HHsearch alignment for GI: 254780202 and conserved domain: smart00729

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=94.89  E-value=0.25  Score=29.84  Aligned_cols=83  Identities=28%  Similarity=0.375  Sum_probs=51.4

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCC---
Q ss_conf             99976898887555333323688887757523258886607899999999987521667--8738998077200003---
Q gi|254780202|r   25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQV---   99 (211)
Q Consensus        25 vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~VviTGGEPllq~---   99 (211)
T Consensus         4 ~~~~sRGC~~-----------~C~fC~~~~~~--~-~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (216)
T smart00729        4 LYIITRGCPR-----------RCTFCSFPSAR--G-KLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQ   69 (216)
T ss_pred             EEEEECCCCC-----------CCCCCCCCCCC--C-CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH
T ss_conf             9999878198-----------48429817588--9-64575999999999999970897653001100246898889999


Q ss_pred             CCHHHHHHHHC-----CCEEEEECCCC
Q ss_conf             51789999868-----98799972788
Q gi|254780202|r  100 DVPLIQALNKR-----GFEIAVETNGT  121 (211)
Q Consensus       100 l~~L~~~l~~~-----g~~v~IETnGt  121 (211)
T Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~~~   96 (216)
T smart00729       70 LEELLEAIREILGLADDVEITIETRPG   96 (216)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             999999999851435626999970602