HHsearch alignment for GI: 254780202 and conserved domain: pfam04055
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=98.37 E-value=3.1e-06 Score=63.05 Aligned_cols=98 Identities=34% Similarity=0.540 Sum_probs=66.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHH
Q ss_conf 768988875553333236888877575232588866078999999999875216678738998077200003-5178999
Q gi|254780202|r 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQA 106 (211)
Q Consensus 28 Rl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~ 106 (211)
T Consensus 3 ~~~gC~~-----------~C~fC~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~~~~~i~~~gg~p~~~~~~~~~~~~ 67 (165)
T pfam04055 3 ITPGCNL-----------RCTYCAFPSI-RARGKGRELSPEEILEEAKELAR---LGVEVVILTGGEPLLLPDLVELLER 67 (165)
T ss_pred ECCCCCC-----------CCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 8937487-----------7968999785-78886522699999999988874---5985999931676665277777888
Q ss_pred HHH----CCCEEEEECCCCCCCC--------CCCEEEEECCCCCCC
Q ss_conf 986----8987999727888667--------885079841677741
Q gi|254780202|r 107 LNK----RGFEIAVETNGTIEPP--------QGIDWICVSPKAGCD 140 (211)
Q Consensus 107 l~~----~g~~v~IETnGt~~~~--------~~~d~it~SPK~~~~ 140 (211)
T Consensus 68 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~ 113 (165)
T pfam04055 68 LLKLEELEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDD 113 (165)
T ss_pred HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 7653146764899998514331045689997198522246355999