR02109 15 HRCPL-----------QCPYCSNPLELA--RRKAELTTEEWTDVLTQAAELGVL---QLHFSGGEPLARPDLVELVAHAR 78 (363)
T ss_pred HCCCC-----------CCCCCCCCHHHH--HHHCCCCHHHHHHHHHHHHHCCCE---EEECCCCCCCCCCCHHHHHHHHH
T ss_conf 25888-----------777989706888--511468888999999999853906---75130776663357799999997
Q ss_pred HCCCEEEEECCCCCC--------CCCCCEEEEECC
Q ss_conf 689879997278886--------678850798416
Q gi|254780202|r 109 KRGFEIAVETNGTIE--------PPQGIDWICVSP 135 (211)
Q Consensus 109 ~~g~~v~IETnGt~~--------~~~~~d~it~SP 135 (211)
+.|+.+.|=|||-.- -...+|-|=+|.
T Consensus 79 ~LGlYtNLITSGvGLt~~rl~~L~~aGLDHvQlSf 113 (363)
T TIGR02109 79 RLGLYTNLITSGVGLTEARLDALADAGLDHVQLSF 113 (363)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 75870146776345679999999757985788764
No 23
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.33 E-value=3.4e-06 Score=62.84 Aligned_cols=169 Identities=24% Similarity=0.277 Sum_probs=85.7
Q ss_pred EECCCCCCCCCCCC----------EEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 75105584013731----------59997-6898887555333323688887757523258--88660789999999998
Q gi|254780202|r 10 FLTLQGEGGHAGRV----------AVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEE 76 (211)
Q Consensus 10 F~SiQGEG~~~G~p----------~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~--~~~~~~~~~~i~~~i~~ 76 (211)
.|-+.|+=+.+|.- .+=+| .+|||| .|.+|..+---.+- ...-....+.+++..+.
T Consensus 84 iYi~eg~iPliG~~AFGlIdRGtNviqVRp~tgCnl-----------nCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~k 152 (414)
T COG2100 84 IYIIEGMIPLIGHTAFGLIDRGTNVIQVRPSTGCNL-----------NCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEK 152 (414)
T ss_pred EEECCCCCCEECCEEEEEEECCCEEEEECCCCCCCC-----------EEEEEECCCCCCCCEECCCEEECHHHHHHHHHH
T ss_conf 998168664002104457716851799647766432-----------058985257864330025617568999999999
Q ss_pred HHHCCCCCCCEEEEE-CCCCCCCC-CCHHHHHHHHC-CC-EEEEECCCCCC--------CCCCCEEEEEC-----CCCCC
Q ss_conf 752166787389980-77200003-51789999868-98-79997278886--------67885079841-----67774
Q gi|254780202|r 77 QWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKR-GF-EIAVETNGTIE--------PPQGIDWICVS-----PKAGC 139 (211)
Q Consensus 77 ~~~~~~~~~~~VviT-GGEPllq~-l~~L~~~l~~~-g~-~v~IETnGt~~--------~~~~~d~it~S-----PK~~~ 139 (211)
.....+..-. .-|- -|||++|+ +..|+++|++. |. -|+++|||+.- ..+.+|=|.+| ||.+.
T Consensus 153 Va~~KgkglE-aHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak 231 (414)
T COG2100 153 VARFKGKGLE-AHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAK 231 (414)
T ss_pred HHHHHCCCEE-EEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCCCHHHHH
T ss_conf 9964078727-875378887545339999999743898428998507644459999999970875588620237988987
Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHHCCCCCCEEEECCCCC-CCCHHHHHHHHHHHHHC
Q ss_conf 100121235666530127685785377857799824884-24688899999999967
Q gi|254780202|r 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG-PFLEENTNLAISYCFQN 195 (211)
Q Consensus 140 ~~~~~~~~ElK~V~~~~~~~~~~~~~~~~~~~~LqP~~~-~~~~~~~~~~i~~~~~~ 195 (211)
.+.=.....+|-|..-+.... . .-..+.+.|++- ..+++..+.+++|..+.
T Consensus 232 ~L~G~~dYdv~kvle~aE~i~----~-a~idvlIaPv~lPG~ND~E~~~iIe~A~~i 283 (414)
T COG2100 232 MLAGRKDYDVKKVLEVAEYIA----N-AGIDVLIAPVWLPGVNDDEMPKIIEWAREI 283 (414)
T ss_pred HHCCCCCCCHHHHHHHHHHHH----H-CCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 742840117899999999998----6-798889831442786817789999999984
No 24
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.23 E-value=5.4e-06 Score=61.45 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCC---CCCCEEEEEC-CCCCCCC-CCHHHHHHHHCC-CEEEEEC
Q ss_conf 88887757523258-88660789999999998752166---7873899807-7200003-517899998689-8799972
Q gi|254780202|r 46 QCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGE---KEGRYCVLTG-GEPLLQV-DVPLIQALNKRG-FEIAVET 118 (211)
Q Consensus 46 ~C~~CDT~y~~~~~-~~~~~~~~~~i~~~i~~~~~~~~---~~~~~VviTG-GEPllq~-l~~L~~~l~~~g-~~v~IET 118 (211)
+|-||=-..+.... ...+.+..++|.+.+..+....+ ....+|+|+| |||+|++ +.+|++.+|+.| +.+.+=|
T Consensus 37 ~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvT 116 (296)
T COG0731 37 NCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVT 116 (296)
T ss_pred CCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 77589666777777778724158999999999842256656788779993798833464889999999860795089993
Q ss_pred CCCCC-CC---CCCEEEEECC
Q ss_conf 78886-67---8850798416
Q gi|254780202|r 119 NGTIE-PP---QGIDWICVSP 135 (211)
Q Consensus 119 nGt~~-~~---~~~d~it~SP 135 (211)
|||+| +. ...|++.+|-
T Consensus 117 Ngslpdv~~~L~~~dql~~sL 137 (296)
T COG0731 117 NGSLPDVLEELKLPDQLYVSL 137 (296)
T ss_pred CCCHHHHHHHHCCCCEEEEEE
T ss_conf 897699998740588799981
No 25
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.22 E-value=7e-06 Score=60.68 Aligned_cols=87 Identities=24% Similarity=0.344 Sum_probs=48.8
Q ss_pred EEEEE--CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 59997--6898887555333323688887---757523258886607899999999987521667873899807720000
Q gi|254780202|r 24 AVFCR--FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 (211)
Q Consensus 24 ~vFiR--l~GCnL~c~~~~~~~~~~C~~C---DT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq 98 (211)
.+.+- -+.||| +|.|| |-...+ .......|+.+.+...|..+......+.-.+++-||||||-
T Consensus 14 hvm~KP~s~~CNL-----------~C~YCyy~~~~~~~-~~~~~~~Ms~e~l~~~I~~~~~~~~~~~v~f~~~GGEPlL~ 81 (412)
T PRK13745 14 YVMLKPVGAVCNL-----------ACDYCYYLEKSKLY-QENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMR 81 (412)
T ss_pred EEEECCCCCCCCC-----------CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 7982135587588-----------99867881614356-56775789899999999999964899858999868544565
Q ss_pred CC------CHHHHHHHHCCCE--EEEECCCCCC
Q ss_conf 35------1789999868987--9997278886
Q gi|254780202|r 99 VD------VPLIQALNKRGFE--IAVETNGTIE 123 (211)
Q Consensus 99 ~l------~~L~~~l~~~g~~--v~IETnGt~~ 123 (211)
.+ .+|.+.. ..|.+ ..|.||||+-
T Consensus 82 gl~f~~~~v~l~~~~-~~g~~i~~siQTNGtLL 113 (412)
T PRK13745 82 PLSFYKKAMELQKKY-ARGRTIDNCIQTNGTLL 113 (412)
T ss_pred CHHHHHHHHHHHHHH-CCCCEEEEEEEECCEEC
T ss_conf 478999999999985-38984689998778754
No 26
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR014191 Members of this entry represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR, see IPR012837 from INTERPRO). Members of this entry are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of these proteins as RNR activating proteins is partly from pairing with the candidate RNR and further supported by the finding that upstream of these operons are examples of a conserved regulatory element that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes ..
Probab=98.17 E-value=6e-06 Score=61.11 Aligned_cols=84 Identities=21% Similarity=0.375 Sum_probs=66.5
Q ss_pred EECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEEEECCCCCC-C---
Q ss_conf 97689888755533332368--888775752325888660789999999998752166--787389980772000-0---
Q gi|254780202|r 27 CRFSGCNLWSGREQDRLSAQ--CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE--KEGRYCVLTGGEPLL-Q--- 98 (211)
Q Consensus 27 iRl~GCnL~c~~~~~~~~~~--C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~VviTGGEPll-q--- 98 (211)
+-++||++ + |+.|.|.|+| ....|...|.+.+.+.++++...-. ++.-=|++=|||||. +
T Consensus 20 ~~~~GCp~-----------~PKC~GCHS~~lW-~~d~G~~Lt~e~~~~~l~~y~~~I~RYFPK~Cv~FlGGEPLAPw~~~ 87 (165)
T TIGR02826 20 FNISGCPL-----------GPKCKGCHSPELW-HEDEGTPLTEEALAQLLDKYRSLITRYFPKVCVLFLGGEPLAPWEPE 87 (165)
T ss_pred EEEECCCC-----------CCCCCCCCCHHHC-CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHEEEECCCCCCCCCCHH
T ss_conf 77546787-----------7959888873111-35679888989999999874000101210020200478988733768
Q ss_pred CCCHHHHHHHHC--CCEEEEECCCCC
Q ss_conf 351789999868--987999727888
Q gi|254780202|r 99 VDVPLIQALNKR--GFEIAVETNGTI 122 (211)
Q Consensus 99 ~l~~L~~~l~~~--g~~v~IETnGt~ 122 (211)
.+..|...+|.. +++|.+=|.=+.
T Consensus 88 ~l~~Ll~~~k~~~~~L~v~LYTG~~~ 113 (165)
T TIGR02826 88 ALLSLLKLVKEEHAGLKVCLYTGREH 113 (165)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999999997538866888508854
No 27
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.12 E-value=3.3e-06 Score=62.88 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--CCHHH
Q ss_conf 689888755533332368888775752--32588866078999999999875216678738998077200003--51789
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLI 104 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~--~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~--l~~L~ 104 (211)
.-|||| .|.||=. |- +.....+.-+++.++++.+.+... ...+..|-|+||||++-+ +.+++
T Consensus 48 ~VGCnl-----------~CayCw~-y~r~~~~~rag~f~~P~eVaeRL~ei~K--~~g~d~vRiSG~EP~l~~EHvlevI 113 (228)
T COG5014 48 TVGCNL-----------LCAYCWN-YFRNLRPKRAGDFLSPEEVAERLLEISK--KRGCDLVRISGAEPILGREHVLEVI 113 (228)
T ss_pred CCCCCE-----------EEHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 135331-----------2387666-6603872213021597999999999988--5588689962898644689999999
Q ss_pred HHHHHCCCEEEEECCCCCC
Q ss_conf 9998689879997278886
Q gi|254780202|r 105 QALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 105 ~~l~~~g~~v~IETnGt~~ 123 (211)
+.+- .++--+||||++-
T Consensus 114 eLl~--~~tFvlETNG~~~ 130 (228)
T COG5014 114 ELLV--NNTFVLETNGLMF 130 (228)
T ss_pred HHCC--CCEEEEEECCEEE
T ss_conf 8634--7649997577688
No 28
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=97.98 E-value=1.3e-05 Score=58.95 Aligned_cols=99 Identities=29% Similarity=0.527 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 731599976898887555333323688887757523258---88660789999999998752166787389980772000
Q gi|254780202|r 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG---TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 (211)
Q Consensus 21 G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~---~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll 97 (211)
|...+|| .+=||+ .|.||-.. .+..+ .-..+..+...-++++++...+ +..+.|||||||+
T Consensus 28 ~KlVlFv-TG~C~~-----------~CfYCPvs-~~r~gkdviyaNErpV~~~eDii~ea~~~~---a~GasiTGGdPl~ 91 (353)
T COG2108 28 GKLVLFV-TGLCNR-----------SCFYCPVS-DERKGKDVIYANERPVKSVEDIIEEAKLMD---ALGASITGGDPLL 91 (353)
T ss_pred CCEEEEE-ECCCCC-----------CCCCCCCC-HHHCCCCCEEECCCCCCCHHHHHHHHHHHC---CCCCCCCCCCHHH
T ss_conf 7169999-556689-----------85257687-776488633115631475788999999724---6665332787489
Q ss_pred C--CCCHHHHHHHH---CCCEEEEECCCCCCC--------CCCCEEEEECC
Q ss_conf 0--35178999986---898799972788866--------78850798416
Q gi|254780202|r 98 Q--VDVPLIQALNK---RGFEIAVETNGTIEP--------PQGIDWICVSP 135 (211)
Q Consensus 98 q--~l~~L~~~l~~---~g~~v~IETnGt~~~--------~~~~d~it~SP 135 (211)
- .-...++.|++ .+|++|+=|+|+..- .+.+|=|-+-|
T Consensus 92 ~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp 142 (353)
T COG2108 92 EIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHP 142 (353)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 999999999999876353205998406656888999999867987599468
No 29
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=97.93 E-value=3.4e-05 Score=56.02 Aligned_cols=80 Identities=38% Similarity=0.645 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHH
Q ss_conf 68988875553333236888877575232588866078999999999875216678738998077200003-51789999
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQAL 107 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l 107 (211)
..|||. +|.||...... ..........+++.+.+.... ....+.+.++||||+++. ..+++..+
T Consensus 4 srGC~~-----------~C~fC~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~l~~~ 68 (204)
T cd01335 4 TRGCNL-----------NCGFCSNPASK-GRGPESPPEIEEILDIVLEAK---ERGVEVVILTGGEPLLYPELAELLRRL 68 (204)
T ss_pred CCCCCC-----------CCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH---HCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 637385-----------69879987547-987566788999999999998---759869997246766665321013545
Q ss_pred HHC--CCEEEEECCCCCC
Q ss_conf 868--9879997278886
Q gi|254780202|r 108 NKR--GFEIAVETNGTIE 123 (211)
Q Consensus 108 ~~~--g~~v~IETnGt~~ 123 (211)
.+. ++++.++||+...
T Consensus 69 ~~~~~~~~i~~~t~~~~~ 86 (204)
T cd01335 69 KKELPGFEISIETNGTLL 86 (204)
T ss_pred HHCCCCCEEEEEECCCCC
T ss_conf 530687179998336547
No 30
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.73 E-value=0.00038 Score=48.91 Aligned_cols=117 Identities=24% Similarity=0.358 Sum_probs=75.2
Q ss_pred EEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 24477510558401373159997689888755533332368888775752325888660789999999998752166787
Q gi|254780202|r 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 (211)
Q Consensus 6 i~EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 85 (211)
|..-|.-.--|-..+|.-+|| |+|||+ +|-||-..-.+.. ..+..++++++++++.++.. .++
T Consensus 104 vas~flH~GEE~~LvpSgTVF--FsgCnf-----------rCVfCQNwdISq~-~~g~~v~~e~La~i~~~~~~---~Ga 166 (335)
T COG1313 104 VASEFLHFGEEPPLVPSGTVF--FSGCNF-----------RCVFCQNWDISQF-GIGKEVTPEDLAEIILELRR---HGA 166 (335)
T ss_pred EECCCCCCCCCCCCCCCCEEE--ECCCCE-----------EEEEECCCCCCCC-CCCEEECHHHHHHHHHHHHH---HCC
T ss_conf 310222257677656874079--647605-----------8997557652336-78807569999999999998---257
Q ss_pred CEEEEECCCCCCCCCCHHHHHHH--HCCCEEEEECCCCCC------CCCCCEEEEECCCCCCC
Q ss_conf 38998077200003517899998--689879997278886------67885079841677741
Q gi|254780202|r 86 RYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVETNGTIE------PPQGIDWICVSPKAGCD 140 (211)
Q Consensus 86 ~~VviTGGEPllq~l~~L~~~l~--~~g~~v~IETnGt~~------~~~~~d~it~SPK~~~~ 140 (211)
++|-+-||+|+-+.- -.++.|+ +....|---|||-.. +..-+|.---+.|-+++
T Consensus 167 kNvN~Vgg~Ptp~lp-~Ile~l~~~~~~iPvvwNSnmY~s~E~l~lL~gvVDiyL~DfKYgNd 228 (335)
T COG1313 167 KNVNFVGGDPTPHLP-FILEALRYASENIPVVWNSNMYMSEETLKLLDGVVDIYLPDFKYGND 228 (335)
T ss_pred CCEEECCCCCCCCHH-HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCEEEECCCCCCCH
T ss_conf 621005899987538-99999999742798797068744899999862602043043246888
No 31
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=97.70 E-value=5.6e-05 Score=54.57 Aligned_cols=38 Identities=37% Similarity=0.525 Sum_probs=32.2
Q ss_pred CEEEEE-CCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 389980-77200003-517899998689879997278886
Q gi|254780202|r 86 RYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 86 ~~VviT-GGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
+|+-|+ -|||++|+ +.+|++.||++|+.+.+=|||+.|
T Consensus 130 ~H~AiSL~GEPtlYP~l~eLi~~~h~r~~stFLVTNg~~P 169 (321)
T PRK13762 130 KHVAISLSGEPTLYPRLPELIEEFHKRGFTTFLVTNGTRP 169 (321)
T ss_pred HHEEHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 0010220488632021899999998579837998289898
No 32
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=97.61 E-value=0.00017 Score=51.27 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCC-EEEEECCCCCC
Q ss_conf 078999999999875216678738998077200003-5178999986898-79997278886
Q gi|254780202|r 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGF-EIAVETNGTIE 123 (211)
Q Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~-~v~IETnGt~~ 123 (211)
+.+++++-.++..+.....-++..|-+|||||++.+ +.+++...++.|+ +|+|-|||-..
T Consensus 90 Ept~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirl 151 (475)
T COG1964 90 EPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRL 151 (475)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEE
T ss_conf 77799999999999853899983267228986643558999997765686189982575020
No 33
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.13 E-value=0.0012 Score=45.42 Aligned_cols=80 Identities=29% Similarity=0.535 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-C---CCCCCEEEEEC-CCCCCC-C-CC
Q ss_conf 6898887555333323688887757523258886607899999999987521-6---67873899807-720000-3-51
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT-G---EKEGRYCVLTG-GEPLLQ-V-DV 101 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~-~---~~~~~~VviTG-GEPllq-~-l~ 101 (211)
..||++ +|.+|+|. .+...+..+..||++=+...... + .....+||+-| ||||+- + ..
T Consensus 108 QvGC~~-----------~C~FCaTg----~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~ 172 (349)
T COG0820 108 QVGCPV-----------GCTFCATG----QGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVV 172 (349)
T ss_pred CCCCCC-----------CCCEECCC----CCCCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 778678-----------88726456----666011217999999999999861766564364699964786066699999
Q ss_pred HHHHHHH-HCCC-----EEEEECCCCCC
Q ss_conf 7899998-6898-----79997278886
Q gi|254780202|r 102 PLIQALN-KRGF-----EIAVETNGTIE 123 (211)
Q Consensus 102 ~L~~~l~-~~g~-----~v~IETnGt~~ 123 (211)
+.++.+. +.|+ ++++-|+|-.+
T Consensus 173 ~a~~i~~~~~G~~ls~R~iTvSTsGi~~ 200 (349)
T COG0820 173 KALEIINDDEGLGLSKRRITVSTSGIVP 200 (349)
T ss_pred HHHHHHCCCCCCCCCCCEEEEECCCCCH
T ss_conf 9998626766666465179996588757
No 34
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.002 Score=43.96 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=52.3
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-
Q ss_conf 31599976898887555333323688887757523258886-6078999999999875216678738998077200003-
Q gi|254780202|r 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 (211)
Q Consensus 22 ~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~- 99 (211)
-+++|+=..+|.. -|+||=-.........+ .+-..+..++.|.+ ....+.|.+|||.||+-.
T Consensus 111 drvLll~t~~C~v-----------yCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~-----hPeI~eVllSGGDPL~ls~ 174 (369)
T COG1509 111 DRVLLLVTGVCAV-----------YCRYCFRRRFVGQDNQGFNKEEWDKALDYIAA-----HPEIREVLLSGGDPLSLSD 174 (369)
T ss_pred CEEEEEECCCCCC-----------EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC-----CCHHHEEEECCCCCCCCCH
T ss_conf 8489996486645-----------21000134555666566788999999999973-----9516517740787563688
Q ss_pred --CCHHHHHHHHCCC--EEEEECCC
Q ss_conf --5178999986898--79997278
Q gi|254780202|r 100 --DVPLIQALNKRGF--EIAVETNG 120 (211)
Q Consensus 100 --l~~L~~~l~~~g~--~v~IETnG 120 (211)
+..|+++|.+..+ .+-|-|-.
T Consensus 175 ~~L~~ll~~L~~IpHv~iiRi~TR~ 199 (369)
T COG1509 175 KKLEWLLKRLRAIPHVKIIRIGTRL 199 (369)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 9999999987548964699862467
No 35
>PRK11194 hypothetical protein; Provisional
Probab=96.76 E-value=0.0048 Score=41.41 Aligned_cols=87 Identities=28% Similarity=0.504 Sum_probs=56.6
Q ss_pred CCEEEEEC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------CCCC
Q ss_conf 31599976-----------89888755533332368888775752325888660789999999998752-------1667
Q gi|254780202|r 22 RVAVFCRF-----------SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI-------TGEK 83 (211)
Q Consensus 22 ~p~vFiRl-----------~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~-------~~~~ 83 (211)
.=+|+|+- .||++ +|.+|-|... ...+.++..||++-+..... .+..
T Consensus 92 IEtVlip~~~r~T~CvSSQVGC~m-----------~C~FCaTG~~----Gl~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~ 156 (372)
T PRK11194 92 VETVYIPEDDRATLCVSSQVGCAL-----------ECKFCSTAQQ----GFNRNLRVSEIIGQVWRAAKIIGAAKVTGQR 156 (372)
T ss_pred EEEEEEECCCCEEEEEEECCCCCC-----------CCCCCCCCCC----HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 789998749976899864376368-----------9984458864----4304878899999999999985320123666
Q ss_pred CCCEEEEEC-CCCCCC-C-CCHHHHHHHH-CCC-----EEEEECCCCCC
Q ss_conf 873899807-720000-3-5178999986-898-----79997278886
Q gi|254780202|r 84 EGRYCVLTG-GEPLLQ-V-DVPLIQALNK-RGF-----EIAVETNGTIE 123 (211)
Q Consensus 84 ~~~~VviTG-GEPllq-~-l~~L~~~l~~-~g~-----~v~IETnGt~~ 123 (211)
+..+||+-| ||||+- + ...-++.|.+ .|+ +|+|-|+|-.|
T Consensus 157 ~i~NiVfMGMGEPL~NydnV~~ai~il~~~~g~~~s~R~ITvST~Givp 205 (372)
T PRK11194 157 PITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVP 205 (372)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCH
T ss_conf 5321678437842553999999999864854667777858997778726
No 36
>KOG2876 consensus
Probab=96.67 E-value=0.00099 Score=46.08 Aligned_cols=79 Identities=32% Similarity=0.532 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-CCCCHHHHH
Q ss_conf 689888755533332368888775752325-888660789999999998752166787389980772000-035178999
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQA 106 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll-q~l~~L~~~ 106 (211)
+.-||| ||.||=-+ +... ....+-.+..+++.+...... .....+-+|||||++ |+..+....
T Consensus 18 te~cnl-----------rc~ycMps-eg~~l~pk~~~lav~eilrl~~lF~~---qgv~knrLtggeptIr~d~~~i~~g 82 (323)
T KOG2876 18 TEKCNL-----------RCQYCMPS-EGVPLKPKRKLLAVSEILRLAGLFAP---QGVDKNRLTGGEPLIRQDIVPIVAG 82 (323)
T ss_pred HHCCCC-----------CCCCCCHH-CCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 520073-----------12120120-07757641000002446776435667---5501554057887410464310144
Q ss_pred HHH-CCCE-EEEECCCCC
Q ss_conf 986-8987-999727888
Q gi|254780202|r 107 LNK-RGFE-IAVETNGTI 122 (211)
Q Consensus 107 l~~-~g~~-v~IETnGt~ 122 (211)
+.+ .|.+ +.|+|||..
T Consensus 83 ~~~l~gLks~~ITtng~v 100 (323)
T KOG2876 83 LSSLPGLKSIGITTNGLV 100 (323)
T ss_pred HHCCCHHHHHCEECCCHH
T ss_conf 412300144150126226
No 37
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=96.57 E-value=0.0065 Score=40.55 Aligned_cols=79 Identities=32% Similarity=0.574 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----HHH---HHCCCCCCCEEEEEC-CCCCCC--C
Q ss_conf 898887555333323688887757523258886607899999999----987---521667873899807-720000--3
Q gi|254780202|r 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI----EEQ---WITGEKEGRYCVLTG-GEPLLQ--V 99 (211)
Q Consensus 30 ~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i----~~~---~~~~~~~~~~VviTG-GEPllq--~ 99 (211)
=||.+ +|.+|-|. .+...+.+...||++=+ +.. ......+.-+||+=| ||||+- .
