HHsearch alignment for GI: 254780202 and conserved domain: smart00729
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=94.89 E-value=0.25 Score=29.84 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=51.4
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCC---
Q ss_conf 99976898887555333323688887757523258886607899999999987521667--8738998077200003---
Q gi|254780202|r 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQV--- 99 (211)
Q Consensus 25 vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~VviTGGEPllq~--- 99 (211)
T Consensus 4 ~~~~sRGC~~-----------~C~fC~~~~~~--~-~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (216)
T smart00729 4 LYIITRGCPR-----------RCTFCSFPSAR--G-KLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQ 69 (216)
T ss_pred EEEEECCCCC-----------CCCCCCCCCCC--C-CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH
T ss_conf 9999878198-----------48429817588--9-64575999999999999970897653001100246898889999
Q ss_pred CCHHHHHHHHC-----CCEEEEECCCC
Q ss_conf 51789999868-----98799972788
Q gi|254780202|r 100 DVPLIQALNKR-----GFEIAVETNGT 121 (211)
Q Consensus 100 l~~L~~~l~~~-----g~~v~IETnGt 121 (211)
T Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (216)
T smart00729 70 LEELLEAIREILGLADDVEITIETRPG 96 (216)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 999999999851435626999970602