T Consensus 129 vGC~~-----------~C~FC~T~----~gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEPL~Nl~~ 193 (378)
T TIGR00048 129 VGCAL-----------GCTFCATA----KGGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEPLLNLNE 193 (378)
T ss_pred CCCCC-----------CCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHH
T ss_conf 35422-----------55103345----7875214510338999999999834557776654047887467871011799
Q ss_pred CCHHHHHHH-HCCC-----EEEEECCCCCC
Q ss_conf 517899998-6898-----79997278886
Q gi|254780202|r 100 DVPLIQALN-KRGF-----EIAVETNGTIE 123 (211)
Q Consensus 100 l~~L~~~l~-~~g~-----~v~IETnGt~~ 123 (211)
+.+.++-+. +.|| +|+|=|+|-.|
T Consensus 194 vv~a~ei~n~~~g~~is~r~~T~STsGv~~ 223 (378)
T TIGR00048 194 VVKALEILNDDVGLGISKRRITISTSGVVP 223 (378)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf 999999874222036567337887357145
No 38
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=96.23 E-value=0.027 Score=36.32 Aligned_cols=101 Identities=19% Similarity=0.408 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCC---
Q ss_conf 8988875553333236888877575----23258886607899999999987521667873899807-720000351---
Q gi|254780202|r 30 SGCNLWSGREQDRLSAQCRFCDTDF----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV--- 101 (211)
Q Consensus 30 ~GCnL~c~~~~~~~~~~C~~CDT~y----~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTG-GEPllq~l~--- 101 (211)
.+||+ .|-||-=+| .|..+.-.+.+++++.+..+..-... -..-..|=|-| |.||.-...
T Consensus 32 pACNi-----------QCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~-i~QLSVvGIAGPGDpLan~~~Tf~ 99 (461)
T TIGR01290 32 PACNI-----------QCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAE-IPQLSVVGIAGPGDPLANIKKTFQ 99 (461)
T ss_pred CCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHH
T ss_conf 43345-----------545568641667888876201346848999999999850-675315632578862457500089
Q ss_pred HHHHHHHHC-CCEEEEECCCC-CC------CCCCCEEEEE-----CCCCCCCCC
Q ss_conf 789999868-98799972788-86------6788507984-----167774100
Q gi|254780202|r 102 PLIQALNKR-GFEIAVETNGT-IE------PPQGIDWICV-----SPKAGCDLK 142 (211)
Q Consensus 102 ~L~~~l~~~-g~~v~IETnGt-~~------~~~~~d~it~-----SPK~~~~~~ 142 (211)
.|...-+.. ..+..|=|||- +| +.-.+|-||+ +|..+.+++
T Consensus 100 Tl~~v~~~~PDvklCLSTNGL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IY 153 (461)
T TIGR01290 100 TLELVAREVPDVKLCLSTNGLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIY 153 (461)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEEC
T ss_conf 999998517821420012656313465246423888179883140635510306
No 39
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=95.70 E-value=0.039 Score=35.28 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCC-CCHHHHHHHHCCCEEEE-
Q ss_conf 333236888877575232588866078999999999875216678738998077-200003-51789999868987999-
Q gi|254780202|r 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQV-DVPLIQALNKRGFEIAV- 116 (211)
Q Consensus 40 ~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG-EPllq~-l~~L~~~l~~~g~~v~I- 116 (211)
+++...+|.||-. . .....+.-.++..+++.++...........-|.|||| .|--|+ +.+|+..|...|.++||
T Consensus 32 C~pf~~GCDyCt~--~-V~E~~~~F~pl~~v~~~v~~~L~f~~~~~~kitISgGGD~ScYP~l~eL~~~l~~~~lpiHLG 108 (404)
T TIGR03278 32 CPPGTKGCDYCTR--S-VWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLG 108 (404)
T ss_pred CCCCCCCCCHHHH--H-HHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf 8998878611314--3-786548976979999999986345677722899807988441631999999998669835741
Q ss_pred ECCCCC
Q ss_conf 727888
Q gi|254780202|r 117 ETNGTI 122 (211)
Q Consensus 117 ETnGt~ 122 (211)
-|||--
T Consensus 109 YTSGKG 114 (404)
T TIGR03278 109 YTSGKG 114 (404)
T ss_pred CCCCCC
T ss_conf 237889
No 40
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=95.00 E-value=0.18 Score=30.69 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCCCEEEEECCCCCCCC---CCHHHHHHHH---CCCEEEEE
Q ss_conf 688887757523258886607899999999987-5216678738998077200003---5178999986---89879997
Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV---DVPLIQALNK---RGFEIAVE 117 (211)
Q Consensus 45 ~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~~~~~VviTGGEPllq~---l~~L~~~l~~---~g~~v~IE 117 (211)
.+|+|||-. +......... -.+..++.++.. ..........|-|-||-|.+-+ +..|++.+++ .+.+++||
T Consensus 18 ~kC~YCdF~-s~~~~~~~~~-~~~~~~~el~~~~~~~~~~~i~TIyfGGGTPSlL~~~~l~~ll~~i~~~~~~~~EiTiE 95 (353)
T PRK05904 18 YICTFCDFK-RILKTPQTKK-IFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIE 95 (353)
T ss_pred CCCCCCCCC-CCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 708999898-4188768599-99999999999987647995448998998602089999999999999763878359998
Q ss_pred CCC
Q ss_conf 278
Q gi|254780202|r 118 TNG 120 (211)
Q Consensus 118 TnG 120 (211)
.|=
T Consensus 96 aNP 98 (353)
T PRK05904 96 CNP 98 (353)
T ss_pred ECC
T ss_conf 651
No 41
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=94.89 E-value=0.25 Score=29.84 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=51.4
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCC---
Q ss_conf 99976898887555333323688887757523258886607899999999987521667--8738998077200003---
Q gi|254780202|r 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQV--- 99 (211)
Q Consensus 25 vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~VviTGGEPllq~--- 99 (211)
+....-||+. +|.||+....+ + .....+++++.+.++.+...... ....+.+.||.+....
T Consensus 4 ~~~~sRGC~~-----------~C~fC~~~~~~--~-~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (216)
T smart00729 4 LYIITRGCPR-----------RCTFCSFPSAR--G-KLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQ 69 (216)
T ss_pred EEEEECCCCC-----------CCCCCCCCCCC--C-CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH
T ss_conf 9999878198-----------48429817588--9-64575999999999999970897653001100246898889999
Q ss_pred CCHHHHHHHHC-----CCEEEEECCCC
Q ss_conf 51789999868-----98799972788
Q gi|254780202|r 100 DVPLIQALNKR-----GFEIAVETNGT 121 (211)
Q Consensus 100 l~~L~~~l~~~-----g~~v~IETnGt 121 (211)
+..+++.+++. ...+.++++..
T Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (216)
T smart00729 70 LEELLEAIREILGLADDVEITIETRPG 96 (216)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 999999999851435626999970602
No 42
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=94.37 E-value=0.16 Score=31.18 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=62.9
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 731599976-8988875553333236888877575232588866078999999999875216678738998077200003
Q gi|254780202|r 21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 (211)
Q Consensus 21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~ 99 (211)
|++++-+-| -|||. -|.||- ...+|.. .+..++...+++|+.+. ..|+...=.+-==||++..
T Consensus 195 g~rvav~~faRGCPf-----------~C~fCs-QwkFWrr--yR~RdPkKfvdEI~~L~--r~hgVgfF~LADEePT~Nr 258 (506)
T TIGR02026 195 GVRVAVPNFARGCPF-----------TCNFCS-QWKFWRR--YRARDPKKFVDEIEKLV--REHGVGFFILADEEPTVNR 258 (506)
T ss_pred CCEEEEECCCCCCCC-----------CCCCCC-CCHHHHH--HCCCCCCHHHHHHHHHH--HHCCCCEEEECCCCCCCCH
T ss_conf 736987316786976-----------557457-5204454--04788613899999998--6318533663278873016
Q ss_pred --CCHHHHHHHHCCCEEEEECCCC
Q ss_conf --5178999986898799972788
Q gi|254780202|r 100 --DVPLIQALNKRGFEIAVETNGT 121 (211)
Q Consensus 100 --l~~L~~~l~~~g~~v~IETnGt 121 (211)
-.+|++++-++|+.+.|.-.|+
T Consensus 259 ~~f~efCEe~Iar~l~~~v~~gin 282 (506)
T TIGR02026 259 KKFQEFCEELIARNLQIKVTWGIN 282 (506)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 899999999985789569999651
No 43
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=94.37 E-value=0.18 Score=30.77 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC---CCCHHHHHHHH-----CCCEEEE
Q ss_conf 88887757523258886-607899999999987521667873899807720000---35178999986-----8987999
Q gi|254780202|r 46 QCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNK-----RGFEIAV 116 (211)
Q Consensus 46 ~C~~CDT~y~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq---~l~~L~~~l~~-----~g~~v~I 116 (211)
+|+|||- ........ -.-=++.+...++............|-|-||=|.+- .+..|++.+++ ...+++|
T Consensus 14 ~C~yC~f--~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~f~~~~~~EiTi 91 (377)
T PRK08599 14 ICYYCDF--NKVFIENQPVDEYLDALIKEMESTVAKYIRKLKTIYIGGGTPTALSAEQLERLLNAIHRTLPLSDLEEFTF 91 (377)
T ss_pred CCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 6899969--16468987799999999999997655149955799979981000999999999999999769776732799
Q ss_pred ECCCC
Q ss_conf 72788
Q gi|254780202|r 117 ETNGT 121 (211)
Q Consensus 117 ETnGt 121 (211)
|.|=.
T Consensus 92 E~nP~ 96 (377)
T PRK08599 92 EANPG 96 (377)
T ss_pred EECCC
T ss_conf 95515
No 44
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=94.15 E-value=0.16 Score=31.04 Aligned_cols=75 Identities=23% Similarity=0.351 Sum_probs=41.6
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCC---CCHHHHHHHHC-----CCEE
Q ss_conf 688887757-52325888660789999999998752-16678738998077200003---51789999868-----9879
Q gi|254780202|r 45 AQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWI-TGEKEGRYCVLTGGEPLLQV---DVPLIQALNKR-----GFEI 114 (211)
Q Consensus 45 ~~C~~CDT~-y~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~VviTGGEPllq~---l~~L~~~l~~~-----g~~v 114 (211)
.+|.|||-. +......... .=++.+...++.... ........|-|-||=|.+-+ +..|++.+++. +.++
T Consensus 16 ~~C~YCdf~~~~~~~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~ll~~l~~~f~~~~~~Ei 94 (381)
T PRK09057 16 AKCPYCDFNSHVRHAPIDQA-RFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEI 94 (381)
T ss_pred CCCCCCCCCCEECCCCCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 82899949870178878799-99999999999999875999357999799612309999999999999986798657236
Q ss_pred EEECCC
Q ss_conf 997278
Q gi|254780202|r 115 AVETNG 120 (211)
Q Consensus 115 ~IETnG 120 (211)
++|.|=
T Consensus 95 TiE~nP 100 (381)
T PRK09057 95 TLEANP 100 (381)
T ss_pred EEECCH
T ss_conf 772374
No 45
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=93.99 E-value=0.17 Score=30.96 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=57.4
Q ss_pred EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCC
Q ss_conf 477510558401373159997689888755533332368888775752325888660789999999998752---16678
Q gi|254780202|r 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKE 84 (211)
Q Consensus 8 EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~---~~~~~ 84 (211)
++|..+--+....+..++.|-.-=|.- +|.|||. |..........-=++.+...++.... ....+
T Consensus 42 ~~~~~~~~~~~~~~~~~LYiHIPFC~~-----------~C~yC~F-~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~ 109 (447)
T PRK09058 42 AVWQRLLQQTLRARKRLLYIHIPFCRT-----------HCTFCGF-FQNAWNPELVARYTDALIRELAMEADSPLTQSAP 109 (447)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCC-----------CCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 999999835999998779998254158-----------6899988-4848881209999999999999985410126981
Q ss_pred CCEEEEECCCCCC-C--CCCHHHHHHHH-----CCCEEEEECCC
Q ss_conf 7389980772000-0--35178999986-----89879997278
Q gi|254780202|r 85 GRYCVLTGGEPLL-Q--VDVPLIQALNK-----RGFEIAVETNG 120 (211)
Q Consensus 85 ~~~VviTGGEPll-q--~l~~L~~~l~~-----~g~~v~IETnG 120 (211)
...|=|-||=|.+ - .+..|++.+++ .+.+++||.|=
T Consensus 110 i~tvy~GGGTPs~L~~~~l~~l~~~i~~~f~l~~d~EiTiE~nP 153 (447)
T PRK09058 110 IHAVYFGGGTPTALSADDLARLIEALREYLPLAPDCEITLEGRI 153 (447)
T ss_pred EEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 68999808634748999999999999976899888469883387
No 46
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=93.98 E-value=0.37 Score=28.64 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=60.3
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCC
Q ss_conf 731599976-898887555333323688887757523258886607899999999987521667-873899807720000
Q gi|254780202|r 21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQ 98 (211)
Q Consensus 21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~VviTGGEPllq 98 (211)
..|.+.|-. -||+- +|.||-...+ ..+...+..+++.+++.|+.+... | +.+.+-+.-..+.+.
T Consensus 194 ~~p~~~i~TSRGCP~-----------~C~FC~~p~~-~~Gr~~R~RSpe~VvdEIe~l~~~--y~gv~~~~f~DD~Ft~~ 259 (472)
T TIGR03471 194 KHPYISLYTGRGCPS-----------KCTFCLWPQT-VGGHRYRTRSAESVIEEVKYALEN--FPEVREFFFDDDTFTDD 259 (472)
T ss_pred CCCCEEEECCCCCCC-----------CCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCC
T ss_conf 586147641799887-----------7968788210-268866215999999999999986--68975899947766789
Q ss_pred C--CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 3--51789999868987999727888
Q gi|254780202|r 99 V--DVPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 99 ~--l~~L~~~l~~~g~~v~IETnGt~ 122 (211)
. ..++++.+++.|+.-...+-.++
T Consensus 260 ~~r~~eic~~i~~l~i~W~~~~Rv~~ 285 (472)
T TIGR03471 260 KPRAEEIARKLGPLGVTWSCNARANV 285 (472)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99999999999876982787630348
No 47
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=93.31 E-value=0.21 Score=30.27 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=45.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCC-
Q ss_conf 1599976898887555333323688887757523258886--607899999999987521667--87389980772000-
Q gi|254780202|r 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLL- 97 (211)
Q Consensus 23 p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~--~~~~~~~i~~~i~~~~~~~~~--~~~~VviTGGEPll- 97 (211)
.++.|-.-=|.= .|+|||-.- .....+ ...=++.+...++........ ....|=+-||.|.+
T Consensus 35 ~slYiHiPFC~~-----------~C~YC~fn~--~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL 101 (416)
T COG0635 35 LSLYIHIPFCVS-----------KCPYCDFNS--HVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLL 101 (416)
T ss_pred CEEEEECCCHHC-----------CCCCCCCEE--EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 368887232125-----------088788854--5347777399999999999999886227887278999769832677
Q ss_pred C--CCCHHHHHHHH------CCCEEEEECCCC
Q ss_conf 0--35178999986------898799972788
Q gi|254780202|r 98 Q--VDVPLIQALNK------RGFEIAVETNGT 121 (211)
Q Consensus 98 q--~l~~L~~~l~~------~g~~v~IETnGt 121 (211)
. .+..|+..+++ ...+++||.|=+
T Consensus 102 ~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~ 133 (416)
T COG0635 102 SPEQLERLLKALRELFNDLDPDAEITIEANPG 133 (416)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999999999999723578882799950888
No 48
>PRK08949 consensus
Probab=93.24 E-value=0.53 Score=27.59 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=40.3
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCC---CCCHHHHHHHH-----CCCEE
Q ss_conf 688887757-52325888660789999999998752-1667873899807720000---35178999986-----89879
Q gi|254780202|r 45 AQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWI-TGEKEGRYCVLTGGEPLLQ---VDVPLIQALNK-----RGFEI 114 (211)
Q Consensus 45 ~~C~~CDT~-y~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~VviTGGEPllq---~l~~L~~~l~~-----~g~~v 114 (211)
.+|.|||-. ++........+ =++.+...++.... ........|=|-||=|.+- .+..|++.+++ .+.++
T Consensus 18 ~~C~YCdf~s~~~~~~~~~~~-Y~~aL~~El~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~f~~~~~~Ei 96 (378)
T PRK08949 18 QKCPYCDFNSHALKGEVPHQD-YVQHLLADLDADVAYAQGRELHTIFIGGGTPSLLSAEAMQTLLDGVRARLPFAADAEI 96 (378)
T ss_pred CCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 718999998632888875999-9999999999865650797687999728232007999999999999986798767058
Q ss_pred EEECCC
Q ss_conf 997278
Q gi|254780202|r 115 AVETNG 120 (211)
Q Consensus 115 ~IETnG 120 (211)
++|+|=
T Consensus 97 TiE~nP 102 (378)
T PRK08949 97 TMEANP 102 (378)
T ss_pred EEECCC
T ss_conf 995582
No 49
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=93.15 E-value=0.35 Score=28.82 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC---CCHHHHHHHHC----CCEEEE
Q ss_conf 688887757523258886-6078999999999875216678738998077200003---51789999868----987999
Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKR----GFEIAV 116 (211)
Q Consensus 45 ~~C~~CDT~y~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~---l~~L~~~l~~~----g~~v~I 116 (211)
.+|+|||. ........ ..-=++.+...++... .....+.|=|-||=|.+-+ +..|++.+++. +.+++|
T Consensus 15 ~~C~yC~f--~~~~~~~~~~~~Y~~~L~~Ei~~~~--~~~~i~tiy~GGGTPs~l~~~~l~~l~~~i~~~~~~~~~E~Ti 90 (374)
T PRK05799 15 QKCLYCDF--PSYSGKEDLMMEYIKALSKEIVNKT--KNKKIKSIFIGGGTPSYLSLEALEILLKTIKKLNKKENLEFTV 90 (374)
T ss_pred CCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 85899979--4748870069999999999999765--7981549997996502299999999999998568887845899
Q ss_pred ECCCC
Q ss_conf 72788
Q gi|254780202|r 117 ETNGT 121 (211)
Q Consensus 117 ETnGt 121 (211)
|+|=.
T Consensus 91 E~nP~ 95 (374)
T PRK05799 91 EGNPG 95 (374)
T ss_pred EECCC
T ss_conf 85667
No 50
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=92.97 E-value=0.67 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=27.3
Q ss_pred CCCCEEEEECCCCCCC---CCCHHHHHHHH-----CCCEEEEECCCC
Q ss_conf 7873899807720000---35178999986-----898799972788
Q gi|254780202|r 83 KEGRYCVLTGGEPLLQ---VDVPLIQALNK-----RGFEIAVETNGT 121 (211)
Q Consensus 83 ~~~~~VviTGGEPllq---~l~~L~~~l~~-----~g~~v~IETnGt 121 (211)
.....|=|-||=|.+- .+..|++.+++ .+.+++||.|=.
T Consensus 65 ~~i~tiy~GGGTPSlL~~~~l~~ll~~l~~~f~~~~~~EiTiE~nP~ 111 (399)
T PRK07379 65 QPLQTVFFGGGTPSLLPVEQLERILLTLDQRFGIAPDAEISLEIDPG 111 (399)
T ss_pred CCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 96218996995567489999999999999868999885799984589
No 51
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=92.88 E-value=0.34 Score=28.90 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHH-HCCCCCCCEEEEECCCCCCCC---CCHHHHHHHH-----CC
Q ss_conf 6888877575232588866078----999999999875-216678738998077200003---5178999986-----89
Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKGGRYN----VDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQV---DVPLIQALNK-----RG 111 (211)
Q Consensus 45 ~~C~~CDT~y~~~~~~~~~~~~----~~~i~~~i~~~~-~~~~~~~~~VviTGGEPllq~---l~~L~~~l~~-----~g 111 (211)
.+|+|||-. +. ... .... ++.+...++... .........|=|-||=|.+-+ +..|++.+++ .+
T Consensus 18 ~~C~YC~f~-~~-~~~--~~~~~~~Y~~aL~~ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~~i~~~f~~~~~ 93 (378)
T PRK05660 18 QKCPYCDFN-SH-ALK--GEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPD 93 (378)
T ss_pred CCCCCCCCC-CC-CCC--CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 769999696-50-488--87769999999999999987761797576999789533308999999999999985798777
Q ss_pred CEEEEECCC
Q ss_conf 879997278
Q gi|254780202|r 112 FEIAVETNG 120 (211)
Q Consensus 112 ~~v~IETnG 120 (211)
.+++||.|=
T Consensus 94 ~EiTiE~nP 102 (378)
T PRK05660 94 AEITMEANP 102 (378)
T ss_pred CEEEEECCC
T ss_conf 148984570
No 52
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=92.87 E-value=0.24 Score=29.87 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCCCCEEEEECCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 1373159997689888--75553333236888877575232588866078999999999875216678738998077200
Q gi|254780202|r 19 HAGRVAVFCRFSGCNL--WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 (211)
Q Consensus 19 ~~G~p~vFiRl~GCnL--~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPl 96 (211)
..|-...|+...==|+ -|. .+|.||-- |......++..++.++|.+.++++... +++.|.|+|||-=
T Consensus 50 ~~~~~vtyv~n~~in~TN~C~-------~~C~fCaF-~~~~~~~~~y~Ls~eeI~~~~~~~~~~---G~~Evli~gG~~p 118 (370)
T COG1060 50 RVGDGVTYVVNRNINYTNICV-------NDCTFCAF-YRKPGDPKAYTLSPEEILEEVREAVKR---GITEVLIVGGEHP 118 (370)
T ss_pred CCCCCEEEEEEECCCCCHHHC-------CCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCCCC
T ss_conf 368857999752578532331-------79972623-457888655316999999999999875---9869998057687
Q ss_pred CCCC---CHHHHHHHH
Q ss_conf 0035---178999986
Q gi|254780202|r 97 LQVD---VPLIQALNK 109 (211)
Q Consensus 97 lq~l---~~L~~~l~~ 109 (211)
-... ..+++.+++
T Consensus 119 ~~~~~y~~~~~~~ik~ 134 (370)
T COG1060 119 ELSLEYYEELFRTIKE 134 (370)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 7436799999999988
No 53
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=92.83 E-value=0.44 Score=28.15 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCEEEEECCCCCCC-C--CCHHHHHHHH---CCCEEEE
Q ss_conf 68888775752325888660789999999998752--1667873899807720000-3--5178999986---8987999
Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQ-V--DVPLIQALNK---RGFEIAV 116 (211)
Q Consensus 45 ~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~--~~~~~~~~VviTGGEPllq-~--l~~L~~~l~~---~g~~v~I 116 (211)
.+|+|||-. +.........-=++.+...++.... ........|=|-||=|.+- + +..|++.+++ ...++++
T Consensus 12 ~~C~YCdF~-~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~i~tiy~GGGTPS~l~~~~l~~ll~~l~~~~~~~~EiTi 90 (351)
T PRK08446 12 SKCGYCAFN-SYEDKFDLKEEYFQALCLDLKFQLKQFIQDEKIESVFIGGGTPSTVSAKLYEPIFEIIYPYLSKDCEITT 90 (351)
T ss_pred CCCCCCCCC-CEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 808999792-8517956799999999999999987626899366999689745637999999999999976698835999
Q ss_pred ECCCC
Q ss_conf 72788
Q gi|254780202|r 117 ETNGT 121 (211)
Q Consensus 117 ETnGt 121 (211)
|.|=.
T Consensus 91 E~nP~ 95 (351)
T PRK08446 91 EANPN 95 (351)
T ss_pred EECCC
T ss_conf 76768
No 54
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=92.81 E-value=0.39 Score=28.51 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCCC---CCHHHHHHHHC-----CCEEE
Q ss_conf 688887757523258886607899999999987521-6678738998077200003---51789999868-----98799
Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQV---DVPLIQALNKR-----GFEIA 115 (211)
Q Consensus 45 ~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~VviTGGEPllq~---l~~L~~~l~~~-----g~~v~ 115 (211)
.+|+|||-. +.........--++.+...++..... .......|=|-||=|.+-+ +..|++.+++. .-+++
T Consensus 23 ~~C~yC~f~-~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~~l~~~~~~~~~~EiT 101 (390)
T PRK06582 23 SKCPYCDFN-SHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEIT 101 (390)
T ss_pred CCCCCCCCC-CEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 808999390-7148858899999999999999887647980579998985135289999999999999857888873489
Q ss_pred EECCC
Q ss_conf 97278
Q gi|254780202|r 116 VETNG 120 (211)
Q Consensus 116 IETnG 120 (211)
+|+|=
T Consensus 102 iE~nP 106 (390)
T PRK06582 102 LETNP 106 (390)
T ss_pred EEECC
T ss_conf 98443
No 55
>PRK07094 biotin synthase; Provisional
Probab=92.78 E-value=0.94 Score=25.87 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC---CCHHHHHHHH-CCCEEEE
Q ss_conf 6888877575232588866078999999999875216678738998077200003---5178999986-8987999
Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNK-RGFEIAV 116 (211)
Q Consensus 45 ~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~---l~~L~~~l~~-~g~~v~I 116 (211)
..|.||--. ........-.++.++|++.+.+... .+.+.++++|||-.-+. +..+++.+++ .+..|.+
T Consensus 51 edC~yC~~~-~~n~~~~rY~Ls~eeI~~~A~~a~~---~G~~~~~lqsG~~~~~~~e~~~~ii~~Ik~~~~l~i~l 122 (323)
T PRK07094 51 RNCLYCGLR-RSNKNIKRYRLSPEEILECAKKAYE---LGYGTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITL 122 (323)
T ss_pred CCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999347876-6789977437999999999999998---69988999648998866999999999986059945997
No 56
>PRK08807 consensus
Probab=92.10 E-value=0.49 Score=27.78 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCC---CCHHHHHHHH-----CCCE
Q ss_conf 6888877575232588866--0789999999998752-16678738998077200003---5178999986-----8987
Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKGG--RYNVDQLADLIEEQWI-TGEKEGRYCVLTGGEPLLQV---DVPLIQALNK-----RGFE 113 (211)
Q Consensus 45 ~~C~~CDT~y~~~~~~~~~--~~~~~~i~~~i~~~~~-~~~~~~~~VviTGGEPllq~---l~~L~~~l~~-----~g~~ 113 (211)
.+|.|||-. +. ...... .--++.+...++.... ........|=|-||-|.+-+ +..|++.+++ .+.+
T Consensus 20 ~~C~YCdf~-s~-~~~~~~~~~~y~~~l~~ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~~~E 97 (385)
T PRK08807 20 RKCPYCDFN-SH-AAKGALPFDAYVDALIRDLDADLPLVWGRVVHSVFFGGGTPSLFPPEAIDRFLQAAAARLRFAPNLE 97 (385)
T ss_pred CCCCCCCCC-CC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 858999894-41-0789876999999999999974455069844389979955573799999999999999669776716
Q ss_pred EEEECCC
Q ss_conf 9997278
Q gi|254780202|r 114 IAVETNG 120 (211)
Q Consensus 114 v~IETnG 120 (211)
++||+|=
T Consensus 98 ~TiE~nP 104 (385)
T PRK08807 98 ITLETNP 104 (385)
T ss_pred EEEECCC
T ss_conf 9995272
No 57
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=91.74 E-value=0.81 Score=26.34 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC---CCHHHHHHHHCCCEEEE
Q ss_conf 888877575232588866078999999999875216678738998077200003---51789999868987999
Q gi|254780202|r 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 46 ~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~---l~~L~~~l~~~g~~v~I 116 (211)
.|.||-- +........-.++++++.+.+.+... .++.-|.++||+---.+ ..++++.+++.--.+++
T Consensus 52 ~C~fCaF-~r~p~~~~ay~lt~eei~~~~~~a~~---~G~~Ei~~~gG~~Pel~~~~y~e~~r~ik~~~p~~~i 121 (343)
T TIGR03551 52 GCGFCAF-RKRKGDADAYLLSLEEIAERAAEAWK---AGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHI 121 (343)
T ss_pred CCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 8976778-66899986600799999999999997---6996899825868788888999999999874883010
No 58
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=91.53 E-value=0.3 Score=29.25 Aligned_cols=80 Identities=28% Similarity=0.511 Sum_probs=52.4
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC------C
Q ss_conf 731599976-898887555333323688887757523258886607899999999987521667873899807------7
Q gi|254780202|r 21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG------G 93 (211)
Q Consensus 21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTG------G 93 (211)
|.-=-||.- =|||- .|.||==+|+- |....-.+...+++.|+.+.. .+.+=||||| |
T Consensus 208 ~~~RAFvKVQdGCn~-----------~CsyC~IP~~R--Gt~~RS~~~e~~~~~v~~Lv~---~gy~EvVLTGvnlg~Yg 271 (492)
T TIGR01579 208 ERTRAFVKVQDGCNK-----------FCSYCIIPFAR--GTRSRSVPLEKILEQVKELVA---KGYKEVVLTGVNLGSYG 271 (492)
T ss_pred CCCCCEEEEECCCCC-----------CCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHH---CCCEEEEEEEECCCCCC
T ss_conf 788625788758898-----------84410140337--897641667899999999973---77559998400144456
Q ss_pred CCC-CC--CCCHHHHHHHH-C-CC-EEEE
Q ss_conf 200-00--35178999986-8-98-7999
Q gi|254780202|r 94 EPL-LQ--VDVPLIQALNK-R-GF-EIAV 116 (211)
Q Consensus 94 EPl-lq--~l~~L~~~l~~-~-g~-~v~I 116 (211)
+=+ -+ .+..|++.+.. . |. +|-|
T Consensus 272 ~d~~~~g~~L~~Ll~~i~~q~~g~~RiRl 300 (492)
T TIGR01579 272 DDLGENGSSLAKLLEQILKQIPGIERIRL 300 (492)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 88876676089999999864688346763
No 59
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=91.49 E-value=0.47 Score=27.93 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=38.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 1373159997689888755533332368888775752325888660789999999998752166787389980772
Q gi|254780202|r 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 (211)
Q Consensus 19 ~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGE 94 (211)
+.|.-..|++=-==|+ .+.=..+|.||- |.- +......++.+|+.+.+++... .++.-|.|+||+
T Consensus 3 ~~G~~VTy~~n~~In~-----TNiC~~~C~fCa--F~~-~~~~a~~ls~eev~~~~~ea~~---~G~tEvl~~gG~ 67 (336)
T PRK06245 3 NMSKIVTYSRNVFIPL-----TYECRNRCGYCT--FRP-DPGEASLLSPEEVREILERGQD---AGCTEALFTFGE 67 (336)
T ss_pred CCCCEEEEECCCCCCC-----CCCCCCCCCCCC--CCC-CCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCC
T ss_conf 8898789818626167-----754026882586--746-8875687799999999999997---698399980578
No 60
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=91.39 E-value=0.5 Score=27.73 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=54.3
Q ss_pred CCCCEEEEEECCCCCCCCCCC--------CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CHHHHH
Q ss_conf 630124477510558401373--------1599976898887555333323688887757523258886607--899999
Q gi|254780202|r 2 KLYSIKEIFLTLQGEGGHAGR--------VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLA 71 (211)
Q Consensus 2 ~~~~i~EiF~SiQGEG~~~G~--------p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~--~~~~i~ 71 (211)
..||=.--|...-|+..+... .++.|-.-=|.= +|+|||. |+... ...... =++.+.
T Consensus 17 ~sYP~a~~f~~~~~~~~~~~~~~~~~~~~LsLYiHiPFC~~-----------~C~YC~f-~~~~~-~~~~~~~~Y~~aL~ 83 (436)
T PRK08208 17 YSYPHKTAYRELEPNVSLSEVWPREYEDALHLYIHIPFCES-----------RCGFCNL-FTCTG-ADNEFIDSYLDALI 83 (436)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCC-----------CCCCCCC-CCCCC-CCHHHHHHHHHHHH
T ss_conf 68998211688887676999984399997499987044079-----------5889998-37668-98338999999999
Q ss_pred HHHHHHHHC-CCCCCCEEEEECCCCCCC---CCCHHHHHHHHC-C-----CEEEEECCC
Q ss_conf 999987521-667873899807720000---351789999868-9-----879997278
Q gi|254780202|r 72 DLIEEQWIT-GEKEGRYCVLTGGEPLLQ---VDVPLIQALNKR-G-----FEIAVETNG 120 (211)
Q Consensus 72 ~~i~~~~~~-~~~~~~~VviTGGEPllq---~l~~L~~~l~~~-g-----~~v~IETnG 120 (211)
..++..... .......|=|-||=|.+- .+..|++.+++. + .++++|.|=
T Consensus 84 ~Ei~~~~~~~~~~~~~tiy~GGGTPS~L~~~~l~~ll~~l~~~f~~~~~~~EiTiE~nP 142 (436)
T PRK08208 84 RQARQVALALGGVHFASFAVGGGTPTLLNIAQLEKLFFSVFDVLGVDLWNIPKSVETSP 142 (436)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 99999876638983568996794322199999999999999858998467159998663
No 61
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=90.92 E-value=1.5 Score=24.50 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=45.8
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCHHHHHHHHHHHHH---CCCCCCCEEEEECCCCCCC
Q ss_conf 59997689888755533332368888775-75232588866-0789999999998752---1667873899807720000
Q gi|254780202|r 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGG-RYNVDQLADLIEEQWI---TGEKEGRYCVLTGGEPLLQ 98 (211)
Q Consensus 24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT-~y~~~~~~~~~-~~~~~~i~~~i~~~~~---~~~~~~~~VviTGGEPllq 98 (211)
++.|-.-=|+= +|.|||- .|+. ...... .-=++.+...|+.... .......-|=|-||=|.+=
T Consensus 174 SLYIHIPFC~~-----------kC~YCdF~s~~i-~~~~~~v~~Yl~aL~kEI~~~~~~l~~~~~~i~TIY~GGGTPS~L 241 (497)
T PRK08207 174 SIYIGIPFCPT-----------RCLYCSFPSYPI-NGRKGLVEPYLEALHYEIEEIGKYLKEKGLKIETIYFGGGTPTSI 241 (497)
T ss_pred EEEEEECCCCC-----------CCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECEEEECCCCCCCC
T ss_conf 99998189589-----------878999803115-776331999999999999999987623798035699799810029
Q ss_pred ---CCCHHHHHHHHC-----C-CEEEEECC--CCCC
Q ss_conf ---351789999868-----9-87999727--8886
Q gi|254780202|r 99 ---VDVPLIQALNKR-----G-FEIAVETN--GTIE 123 (211)
Q Consensus 99 ---~l~~L~~~l~~~-----g-~~v~IETn--Gt~~ 123 (211)
.+..|++.+.+. . -++++|.| ||+.
T Consensus 242 s~~ql~~ll~~i~~~F~~~~~~~EiTvEanRPdtit 277 (497)
T PRK08207 242 TAEEFEKLLEEIYESFPDVKNVKEFTVEAGRPDTIT 277 (497)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 999999999999986576899977999787989629
No 62
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=90.88 E-value=0.88 Score=26.07 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=47.2
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHC--CCCCCCEEEEECCCCCCC-
Q ss_conf 59997689888755533332368888775752325888660--7899999999987521--667873899807720000-
Q gi|254780202|r 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQ- 98 (211)
Q Consensus 24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~--~~~~~i~~~i~~~~~~--~~~~~~~VviTGGEPllq- 98 (211)
++.|-.-=|.= .|.|||-... -...... -=++.+...++..... .......|-|-||=|.+-
T Consensus 52 sLYiHIPFC~~-----------~C~YC~f~~~--~~~~~~~~~~Yl~~L~~Ei~~~~~~~~~~~~v~ti~~GGGTPs~L~ 118 (453)
T PRK13347 52 SLYLHVPFCRS-----------LCWFCGCNTI--ITQRDAPVEAYVAALIREIRLVAALLPQRRRVSQLHWGGGTPTILN 118 (453)
T ss_pred EEEEECCCCCC-----------CCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCC
T ss_conf 99985277168-----------0899989733--7788667999999999999998876278980789997884828599
Q ss_pred --CCCHHHHHHHH-----CCCEEEEECCC
Q ss_conf --35178999986-----89879997278
Q gi|254780202|r 99 --VDVPLIQALNK-----RGFEIAVETNG 120 (211)
Q Consensus 99 --~l~~L~~~l~~-----~g~~v~IETnG 120 (211)
.+..|++.+++ .+.+++||.|=
T Consensus 119 ~~~l~~ll~~l~~~f~~~~~~EitiE~nP 147 (453)
T PRK13347 119 PDQFERLMAALRDAFDFAPEAEIAVEIDP 147 (453)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 99999999999975899999669998677
No 63
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=90.77 E-value=0.86 Score=26.15 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=39.9
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCC---CCCHHHHHHHHC-----CCEE
Q ss_conf 68888775-7523258886607899999999987521-667873899807720000---351789999868-----9879
Q gi|254780202|r 45 AQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQ---VDVPLIQALNKR-----GFEI 114 (211)
Q Consensus 45 ~~C~~CDT-~y~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~VviTGGEPllq---~l~~L~~~l~~~-----g~~v 114 (211)
.+|.|||- .++.........-=++.+...++..... ...+...|=|-||=|.+- .+..|++.+++. +-++
T Consensus 31 ~~C~YC~f~s~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~l~~~l~~~f~~~~~~E~ 110 (393)
T PRK08898 31 RKCPYCDFNSHEWKGGGIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEI 110 (393)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 60999988142278788679999999999999757770698677999768424638999999999999985897657316
Q ss_pred EEECCC
Q ss_conf 997278
Q gi|254780202|r 115 AVETNG 120 (211)
Q Consensus 115 ~IETnG 120 (211)
+||.|=
T Consensus 111 tiE~nP 116 (393)
T PRK08898 111 TLEANP 116 (393)
T ss_pred EEEECC
T ss_conf 887362
No 64
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=90.65 E-value=1 Score=25.70 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=40.5
Q ss_pred CCCCCCCC-CCCCCCCCCCCC--CCHHHHHHHHHHHHHC---CCCCCCEEEEECCCCCCCC---CCHHHHHHHHC-----
Q ss_conf 68888775-752325888660--7899999999987521---6678738998077200003---51789999868-----
Q gi|254780202|r 45 AQCRFCDT-DFVGIQGTKGGR--YNVDQLADLIEEQWIT---GEKEGRYCVLTGGEPLLQV---DVPLIQALNKR----- 110 (211)
Q Consensus 45 ~~C~~CDT-~y~~~~~~~~~~--~~~~~i~~~i~~~~~~---~~~~~~~VviTGGEPllq~---l~~L~~~l~~~----- 110 (211)
.+|.|||- .|+..+...... -=++.+...++..... .......|=|-||=|.+-+ +..|++.+++.
T Consensus 14 ~~C~yC~f~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~l~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~~i~~~f~~~~ 93 (376)
T PRK05628 14 TRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP 93 (376)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 60899979573365247876799999999999999987617789657899978944664899999999999997589998
Q ss_pred CCEEEEECCC
Q ss_conf 9879997278
Q gi|254780202|r 111 GFEIAVETNG 120 (211)
Q Consensus 111 g~~v~IETnG 120 (211)
.-++++|.|=
T Consensus 94 ~~EiTiE~nP 103 (376)
T PRK05628 94 DAEVTTEANP 103 (376)
T ss_pred CCEEEEEECC
T ss_conf 8569998342
No 65
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=90.65 E-value=0.41 Score=28.36 Aligned_cols=93 Identities=23% Similarity=0.375 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10558401373159997689888755533332368888775752----32588866-07899999999987521667873
Q gi|254780202|r 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV----GIQGTKGG-RYNVDQLADLIEEQWITGEKEGR 86 (211)
Q Consensus 12 SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~----~~~~~~~~-~~~~~~i~~~i~~~~~~~~~~~~ 86 (211)
.+.|--..--..++|.-..||.. .|.||-..+. ......+. .-..+..++.+.+. ....
T Consensus 121 ~~p~~~~~y~~~~~~~~~~~c~~-----------~c~yc~~~w~~~~~~~~~~~g~p~~~~~~~~~~~~~~-----~~~~ 184 (357)
T TIGR00238 121 PVPGLTHRYPNRALFLPKGGCAV-----------NCRYCFRNWLVRHFPYKEGPGNPKKKWEAALDYIAEH-----PELE 184 (357)
T ss_pred CCCHHHHHHHCEEEEEECCCCCH-----------HHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCHH
T ss_conf 21024442100134664166402-----------2333332001100451003677367899999987404-----1023
Q ss_pred EEEEECCCCCCCC---CCHHHHHHHHCCCE--EEEECCC
Q ss_conf 8998077200003---51789999868987--9997278
Q gi|254780202|r 87 YCVLTGGEPLLQV---DVPLIQALNKRGFE--IAVETNG 120 (211)
Q Consensus 87 ~VviTGGEPllq~---l~~L~~~l~~~g~~--v~IETnG 120 (211)
-++++||+|++-. +.-++..+.+..+- +.+.|.-
T Consensus 185 ~~~~~ggdp~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (357)
T TIGR00238 185 EVLFSGGDPLLLKDHELEWLLKELESIPHLEGLRIGTRL 223 (357)
T ss_pred HHEEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEECCCC
T ss_conf 320107876310057899999987533401002202322
No 66
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=90.58 E-value=0.59 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 888877575232-5888660789999999998752166787389980772
Q gi|254780202|r 46 QCRFCDTDFVGI-QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 (211)
Q Consensus 46 ~C~~CDT~y~~~-~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGE 94 (211)
+|.||- |.-. .......++.+|+.+.+.++.. .++.-|.|+||+
T Consensus 17 ~C~FCa--F~r~~~~~~ay~ls~eei~~~~~ea~~---~G~tEv~i~gG~ 61 (322)
T TIGR03550 17 RCGYCT--FRRPPGELEAALLSPEEVLEILRKGAA---AGCTEALFTFGE 61 (322)
T ss_pred CCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCC
T ss_conf 696788--516899988774799999999999997---798799964886
No 67
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=90.37 E-value=0.81 Score=26.32 Aligned_cols=85 Identities=14% Similarity=0.248 Sum_probs=42.7
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHCC-CCCCCEEEEECCCCCCC---C
Q ss_conf 9997689888755533332368888775752325888660789999999-99875216-67873899807720000---3
Q gi|254780202|r 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL-IEEQWITG-EKEGRYCVLTGGEPLLQ---V 99 (211)
Q Consensus 25 vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~-i~~~~~~~-~~~~~~VviTGGEPllq---~ 99 (211)
+.|-.-=|.= +|+|||. ++.......-..-++.+... +.+..... ......|=|-||=|.+- .
T Consensus 9 LYiHIPFC~~-----------~C~yC~f-~~~~~~~~~~~~Y~~al~~e~~~~~~~~~~~~~~~tiy~GGGTPs~L~~~~ 76 (374)
T PRK06294 9 LYIHIPFCSK-----------KCHYCSF-YTIPYKEESVSLYCNAVIKEGLKKLAPLRCTHFIDTVFFGGGTPSLVPPDL 76 (374)
T ss_pred EEEECCCCCC-----------CCCCCCC-EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHH
T ss_conf 9986278998-----------7999988-102488233999999999999999764348981799997897016388999
Q ss_pred CCHHHHHHHHC-CCEEEEECCCC
Q ss_conf 51789999868-98799972788
Q gi|254780202|r 100 DVPLIQALNKR-GFEIAVETNGT 121 (211)
Q Consensus 100 l~~L~~~l~~~-g~~v~IETnGt 121 (211)
+..|++.+... ..+++||.|=.
T Consensus 77 L~~ll~~i~~~~~~E~TiE~nP~ 99 (374)
T PRK06294 77 IQDILKTLEAPHATEITLEANPE 99 (374)
T ss_pred HHHHHHHHCCCCCCEEEEEECCC
T ss_conf 99999974016884389985347
No 68
>PRK06256 biotin synthase; Validated
Probab=90.21 E-value=0.48 Score=27.90 Aligned_cols=67 Identities=16% Similarity=0.440 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-CC---CCHHHHHHHHC-CCEEEE
Q ss_conf 8888775752325---888660789999999998752166787389980772000-03---51789999868-987999
Q gi|254780202|r 46 QCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV---DVPLIQALNKR-GFEIAV 116 (211)
Q Consensus 46 ~C~~CDT~y~~~~---~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll-q~---l~~L~~~l~~~-g~~v~I 116 (211)
.|.||- ++... ......++.+++++.+......+ ..+.+.+|||+..- .. +...++.+++. +.++.+
T Consensus 70 dC~yCa--qs~~~~~~~~~y~ll~~eeI~~~a~~a~~~G--~~~~~lvtsg~~~~~~~~e~v~~~i~~Ik~~~~l~i~~ 144 (325)
T PRK06256 70 DCGYCS--QSAGSSSPIYRYAWLDIEEIVEAAKEAIENG--AGRFCIVASGRGPSGREVDQVIEAVKAIKEETDLEICA 144 (325)
T ss_pred CCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 996298--9076789974127899999999999999869--98899986045897678999999999986228936887
No 69
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.88 E-value=1.3 Score=24.85 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=61.4
Q ss_pred CCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 13731599976-89888755533332368888775752325888660789999999998752166787389980772000
Q gi|254780202|r 19 HAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 (211)
Q Consensus 19 ~~G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll 97 (211)
+.+...-||.. -|||= +|.||=++|+-. .....++++|++.++.+... +.+-|+|||=.--.
T Consensus 140 ~~~~~~A~v~I~eGCn~-----------~CtfCiiP~~RG---~~rSr~~e~Il~ev~~Lv~~---G~kEI~L~gqdv~a 202 (437)
T COG0621 140 REGGVRAFVKIQEGCNK-----------FCTFCIIPYARG---KERSRPPEDILKEVKRLVAQ---GVKEIVLTGQDVNA 202 (437)
T ss_pred CCCCEEEEEEHHCCCCC-----------CCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHC---CCEEEEEEEEEHHH
T ss_conf 67874799881208678-----------888064053678---75577989999999999988---97499999881101
Q ss_pred C---------CCCHHHHHHHHC-C-CEEEEECCCCCCC
Q ss_conf 0---------351789999868-9-8799972788866
Q gi|254780202|r 98 Q---------VDVPLIQALNKR-G-FEIAVETNGTIEP 124 (211)
Q Consensus 98 q---------~l~~L~~~l~~~-g-~~v~IETnGt~~~ 124 (211)
| .+..|++.+.+. | +++-+-|.=-.+.
T Consensus 203 YG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~ 240 (437)
T COG0621 203 YGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEF 240 (437)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHC
T ss_conf 04467777668999999996079910899935880011
No 70
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=88.97 E-value=0.93 Score=25.93 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=40.8
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCC----CCCCCEEEEECCCCCCC---CCCHHHHHHHH------C
Q ss_conf 68888775-75232588866078999999999875216----67873899807720000---35178999986------8
Q gi|254780202|r 45 AQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG----EKEGRYCVLTGGEPLLQ---VDVPLIQALNK------R 110 (211)
Q Consensus 45 ~~C~~CDT-~y~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~~~~~VviTGGEPllq---~l~~L~~~l~~------~ 110 (211)
..|+|||- +|.-.......++.-.=..++...+...+ ...-+-|=|=||=|..- .+..|++.+.+ .
T Consensus 12 ~kC~YCdFNsy~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~~I~~~~~P~sd 91 (371)
T TIGR00539 12 QKCGYCDFNSYAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLEEIKKQLKPLSD 91 (371)
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 75888653324554278567999999999999998604432367655688568874146899999999998752174310
Q ss_pred CCEEEEECCC
Q ss_conf 9879997278
Q gi|254780202|r 111 GFEIAVETNG 120 (211)
Q Consensus 111 g~~v~IETnG 120 (211)
..++++|.|=
T Consensus 92 ~~Eit~eANP 101 (371)
T TIGR00539 92 DIEITVEANP 101 (371)
T ss_pred CCCEEECCCC
T ss_conf 2111110782
No 71
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=88.96 E-value=0.43 Score=28.22 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=45.7
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC---CC
Q ss_conf 59997689888755533332368888775752325---8886607899999999987521667873899807720---00
Q gi|254780202|r 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP---LL 97 (211)
Q Consensus 24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~---~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEP---ll 97 (211)
.+++...+|+= .|.||- ++... ......++.++|++........+ ..+.+..|+|+= -+
T Consensus 53 ii~iktg~c~e-----------dC~yC~--qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~G--a~r~c~~aagr~~~~~~ 117 (335)
T COG0502 53 LISIKTGCCPE-----------DCAYCS--QSARYKTGVKARKLMEVEEILEAAKKAKAAG--ATRFCMGAAGRGPGRDM 117 (335)
T ss_pred EEEEECCCCCC-----------CCCCCC--CCCCCCCCCCHHHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCH
T ss_conf 88733488898-----------898760--0104767982331289999999999999749--95079987316777448
Q ss_pred CCCCHHHHHHH-HCCCE
Q ss_conf 03517899998-68987
Q gi|254780202|r 98 QVDVPLIQALN-KRGFE 113 (211)
Q Consensus 98 q~l~~L~~~l~-~~g~~ 113 (211)
..+.+.++..+ +.|.+
T Consensus 118 ~~i~~~v~~Vk~~~~le 134 (335)
T COG0502 118 EEVVEAIKAVKEELGLE 134 (335)
T ss_pred HHHHHHHHHHHHHCCCH
T ss_conf 99999999999846928
No 72
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=88.67 E-value=1.8 Score=23.93 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=43.8
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--CCC
Q ss_conf 99976898887555333323688887757523258886-607899999999987521667873899807720000--351
Q gi|254780202|r 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDV 101 (211)
Q Consensus 25 vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq--~l~ 101 (211)
+.|-.-=|.= .|+|||. ........ ..-=++.+...++.... .......|=|-||=|.+= .+.
T Consensus 46 LYiHIPFC~~-----------~C~YC~F--~~~~~~~~~~~~Y~~aL~kEi~~~~~-~~~~i~tiy~GGGTPs~L~~~l~ 111 (424)
T PRK08629 46 LYAHVPFCHT-----------LCPYCSF--HRFLFKEDKARAYFISLRKEMEMVKE-LGYDFESMYVGGGTTTILEDELA 111 (424)
T ss_pred EEEECCCCCC-----------CCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCHHHCCHHHHH
T ss_conf 9989054079-----------8889989--58268824199999999999999885-39983769977971225799999
Q ss_pred HHHHHHHHC-C-CEEEEECCC
Q ss_conf 789999868-9-879997278
Q gi|254780202|r 102 PLIQALNKR-G-FEIAVETNG 120 (211)
Q Consensus 102 ~L~~~l~~~-g-~~v~IETnG 120 (211)
.+++.+++. . -++++|.|=
T Consensus 112 ~~l~~~~~~f~~~EiTiE~nP 132 (424)
T PRK08629 112 KTLELAKKLFSIKEVSCESDP 132 (424)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999864898249995386
No 73
>PRK07360 FO synthase subunit 2; Reviewed
Probab=88.64 E-value=1.5 Score=24.51 Aligned_cols=76 Identities=12% Similarity=0.224 Sum_probs=46.5
Q ss_pred CCCCEEEEECCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 373159997689------88875553333236888877575232588866078999999999875216678738998077
Q gi|254780202|r 20 AGRVAVFCRFSG------CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 (211)
Q Consensus 20 ~G~p~vFiRl~G------CnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG 93 (211)
.|....|++-.- |.. .|.||-- +..-.......++.+|+.+.+.+... .++.-|.|+||
T Consensus 52 ~Gd~Vtfv~n~~In~TNiC~~-----------~C~fCaF-~r~p~~~~ay~ls~eEi~~~~~~a~~---~G~tEv~~~gG 116 (375)
T PRK07360 52 VGDTVTYVVNRNINFTNICEG-----------HCGFCAF-RRDKGDPGAFWLDIEEILEKAAEAVK---AGATEVCIQGG 116 (375)
T ss_pred CCCEEEEEEEECCCHHHHHHC-----------CCCCCCC-CCCCCCCCCEECCHHHHHHHHHHHHH---CCCEEEEECCC
T ss_conf 699699982526656179870-----------8982734-07889976602789999999999986---58808997688
Q ss_pred CC-CC-CC------CCHHHHHHHHC
Q ss_conf 20-00-03------51789999868
Q gi|254780202|r 94 EP-LL-QV------DVPLIQALNKR 110 (211)
Q Consensus 94 EP-ll-q~------l~~L~~~l~~~ 110 (211)
+- =+ ++ -..+++.+++.
T Consensus 117 ~~P~l~~~~~~~~~y~~~~~~ik~~ 141 (375)
T PRK07360 117 LHPAADLNGSSLDFYLEILKAIKAE 141 (375)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7834454645189999999999986
No 74
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=88.40 E-value=2.3 Score=23.22 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=48.1
Q ss_pred CCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHC--CCCCCCEEEEECCCC
Q ss_conf 731-599976898887555333323688887757523258886607--899999999987521--667873899807720
Q gi|254780202|r 21 GRV-AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWIT--GEKEGRYCVLTGGEP 95 (211)
Q Consensus 21 G~p-~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~--~~~~i~~~i~~~~~~--~~~~~~~VviTGGEP 95 (211)
++| ++.|-.-=|.= .|.|||.... .. ...... =++.+...|+..... .......|-+-||-|
T Consensus 49 ~~plSLYiHiPFC~~-----------~C~YC~~~~~-~~-~~~~~~~~Yl~~L~~Ei~~~~~~l~~~~~v~~i~~GGGTP 115 (456)
T PRK09249 49 GSPLSLYVHIPFCRS-----------LCYYCGCNKI-IT-RDHEKADPYLDALEKEIALVAPLLPGGRKVSQLHWGGGTP 115 (456)
T ss_pred CCCEEEEEECCCCCC-----------CCCCCCCCCC-CC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 995599985178168-----------2899998013-57-8855799999999999999887617898367999789670
Q ss_pred CCC---CCCHHHHHHHH-----CCCEEEEECCC
Q ss_conf 000---35178999986-----89879997278
Q gi|254780202|r 96 LLQ---VDVPLIQALNK-----RGFEIAVETNG 120 (211)
Q Consensus 96 llq---~l~~L~~~l~~-----~g~~v~IETnG 120 (211)
.+= .+..|++.+++ .+.+++||.|=
T Consensus 116 s~L~~~~l~~l~~~l~~~f~~~~~~EitiE~nP 148 (456)
T PRK09249 116 TFLSPEQLTRLMALLREHFNFAPDAEISIEIDP 148 (456)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 649999999999999986688988359998434
No 75
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=88.26 E-value=0.76 Score=26.50 Aligned_cols=103 Identities=19% Similarity=0.356 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC----
Q ss_conf 013731599976-898887555333323688887757523258886607899999999987521667873899807----
Q gi|254780202|r 18 GHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG---- 92 (211)
Q Consensus 18 ~~~G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTG---- 92 (211)
...|+...||.- -|||= .|.||=++|+-. ...-.++++|++.++.+.. .+.+=|+|||
T Consensus 148 ~~~~~~~a~~~I~~GC~~-----------~CtyCivP~~RG---~~rSr~~e~Il~E~~~Lv~---~G~kEi~L~Gqnv~ 210 (455)
T TIGR00089 148 SFEGKTRAFVKIQEGCDK-----------FCTYCIVPYTRG---RERSRPPEDILEEVKELVS---KGVKEITLLGQNVN 210 (455)
T ss_pred CCCCCEEEEEEECCCCCC-----------CCCEEEECCCCC---EECCCCHHHHHHHHHHHHH---CCCEEEEEEEEEEC
T ss_conf 677753899984026586-----------977688134266---0013588999999999984---69809999988525
Q ss_pred ---CCCCC--CC-CCHHHHHHHH-C-C-CEEEEECCCCCCCCCCC-EEEEEC--CCC
Q ss_conf ---72000--03-5178999986-8-9-87999727888667885-079841--677
Q gi|254780202|r 93 ---GEPLL--QV-DVPLIQALNK-R-G-FEIAVETNGTIEPPQGI-DWICVS--PKA 137 (211)
Q Consensus 93 ---GEPll--q~-l~~L~~~l~~-~-g-~~v~IETnGt~~~~~~~-d~it~S--PK~ 137 (211)
|.=+- .+ +..|++.|.+ . | ++|-+=|.=-..+.+++ +.+.-+ ||.
T Consensus 211 ~YgG~D~~~~~~~La~LL~~l~~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v 267 (455)
T TIGR00089 211 AYGGKDLEGKTNSLADLLRELSKKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKV 267 (455)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 624778888976479999998400597026886046703268789999985078853
No 76
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=87.89 E-value=2.5 Score=23.02 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-C---CCHHHHHHHHCCCEEEEECCCC
Q ss_conf 88887757523258886607899999999987521667873899807720000-3---5178999986898799972788
Q gi|254780202|r 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-V---DVPLIQALNKRGFEIAVETNGT 121 (211)
Q Consensus 46 ~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-~---l~~L~~~l~~~g~~v~IETnGt 121 (211)
.|.||- |.....-.-.+++.+||.+.++.+.. .+.++|++..||---. . +...++.++..--.|.||..-.
T Consensus 87 ~C~YCG--f~~~N~i~R~~Ls~eEI~~E~~ai~~---~G~k~ILLvtGE~~~~~~~~Yi~~~v~~ik~~f~~v~iev~Pl 161 (371)
T PRK09240 87 DCTYCG--FSMSNKIKRKTLDEEEIEREMAAIKK---LGFEHILLVTGEHEAKVGVDYIRRALPLAREYFSSVAIEVQPL 161 (371)
T ss_pred CCEECC--CCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 887589--86778763002899999999999997---6952388540578776988999999999997567407995259
Q ss_pred C------CCCCCCEEEEE
Q ss_conf 8------66788507984
Q gi|254780202|r 122 I------EPPQGIDWICV 133 (211)
Q Consensus 122 ~------~~~~~~d~it~ 133 (211)
- -....+|.+++
T Consensus 162 ~~eeY~~L~~aG~d~~~v 179 (371)
T PRK09240 162 SEEEYAELVELGLDGVTV 179 (371)
T ss_pred CHHHHHHHHHCCCCEEEE
T ss_conf 989999999859986999
No 77
>PRK08445 hypothetical protein; Provisional
Probab=86.28 E-value=3 Score=22.51 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=46.6
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC---
Q ss_conf 59997689888755533332368888775752325888660789999999998752166787389980772000035---
Q gi|254780202|r 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--- 100 (211)
Q Consensus 24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l--- 100 (211)
+.|+. -.|+|= .+.=..+|.+|-- |........-.++.+++.+.+++... .+..-|.|.||..=-.++
T Consensus 38 vtfv~--nrniN~---TNiC~~~C~FCaF-~r~~~~~~aY~ls~eei~~~~~~a~~---~g~tEv~i~GG~~P~l~~~yY 108 (348)
T PRK08445 38 TTFIV--DRNINY---TNICWVDCKFCAF-YRHLKEEDAYILSFEEIDQKIEELLA---IGGTQILFQGGVHPKLKIEWY 108 (348)
T ss_pred EEEEE--CCCCCH---HHHHHCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCHHHH
T ss_conf 99970--168755---2686548977757-47999987622799999999999986---498189982798999977799
Q ss_pred CHHHHHHHHC
Q ss_conf 1789999868
Q gi|254780202|r 101 VPLIQALNKR 110 (211)
Q Consensus 101 ~~L~~~l~~~ 110 (211)
..+++.+++.
T Consensus 109 ~~l~r~ik~~ 118 (348)
T PRK08445 109 ENLVSHIAQK 118 (348)
T ss_pred HHHHHHHHHH
T ss_conf 9999999975
No 78
>PRK05927 hypothetical protein; Provisional
Probab=85.22 E-value=3.4 Score=22.09 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=50.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 37315999768988875553333236888877575232588866078999999999875216678738998077200003
Q gi|254780202|r 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 (211)
Q Consensus 20 ~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~ 99 (211)
.|-...|++-.-=|. .+.=...|.+|-- |..-....+-.++.+++.+.+++... .+..-|.|+||.-=-.+
T Consensus 37 ~g~~Vtyv~n~~iN~-----TNvC~~~C~FCaF-~r~~~~~~ay~ls~eei~~~~~e~~~---~G~tEv~i~GG~~P~l~ 107 (350)
T PRK05927 37 PQNTVTYVLDANPNY-----TNICKIDCTFCAF-YRKPRSSDAYLLSFDEFRSLMQRYVS---SGVKTVLLQGGVHPQLG 107 (350)
T ss_pred CCCEEEEEEECCCCC-----CHHHHCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCC
T ss_conf 998699962048774-----1256576934774-25899987532799999999999986---69838998268899998
Q ss_pred C---CHHHHHHHHC
Q ss_conf 5---1789999868
Q gi|254780202|r 100 D---VPLIQALNKR 110 (211)
Q Consensus 100 l---~~L~~~l~~~ 110 (211)
+ ..+++.+++.
T Consensus 108 ~eyy~~l~r~ik~~ 121 (350)
T PRK05927 108 IDYLEELVRITVQE 121 (350)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 69999999999974
No 79
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=82.65 E-value=4.3 Score=21.38 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHH-HHHHHHHHHHCCCCCCCEEEEEC-CCCCCCC------C
Q ss_conf 8988875553333236888877575232-588866078999-99999987521667873899807-7200003------5
Q gi|254780202|r 30 SGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTG-GEPLLQV------D 100 (211)
Q Consensus 30 ~GCnL~c~~~~~~~~~~C~~CDT~y~~~-~~~~~~~~~~~~-i~~~i~~~~~~~~~~~~~VviTG-GEPllq~------l 100 (211)
-||.- +|.||--..... .........+.+ +.+.+++...-..+....|.++. =+|. |+ +
T Consensus 37 ~GC~h-----------~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpy-qp~E~~~~l 104 (297)
T COG1533 37 RGCSH-----------GCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPY-QPIEKEYRL 104 (297)
T ss_pred CCCCC-----------CCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCHHHHHHH
T ss_conf 78778-----------884133620146656786055401569999998875246785599985468888-564778789
Q ss_pred -CHHHHHHHHCCCEEEEECCCCC
Q ss_conf -1789999868987999727888
Q gi|254780202|r 101 -VPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 101 -~~L~~~l~~~g~~v~IETnGt~ 122 (211)
..++..+.+.|+++.|-|=.++
T Consensus 105 tR~ilei~~~~~~~v~I~TKS~l 127 (297)
T COG1533 105 TRKILEILLKYGFPVSIVTKSAL 127 (297)
T ss_pred HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999998853996799977741
No 80
>PRK06267 hypothetical protein; Provisional
Probab=80.03 E-value=5.3 Score=20.78 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-CCCHHHHHHHHC-CCEEEEECCC
Q ss_conf 888877575232---58886607899999999987521667873899807720000-351789999868-9879997278
Q gi|254780202|r 46 QCRFCDTDFVGI---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKR-GFEIAVETNG 120 (211)
Q Consensus 46 ~C~~CDT~y~~~---~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-~l~~L~~~l~~~-g~~v~IETnG 120 (211)
.|.||--. +.. ......+++.++|++.++.... .+.+.++++|||=.-- .+..++..++.. +..+.+ +-|
T Consensus 42 dC~YCg~s-a~~~k~k~p~ryR~s~EeIl~~A~~~~~---~G~kt~vLqsGedyt~eel~~ii~~IK~i~~~avtL-SlG 116 (324)
T PRK06267 42 PCKFCFMS-TQKDKIKDPLKARRRPESILAEAIIMKR---IGWKLEFISGGYGYTTEEINDIIEMISYIQGSKQYL-NVG 116 (324)
T ss_pred CCCCCCCC-CCCCCCCCHHHHHCCHHHHHHHHHHHHH---HCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-ECC
T ss_conf 98768777-7777776466552899999999999998---399979980487799899999999998601871697-158
Q ss_pred C
Q ss_conf 8
Q gi|254780202|r 121 T 121 (211)
Q Consensus 121 t 121 (211)
.
T Consensus 117 ~ 117 (324)
T PRK06267 117 I 117 (324)
T ss_pred C
T ss_conf 7
No 81
>PRK08444 hypothetical protein; Provisional
Probab=77.51 E-value=6.3 Score=20.28 Aligned_cols=92 Identities=9% Similarity=0.137 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCC
Q ss_conf 373159997689888755533332368888775752325888660789999999998752166787389980772-0000
Q gi|254780202|r 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE-PLLQ 98 (211)
Q Consensus 20 ~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGE-Pllq 98 (211)
.|-...|+. -.|+|-.+.+ ..+|.||-- |........-.++.+++.+.+.+.... +..-|.+.||. |-+-
T Consensus 41 ~G~~vtfv~--n~~IN~TNiC---~~~C~FCaF-~r~~~~~~aY~ls~eei~~~~~ea~~~---G~tev~i~GG~~P~~~ 111 (353)
T PRK08444 41 HGKKVYFNI--NRHINPTNIC---ADVCKFCAF-SAHRKNPNPYTMSHEEILEIVKESVKR---GIKEVHIVSAHNPNYG 111 (353)
T ss_pred CCCEEEEEE--CCCCCCCCCC---CCCCCCCCC-CCCCCCCCCEECCHHHHHHHHHHHHHC---CCCEEEEECCCCCCCC
T ss_conf 799169982--0574566445---688856756-168999987666999999999999975---9878998147598997
Q ss_pred --CCCHHHHHHHHCCCEEEEECCC
Q ss_conf --3517899998689879997278
Q gi|254780202|r 99 --VDVPLIQALNKRGFEIAVETNG 120 (211)
Q Consensus 99 --~l~~L~~~l~~~g~~v~IETnG 120 (211)
--.++++.+++.-=.++|..-.
T Consensus 112 ~eyY~~l~r~ik~~~P~i~i~aft 135 (353)
T PRK08444 112 YQWYLEIFKMIKEAYPNLHVKAMT 135 (353)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 588999999999858850477177
No 82
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=74.45 E-value=5.8 Score=20.54 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=55.1
Q ss_pred CEEEE--EECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 12447--7510558401373159997689888755533332368888775752325888660789999999998752166
Q gi|254780202|r 5 SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 (211)
Q Consensus 5 ~i~Ei--F~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 82 (211)
++.|- |.+.--||.+.|.=.+- .|||= -|.||=.+|+-.+ .--...+.|+..|..+..
T Consensus 139 ~~~~~rfla~~r~Eg~~~sfv~Im---~GCdk-----------fCtYCiVPYtRG~---E~Sr~~~~Il~Ev~~l~~--- 198 (456)
T TIGR01574 139 EVIDRRFLAEVRNEGKFKSFVNIM---EGCDK-----------FCTYCIVPYTRGE---EISRPLDDILQEVQKLAE--- 198 (456)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECC---CCCCC-----------CCCEEECCCCCCC---CCCCCHHHHHHHHHHHHH---
T ss_conf 000651177512476422524031---47688-----------5454661530482---012574469999999986---
Q ss_pred CCCCEEEEEC-------CCCC--CCC---CCHHHHHHH
Q ss_conf 7873899807-------7200--003---517899998
Q gi|254780202|r 83 KEGRYCVLTG-------GEPL--LQV---DVPLIQALN 108 (211)
Q Consensus 83 ~~~~~VviTG-------GEPl--lq~---l~~L~~~l~ 108 (211)
.+.+=|.|=| |+-. -.. +..|++.|.
T Consensus 199 ~G~kEi~LLGQNVN~YRG~~frne~~~~~f~dLL~~l~ 236 (456)
T TIGR01574 199 KGVKEITLLGQNVNAYRGKDFRNEGKTVDFADLLRELA 236 (456)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEECHHHHHHHHH
T ss_conf 58648740365301115875225886736699999998
No 83
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=74.32 E-value=6.1 Score=20.38 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC--C----CCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 88887757523258886607899999999987521667873899807720--0----0035178999986898799972
Q gi|254780202|r 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--L----LQVDVPLIQALNKRGFEIAVET 118 (211)
Q Consensus 46 ~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEP--l----lq~l~~L~~~l~~~g~~v~IET 118 (211)
+|++||.+.. .....+.+|-....+.... .+-++||||+=.= | .|....-++++++.+=.+.||.
T Consensus 83 ~C~FC~V~~g-----~P~~lD~~EP~rvAeaV~~---mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir~~~P~t~iEv 153 (306)
T COG0320 83 RCRFCDVKTG-----RPNPLDPDEPERVAEAVKD---MGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEV 153 (306)
T ss_pred CCCCCCCCCC-----CCCCCCCCHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7885314789-----9999997427899999998---389869997531566656456899999999996399964898
No 84
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=72.63 E-value=8.3 Score=19.46 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC---CCC---CC--C-----C-CHHHHHHHHCCCEEEEECC-CCCCC
Q ss_conf 8866078999999999875216678738998077---200---00--3-----5-1789999868987999727-88866
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG---EPL---LQ--V-----D-VPLIQALNKRGFEIAVETN-GTIEP 124 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG---EPl---lq--~-----l-~~L~~~l~~~g~~v~IETn-Gt~~~ 124 (211)
..++...+++|++.+.+.........+.|+||+| ||. .+ + + ..|.+++..+|.+|.+=+. .+.++
T Consensus 161 G~Grl~ep~~I~~~i~~~l~~~~l~gkkvLITaG~T~E~IDpVR~IsN~SSGkmG~aiA~~a~~~GA~VtlI~g~~~~~~ 240 (392)
T PRK05579 161 GKGRMAEPEEIVAAAERLLGPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPT 240 (392)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 35689999999999998506777678879997477247767624766578658999999999967997999964787789
Q ss_pred CCCCEEE
Q ss_conf 7885079
Q gi|254780202|r 125 PQGIDWI 131 (211)
Q Consensus 125 ~~~~d~i 131 (211)
+..+..+
T Consensus 241 p~~v~~i 247 (392)
T PRK05579 241 PAGVKRI 247 (392)
T ss_pred CCCCEEE
T ss_conf 9996799
No 85
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=72.57 E-value=4.4 Score=21.35 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--C-----CCH
Q ss_conf 898887555333323688887757523258886607899999999987521667873899807720000--3-----517
Q gi|254780202|r 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V-----DVP 102 (211)
Q Consensus 30 ~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq--~-----l~~ 102 (211)
+||+- .|+||=|+.|-.+- .-++++++++.+.++... +++=|-||+=.=-.| + |-+
T Consensus 152 ~GC~~-----------~CsYCi~K~ARG~L---~S~PpEkiV~~ar~l~~~---G~kEI~iTs~DT~~YG~DiG~~kLPe 214 (487)
T TIGR01578 152 QGCLG-----------NCSYCITKIARGKL---ASYPPEKIVEKARELVAE---GAKEIWITSQDTAAYGKDIGERKLPE 214 (487)
T ss_pred CCCCC-----------CCCEEEEEEEECCC---CCCCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 66356-----------88754677764452---488722568999999970---53126513446663442237621279
Q ss_pred HHH-HHHHC--CCEEEE---ECCCCCCCCCC
Q ss_conf 899-99868--987999---72788866788
Q gi|254780202|r 103 LIQ-ALNKR--GFEIAV---ETNGTIEPPQG 127 (211)
Q Consensus 103 L~~-~l~~~--g~~v~I---ETnGt~~~~~~ 127 (211)
|+. .+-.. .|++-+ +-.++.++.++
T Consensus 215 LL~~~~t~I~g~F~~RVGMmnP~~~~~Ilde 245 (487)
T TIGR01578 215 LLRRLITEIPGDFRLRVGMMNPKNVLEILDE 245 (487)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 9999986259932787625887633478899
No 86
>pfam10276 zf-CHCC Zinc-finger domain. This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.
Probab=69.40 E-value=5.5 Score=20.66 Aligned_cols=33 Identities=27% Similarity=0.648 Sum_probs=22.2
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 558401373159997689888755533332368888775752
Q gi|254780202|r 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV 55 (211)
Q Consensus 14 QGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~ 55 (211)
.|-|.-.|-|-|||-+..=+ ....|+|||+.|.
T Consensus 8 dGg~g~lGHP~V~l~l~~~~---------~~~~C~YC~~~fv 40 (40)
T pfam10276 8 DGGGGPLGHPRVYINLDDET---------GPVECPYCGLRFV 40 (40)
T ss_pred CCCCCCCCCCEEEEECCCCC---------CEEECCCCCCCCC
T ss_conf 69999899999988868999---------9788998786919
No 87
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=69.22 E-value=9.9 Score=18.96 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf 6078999999999875216678738998077200003-51789999868987999
Q gi|254780202|r 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211)
..++.+++.+.+.++.. .+.+.+.+.||.|.++. ..++++.|.+.|+.+.+
T Consensus 62 ~~~~q~~i~~~~~~~a~---~G~~VvrL~~GDP~ifg~~~eei~~l~~~gi~~ev 113 (253)
T PRK06136 62 HSTKQEEINRLLVDYAR---KGKVVVRLKGGDPFVFGRGGEELEALEAAGIPVEV 113 (253)
T ss_pred CCCCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 88579999999999973---79979999589987664059999999978996799
No 88
>PRK10474 putative fructose-like phosphotransferase EIIB subunit 2; Provisional
Probab=68.17 E-value=5.4 Score=20.73 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 789999868987999727888667
Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGTIEPP 125 (211)
Q Consensus 102 ~L~~~l~~~g~~v~IETnGt~~~~ 125 (211)
.|-+.-++.|+.+.+||+|+.-+.
T Consensus 5 ~Le~aA~~~G~~ikVETqGs~G~e 28 (88)
T PRK10474 5 ALESAAKAKGWEVKVETQGSIGLE 28 (88)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 999999986996999838987877
No 89
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=67.66 E-value=9.9 Score=18.96 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=30.4
Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 3899807720000-3517899998689879997278886
Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
..|.||||+.|.. ++.+|++.|++.|..+..+.....+
T Consensus 98 ~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~ 136 (408)
T cd01554 98 FEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLP 136 (408)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCE
T ss_conf 569974884116798499999999779889960896423
No 90
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=65.64 E-value=12 Score=18.49 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf 8999999999875216678738998077200003-51789999868987999
Q gi|254780202|r 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211)
..+++.+.+.+.... +...+.+|+|.|.++. ...+++.|.+.|+.+.+
T Consensus 75 ~~~~~~~~i~~~~~~---G~~Va~l~~GDP~iyst~~~~~~~l~~~gi~vev 123 (224)
T PRK05576 75 VWKENAEEIAAEAEE---GKNVAFITLGDPNVYSTFSHLLKYLKAPHIEVET 123 (224)
T ss_pred HHHHHHHHHHHHHHC---CCEEEEEECCCCCHHCHHHHHHHHHHHCCCCEEE
T ss_conf 899999999999977---9949999368962112099999999858998899
No 91
>PRK09234 fbiC FO synthase; Reviewed
Probab=65.02 E-value=11 Score=18.62 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=43.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC--C
Q ss_conf 37315999768988875553333236888877575232588-86607899999999987521667873899807720--0
Q gi|254780202|r 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--L 96 (211)
Q Consensus 20 ~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~-~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEP--l 96 (211)
+=.|-|||=|. +| |.. +|+||- |+..... ....++++|+.+++.+-. ..+++-..+|=||= +
T Consensus 72 TyS~kVFiPLT--~l-Crd-------~C~YCt--F~~~p~~~~~~~l~~deV~~ia~~g~---~~GC~EALftlGd~PE~ 136 (846)
T PRK09234 72 TYSRKVFIPLT--RL-CRD-------RCHYCT--FATVPGKLRAAYLSPDEVLDIARAGA---AAGCKEALFTLGDRPED 136 (846)
T ss_pred EECCCCCCCCC--HH-HHC-------CCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCCEEHHCCCCCHHH
T ss_conf 65786431430--68-763-------688776--43688655677789999999999999---86995613146888677
Q ss_pred CCCCCHHHHHHHHCCCEE
Q ss_conf 003517899998689879
Q gi|254780202|r 97 LQVDVPLIQALNKRGFEI 114 (211)
Q Consensus 97 lq~l~~L~~~l~~~g~~v 114 (211)
.|+ ..-+.|.+.||.-
T Consensus 137 r~~--~a~~~L~~~G~~s 152 (846)
T PRK09234 137 RWP--EAREWLDERGYDS 152 (846)
T ss_pred HHH--HHHHHHHHCCCCC
T ss_conf 489--9999999719845
No 92
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=64.46 E-value=12 Score=18.35 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 68988875553333236888877575232588866078999999999875
Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 (211)
Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~ 78 (211)
.-||+. +|.+|.....+ ....++.+.+.+.+..+.
T Consensus 205 ~RGCp~-----------~C~FC~~~~~~----~~r~~~~~~v~~ei~~~~ 239 (490)
T COG1032 205 SRGCPR-----------GCRFCSITKHF----KYRRRRPERVVEEIKELI 239 (490)
T ss_pred ECCCCC-----------CCCCCCCCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 788888-----------99888886114----600578899999999999
No 93
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=63.92 E-value=12 Score=18.28 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=52.9
Q ss_pred ECCCCCCCCCCCCE-------------EEEEC--CCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCC-CCCCCCHHHHH
Q ss_conf 51055840137315-------------99976--89888755533332368888---77575232588-86607899999
Q gi|254780202|r 11 LTLQGEGGHAGRVA-------------VFCRF--SGCNLWSGREQDRLSAQCRF---CDTDFVGIQGT-KGGRYNVDQLA 71 (211)
Q Consensus 11 ~SiQGEG~~~G~p~-------------vFiRl--~GCnL~c~~~~~~~~~~C~~---CDT~y~~~~~~-~~~~~~~~~i~ 71 (211)
-|++|=|.|+|+++ +|+|. .|.+. +...| +||..+..-+. ...-.|++-++
T Consensus 12 vs~~GiGLHsG~~v~ltl~PA~~~tGIvF~R~Dl~~~~~----------I~A~~~~V~~t~l~TtL~~~g~~V~TVEHLm 81 (465)
T PRK13188 12 VSLSGKGLHTGKEVTITFKPAPVNHGYKFKRTDLEGQPE----------IPALVDNVVDVLRGTTIGKNGVKVHTVEHVL 81 (465)
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCCCCCE----------EEECHHHCCCCCCCCEECCCCEEEEEHHHHH
T ss_conf 799999806895788999948999868999845899967----------8853654246755238757997997489999
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHCCCE
Q ss_conf 9999875216678738998077200003--51789999868987
Q gi|254780202|r 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFE 113 (211)
Q Consensus 72 ~~i~~~~~~~~~~~~~VviTGGEPllq~--l~~L~~~l~~~g~~ 113 (211)
..+..+.. ..=.|.+.|.|+=+=+ -.++++.+.+.|..
T Consensus 82 AAL~glgI----DN~~IEidg~EvPIlDGSA~~Fv~~I~~aGi~ 121 (465)
T PRK13188 82 AALYGLGI----DNCLIELNGPEPPIMDGSSMPFVEAIERAGIV 121 (465)
T ss_pred HHHHHCCC----CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCE
T ss_conf 99985897----15999979983885378789999999972862
No 94
>PRK05926 hypothetical protein; Provisional
Probab=62.80 E-value=13 Score=18.15 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 37315999768988875553333236888877575232588866078999999999875216678738998077200003
Q gi|254780202|r 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 (211)
Q Consensus 20 ~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~ 99 (211)
.|-...|+.- .|+|-. +.=...|.+|-- |.......+-.++.+++.+.+++.. .+..-|.|-||-.=-.+
T Consensus 61 ~Gd~Vtfv~n--r~INyT---NvC~~~C~FCaF-~r~~~~~~aY~ls~eei~~~v~e~~----~g~tEv~i~GG~hP~l~ 130 (371)
T PRK05926 61 VGDTVYYSST--LYLYPT---NFCDFNCTFCSF-YAKPGDPKGWFYTPDQLIQSIQEIK----SPITETHIVAGCFPSCN 130 (371)
T ss_pred CCCEEEEEEE--CCCCCC---HHHHCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHH----CCCCEEEEECCCCCCCC
T ss_conf 6997899624--586521---134267924776-3689997652389999999999987----59968997178898998
Q ss_pred C---CHHHHHHHHCCCEEEE
Q ss_conf 5---1789999868987999
Q gi|254780202|r 100 D---VPLIQALNKRGFEIAV 116 (211)
Q Consensus 100 l---~~L~~~l~~~g~~v~I 116 (211)
+ .++++.+++.-=.++|
T Consensus 131 ~~yY~~l~~~ik~~~P~v~i 150 (371)
T PRK05926 131 LAYYEELFSKIKENFPDIHI 150 (371)
T ss_pred HHHHHHHHHHHHHHCCCCCC
T ss_conf 69999999999975898741
No 95
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.82 E-value=6.8 Score=20.04 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 105584013731599976898887555333323688887757523
Q gi|254780202|r 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 (211)
Q Consensus 12 SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~ 56 (211)
+=+|-+.=-|-|-||+-++-=+ ..-|+||+|.|..
T Consensus 26 ~C~g~~~p~~HPrV~L~mg~~g----------ev~CPYC~t~y~l 60 (62)
T COG4391 26 MCPGPEPPNDHPRVFLDMGDEG----------EVVCPYCSTRYRL 60 (62)
T ss_pred ECCCCCCCCCCCEEEEECCCCC----------CEECCCCCCEEEE
T ss_conf 7579889899988988727787----------4826766627874
No 96
>pfam04239 DUF421 Protein of unknown function (DUF421). YDFR family
Probab=61.57 E-value=11 Score=18.75 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCCCCC-----C--CHHHHHHHHCCC-------EEEEECCCCCCCCC
Q ss_conf 8738998077200003-----5--178999986898-------79997278886678
Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-----D--VPLIQALNKRGF-------EIAVETNGTIEPPQ 126 (211)
Q Consensus 84 ~~~~VviTGGEPllq~-----l--~~L~~~l~~~g~-------~v~IETnGt~~~~~ 126 (211)
+.+.++|-.|+.+... + ..|...|+..|+ ...+||||++.+..
T Consensus 6 g~p~~li~~G~i~~~~l~k~~it~~dl~~~LR~~gi~~~~~V~~aiLE~nG~iSVi~ 62 (98)
T pfam04239 6 GKPTLLIENGKILEENLKKERLTEDDLLSALREKGIFDLSDVEAAILETNGQLSVIP 62 (98)
T ss_pred CCCEEEEECCEECHHHHHHCCCCHHHHHHHHHHCCCCCHHHHCEEEEECCCCEEEEE
T ss_conf 974799999999699998849999999999998399998890278990898689998
No 97
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=60.35 E-value=9.7 Score=19.01 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 78999999999875216678738998077
Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGG 93 (211)
Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG 93 (211)
++++|+++.+.+ .....+|||||=
T Consensus 132 L~veeV~~~L~~-----kp~~~~vvlTGR 155 (191)
T TIGR00708 132 LDVEEVVEVLQE-----KPKSQHVVLTGR 155 (191)
T ss_pred CCHHHHHHHHHC-----CCCCCEEEEECC
T ss_conf 788999999855-----845677888668
No 98
>PRK10427 putative fructose-like phosphotransferase EIIB subunit 3; Provisional
Probab=60.13 E-value=12 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=20.3
Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 1789999868987999727888667
Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIEPP 125 (211)
Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~~~ 125 (211)
..|-+.-++.|+++.+||+|+.-+.
T Consensus 23 eaLe~aak~~G~~ikVETQGs~G~e 47 (114)
T PRK10427 23 ERLEKLCQLEKWGVKIETQGALGTE 47 (114)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 9999999986996899748977888
No 99
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=58.72 E-value=10 Score=18.91 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=19.1
Q ss_pred CHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 178999986898799972788866
Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIEP 124 (211)
Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~~ 124 (211)
..|-..-++.|+.|.+||+|+.=+
T Consensus 22 eaLe~~A~~~g~~IKVETqGs~G~ 45 (122)
T COG1445 22 EALEKAAKKLGVEIKVETQGAVGI 45 (122)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 999999998498699970786565
No 100
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=58.41 E-value=10 Score=18.91 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=28.5
Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 3899807720000-3517899998689879997278886
Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
..+.+|||+.|-. ++.++++.|++.|-++.. +||..+
T Consensus 98 ~~~~~~G~~sL~~RPm~~li~~L~~lGa~i~~-~~~~~~ 135 (400)
T cd01555 98 ARVSLPGGCAIGARPVDLHLKGLEALGAKIEI-EDGYVE 135 (400)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHCCCCEEE-CCCCEE
T ss_conf 36973388532789708999999974661030-479788
No 101
>PRK08173 DNA topoisomerase III; Validated
Probab=57.79 E-value=11 Score=18.52 Aligned_cols=42 Identities=19% Similarity=0.494 Sum_probs=25.9
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8887555--33332368888775752325888660789999999998
Q gi|254780202|r 32 CNLWSGR--EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 (211)
Q Consensus 32 CnL~c~~--~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~ 76 (211)
||. |+. ..+...++|..|| |+-|....+..++..++.+.+..
T Consensus 627 CP~-Cg~~i~~~~k~y~C~~C~--f~i~k~i~gk~l~~~~~~~Ll~~ 670 (857)
T PRK08173 627 CPN-CGGVVKENYRRFACTKCD--FSISKIPGGRQFEIAEVEELLRK 670 (857)
T ss_pred CCC-CCCEEEECCCEEECCCCC--EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 888-895167556189779997--78763207836899999999977
No 102
>pfam05706 CDKN3 Cyclin-dependent kinase inhibitor 3 (CDKN3). This family consists of cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner.
Probab=57.52 E-value=16 Score=17.55 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEE
Q ss_conf 899999999987521667873899807720000351789999868987999
Q gi|254780202|r 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 (211)
Q Consensus 66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~I 116 (211)
+++.-++.+.+... ..=.|.+|-||=-.|....|++.-...|+.|+=
T Consensus 59 nLq~Dleelk~~gi----qdVfvlctRgEL~~yrVP~LLd~yq~~G~~vhH 105 (207)
T pfam05706 59 NIQKDTEELKSCGI----QDIFVFCTRGELSKYRVPNLLDLYQQCGIITHH 105 (207)
T ss_pred HHHHHHHHHHHCCC----CEEEEEEECCHHHHHCCCCHHHHHHHCCCEEEE
T ss_conf 59998999997799----669999623436662753099999976916885
No 103
>pfam02379 consensus
Probab=57.48 E-value=14 Score=17.85 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 17899998689879997278886678
Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIEPPQ 126 (211)
Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~~~~ 126 (211)
..|-+.-+++|+.+.+||+|+.-+..
T Consensus 20 eaLe~aa~~~G~~ikVEtqG~~G~en 45 (103)
T pfam02379 20 EALEKAAKKLGWEVKVETQGSSGIEN 45 (103)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 99999999879959999579878778
No 104
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=57.29 E-value=16 Score=17.52 Aligned_cols=65 Identities=15% Similarity=0.293 Sum_probs=39.0
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
Q ss_conf 59997689888755533332368888775752325-888660789999999998752166787389980772000035
Q gi|254780202|r 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 (211)
Q Consensus 24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l 100 (211)
.+|-=|.==|. |.+ .|.||- |.... .-.-..++.+|+...+..+...+ ..+.+.+||=-|-.-+.
T Consensus 83 vLFAPLYlSN~-C~N-------~C~YCG--F~~~Nk~i~Rk~Lt~eEi~~E~~al~~~G--~krilLvtGE~p~~~~~ 148 (471)
T PRK09613 83 VLFAPLYISNY-CVN-------NCVYCG--FRRSNKELKRKKLTQEEIREEVKALESMG--HKRLALVAGEHPVNCDI 148 (471)
T ss_pred EEEECHHHHCC-CCC-------CCEECC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCH
T ss_conf 99854112033-367-------875378--74778777633789999999999999769--73189871468887988
No 105
>PRK08508 biotin synthase; Provisional
Probab=56.30 E-value=17 Score=17.41 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=37.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE-EEECCCCCCCCC---C
Q ss_conf 976898887555333323688887757-52325888660789999999998752166787389-980772000035---1
Q gi|254780202|r 27 CRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC-VLTGGEPLLQVD---V 101 (211)
Q Consensus 27 iRl~GCnL~c~~~~~~~~~~C~~CDT~-y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~V-viTGGEPllq~l---~ 101 (211)
++-.+|.= .|.||--. +...+-......+.++|++........+.. ++. |.+|..|--..+ .
T Consensus 12 ~KSG~C~e-----------dC~yCaQs~~~~t~i~~Y~l~~~eeIl~~A~~a~~~G~~--rf~lv~sg~~~~~~~~e~v~ 78 (279)
T PRK08508 12 ISSGNCKE-----------DCKYCTQSAHYKADIKRYKRKEIEQIVQEAKMARANGAL--GFCLVTAGRGLDDKKLEYVA 78 (279)
T ss_pred CCCCCCCC-----------CCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCC--EEEEEEECCCCCHHHHHHHH
T ss_conf 41379998-----------786444817679998610789999999999999975997--68999823688754499999
Q ss_pred HHHHHHHHC
Q ss_conf 789999868
Q gi|254780202|r 102 PLIQALNKR 110 (211)
Q Consensus 102 ~L~~~l~~~ 110 (211)
..++.+++.
T Consensus 79 ~~v~~Ik~~ 87 (279)
T PRK08508 79 KAAKAVKKE 87 (279)
T ss_pred HHHHHHHHC
T ss_conf 999998633
No 106
>PRK12928 lipoyl synthase; Provisional
Probab=55.94 E-value=17 Score=17.38 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=40.7
Q ss_pred CCCCCCCCCEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHCCCCCCCEEEE
Q ss_conf 5840137315999768-988875553333236888877575232588866078999---999999875216678738998
Q gi|254780202|r 15 GEGGHAGRVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ---LADLIEEQWITGEKEGRYCVL 90 (211)
Q Consensus 15 GEG~~~G~p~vFiRl~-GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~---i~~~i~~~~~~~~~~~~~Vvi 90 (211)
||=...|+.++-| ++ -|-= +|.+|+.+.- .....+.+| +++.|.++ .-+||||
T Consensus 53 ~ECw~~gTATFMI-lGd~CTR-----------~C~FC~V~tg-----~P~~lD~~EP~rvA~av~~m------~LkyvVI 109 (290)
T PRK12928 53 GECYAQGTATFLL-MGSICTR-----------RCAFCQVAKG-----RPMPLDPDEPERVAEAVAAL------GLRYVVL 109 (290)
T ss_pred HHHCCCCCCEEEE-CCCCCCC-----------CCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHH------CCCEEEE
T ss_conf 8866998428996-6786354-----------8985155379-----98989803479999999983------8976898
Q ss_pred ECCCCC-C-----CCCCHHHHHHHHCCCEEEEEC
Q ss_conf 077200-0-----035178999986898799972
Q gi|254780202|r 91 TGGEPL-L-----QVDVPLIQALNKRGFEIAVET 118 (211)
Q Consensus 91 TGGEPl-l-----q~l~~L~~~l~~~g~~v~IET 118 (211)
|-=.== | .....-++++++..=.+.||.
T Consensus 110 TSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEv 143 (290)
T PRK12928 110 TSVARDDLPDGGAAHFVATIAAIRARNPGTGIEV 143 (290)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4123678866452999999999984599867997
No 107
>PRK11404 putative PTS transporter components IIBC; Provisional
Probab=55.68 E-value=16 Score=17.48 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=19.8
Q ss_pred CHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 17899998689879997278886
Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
+.|-+.-++.|+++.+||||+.=
T Consensus 24 eaL~~aak~~G~~ikVETqGs~G 46 (482)
T PRK11404 24 EALEQKARSLGHTIKVETQGSSG 46 (482)
T ss_pred HHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99999999869968996389777
No 108
>PRK05481 lipoyl synthase; Provisional
Probab=54.01 E-value=18 Score=17.17 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-C-----CCCCHHHHHHHHCCCEEEEEC
Q ss_conf 888877575232588866078999999999875216678738998077200-0-----035178999986898799972
Q gi|254780202|r 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-L-----QVDVPLIQALNKRGFEIAVET 118 (211)
Q Consensus 46 ~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPl-l-----q~l~~L~~~l~~~g~~v~IET 118 (211)
+|.||+.+.- .....+.+|.....+.... ..-+|||||.=.== | .....-++++++..-.+.||.
T Consensus 65 ~C~FC~V~tG-----~P~~~D~~EP~~vA~av~~---m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEv 135 (289)
T PRK05481 65 RCPFCDVATG-----RPLPLDPDEPERVAEAVAR---MGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELSPGTTIEV 135 (289)
T ss_pred CCCCCCCCCC-----CCCCCCCHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8877407889-----9898870307999999998---289769996341666656554999999999985599977997
No 109
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=53.87 E-value=18 Score=17.16 Aligned_cols=39 Identities=36% Similarity=0.389 Sum_probs=29.1
Q ss_pred CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 73899807720000-3517899998689879997278886
Q gi|254780202|r 85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
...++++||+-+-. ++.++++.|++.|.++....++..+
T Consensus 96 ~~~~~l~G~~~l~~RPi~~~i~~L~~lGa~i~~~~~~~~~ 135 (409)
T cd01556 96 GGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYP 135 (409)
T ss_pred CCEEEEECCHHHCCCCCHHHHHHHHHCCCEEEECCCCCCE
T ss_conf 8369983773425898468999999889999962797533
No 110
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=53.46 E-value=18 Score=17.11 Aligned_cols=37 Identities=30% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCC
Q ss_conf 73899807720000-35178999986898799972788
Q gi|254780202|r 85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121 (211)
Q Consensus 85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt 121 (211)
...++++||+-|-. ++.++++.|++.|.++..+.++.
T Consensus 109 ~~~~~l~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~ 146 (424)
T PRK02427 109 PGEVVLTGDESLRKRPMGRLVDPLRQMGAKIEGREEGY 146 (424)
T ss_pred CCEEEEECCHHHCCCCCHHHHHHHHHCCCEEEECCCCE
T ss_conf 95699978701057871068999997799999657843
No 111
>PRK10712 fructose-specific PTS system IIBC component; Provisional
Probab=52.77 E-value=14 Score=17.89 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=26.2
Q ss_pred CCEEEEECCCCC-C-CC---CCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 738998077200-0-03---517899998689879997278886
Q gi|254780202|r 85 GRYCVLTGGEPL-L-QV---DVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 85 ~~~VviTGGEPl-l-q~---l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
.|.|-+|.= |. + |- -+.|-+.-++.|+++.+||||+.=
T Consensus 104 kkIVAVTAC-PTGIAHTYMAAEaL~~aak~~Gv~ikVETqGs~G 146 (563)
T PRK10712 104 KRVVAVTAC-PTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVG 146 (563)
T ss_pred CEEEEEECC-CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 539998158-6259899999999999999869969996388777
No 112
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=51.29 E-value=20 Score=16.89 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 789999868987999727888667
Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGTIEPP 125 (211)
Q Consensus 102 ~L~~~l~~~g~~v~IETnGt~~~~ 125 (211)
.|-+.-++.|+.+.+||+|+.-+.
T Consensus 20 aL~~aA~~~G~~ikVEtqg~~g~~ 43 (96)
T cd05569 20 ALEKAAKKLGWEIKVETQGSLGIE 43 (96)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 999999987995999947987877
No 113
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=51.16 E-value=18 Score=17.26 Aligned_cols=89 Identities=21% Similarity=0.276 Sum_probs=48.2
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 58401373159997689888755533332368888775752325888660789999999998752166787389980772
Q gi|254780202|r 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 (211)
Q Consensus 15 GEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGE 94 (211)
|....-|+.++.+-=.-|. -+|++||..+.... ..........+.+.+... ..++|++|--.
T Consensus 62 g~d~~~~~~~~~~lg~~c~-----------~~c~fc~~~~~~~p-~~pdp~ep~~~~~~~~~~------~l~~~~~~~~~ 123 (310)
T TIGR00510 62 GKDKSHGTATFLLLGDICT-----------RRCPFCDVAHGRNP-LPPDPEEPEKLAETIKDL------GLKYVVITSVD 123 (310)
T ss_pred CCCCCCCHHHHHHHHHHHH-----------CCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHH------CCCEEEEEECC
T ss_conf 6432210124432313652-----------24763102246778-988733225689999873------05535775122
Q ss_pred C--CCC----CCCHHHHHHHHCCCEEEEECCCC
Q ss_conf 0--000----35178999986898799972788
Q gi|254780202|r 95 P--LLQ----VDVPLIQALNKRGFEIAVETNGT 121 (211)
Q Consensus 95 P--llq----~l~~L~~~l~~~g~~v~IETnGt 121 (211)
- |.. .+...+..++...-.+.|||-..
T Consensus 124 ~ddl~dgg~~~~~~~~~~~~~~~p~~~~e~l~~ 156 (310)
T TIGR00510 124 RDDLEDGGAGHLAECVEALREKLPNIKIETLVP 156 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 000234534678999999875245413210013
No 114
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms . The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=50.91 E-value=20 Score=16.85 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf 88660789999999998752166787389980--77200003517899998689879
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFEI 114 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~v 114 (211)
+-++.|+.|++++.|+.+.+.. .+.|...|. |-+=..-.|-+|+++.++.|..|
T Consensus 291 KvGP~m~pd~ll~lie~LdP~~-~PGRLtli~RmGa~~~adkLP~L~~aV~~~G~~V 346 (450)
T TIGR01358 291 KVGPSMTPDELLRLIERLDPEN-EPGRLTLISRMGADKIADKLPPLLEAVKAAGRAV 346 (450)
T ss_pred EECCCCCHHHHHHHHHHCCCCC-CCCCEEEEEECCCCHHHHHCHHHHHHHHHCCCCE
T ss_conf 5388666889998865407799-8963688883375012340537899999727925
No 115
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=50.47 E-value=21 Score=16.80 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEEC
Q ss_conf 8738998077200003-5178999986898799972
Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVET 118 (211)
Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IET 118 (211)
+...+.+|.|.|.+|. ...|.+.|++..-.+.+|+
T Consensus 92 G~~Va~l~~GDp~~Yst~~yl~~~l~~~~~~i~vev 127 (238)
T PRK05948 92 GEDVAFACEGDVSLYSTFTYLAQTLRELHPQVAIQT 127 (238)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 993999944683066648999999984199943997
No 116
>PRK09765 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC; Provisional
Probab=49.11 E-value=17 Score=17.37 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHCCCC-----CCCEEEEECCCCC-C-C--C-CCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 7899999999987521667-----8738998077200-0-0--3-5178999986898799972788866
Q gi|254780202|r 65 YNVDQLADLIEEQWITGEK-----EGRYCVLTGGEPL-L-Q--V-DVPLIQALNKRGFEIAVETNGTIEP 124 (211)
Q Consensus 65 ~~~~~i~~~i~~~~~~~~~-----~~~~VviTGGEPl-l-q--~-l~~L~~~l~~~g~~v~IETnGt~~~ 124 (211)
-+.+|+.+.+++....... ....|-+|. =|. + | - -+.|-++-++.|+++.+||||+.=+
T Consensus 139 ~s~eEi~~li~~~~~~~~~~~~~~~~~IvavTa-CPtGIAHTYMAaeaL~~aak~~g~~ikVETqGs~G~ 207 (638)
T PRK09765 139 TTPDELLSALDDKGGTQPSASFSNAPTIVCVTA-CPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGI 207 (638)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 999999999853634333455567862677403-773167899999999999998398589974687677
No 117
>pfam00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).
Probab=48.99 E-value=22 Score=16.65 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=28.3
Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCC
Q ss_conf 3899807720000-3517899998689879997278
Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120 (211)
Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnG 120 (211)
..++++||+-|.. ++.++++.|++.|.++..+-++
T Consensus 107 ~~~~l~G~~~L~~RP~~~l~~~L~~lGa~i~~~~~~ 142 (415)
T pfam00275 107 GEVVLTGDDSIGERPIDRLLDGLRQLGAEIEYREGY 142 (415)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 559841873346897279999999879889994253
No 118
>TIGR00829 FRU PTS system, Fru family, IIB component; InterPro: IPR003353 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). IIB (2.7.1.69 from EC) is is phosphorylated by phospho-IIA, before the phosphoryl group is transferred to the sugar substrate.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=48.10 E-value=18 Score=17.25 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=17.4
Q ss_pred HHHHHHHHCCCEEEEECCCCCC
Q ss_conf 7899998689879997278886
Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 102 ~L~~~l~~~g~~v~IETnGt~~ 123 (211)
.|=+.-+++|++|.+||.|+.=
T Consensus 19 ale~~Ak~~g~~vkVETQG~~G 40 (85)
T TIGR00829 19 ALEKAAKKRGWEVKVETQGSVG 40 (85)
T ss_pred HHHHHHHHCCCEEEEEECCCCC
T ss_conf 9999998469978888527518
No 119
>PRK10329 glutaredoxin-like protein; Provisional
Probab=48.03 E-value=8.7 Score=19.34 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-HHHHHHH
Q ss_conf 888877575232--58886607899999999987521667873899807720000351-7899998
Q gi|254780202|r 46 QCRFCDTDFVGI--QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN 108 (211)
Q Consensus 46 ~C~~CDT~y~~~--~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~-~L~~~l~ 108 (211)
.|..|+...-+. .+-.....++++--+.++.+...+-...+ ||++|++..-- .. ..++.|.
T Consensus 10 ~C~qC~aTKr~L~~~gI~y~~vdi~~dpea~~~vk~~G~~q~P-VV~~~~~~wsG-FRPD~i~~L~ 73 (81)
T PRK10329 10 DCVQCHATKRAMESRGFDFEMINVDRVPEAADTLRAQGFRQLP-VVIAGDLSWSG-FRPDMINRLH 73 (81)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCC-EEEECCCEECC-CCHHHHHHHH
T ss_conf 9824798999999879942998589999999999976985599-89969954436-0989999888
No 120
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=47.42 E-value=16 Score=17.61 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCC-CCHHHHHHHHCCC---EEEEECCC-CCC--CCCCCEE
Q ss_conf 003-5178999986898---79997278-886--6788507
Q gi|254780202|r 97 LQV-DVPLIQALNKRGF---EIAVETNG-TIE--PPQGIDW 130 (211)
Q Consensus 97 lq~-l~~L~~~l~~~g~---~v~IETnG-t~~--~~~~~d~ 130 (211)
.|+ ..|-|+.|.++.- +|-||||| ++| +..-++|
T Consensus 79 VaDdF~Ptm~~LL~R~~~~DHIlIETSGLALPKPLV~AF~W 119 (349)
T TIGR02475 79 VADDFIPTMTKLLARRERPDHILIETSGLALPKPLVQAFQW 119 (349)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCHHHHHHCCC
T ss_conf 20125679999970388986688744210022158864688
No 121
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=46.83 E-value=23 Score=16.43 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE-EEECCCCCCCCCC---HHHHHHHHCCCE-EEEE
Q ss_conf 8888775752325888660789999999998752166787389-9807720000351---789999868987-9997
Q gi|254780202|r 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC-VLTGGEPLLQVDV---PLIQALNKRGFE-IAVE 117 (211)
Q Consensus 46 ~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~V-viTGGEPllq~l~---~L~~~l~~~g~~-v~IE 117 (211)
.|.||= |.....-.=..++.+||...++.....+ +.++| .+||=-+-.=.+. ..++.++.. |. ++||
T Consensus 88 ~C~YCG--F~~~NKIkR~~Ln~~Ei~~E~~aI~k~g--Pf~~iLlvtGE~e~~~g~~Yi~~~~~l~k~~-F~~l~iE 159 (378)
T TIGR02351 88 KCVYCG--FSMSNKIKRKKLNEEEIEREIEAIKKSG--PFKEILLVTGESEKAAGVEYIEEAIKLAKEY-FSSLAIE 159 (378)
T ss_pred CCCCCC--CCCCCCHHHCCCCHHHHHHHHHHHHHCC--CCHHEEEECCCCCCCCCHHHHHHHHHHHHHH-CCCCEEE
T ss_conf 521046--5786730200488889999999986207--7013001115777558837899999998752-7854488
No 122
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=45.03 E-value=25 Score=16.25 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=29.4
Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEE-EECCCCCCC
Q ss_conf 3899807720000-35178999986898799-972788866
Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIA-VETNGTIEP 124 (211)
Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~-IETnGt~~~ 124 (211)
..++|||-+-|.. ++.+|++.|+..|-++. .+.+|..|+
T Consensus 111 ~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~~~g~~Pl 151 (662)
T PRK11860 111 GEFELSGVPRMHERPIGDLVDALRQLGCRIDYLGNEGFPPL 151 (662)
T ss_pred CEEEEECCCCHHHCCHHHHHHHHHHCCCEEEEECCCCCCCE
T ss_conf 83999876311009728999999987996998268997655
No 123
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=43.75 E-value=9.6 Score=19.04 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=11.3
Q ss_pred CCCCEEEEECCCCCC
Q ss_conf 373159997689888
Q gi|254780202|r 20 AGRVAVFCRFSGCNL 34 (211)
Q Consensus 20 ~G~p~vFiRl~GCnL 34 (211)
=+-|+||=|=.||-|
T Consensus 15 R~FPtvF~~AkG~~L 29 (413)
T TIGR02407 15 RSFPTVFEKAKGSTL 29 (413)
T ss_pred CCCHHHHHHCCCCEE
T ss_conf 886035431226578
No 124
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=43.53 E-value=26 Score=16.10 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=51.0
Q ss_pred EEEEEEC-CCCCCCC--CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2447751-0558401--373159997689888755533332368888775752325888660789999999998752166
Q gi|254780202|r 6 IKEIFLT-LQGEGGH--AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 (211)
Q Consensus 6 i~EiF~S-iQGEG~~--~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 82 (211)
+.|||.+ +--|-.| .-+...---++||-| -..|. ||+.|...... .-..-.+.-..+..+....
T Consensus 30 ~aEifGtELa~~~~Y~F~n~K~~Iyt~~gc~L---------~veg~-~~~~yv~~~tp---m~~i~Nlhf~lek~rm~n~ 96 (424)
T COG5623 30 LAEIFGTELANERWYAFRNTKTFIYTFSGCKL---------KVEGA-CDLQYVSDTTP---MPLIFNLHFFLEKRRMFNY 96 (424)
T ss_pred CHHHHCHHHCCCCCEEEEEEEEEEEEEECCEE---------EEECC-CCCEEEECCCC---HHHHHHHHHHHHHHCCCCC
T ss_conf 16551212305885234640033899746279---------98658-64100014766---0345569999976312333
Q ss_pred CCCCEEEEECCCCCCCC-C-CHHHHHHHHCCCE-EEEECCCC
Q ss_conf 78738998077200003-5-1789999868987-99972788
Q gi|254780202|r 83 KEGRYCVLTGGEPLLQV-D-VPLIQALNKRGFE-IAVETNGT 121 (211)
Q Consensus 83 ~~~~~VviTGGEPllq~-l-~~L~~~l~~~g~~-v~IETnGt 121 (211)
-..+.|++-||--.-.. + ..|+....+.|++ +.++-.-+
T Consensus 97 e~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl~~nlDP~ 138 (424)
T COG5623 97 EKGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPLFTNLDPS 138 (424)
T ss_pred CCCCEEEEECCCCCCCEEHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 549779998887678310899999999971677507854888
No 125
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=42.95 E-value=27 Score=16.04 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=51.2
Q ss_pred CCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC------------CCCE-
Q ss_conf 31599976-898887555333323688887757523258886607899999999987521667------------8738-
Q gi|254780202|r 22 RVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK------------EGRY- 87 (211)
Q Consensus 22 ~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~------------~~~~- 87 (211)
++--.+|. -|||= +|.+|=-+- .. ....-.++++|++.++.|...+.+ +...
T Consensus 163 r~YAYlKvaEGC~~-----------~CaFCiIP~--~r-G~~rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~YG~DL~ 228 (475)
T TIGR01125 163 RHYAYLKVAEGCNR-----------RCAFCIIPS--LR-GKLRSRPIEEILKEAKRLVDQGVKEIILIAQDTTAYGVDLY 228 (475)
T ss_pred CCEEEEEECCCCCC-----------CCCEECCCC--CC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE
T ss_conf 74036870057789-----------865213623--36-77677688889999999984398389999640347764111
Q ss_pred --EEEECCCCCCCCCCHHHHHHHHCC-C-EEEE
Q ss_conf --998077200003517899998689-8-7999
Q gi|254780202|r 88 --CVLTGGEPLLQVDVPLIQALNKRG-F-EIAV 116 (211)
Q Consensus 88 --VviTGGEPllq~l~~L~~~l~~~g-~-~v~I 116 (211)
-..--|||.-+.|..|++.|.+.+ . ++-+
T Consensus 229 ~R~~~~~~e~v~~~L~~Ll~~L~k~~G~~WiR~ 261 (475)
T TIGR01125 229 TRESEFDGEQVKSKLVELLEELGKLGGIYWIRL 261 (475)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 105522401457899999997400589622788
No 126
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=42.39 E-value=27 Score=15.98 Aligned_cols=41 Identities=32% Similarity=0.398 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 67873899807720000351789999868987999727888
Q gi|254780202|r 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 82 ~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211)
+++.+.|||++|=|-+-.-.+|++.|-+.|+.---=--||+
T Consensus 121 G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtI 161 (717)
T COG4981 121 GAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTI 161 (717)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 99724179726988489999999987645861687667729
No 127
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=41.58 E-value=28 Score=15.90 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--C-CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 886607899999999987521667873899807720000--3-51789999868987999727888
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V-DVPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq--~-l~~L~~~l~~~g~~v~IETnGt~ 122 (211)
..+...+.+++...++.+.... .....|++.|-=|--- + ...|++.++..|-+|.++|+|.-
T Consensus 106 ~~Gp~is~~~~~~~l~~~~~~l-~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~ 170 (310)
T COG1105 106 FPGPEISEAELEQFLEQLKALL-ESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEA 170 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 8899889999999999999756-6488999908899999979999999999865983999798599
No 128
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=41.46 E-value=23 Score=16.44 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=18.1
Q ss_pred EEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9997689888755533332368-8887757523258886607899999999987
Q gi|254780202|r 25 VFCRFSGCNLWSGREQDRLSAQ-CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 (211)
Q Consensus 25 vFiRl~GCnL~c~~~~~~~~~~-C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~ 77 (211)
+-|=|||=|+ .. ++|-+..-.. -...+--+...+++.|.+.
T Consensus 70 aviNLAG~~i----------~~P~RWt~~~K~~--i~~SRi~~T~~L~~~i~~~ 111 (307)
T TIGR01777 70 AVINLAGEPI----------ADPKRWTEERKQE--IRDSRIDTTRALVEAIAAA 111 (307)
T ss_pred EEEECCCCCC----------CCCCCCCHHHHHH--HHHCCHHHHHHHHHHHHHC
T ss_conf 7985568885----------7788878777575--6523347899999999846
No 129
>TIGR01196 edd phosphogluconate dehydratase; InterPro: IPR004786 Two dehydratases, dihydroxy-acid dehydratase (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (gene edd) have been shown to be evolutionary related . Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyzes the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster . This family defines the 6-phosphogluconate dehydratases.; GO: 0004456 phosphogluconate dehydratase activity, 0009255 Entner-Doudoroff pathway.
Probab=41.18 E-value=17 Score=17.33 Aligned_cols=57 Identities=33% Similarity=0.614 Sum_probs=40.4
Q ss_pred ECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC-----CCCCCCEEEEECCC--C-CCCCCCCCHHHHH
Q ss_conf 07720000351789999868987999727888-----66788507984167--7-7410012123566
Q gi|254780202|r 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTI-----EPPQGIDWICVSPK--A-GCDLKIKGGQELK 150 (211)
Q Consensus 91 TGGEPllq~l~~L~~~l~~~g~~v~IETnGt~-----~~~~~~d~it~SPK--~-~~~~~~~~~~ElK 150 (211)
.=|=|=||+|.+.+-.|.++||||+|=|-|=. .+|.-|+ +||= . +.-.+++.+|-|+
T Consensus 489 ANGMPELHKLTp~LG~LQDRGfKVALvTDGRmSGASGKVPaAIH---vtPEA~~GG~iAkirdGD~iR 553 (614)
T TIGR01196 489 ANGMPELHKLTPPLGVLQDRGFKVALVTDGRMSGASGKVPAAIH---VTPEALEGGPIAKIRDGDLIR 553 (614)
T ss_pred CCCCCCCHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCC---CCHHHHCCCCEEEEECCCEEE
T ss_conf 87485712015300042408625999866721376766374121---666785589747862387889
No 130
>pfam11051 Mannosyl_trans3 Mannosyltransferase putative. This family is conserved in fungi. Several members are annotated as being alpha-1,3-mannosyltransferase but this could not be confirmed.
Probab=40.76 E-value=20 Score=16.82 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=16.7
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHCCCE--EEEECCC
Q ss_conf 3899807720000351789999868987--9997278
Q gi|254780202|r 86 RYCVLTGGEPLLQVDVPLIQALNKRGFE--IAVETNG 120 (211)
Q Consensus 86 ~~VviTGGEPllq~l~~L~~~l~~~g~~--v~IETnG 120 (211)
+.||++||+-.+-....|+..|++.|-+ |+|=-.|
T Consensus 2 rGIV~~~g~~~~~~~~~lI~~LR~lgn~LPIEI~~~~ 38 (263)
T pfam11051 2 RGIVLTAGGKYLLLALRLIRVLRALGNTLPIEIVYPG 38 (263)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 8899982765289999999999983998887999679
No 131
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715 L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate. Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=40.47 E-value=28 Score=15.88 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=27.6
Q ss_pred EEEECCCCC--CC--CCCHH---HHHHHHCCCEEEEECCCCCC
Q ss_conf 998077200--00--35178---99998689879997278886
Q gi|254780202|r 88 CVLTGGEPL--LQ--VDVPL---IQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 88 VviTGGEPl--lq--~l~~L---~~~l~~~g~~v~IETnGt~~ 123 (211)
-+||+++.- +. .+.+| +..|++.|++|-|=|||.+.
T Consensus 10 S~Lt~~~g~h~l~~~~i~~lv~~v~~L~~~Gh~vviVSSGA~A 52 (379)
T TIGR01027 10 SSLTGSSGSHELDRSRIAELVEQVAALHAAGHEVVIVSSGAVA 52 (379)
T ss_pred CEEECCCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 2111788874137799999999999998659989998167588
No 132
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=40.29 E-value=29 Score=15.77 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEE-EEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf 60789999999998752166787389-98077200003-51789999868987999
Q gi|254780202|r 63 GRYNVDQLADLIEEQWITGEKEGRYC-VLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~~~V-viTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211)
..++.++|.+.+.+... ..+.| =+-||.|.+.- ..+-+.+|.+.|+...|
T Consensus 62 h~~~QeeIn~lLV~~A~----~Gk~VVRLKgGDP~VFGRggEE~~aL~~aGI~fEV 113 (474)
T PRK07168 62 HIMRQEMINAHLLQFAK----EGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEI 113 (474)
T ss_pred CCCCHHHHHHHHHHHHH----CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 88799999999999997----79929997378985301359999999987996799
No 133
>pfam00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases. This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.
Probab=39.80 E-value=30 Score=15.72 Aligned_cols=52 Identities=27% Similarity=0.432 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEE
Q ss_conf 78999999999875216678738998077200003-517899998689879997
Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE 117 (211)
Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IE 117 (211)
...+++.+.++...... .....+.++.|.|+++. ...+++.+.+.|+.+.+-
T Consensus 53 ~~~~~~~~~~~~~~~~~-~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~v~ii 105 (200)
T pfam00590 53 IPYEEIAELLEAAALLR-EGKDVVVLVSGDPLVYGTGSYLVEALEAEGIEVEVI 105 (200)
T ss_pred CCHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 88899999999999997-899499996899863448999999998739994898
No 134
>pfam01212 Beta_elim_lyase Beta-eliminating lyase.
Probab=39.15 E-value=30 Score=15.65 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=49.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE------CCCCCCC-CCCHHHHHHHHCCCEEEEE---------CCCCC--
Q ss_conf 8660789999999998752166787389980------7720000-3517899998689879997---------27888--
Q gi|254780202|r 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLT------GGEPLLQ-VDVPLIQALNKRGFEIAVE---------TNGTI-- 122 (211)
Q Consensus 61 ~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT------GGEPllq-~l~~L~~~l~~~g~~v~IE---------TnGt~-- 122 (211)
...+++++++.+.+...........+.|+|+ ||-|.-. .+..+.+.-+++|+++|+. ..|.-
T Consensus 105 ~~G~~~~~~l~~~i~~~~~~h~~~~~~v~le~t~n~~gG~~~~~~el~~i~~~a~~~gl~lHmDGARl~nA~~a~~~~~~ 184 (288)
T pfam01212 105 EAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLDGARLANAAVALGVIVK 184 (288)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEECCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCHH
T ss_conf 78982999999987644985467654799995544889665578999999999998099376308789888876099988
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 667885079841677
Q gi|254780202|r 123 EPPQGIDWICVSPKA 137 (211)
Q Consensus 123 ~~~~~~d~it~SPK~ 137 (211)
++....|-+++|-++
T Consensus 185 e~~~~~D~v~~~~sK 199 (288)
T pfam01212 185 EITSYADSVSMSLSK 199 (288)
T ss_pred HHHCCCCEEEEEEEC
T ss_conf 985468889998435
No 135
>PRK04160 diphthine synthase; Provisional
Probab=37.69 E-value=32 Score=15.50 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=29.9
Q ss_pred CCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 738998077200003-51789999868987999727888
Q gi|254780202|r 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 85 ~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~ 122 (211)
.+.+.+++|.|+..- ..+|+.+++++|+.+.+=-|-|.
T Consensus 76 k~Va~Lv~GDP~~atTH~~l~~~a~~~gI~v~VIhg~Si 114 (259)
T PRK04160 76 KDVALLTAGDPMVATTHVDLRLEARKKGIEVRIIHGVSI 114 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 888999538855500499999999987997899777429
No 136
>KOG2900 consensus
Probab=37.49 E-value=32 Score=15.48 Aligned_cols=43 Identities=16% Similarity=0.354 Sum_probs=22.3
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9997689888755533332368888775--752325888660789999999998752
Q gi|254780202|r 25 VFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWI 79 (211)
Q Consensus 25 vFiRl~GCnL~c~~~~~~~~~~C~~CDT--~y~~~~~~~~~~~~~~~i~~~i~~~~~ 79 (211)
.=|..+||.= .|.||-- .|.. .-.....+.+|++++..++...
T Consensus 87 lsIKtGGCsE-----------DCkYCaQSSRy~T-GvKA~klmk~DeVi~~Ak~AK~ 131 (380)
T KOG2900 87 LSIKTGGCSE-----------DCKYCAQSSRYDT-GVKAEKLMKVDEVIKEAKEAKR 131 (380)
T ss_pred EEEECCCCCC-----------CCCHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8750588651-----------2211010034654-4027877409999999999886
No 137
>KOG2492 consensus
Probab=37.35 E-value=21 Score=16.73 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=50.6
Q ss_pred CCEEEEEECCCCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 0124477510558401373159997-689888755533332368888775752325888660789999999998752166
Q gi|254780202|r 4 YSIKEIFLTLQGEGGHAGRVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 (211)
Q Consensus 4 ~~i~EiF~SiQGEG~~~G~p~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 82 (211)
+..-|.+-.+|---...-.++.||- .-|||= -|.||=.+|+- ..++..++..|++.+.+++..+
T Consensus 201 Lsldetyadv~pvr~~~~s~tAFvSiMRGCdN-----------MCtyCiVpftr---GreRsrpi~siv~ev~~L~~qG- 265 (552)
T KOG2492 201 LSLDETYADVQPVRVSSSSTTAFVSIMRGCDN-----------MCTYCIVPFTR---GRERSRPIESIVEEVKRLAEQG- 265 (552)
T ss_pred EECCCHHCCCCEEECCCCCCHHHHHHHHCCCC-----------CCCEEEEECCC---CCCCCCCHHHHHHHHHHHHHCC-
T ss_conf 86140110254045167663347988756455-----------44558775257---7545774689999998776547-
Q ss_pred CCCCEEEEECCCCCCC
Q ss_conf 7873899807720000
Q gi|254780202|r 83 KEGRYCVLTGGEPLLQ 98 (211)
Q Consensus 83 ~~~~~VviTGGEPllq 98 (211)
.+-|++-|-.---+
T Consensus 266 --~KeVTLLGQNVNSy 279 (552)
T KOG2492 266 --VKEVTLLGQNVNSY 279 (552)
T ss_pred --CEEEEEECCCCCCC
T ss_conf --40366301454433
No 138
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=36.86 E-value=33 Score=15.42 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC--CCC-CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 8660789999999998752166787389980772000--035-1789999868987999727888
Q gi|254780202|r 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVD-VPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 61 ~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll--q~l-~~L~~~l~~~g~~v~IETnGt~ 122 (211)
.+...+.+++.+.++.+.... .....|+++|-=|-- .+. ..|++.+++.|.++-++|+|..
T Consensus 104 ~Gp~i~~~~~~~ll~~~~~~~-~~~d~vvisGSlP~g~~~~~y~~li~~~~~~g~~vilD~sg~~ 167 (309)
T PRK13508 104 KGPEIDVQEADGFLHHFKQLL-EKVEVVAISGSLPAGLPQDYYAQLIELANNKGKKVVLDCSGAA 167 (309)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 799999999999999999870-5599999968889999859999999999855998999897699
No 139
>pfam01474 DAHP_synth_2 Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyse the first step of the shikimate pathway.
Probab=35.87 E-value=34 Score=15.31 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf 88660789999999998752166787389980--77200003517899998689879
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFEI 114 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~v 114 (211)
+-|..++.+++++.++.+.+... +.+...|| |-.=....+-+|+++.++.|..|
T Consensus 286 KvGP~~~~~el~~l~~~LnP~~e-pGRltLI~RmGa~~v~~~LP~li~aV~~~g~~V 341 (437)
T pfam01474 286 KVGPSTTPDELLRLIDRLNPDNE-PGRLTLITRMGADKVREVLPPLIRAVKAEGRNV 341 (437)
T ss_pred EECCCCCHHHHHHHHHHHCCCCC-CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 67999999999999997398889-973999852671789877299999999779970
No 140
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=34.63 E-value=33 Score=15.39 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=22.6
Q ss_pred ECCCCCCC--CCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 07720000--351789999868987999727888
Q gi|254780202|r 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 91 TGGEPllq--~l~~L~~~l~~~g~~v~IETnGt~ 122 (211)
++|+|++. .+.+++....++|..+.+..-|-.
T Consensus 312 ~~G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~ 345 (535)
T COG1574 312 PSGELLLTEEELEELVRAADERGLPVAVHAIGDG 345 (535)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 8886354999999999999977991799981669
No 141
>pfam03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyse the second step in the biosynthetic pathway for lipid A.
Probab=34.47 E-value=36 Score=15.17 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=50.4
Q ss_pred ECCCCCCCCCCCCE-------------EEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHH
Q ss_conf 51055840137315-------------999768--988875553333236888877575232588-86607899999999
Q gi|254780202|r 11 LTLQGEGGHAGRVA-------------VFCRFS--GCNLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLI 74 (211)
Q Consensus 11 ~SiQGEG~~~G~p~-------------vFiRl~--GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~-~~~~~~~~~i~~~i 74 (211)
-|++|=|.|+|+++ +|+|.- |-+. .....+.-.||.....-+. ...-.|++-++..+
T Consensus 10 v~~~GiGLHsG~~v~v~l~PA~~~tGI~F~R~Dl~~~~~-------I~a~~~~V~~t~~~T~l~~~~~~V~TvEHLlAAL 82 (276)
T pfam03331 10 VSVSGVGLHTGKKSTLTLEPAKENTGIVFQRTDLSPYPI-------IPARPENVRDTMLSTTLGNDGARISTVEHLLAAL 82 (276)
T ss_pred EEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCE-------EEECHHHCCCHHHHCEEECCCCEEEEHHHHHHHH
T ss_conf 799999835796888999958999858999924999937-------9855667116002103405995997299999999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHCCCE
Q ss_conf 9875216678738998077200003--51789999868987
Q gi|254780202|r 75 EEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFE 113 (211)
Q Consensus 75 ~~~~~~~~~~~~~VviTGGEPllq~--l~~L~~~l~~~g~~ 113 (211)
..+.. ..=.|.+.|.|+=+=+ -.++++.+++.|+.
T Consensus 83 ~glgI----DN~~Ieidg~EvPIlDGSa~~fv~~i~~aGi~ 119 (276)
T pfam03331 83 AGLGI----DNLIIEVDGPEIPIMDGSALPFVELIDQAGIK 119 (276)
T ss_pred HHCCC----CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 97698----63999979978883378789999999970987
No 142
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=34.38 E-value=36 Score=15.16 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHCCCCCCCE-EEEECCCCCCCC--CCHHHHHHHHCCCE-EEEECCCCCCCCCCCEEEE
Q ss_conf 9999999875216678738-998077200003--51789999868987-9997278886678850798
Q gi|254780202|r 69 QLADLIEEQWITGEKEGRY-CVLTGGEPLLQV--DVPLIQALNKRGFE-IAVETNGTIEPPQGIDWIC 132 (211)
Q Consensus 69 ~i~~~i~~~~~~~~~~~~~-VviTGGEPllq~--l~~L~~~l~~~g~~-v~IETnGt~~~~~~~d~it 132 (211)
.+.+.+.+... .+...+ |-+||-+|++-+ +..+++.+.+.++. +.-....++|.-....+++
T Consensus 74 dvl~R~~~a~~--~~~~d~ivri~gD~P~idp~~id~~i~~~~~~~~Dyvsn~~~~~~P~G~~~ei~s 139 (233)
T cd02518 74 DVLGRYYQAAE--EYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLDVEVFT 139 (233)
T ss_pred HHHHHHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEH
T ss_conf 58899999987--1578889997687775898999999999850799989447899888816999881
No 143
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254; InterPro: IPR011951 This family consists of uncharacterised proteobacterial and Gram-positive bacterial sequences including YjjG from Escherichia coli and YfnB from Bacillus subtilis..
Probab=34.35 E-value=32 Score=15.50 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.3
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 5178999986898799972788866
Q gi|254780202|r 100 DVPLIQALNKRGFEIAVETNGTIEP 124 (211)
Q Consensus 100 l~~L~~~l~~~g~~v~IETnGt~~~ 124 (211)
-.+|++.|+.+.+++.|=|||-..+
T Consensus 108 A~el~~~L~~~d~~l~ivtNG~~~~ 132 (233)
T TIGR02254 108 ALELMEALQKKDLRLYIVTNGVREV 132 (233)
T ss_pred HHHHHHHHCCCCCEEEEEECCHHHH
T ss_conf 7999998700771378887770667
No 144
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=34.06 E-value=36 Score=15.12 Aligned_cols=67 Identities=16% Similarity=0.385 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCC----C---CHHHHHHHHCCC---E
Q ss_conf 8888775752325-88866078999999999875216678738998077-200003----5---178999986898---7
Q gi|254780202|r 46 QCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQV----D---VPLIQALNKRGF---E 113 (211)
Q Consensus 46 ~C~~CDT~y~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG-EPllq~----l---~~L~~~l~~~g~---~ 113 (211)
.|.+|= |.-.+ ..++-.++.+||.+.++++... ++.=|+|=|| -|=+-- + .+|++..++.-= .
T Consensus 18 ~C~FCA--F~~~~k~~~~Y~Ls~eEI~~Kv~ea~~~---G~tE~~iQGGlnP~~~~nGssl~yy~~l~~~Ik~~~pPyG~ 92 (331)
T TIGR00423 18 KCKFCA--FRRREKDKDAYVLSLEEILRKVKEAVAK---GATEICIQGGLNPQLDINGSSLEYYEELFRAIKQEFPPYGD 92 (331)
T ss_pred CCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 479633--1134689888140779999999999971---98278852342788764541499999999999741789652
Q ss_pred EEEE
Q ss_conf 9997
Q gi|254780202|r 114 IAVE 117 (211)
Q Consensus 114 v~IE 117 (211)
|||.
T Consensus 93 ~hiH 96 (331)
T TIGR00423 93 VHIH 96 (331)
T ss_pred EEEE
T ss_conf 4761
No 145
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=33.56 E-value=35 Score=15.20 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=21.0
Q ss_pred HHHHHHHHCCCEEEE--ECCCCCCCCCC
Q ss_conf 789999868987999--72788866788
Q gi|254780202|r 102 PLIQALNKRGFEIAV--ETNGTIEPPQG 127 (211)
Q Consensus 102 ~L~~~l~~~g~~v~I--ETnGt~~~~~~ 127 (211)
.-+++|.++|+.||+ +|||.+.+.++
T Consensus 396 GT~~RLv~QGHeVHVAYqTSGNIAV~D~ 423 (660)
T PRK02122 396 GTFRRLVEQGHDVHVAYQTSGNIAVGDE 423 (660)
T ss_pred HHHHHHHHCCCEEEEEEECCCCEEECCH
T ss_conf 7799999669857999965773222528
No 146
>KOG3454 consensus
Probab=33.46 E-value=12 Score=18.46 Aligned_cols=12 Identities=33% Similarity=1.049 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8888775752325
Q gi|254780202|r 46 QCRFCDTDFVGIQ 58 (211)
Q Consensus 46 ~C~~CDT~y~~~~ 58 (211)
=|.|||| |...+
T Consensus 5 yCDYCdt-~LthD 16 (165)
T KOG3454 5 YCDYCDT-YLTHD 16 (165)
T ss_pred HHHHHHH-HHHCC
T ss_conf 5533221-34056
No 147
>KOG2749 consensus
Probab=32.94 E-value=38 Score=15.00 Aligned_cols=97 Identities=20% Similarity=0.128 Sum_probs=49.4
Q ss_pred EEEEE-CCCCCCCCC----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 44775-105584013----7315999768988875553333236888877575232588866078999999999875216
Q gi|254780202|r 7 KEIFL-TLQGEGGHA----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 (211)
Q Consensus 7 ~EiF~-SiQGEG~~~----G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~ 81 (211)
.|||- -+-=|-.|+ -++++|. .+||-|+ -|.=||+.|.+.+..--..+++-..++.+.......
T Consensus 31 AEIFGtEL~~~~~ytF~~~~k~aifT-w~Gctle----------v~G~t~~~YVs~eTpM~~ylNlH~ale~~R~~~e~~ 99 (415)
T KOG2749 31 AEIFGTELALEKWYTFPNGMKVAIFT-WQGCTLE----------VEGTTEVEYVSDETPMVLYLNLHAALEKRRMQAEEE 99 (415)
T ss_pred HHHHCCCCCCCCCEECCCCCEEEEEE-EECCEEE----------EECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64312223468856568885589999-8263899----------943524158518987300013999999986655420
Q ss_pred CCCCCEEEEECCCCCCCC-C-CHHHHHHHHCCCEE
Q ss_conf 678738998077200003-5-17899998689879
Q gi|254780202|r 82 EKEGRYCVLTGGEPLLQV-D-VPLIQALNKRGFEI 114 (211)
Q Consensus 82 ~~~~~~VviTGGEPllq~-l-~~L~~~l~~~g~~v 114 (211)
....+.|++-|+--.=-. + .-|+....+.|.+.
T Consensus 100 ~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749 100 SSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 02597799989876566789999999998717865
No 148
>PRK08035 type III secretion system protein; Validated
Probab=32.87 E-value=38 Score=14.99 Aligned_cols=10 Identities=40% Similarity=0.501 Sum_probs=8.2
Q ss_pred ECCCCCCCCC
Q ss_conf 5105584013
Q gi|254780202|r 11 LTLQGEGGHA 20 (211)
Q Consensus 11 ~SiQGEG~~~ 20 (211)
|+|||||.|-
T Consensus 32 ~~~~geGv~l 41 (326)
T PRK08035 32 YPVQGEGVLL 41 (326)
T ss_pred CCCCCCEEEE
T ss_conf 4536854899
No 149
>TIGR01460 HAD-SF-IIA HAD-superfamily hydrolase, subfamily IIA; InterPro: IPR006357 These sequences form one of the structural subclass of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs . The classes are defined based on the location and the observed or predicted fold of a so-called "capping domain" , or the absence of such a domain. Class I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Class II consists of sequences in which the capping domain is found between the second and third motifs. Class III sequences have no capping domain in either of these positions. The Class IIA capping domain is predicted to consist of a mixed alpha-beta fold with the basic pattern: Helix-Helix-Helix-Sheet-Helix-Loop-Sheet-Helix-Sheet-Helix. Presently, this subfamily covers the eukaryotic phosphoglycolate phosphatase, as well as four further subfamilies covering closely related sequences in eukaryotes, in Gram-positive bacteria and in Gram-negative bacteria. The Escherichia coli NagD gene and the Bacillus subtilis AraL gene are members of this subfamily but are not members of the any of the presently defined equivalogs within it. NagD is part of the NAG operon responsible for N-acetylglucosamine metabolism . Genes from several organisms have been annotated as NagD, or NagD-like. However, without data on the presence of other members of this pathway, (such as in the case of Yersinia pestis) these assignments should not be given great weight. The AraL gene is similar and is part of the L-arabinose operon . A gene from Halobacterium has been annotated as AraL, but no other Ara operon genes have been annotated. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant. The structure of NagD from Escherichia coli K12 has been reported and its activity against various substrates determined. It has high specificity for nucleotide monophosphates, and in particular UMP and GMP. In the context of its occurrence in the NAG operon, it may well be involved in the recycling of cell wall metabolites . ; GO: 0016787 hydrolase activity, 0008152 metabolic process.
Probab=32.46 E-value=38 Score=14.95 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHCC----CEEEEECCCC-CC
Q ss_conf 8738998077200003517899998689----8799972788-86
Q gi|254780202|r 84 EGRYCVLTGGEPLLQVDVPLIQALNKRG----FEIAVETNGT-IE 123 (211)
Q Consensus 84 ~~~~VviTGGEPllq~l~~L~~~l~~~g----~~v~IETnGt-~~ 123 (211)
....|+++|..||+---.+.++.|++.| .++.+=||++ .+
T Consensus 4 D~DGVl~~g~~~lipGA~~~l~~l~~~gG~L~~~v~f~TN~~~~~ 48 (304)
T TIGR01460 4 DIDGVLWLGDKPLIPGAVEALARLRAKGGALKKPVVFLTNNSSRS 48 (304)
T ss_pred ECCEEEEECCEEECCCHHHHHHHHHHCCCCEEEEEEEEECCCCCC
T ss_conf 122379807621122278999999828995675488986799977
No 150
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=32.29 E-value=39 Score=14.93 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf 6078999999999875216678738998077200003-51789999868987999
Q gi|254780202|r 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211)
.....++|.+.+.++... ..+-|-+-||.|++.- --+-+..|.+.|+...+
T Consensus 63 ~~~~q~eIn~~lv~~a~~---G~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eV 114 (244)
T COG0007 63 HSKPQDEINALLVELARE---GKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEV 114 (244)
T ss_pred CCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEECCCHHHHHHHHHCCCCEEE
T ss_conf 777989999999999865---9969996079988336729999999985996599
No 151
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro: IPR006264 These sequences represent 5-enolpyruvyl shikimate-3-phosphate synthase (EPSP_synthase) (3-phosphoshikimate-1-carboxyvinyltransferase,aroA), which catalyzes the sixth of seven steps in the shikimate pathway of the biosynthesis of chorimate. Chorismate is last common precursor of all three aromatic amino acids. ; GO: 0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity.
Probab=32.05 E-value=39 Score=14.91 Aligned_cols=53 Identities=28% Similarity=0.296 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEE-ECCCCCCC
Q ss_conf 899999999987521667873899807720000-351789999868987999-72788866
Q gi|254780202|r 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAV-ETNGTIEP 124 (211)
Q Consensus 66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~I-ETnGt~~~ 124 (211)
|...++--|..+ .. ..++|||=|=|-- |+.+|++.|+..|-+|.= +.+|+.|+
T Consensus 84 T~~R~l~g~la~-----~~-~~~vl~Gd~SL~~RP~~~l~~aL~~lGa~i~~~~~~g~~Pl 138 (444)
T TIGR01356 84 TTARLLTGVLAL-----AS-GEVVLTGDESLRKRPMGRLVDALRQLGAEISSREGGGSLPL 138 (444)
T ss_pred HHHHHHHHHHHH-----CC-CCEEEECCCHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCE
T ss_conf 899999999985-----39-61899536102008870467998756959976078995457
No 152
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=31.82 E-value=21 Score=16.79 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=18.2
Q ss_pred CCCEEEECCCCCC-----CCHHHHHHHHHHHHHCC
Q ss_conf 8577998248842-----46888999999999678
Q gi|254780202|r 167 DFERFSLQPMDGP-----FLEENTNLAISYCFQNP 196 (211)
Q Consensus 167 ~~~~~~LqP~~~~-----~~~~~~~~~i~~~~~~~ 196 (211)
...-+.+-|+.|+ -.++-++.+.+||.+|.
T Consensus 200 ~vAa~v~EPvQGEGGFivp~k~fv~a~~~~C~ehg 234 (427)
T TIGR00700 200 NVAAVVIEPVQGEGGFIVPAKEFVAAVLDLCKEHG 234 (427)
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 04378973224788733385889999999754387
No 153
>PRK09732 hypothetical protein; Provisional
Probab=31.45 E-value=31 Score=15.54 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 731599976898887555333323688887757523258886607899999999987521667873899807720000
Q gi|254780202|r 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 (211)
Q Consensus 21 G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq 98 (211)
|.+-.|.|.-|+.+-....+..+ .|+. -....+..++.+.++.-........+.+.+-||.|+..
T Consensus 39 G~L~a~~RmDgA~~~S~~iA~~K---------A~TA----a~~~~~T~~~~~~~~~g~~~~~~~p~~~~~~GG~PI~~ 103 (134)
T PRK09732 39 GHLLALSRMDDCAPIAAYISQEK---------ARTA----ALGRRETKGYEEMVNNGRTAFVTAPLLTSLEGGVPVVV 103 (134)
T ss_pred CCEEEEEECCCCCCCCHHHHHHH---------HHHH----HCCCCCHHHHHHHHCCCCCCEECCCCEEEECCCEEEEE
T ss_conf 99988875499942409999999---------9998----34399879999986376510034897799769524999
No 154
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=30.82 E-value=41 Score=14.77 Aligned_cols=38 Identities=32% Similarity=0.303 Sum_probs=29.4
Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 3899807720000-3517899998689879997278886
Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
..+++||-+=|-. ++.+|++.|+..|-++.-.+++-++
T Consensus 110 ~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~ 148 (428)
T COG0128 110 GETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYL 148 (428)
T ss_pred CEEEEECCHHHHHCCCHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 709998783231097678899999779689946888867
No 155
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=30.74 E-value=41 Score=14.76 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=13.8
Q ss_pred CHHHHHHHHCCCEEEEECCCC
Q ss_conf 178999986898799972788
Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGT 121 (211)
Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt 121 (211)
.++++.|+++|+++.|=||.+
T Consensus 30 ~e~l~~L~~~G~~v~ivTn~~ 50 (139)
T cd01427 30 KEALKELKEKGIKLALATNKS 50 (139)
T ss_pred HHHHHHHHHCCCEEEEEECCC
T ss_conf 999999998799799992988
No 156
>TIGR01508 rib_reduct_arch diaminohydroxyphosphoribosylaminopyrimidine reductase; InterPro: IPR006401 These sequences represent a specific reductase of riboflavin biosynthesis in the archaea, diaminohydroxyphosphoribosylaminopyrimidine reductase. It should not be confused with bacterial 5-amino-6-(5-phosphoribosylamino)uracil reductase. The intermediate 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine in riboflavin biosynthesis is reduced first and then deaminated in both archaea and fungi, opposite to the order in bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain fused to the reductase domain, which is similar to this protein but found in most bacteria. .
Probab=30.37 E-value=42 Score=14.72 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=26.4
Q ss_pred CCHHHHHHHHCCCE-EEEECCCCCC---CCC-CCE--EEEECCC
Q ss_conf 51789999868987-9997278886---678-850--7984167
Q gi|254780202|r 100 DVPLIQALNKRGFE-IAVETNGTIE---PPQ-GID--WICVSPK 136 (211)
Q Consensus 100 l~~L~~~l~~~g~~-v~IETnGt~~---~~~-~~d--~it~SPK 136 (211)
|..|++.|+++|.+ +-+|=.|++- +.+ .+| -|++||+
T Consensus 138 L~~lld~L~~kgv~rLmvEGGG~Li~~l~~~~LvDEi~vy~aP~ 181 (224)
T TIGR01508 138 LEKLLDILEDKGVRRLMVEGGGTLIWSLIKENLVDEIRVYIAPK 181 (224)
T ss_pred HHHHHHHHHHCCCEEEEEECCCEEEHHHHHCCCEEEEEEEECCE
T ss_conf 68999998747970999824851010223028435899988146
No 157
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=30.04 E-value=42 Score=14.72 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=27.0
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 89980772000035178999986898799972788866
Q gi|254780202|r 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 (211)
Q Consensus 87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~~ 124 (211)
.|-||.|.---..+.++++.|.+.||++.= |.||...
T Consensus 2 nVliSv~d~dK~~~l~~a~~l~~lGf~l~A-T~GTa~~ 38 (116)
T cd01423 2 GILISIGSYSKPELLPTAQKLSKLGYKLYA-TEGTADF 38 (116)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHCCCEEEE-EHHHHHH
T ss_conf 299994020389999999999987999998-4189999
No 158
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945 This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=30.02 E-value=40 Score=14.83 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=26.2
Q ss_pred EEEECCC---CCCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 9980772---00003517899998689879997278886
Q gi|254780202|r 88 CVLTGGE---PLLQVDVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 88 VviTGGE---Pllq~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
..++|-- |+.-.+..+++.++++||++.+=||=-+-
T Consensus 95 ~~l~s~~q~tkl~p~m~~~i~~~~~~Gfkt~~lTNN~~l 133 (228)
T TIGR02247 95 ELLSSEIQVTKLLPEMVKAIKSLRAKGFKTALLTNNFYL 133 (228)
T ss_pred EEEECCEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 343064000256878999999997577758886167305
No 159
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR002315 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits , , . In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer, this family. It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA , and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain . The sequence and crystal structure of the homodimeric glycyl-tRNA synthetase from Thermus thermophilus, shows that each monomer consists of an active site strongly resembling that of the aspartyl and seryl enzymes, a C-terminal anticodon recognition domain of 100 residues and a third domain unusually inserted between motifs 1 and 2 almost certainly interacting with the acceptor arm of tRNA(Gly). The C-terminal domain has a novel five-stranded parallel-antiparallel beta-sheet structure with three surrounding helices. The active site residues most probably responsible for substrate recognition, in particular in the Gly binding pocket, can be identified by inference from aspartyl-tRNA synthetase due to the conserved nature of the class II active site , .; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=30.01 E-value=38 Score=14.98 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=14.6
Q ss_pred EEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 7998248842-4688899999999967897797
Q gi|254780202|r 170 RFSLQPMDGP-FLEENTNLAISYCFQNPKWRLS 201 (211)
Q Consensus 170 ~~~LqP~~~~-~~~~~~~~~i~~~~~~~~~Rls 201 (211)
.+++-|.-.. ..++....+...+.++ +|++.
T Consensus 513 kv~VlPLvnk~~l~~~a~~i~~~Lr~~-~i~~~ 544 (606)
T TIGR00389 513 KVAVLPLVNKEELKEIAKEIEQALRKS-GIIIE 544 (606)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHC-CCEEE
T ss_conf 799963115654078999999998626-97699
No 160
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=29.32 E-value=43 Score=14.60 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC----CCHHHHHHHHCCCE-EEE
Q ss_conf 888877575232588866078999999999875216678738998077200003----51789999868987-999
Q gi|254780202|r 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV----DVPLIQALNKRGFE-IAV 116 (211)
Q Consensus 46 ~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~----l~~L~~~l~~~g~~-v~I 116 (211)
.||-|.-+= ..+|.++|+|.|.+.. ...+.+++- |.... ...+.+.|++.||- |.|
T Consensus 117 ~CP~~~~~i--------~~qt~~~Ivd~i~~~~----~g~r~~lLA---P~Vr~~KG~f~~~l~~l~~~Gf~RV~v 177 (956)
T TIGR00630 117 YCPECGRPI--------EEQTVSQIVDQILALP----EGTRVILLA---PIVRGRKGEFRKLLEKLRKQGFARVRV 177 (956)
T ss_pred CCCCCCCHH--------HHCCHHHHHHHHHHCC----CCCEEEEEC---CCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 888777326--------4338789999986248----996589965---732477752899999998669618998
No 161
>PRK10637 cysG siroheme synthase; Provisional
Probab=29.28 E-value=43 Score=14.60 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf 6078999999999875216678738998077200003-51789999868987999
Q gi|254780202|r 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211)
...+.+++.+.+.++... +.+.|=+-||.|.++- ..+=++.|.+.|+.+++
T Consensus 275 ~~~~q~~i~~llv~~a~~---G~~VvRLk~GDP~ifGr~~EE~~~l~~~Gi~~eV 326 (457)
T PRK10637 275 HCVPQEEINQILLREAQK---GKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSV 326 (457)
T ss_pred CCCCHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 887899999999999858---9979998489986434389999999978998899
No 162
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=28.83 E-value=44 Score=14.55 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf 877575232588866078999999999875216678738998077200003517899998689879
Q gi|254780202|r 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 (211)
Q Consensus 49 ~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v 114 (211)
=||=+|-++..+ ++-.+......+++ ..+.-|-|=||||-+- ++++.|-+.|..|
T Consensus 82 v~DlPF~sY~~S--~~~Al~nA~~v~~e------~gA~avKLEGG~P~~~---e~v~~LT~~GvpV 136 (267)
T TIGR00222 82 VTDLPFMSYKES--PEQALKNAARVLQE------TGADAVKLEGGEPELV---ETVKALTEEGVPV 136 (267)
T ss_pred EECCCHHHHHCC--HHHHHHHHHHHHHH------CCCCEEEEECCCHHHH---HHHHHHHHCCCEE
T ss_conf 633740001126--78899999999732------3776576207880688---9999986278458
No 163
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminase; InterPro: IPR004637 This is a very small family, with two known examples at the time of model creation. This enzyme is a pyridoxal phosphate-containing class III aminotransferase and is quite similar to 4-aminobutyrate aminotransferase (2.6.1.19 from EC). Diaminobutyrate-2-oxoglutarate transaminase (2.6.1.76 from EC) is a homotetramer which catalyses the conversion of L-2,4-diaminobutyrate and 2-oxoglutarate to L-glutamate and L-aspartic 4-semialdehyde during 1,3-diaminopropane biosynthesis.; GO: 0008483 transaminase activity, 0009058 biosynthetic process.
Probab=28.64 E-value=7.7 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=9.0
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 73159997689888
Q gi|254780202|r 21 GRVAVFCRFSGCNL 34 (211)
Q Consensus 21 G~p~vFiRl~GCnL 34 (211)
+.|.+|-+-+||-|
T Consensus 20 ~lP~~~~~A~G~~~ 33 (445)
T TIGR00709 20 KLPLAFAKAQGCWV 33 (445)
T ss_pred CCCHHHHHCCCCEE
T ss_conf 44124240174279
No 164
>pfam09153 DUF1938 Domain of unknown function (DUF1938). Members of this family, which are predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopt a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. Their exact function has not, as yet, been defined, though it has been postulated that they confer thermostability to the archaeal protein.
Probab=28.09 E-value=36 Score=15.14 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.7
Q ss_pred EEECCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 98077200003517899998689879997278
Q gi|254780202|r 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 (211)
Q Consensus 89 viTGGEPllq~l~~L~~~l~~~g~~v~IETnG 120 (211)
.++|+|=|...+..|+..|.++|-++.+.---
T Consensus 30 SlDg~e~l~~ri~~L~~~L~kRgV~v~L~e~~ 61 (86)
T pfam09153 30 SLDGPEFLKHRISRLISHLEKRGVKLSLKEGN 61 (86)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 71638899999999999997179558875357
No 165
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=27.94 E-value=24 Score=16.29 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=24.1
Q ss_pred EEEECCCCCCCCCCHHHHHHHHCC--C-EEEEECCCCCCCCCC
Q ss_conf 998077200003517899998689--8-799972788866788
Q gi|254780202|r 88 CVLTGGEPLLQVDVPLIQALNKRG--F-EIAVETNGTIEPPQG 127 (211)
Q Consensus 88 VviTGGEPllq~l~~L~~~l~~~g--~-~v~IETnGt~~~~~~ 127 (211)
|+-|....|...+..+++.+.... + ++-|||+|.-.|.+-
T Consensus 61 iCCs~~~dl~~~l~~l~~~~~~~~~~~d~iiIE~SGla~P~~i 103 (158)
T cd03112 61 ICCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPV 103 (158)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHH
T ss_conf 4652251589999999997651578878899963687882899
No 166
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=27.43 E-value=47 Score=14.39 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEE-EECCCCCCC-CCCHHHHHHHHCCCEEEE---ECCCC
Q ss_conf 886607899999999987521667873899-807720000-351789999868987999---72788
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ-VDVPLIQALNKRGFEIAV---ETNGT 121 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~Vv-iTGGEPllq-~l~~L~~~l~~~g~~v~I---ETnGt 121 (211)
........++|.+++.++... .+.|| |=||.|++- .--+=++.|.+.|+...+ =|++.
T Consensus 57 ~g~h~~~Q~~IN~lLV~~A~~----G~~VVRLKGGDP~vFGRgGEE~~~L~~~GI~~EvvPGvTsA~ 119 (242)
T TIGR01469 57 PGHHSVKQEEINRLLVELARE----GKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAI 119 (242)
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCEEEEECCCCCCEECCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 962688978999999999853----985899748998437856899999996689798738811677
No 167
>pfam05166 YcgL YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. Homologues of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.
Probab=27.40 E-value=47 Score=14.38 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.0
Q ss_pred EEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf 8998077200003-51789999868987999
Q gi|254780202|r 87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 87 ~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211)
.+.+|+..+|.+. ....+++|.++||..++
T Consensus 41 ~l~Lt~~r~LA~~d~~~Vl~~l~~~GfyLQm 71 (74)
T pfam05166 41 DLNLTPEKKLARADVEKVLEALEEQGFYLQM 71 (74)
T ss_pred EEECCCCCHHHCCCHHHHHHHHHHCCEEEEC
T ss_conf 9840774132139999999999868978926
No 168
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.14 E-value=47 Score=14.35 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCC-----CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--CCCHHHHHHHHCC
Q ss_conf 32368888775752325---88866-----07899999999987521667873899807720000--3517899998689
Q gi|254780202|r 42 RLSAQCRFCDTDFVGIQ---GTKGG-----RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG 111 (211)
Q Consensus 42 ~~~~~C~~CDT~y~~~~---~~~~~-----~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq--~l~~L~~~l~~~g 111 (211)
.....|+||...+.... .-.+. -.-.+.+.+.+.++.+ ..+ |....++=+-- ....++..+.+..
T Consensus 429 ~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP----~~~-i~r~d~d~~~~~~~~~~~~~~~~~~~ 503 (699)
T PRK05580 429 GRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFP----GAR-VLRIDRDTTRRKGALEQLLEDFARGE 503 (699)
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC----CCC-EEEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf 9833226468836575546567997524111685999999997789----998-89984755678631688999974689
Q ss_pred CEEEEECCCCCCCCCCCE
Q ss_conf 879997278886678850
Q gi|254780202|r 112 FEIAVETNGTIEPPQGID 129 (211)
Q Consensus 112 ~~v~IETnGt~~~~~~~d 129 (211)
..|-| ||.++....|
T Consensus 504 ~dIlv---GTqmiakG~d 518 (699)
T PRK05580 504 ADILV---GTQMLAKGHD 518 (699)
T ss_pred CCEEE---CCCCCCCCCC
T ss_conf 87897---7733455677
No 169
>pfam08150 FerB FerB (NUC096) domain. This is central domain B in proteins of the Ferlin family.
Probab=26.81 E-value=41 Score=14.75 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=13.6
Q ss_pred CEEEEEECCCCC---CCCCCCCE-EEEECCC
Q ss_conf 124477510558---40137315-9997689
Q gi|254780202|r 5 SIKEIFLTLQGE---GGHAGRVA-VFCRFSG 31 (211)
Q Consensus 5 ~i~EiF~SiQGE---G~~~G~p~-vFiRl~G 31 (211)
|-.+|.||.-+| |.+.|+.+ +|+++-|
T Consensus 25 PA~~vLyS~~~~e~~Gk~CGk~qtifLk~P~ 55 (76)
T pfam08150 25 PAHQVLYSIVGEEECGKDCGKVQTVFLKYPM 55 (76)
T ss_pred CHHHEEECCCCHHHCCCCCCCEEEEEEECCC
T ss_conf 3574660478456605553651799997676
No 170
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=26.04 E-value=49 Score=14.22 Aligned_cols=30 Identities=43% Similarity=0.794 Sum_probs=22.9
Q ss_pred HCCCEEEEECCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 689879997278886678850798416777410
Q gi|254780202|r 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141 (211)
Q Consensus 109 ~~g~~v~IETnGt~~~~~~~d~it~SPK~~~~~ 141 (211)
++||-|+. |.+.++.++|.+.+.||.+-..
T Consensus 94 aHGFnI~y---~~I~pp~dvdVimVAPKgPG~~ 123 (165)
T pfam07991 94 AHGFNIHF---GQIKPPKDVDVIMVAPKGPGHL 123 (165)
T ss_pred CCCCEEEE---CCEEECCCCCEEEECCCCCCHH
T ss_conf 15757774---1076469986899888999747
No 171
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=25.95 E-value=49 Score=14.21 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=6.1
Q ss_pred EEEECCCCCC
Q ss_conf 9997689888
Q gi|254780202|r 25 VFCRFSGCNL 34 (211)
Q Consensus 25 vFiRl~GCnL 34 (211)
+-|-|+|=|+
T Consensus 59 avINLAG~~I 68 (297)
T COG1090 59 AVINLAGEPI 68 (297)
T ss_pred EEEECCCCCC
T ss_conf 8998889815
No 172
>TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process.
Probab=25.79 E-value=50 Score=14.19 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=14.2
Q ss_pred CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 1789999868987999727888
Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~ 122 (211)
.+|++.|+++||+|.+=+.|-.
T Consensus 92 ~Elv~~L~~~gykVav~SGGF~ 113 (223)
T TIGR00338 92 EELVKTLKEKGYKVAVISGGFD 113 (223)
T ss_pred HHHHHHHHHCCEEEEEEECCHH
T ss_conf 8999999886907999857768
No 173
>TIGR02183 GRXA Glutaredoxin, GrxA family; InterPro: IPR011902 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry includes the Escherichia coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase .; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=25.76 E-value=25 Score=16.23 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=10.0
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9976898887555333323688887
Q gi|254780202|r 26 FCRFSGCNLWSGREQDRLSAQCRFC 50 (211)
Q Consensus 26 FiRl~GCnL~c~~~~~~~~~~C~~C 50 (211)
|+-..||+ +|+||
T Consensus 1 ~v~IfGr~------------gC~YC 13 (86)
T TIGR02183 1 FVVIFGRP------------GCPYC 13 (86)
T ss_pred CEEEECCC------------CCCHH
T ss_conf 95773279------------98402
No 174
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=25.66 E-value=50 Score=14.18 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCCCC-CCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 200003-517899998689879997278886
Q gi|254780202|r 94 EPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 (211)
Q Consensus 94 EPllq~-l~~L~~~l~~~g~~v~IETnGt~~ 123 (211)
++.+.+ ..++++.|+++|+++.|=||....
T Consensus 85 ~~~~~pG~~elL~~L~~~gi~~av~T~~~~~ 115 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRD 115 (220)
T ss_pred CCEECCCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 9806711999999999879977663599779
No 175
>PRK13186 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed
Probab=25.61 E-value=50 Score=14.17 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=51.6
Q ss_pred ECCCCCCCCCCCCE-------------EEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHH
Q ss_conf 51055840137315-------------99976--8988875553333236888877575232588-86607899999999
Q gi|254780202|r 11 LTLQGEGGHAGRVA-------------VFCRF--SGCNLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLI 74 (211)
Q Consensus 11 ~SiQGEG~~~G~p~-------------vFiRl--~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~-~~~~~~~~~i~~~i 74 (211)
-|++|=|.|+|+++ +|+|. .|-+. .+.. ...-.||..+..-+. ...-.|++-++..+
T Consensus 11 v~~~GiGLHsG~~~~v~l~PA~~~tGI~F~R~Dl~~~~~------I~A~-~~~V~~t~~~T~L~~~g~~V~TVEHLLAAL 83 (299)
T PRK13186 11 VSATGVGLHSGKKVTLTLRPAPANTGIVFRRTDLDPPVE------IPAR-ADNVGDTRLCTTLGNGGVRVSTVEHLMAAL 83 (299)
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCCCCCE------EEEE-HHHCCCCCCCCEEECCCEEEEEHHHHHHHH
T ss_conf 799989925797888999948999758999914899827------9987-410567776378805984997499999999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHCCCEE
Q ss_conf 9875216678738998077200003--517899998689879
Q gi|254780202|r 75 EEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 (211)
Q Consensus 75 ~~~~~~~~~~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v 114 (211)
..+.. ..=.|.+.|.|+=+=+ -.++++.+++.|+..
T Consensus 84 ~glgI----DN~~Ieidg~EvPIlDGSA~~fv~~i~~aGi~~ 121 (299)
T PRK13186 84 AGLGI----DNAIIEVDGPEVPIMDGSAAPFVFLIQSAGIVE 121 (299)
T ss_pred HHCCC----CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 85787----418999688627601586699999987448450
No 176
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=25.17 E-value=51 Score=14.12 Aligned_cols=13 Identities=0% Similarity=0.286 Sum_probs=4.9
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 0789999999998
Q gi|254780202|r 64 RYNVDQLADLIEE 76 (211)
Q Consensus 64 ~~~~~~i~~~i~~ 76 (211)
+.+.+++...++.
T Consensus 103 eI~~~Di~~~~~~ 115 (420)
T PRK09472 103 EVTQEDVENVVHT 115 (420)
T ss_pred EECHHHHHHHHHH
T ss_conf 7639999999998
No 177
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=25.13 E-value=23 Score=16.46 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCEEE
Q ss_conf 105584013731599
Q gi|254780202|r 12 TLQGEGGHAGRVAVF 26 (211)
Q Consensus 12 SiQGEG~~~G~p~vF 26 (211)
++=|-|...|+|.++
T Consensus 4 ~~LGtG~s~GvP~~~ 18 (249)
T TIGR03307 4 TFLGTGGAQQVPVYG 18 (249)
T ss_pred EEEEECCCCCCCCCC
T ss_conf 999654897645789
No 178
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase; InterPro: IPR004399 Phosphomethylpyrimidine kinase (2.7.4.7 from EC), also known as HMP-phosphate kinase, catalyses the phosphorylation of HMP-P to HMP-PP in the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine during the biosynthesis of thiamine.; GO: 0008972 phosphomethylpyrimidine kinase activity, 0009228 thiamin biosynthetic process.
Probab=24.61 E-value=41 Score=14.74 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCC-EEEE------ECCCCCCCCCCHHHHHHHH
Q ss_conf 607899999999987521667873-8998------0772000035178999986
Q gi|254780202|r 63 GRYNVDQLADLIEEQWITGEKEGR-YCVL------TGGEPLLQVDVPLIQALNK 109 (211)
Q Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~~-~Vvi------TGGEPllq~l~~L~~~l~~ 109 (211)
+.+...||++.|.+.. .+|..+ .||+ ++|-+|+-. +-++.|++
T Consensus 74 GML~saeIve~Va~~l--~~y~~~~~~VvDPVMVAksG~~Ll~~--~a~~~l~~ 123 (264)
T TIGR00097 74 GMLASAEIVEAVAKKL--REYDVQIPIVVDPVMVAKSGAALLEE--EAVEALKK 123 (264)
T ss_pred CCCCCHHHHHHHHHHH--HCCCCCEEEEECCCEEECCCCCCCCH--HHHHHHHH
T ss_conf 2456707778667765--40488303897672165287546547--89999999
No 179
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=24.35 E-value=53 Score=14.02 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEEE----CCCC-CCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 660789999999998752166787389980----7720-0003517899998689879997
Q gi|254780202|r 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLT----GGEP-LLQVDVPLIQALNKRGFEIAVE 117 (211)
Q Consensus 62 ~~~~~~~~i~~~i~~~~~~~~~~~~~VviT----GGEP-llq~l~~L~~~l~~~g~~v~IE 117 (211)
..+++++++.+.+...........+.|+|| ||-- -+..+..+.+..+++|+.+|+.
T Consensus 105 ~g~l~~~~i~~~i~~~~~~h~~~~~lv~ient~e~G~v~~~~el~~i~~~a~~~gl~lH~D 165 (338)
T cd06502 105 NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLD 165 (338)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9973899999963156886466520799873128963127999999999999749726653
No 180
>pfam05161 MOFRL MOFRL family. MOFRL(multi-organism fragment with rich Leucine) family exists in bacteria and eukaryotes. The function of this domain is not clear, although it exists in some putative enzymes such as reductases and kinases.
Probab=23.92 E-value=40 Score=14.86 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.8
Q ss_pred EEEEECCCCCCC
Q ss_conf 899807720000
Q gi|254780202|r 87 YCVLTGGEPLLQ 98 (211)
Q Consensus 87 ~VviTGGEPllq 98 (211)
.+.|+||||...
T Consensus 2 ~~li~GGEtTV~ 13 (107)
T pfam05161 2 VALLSGGETTVT 13 (107)
T ss_pred EEEEECCCEEEE
T ss_conf 499977932899
No 181
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=23.82 E-value=49 Score=14.22 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=28.6
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 7873899807720000351789999868987999727888
Q gi|254780202|r 83 KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 83 ~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211)
.....|++|||-..-.....|++.+...|+.|-.=..+|+
T Consensus 286 ~~~agi~ltgg~~~~~~i~~l~~~~~~~~lpil~~~~~t~ 325 (702)
T PRK05632 286 VPIAGLLLTGGYEPDPRIAKLCEGAFETGLPILSVDTNTY 325 (702)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 9805999618989878999999864238988799568769
No 182
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=23.71 E-value=54 Score=13.93 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=44.4
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-----CC
Q ss_conf 9997689888755533332368888775752325888660789999999998752166787389980772000-----03
Q gi|254780202|r 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-----QV 99 (211)
Q Consensus 25 vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll-----q~ 99 (211)
+=|-=+=|.| .|+.|-..|.|..-. .+..++.....++.. .+...+.|+||---- +.
T Consensus 14 ISVTG~yC~l-----------nC~HCg~~~L~~Mi~----vt~~~l~k~~~el~k---kGy~g~llSGGm~srg~VPl~k 75 (275)
T COG1856 14 ISVTGAYCSL-----------NCPHCGRHYLEHMIK----VTTKSLLKRCMELEK---KGYEGCLLSGGMDSRGKVPLWK 75 (275)
T ss_pred EEEECCCEEE-----------CCHHHHHHHHHHHCC----CCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCHHH
T ss_conf 7886363575-----------381777999987525----325778889999984---5760589757868799742899
Q ss_pred CCHHHHHHHHC-CCEEEEECC
Q ss_conf 51789999868-987999727
Q gi|254780202|r 100 DVPLIQALNKR-GFEIAVETN 119 (211)
Q Consensus 100 l~~L~~~l~~~-g~~v~IETn 119 (211)
-..++++++++ |+.+.-.+.
T Consensus 76 f~d~lK~lke~~~l~inaHvG 96 (275)
T COG1856 76 FKDELKALKERTGLLINAHVG 96 (275)
T ss_pred HHHHHHHHHHHHCEEEEEEEE
T ss_conf 999999987753748999851
No 183
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=23.11 E-value=56 Score=13.86 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=11.7
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 30124477510558401373159997689888
Q gi|254780202|r 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL 34 (211)
Q Consensus 3 ~~~i~EiF~SiQGEG~~~G~p~vFiRl~GCnL 34 (211)
+|+|.+|=.+ .|+..++ |.|=|+
T Consensus 16 lFriI~i~~~-~~~~~~~--------L~G~~~ 38 (292)
T TIGR02855 16 LFRIIDIKEN-KGGDIAI--------LHGEEM 38 (292)
T ss_pred EEEEEEEEEC-CCCEEEE--------EECCEE
T ss_conf 3788877634-7850899--------863607
No 184
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.65 E-value=54 Score=13.96 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 89999999998752166787389980772
Q gi|254780202|r 66 NVDQLADLIEEQWITGEKEGRYCVLTGGE 94 (211)
Q Consensus 66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGE 94 (211)
+.++|.+.+..+. .. ...|++|||=
T Consensus 46 ~~~~I~~~l~~a~---~r-~D~vI~tGGL 70 (255)
T COG1058 46 NPDRIVEALREAS---ER-ADVVITTGGL 70 (255)
T ss_pred CHHHHHHHHHHHH---HC-CCEEEECCCC
T ss_conf 9999999999997---18-9989987985
No 185
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=21.31 E-value=60 Score=13.62 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCCCCCEEEEECCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE--EE
Q ss_conf 013731599976898887-----55533332368888775752325888660789999999998752166787389--98
Q gi|254780202|r 18 GHAGRVAVFCRFSGCNLW-----SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--VL 90 (211)
Q Consensus 18 ~~~G~p~vFiRl~GCnL~-----c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~V--vi 90 (211)
+.+|+.++|=||.|=..- -+-.-++....|.|++..|.-.++.. -..+.+.+...|.+........+..| |+
T Consensus 288 PNVGKSTLFNRL~g~r~AIV~d~pGvTRDR~~~~~~~~~~~F~lvDTGG-~~~~~~~~~~~I~~Q~~~Ai~eADlIlFVV 366 (714)
T PRK09518 288 PNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGRDFKLVDTGG-WEADAEGIEAAIASQAEIAMTLADAIVFVV 366 (714)
T ss_pred CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 9876899998862884168469899883755579999991699997999-998832699999999999999689999999
Q ss_pred ECCCCCCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 077200003517899998689879997
Q gi|254780202|r 91 TGGEPLLQVDVPLIQALNKRGFEIAVE 117 (211)
Q Consensus 91 TGGEPllq~l~~L~~~l~~~g~~v~IE 117 (211)
-|=+-+......+.+.|++.|-+|.+=
T Consensus 367 D~~~Glt~~D~~ia~~LRk~~Kpvilv 393 (714)
T PRK09518 367 DGQVGMTSTDEVIARMLQRAGKPVVLV 393 (714)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 689798978999999998569988999
No 186
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=21.12 E-value=30 Score=15.66 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCEEE
Q ss_conf 105584013731599
Q gi|254780202|r 12 TLQGEGGHAGRVAVF 26 (211)
Q Consensus 12 SiQGEG~~~G~p~vF 26 (211)
++=|-|...|+|+++
T Consensus 4 ~~LGtG~s~GvP~~~ 18 (250)
T PRK11244 4 TLLGTGGAQGVPVYG 18 (250)
T ss_pred EEEEECCCCCCCCCC
T ss_conf 999735898624789
No 187
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=21.10 E-value=61 Score=13.59 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=24.9
Q ss_pred CCCEEEEE-ECCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 30124477-510558401373159997689888
Q gi|254780202|r 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNL 34 (211)
Q Consensus 3 ~~~i~EiF-~SiQGEG~~~G~p~vFiRl~GCnL 34 (211)
.|.|.|+. +...|||.|. .+.||=.|+|=
T Consensus 9 DF~V~E~~~~~~~g~Geh~---~~~i~K~g~~T 38 (319)
T cd02577 9 DFIVEEITPFDIGKKGKYL---IYLLEKKNWDT 38 (319)
T ss_pred CCEEEEECCCCCCCCCCEE---EEEEEECCCCH
T ss_conf 7479974588979987889---99999889999
No 188
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=21.05 E-value=61 Score=13.59 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf 866078999999999875216678738998077200003-51789999868987999
Q gi|254780202|r 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211)
Q Consensus 61 ~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211)
+.-.++++|+.+.+.+....+. ..+=+--|.|.+|- +.+=++.|.+.|+...+
T Consensus 55 nSa~~tLeeIi~~m~~a~~~Gk---~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yev 108 (254)
T COG2875 55 NSASLTLEEIIDLMVDAVREGK---DVVRLHSGDPSIYGALAEQMRELEALGIPYEV 108 (254)
T ss_pred ECCCCCHHHHHHHHHHHHHCCC---EEEEEECCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 2476889999999999997588---08996269906888999999999976998599
No 189
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=20.87 E-value=62 Score=13.56 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCC-CEEEEECCC
Q ss_conf 66078999999999875216678738998077200003517899998689-879997278
Q gi|254780202|r 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-FEIAVETNG 120 (211)
Q Consensus 62 ~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g-~~v~IETnG 120 (211)
.+.++.+.++++++. +.+...||-.|| |--..|.+.|.+.| .+| |=||.
T Consensus 632 FEplt~E~Vm~I~e~-----E~~~GVIVq~GG----Qtp~nlA~~L~~~GG~~i-LGTS~ 681 (1089)
T TIGR01369 632 FEPLTFEDVMNIIEL-----EKPEGVIVQFGG----QTPLNLAKELEEAGGVPI-LGTSP 681 (1089)
T ss_pred CCCCCCCCCEEHEEE-----CCCCEEEEECCC----HHHHHHHHHHHHCCCCEE-ECCCH
T ss_conf 876350310011000-----586679997487----326789999997089317-36885
No 190
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=20.82 E-value=62 Score=13.55 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCCCCEEEEECC---CCC---CC--C-----C-CHHHHHHHHCCCEEEEECCC-C
Q ss_conf 886607899999999987521---6678738998077---200---00--3-----5-17899998689879997278-8
Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWIT---GEKEGRYCVLTGG---EPL---LQ--V-----D-VPLIQALNKRGFEIAVETNG-T 121 (211)
Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~---~~~~~~~VviTGG---EPl---lq--~-----l-~~L~~~l~~~g~~v~IETnG-t 121 (211)
..|+...+++|+..++++... .....+.|+||+| ||+ .+ + + ..|.+++..+|-+|.+=+.= .
T Consensus 229 G~GRl~ep~~Iv~~i~~~l~~~~~~~L~GkkVLITAGpT~E~IDPVR~IsN~SSGKmG~aiA~aa~~rGA~VtLIsGp~~ 308 (476)
T PRK13982 229 GVGRMAEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 308 (476)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 77889999999999999872145555679889996688712226745577668519999999999967997999956677
Q ss_pred CCCCCCCEEE
Q ss_conf 8667885079
Q gi|254780202|r 122 IEPPQGIDWI 131 (211)
Q Consensus 122 ~~~~~~~d~i 131 (211)
++++..++.+
T Consensus 309 l~~P~gv~~i 318 (476)
T PRK13982 309 LRDPQGVKVI 318 (476)
T ss_pred CCCCCCCEEE
T ss_conf 7789984699
No 191
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=20.59 E-value=62 Score=13.52 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEE-EECCCCCCC-CCCHHHHHHHHCCCEEEE
Q ss_conf 86607899999999987521667873899-807720000-351789999868987999
Q gi|254780202|r 61 KGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ-VDVPLIQALNKRGFEIAV 116 (211)
Q Consensus 61 ~~~~~~~~~i~~~i~~~~~~~~~~~~~Vv-iTGGEPllq-~l~~L~~~l~~~g~~v~I 116 (211)
+.-.|+++|+.+.+.+... ..+.|+ +==|.|.+| .+.+=++.|.+.|+...|
T Consensus 51 ~sA~m~L~ei~~~m~~a~~----~GK~VvRLHsGDPsIYGA~~EQ~~~L~~~gI~~e~ 104 (252)
T TIGR01465 51 NSAAMSLEEIVDIMVDAVR----EGKLVVRLHSGDPSIYGAIAEQMQLLEALGIPYEV 104 (252)
T ss_pred ECCCCCHHHHHHHHHHHHH----CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 0502698899999999986----69849998508755776699999999867897798
No 192
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=20.49 E-value=42 Score=14.70 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHH----CC-CCCCCEEEEECCCCCC--CCCCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 89999999998752----16-6787389980772000--035178999986898799972788866
Q gi|254780202|r 66 NVDQLADLIEEQWI----TG-EKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEP 124 (211)
Q Consensus 66 ~~~~i~~~i~~~~~----~~-~~~~~~VviTGGEPll--q~l~~L~~~l~~~g~~v~IETnGt~~~ 124 (211)
.+++++..|.+-.. .. .|..=.|-| =|=| +++...++.+.+.+..=-|=||-|+.=
T Consensus 200 ~~~~LL~~~k~~~~~L~~~~~KY~P~~VKI---APDL~~~dl~~IAd~~v~~~~dG~IATNTT~sR 262 (370)
T TIGR01036 200 SLRDLLTAVKEETDGLRRVHRKYVPVLVKI---APDLSESDLLDIADSAVELGIDGIIATNTTVSR 262 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEEECCEECC
T ss_conf 589999999999999998612788578972---689882138999999987189848984451025
No 193
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=20.13 E-value=64 Score=13.46 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--C----CCHHHHHHHHCCCEEEEECCCCCCC--CCCCEEEEECCC
Q ss_conf 7899999999987521667873899807720000--3----5178999986898799972788866--788507984167
Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V----DVPLIQALNKRGFEIAVETNGTIEP--PQGIDWICVSPK 136 (211)
Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq--~----l~~L~~~l~~~g~~v~IETnGt~~~--~~~~d~it~SPK 136 (211)
+..+++...|...... .--+||=+|.|= | ....++..++.||+|=. .= ..-.||-
T Consensus 78 l~~E~ikkd~~~a~~~------i~~~~g~~p~LlRpP~G~fn~~~~~~ae~~GY~~V~------WsWHvdS~DWk----- 140 (198)
T TIGR02764 78 LEDEKIKKDLLRAQEI------IEKLTGKKPTLLRPPNGAFNKAVLKLAESLGYTVVH------WSWHVDSLDWK----- 140 (198)
T ss_pred CCHHHHHHHHHHHHHH------HHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE------EECCCCCCCCC-----
T ss_conf 8764899999998888------865105550165688986046899999973991898------62455883545-----
Q ss_pred CCCCCCCCCHH-HHHHHHHHCCCCHHHHCCCCCCEEEECC-CCC--CCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 77410012123-5666530127685785377857799824-884--24688899999999967897797
Q gi|254780202|r 137 AGCDLKIKGGQ-ELKLVFPQVNVSPENYIGFDFERFSLQP-MDG--PFLEENTNLAISYCFQNPKWRLS 201 (211)
Q Consensus 137 ~~~~~~~~~~~-ElK~V~~~~~~~~~~~~~~~~~~~~LqP-~~~--~~~~~~~~~~i~~~~~~~~~Rls 201 (211)
.+..+ +++-|+.... .=-+.|+- .+. +.-.++++.++.-+++. ++||.
T Consensus 141 ------NPG~e~iv~~V~~~~~----------~GdIiL~HDASd~~KqT~~ALp~Ii~~LK~~-GY~fv 192 (198)
T TIGR02764 141 ------NPGVESIVDRVVKNTK----------PGDIILLHDASDSAKQTVKALPEIIKKLKEK-GYEFV 192 (198)
T ss_pred ------CCCEEHHHHHHHCCCC----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEE
T ss_conf ------7861000111331279----------9856987634879744177899998998754-95343
Done!