Query         gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 211
No_of_seqs    111 out of 1224
Neff          7.0 
Searched_HMMs 33803
Date          Mon May 23 13:27:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780202.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3c8f_A Pyruvate formate-lyase  99.5   2E-12 5.9E-17  104.6  13.9  123    5-139     1-134 (245)
  2 >1tv8_A MOAA, molybdenum cofac  99.0 2.1E-08 6.2E-13   77.3  12.4  101   25-139    16-131 (313)
  3 >2z2u_A UPF0026 protein MJ0257  98.8 6.9E-08   2E-12   73.8  10.9   53   84-136   128-184 (311)
  4 >2yx0_A Radical SAM enzyme; pr  98.6 1.2E-06 3.6E-11   65.4  12.7  108   21-139    69-206 (342)
  5 >3can_A Pyruvate-formate lyase  98.5 4.4E-07 1.3E-11   68.4   8.2   57   84-140     3-67  (182)
  6 >2a5h_A L-lysine 2,3-aminomuta  98.3 5.2E-06 1.5E-10   61.1   8.9   79   29-122    28-111 (248)
  7 >3iix_A Biotin synthetase, put  98.2 1.9E-05 5.8E-10   57.2  10.8  101   23-140    53-165 (348)
  8 >1r30_A Biotin synthase; SAM r  98.2 1.3E-05 3.7E-10   58.5   8.5  102   22-137    65-179 (369)
  9 >1olt_A Oxygen-independent cop  97.4  0.0083 2.5E-07   39.4  12.3  111   19-140    49-176 (364)
 10 >2qgq_A Protein TM_1862; alpha  95.6   0.038 1.1E-06   34.9   6.3   78   22-116     3-89  (112)
 11 >1rf6_A 5-enolpyruvylshikimate  82.3     2.9 8.6E-05   22.1   5.0   40   84-123    26-66  (141)
 12 >2pqc_A 3-phosphoshikimate 1-c  77.7     3.6 0.00011   21.5   4.3   40   85-124    27-67  (146)
 13 >2qbu_A Precorrin-2 methyltran  68.1       9 0.00026   18.8   5.0   47   67-116    80-127 (131)
 14 >3kwp_A Predicted methyltransf  65.8     7.9 0.00023   19.2   3.8   48   66-116    74-122 (125)
 15 >2jvm_A Uncharacterized protei  65.4     3.4  0.0001   21.7   1.8   35   11-56     29-65  (80)
 16 >3f8d_A Thioredoxin reductase   65.1     2.4 7.2E-05   22.6   1.0   32   85-116    45-76  (114)
 17 >1wde_A Probable diphthine syn  62.9      11 0.00033   18.2   4.9   35   82-116    81-116 (120)
 18 >1wyz_A Putative S-adenosylmet  62.0      12 0.00034   18.0   5.2   50   64-116    67-117 (120)
 19 >3hh1_A Tetrapyrrole methylase  61.8      12 0.00034   18.0   6.1   51   64-117    62-114 (117)
 20 >2e0n_A Precorrin-2 C20-methyl  61.7     8.2 0.00024   19.1   3.2   34   84-117    96-130 (133)
 21 >1s4d_A Uroporphyrin-III C-met  61.5      12 0.00035   18.0   6.3   50   64-116    75-125 (130)
 22 >1cbf_A Cobalt-precorrin-4 tra  60.8      12 0.00036   17.9   5.3   49   65-116    77-126 (130)
 23 >1va0_A Uroporphyrin-III C-met  60.7      12 0.00036   17.9   4.3   35   84-118    75-110 (120)
 24 >2e7z_A Acetylene hydratase AH  58.6      13 0.00039   17.7   4.2   55   64-121    96-152 (166)
 25 >2z6r_A Diphthine synthase; me  57.9      14  0.0004   17.6   5.6   36   83-118    76-112 (122)
 26 >1ve2_A Uroporphyrin-III C-met  57.9      14  0.0004   17.6   5.3   50   64-116    61-111 (115)
 27 >1pjq_A CYSG, siroheme synthas  55.8     7.2 0.00021   19.5   2.1   33   84-116    81-114 (118)
 28 >1vhv_A Diphthine synthase; st  53.6      14 0.00041   17.5   3.3   34   84-117    87-121 (132)
 29 >3c6f_A YETF protein; uncharac  53.5     7.5 0.00022   19.3   1.9   42   85-126    15-70  (81)
 30 >2npn_A Putative cobalamin syn  53.5      16 0.00047   17.1   5.4   46   68-116    89-138 (142)
 31 >3etc_A AMP-binding protein; a  51.8      15 0.00045   17.2   3.2   50   62-114   132-201 (233)
 32 >3gl5_A Putative DSBA oxidored  50.9      17 0.00051   16.8   4.2   68   40-107     6-93  (106)
 33 >3c6f_A YETF protein; uncharac  49.5      18 0.00053   16.8   3.3   42   84-125     9-64  (72)
 34 >2jrr_A Uncharacterized protei  49.5     5.5 0.00016   20.2   0.7   36   12-57     17-53  (67)
 35 >2r48_A Phosphotransferase sys  43.0      14  0.0004   17.6   1.9   24  102-125    24-47  (106)
 36 >3fbs_A Oxidoreductase; struct  42.6      14 0.00041   17.5   1.9   63   45-114     9-71  (101)
 37 >2p9b_A Possible prolidase; pr  41.9      24  0.0007   15.9   5.1   59   65-124    18-89  (175)
 38 >2jz8_A Uncharacterized protei  41.7      14 0.00042   17.5   1.8   28   21-58     35-62  (87)
 39 >1pg5_B Aspartate carbamoyltra  39.7      18 0.00053   16.8   2.0   11   44-54     37-47  (62)
 40 >2zvb_A Precorrin-3 C17-methyl  39.6      26 0.00076   15.7   3.1   47   66-115    59-106 (131)
 41 >2w19_A 3-deoxy-D-arabino-hept  38.9      26 0.00078   15.6   4.5   54   60-114   316-371 (472)
 42 >1njh_A Protein YOJF; structur  38.8      12 0.00034   18.1   1.0   26  100-125    12-38  (119)
 43 >1zjj_A Hypothetical protein P  37.1      21 0.00061   16.4   2.0   32   90-122    13-44  (131)
 44 >2hx1_A Predicted sugar phosph  36.7      19 0.00055   16.6   1.8   31   91-122    27-57  (162)
 45 >2yvw_A UDP-N-acetylglucosamin  36.2      29 0.00086   15.3   3.6   36   86-121    87-123 (208)
 46 >2qs8_A XAA-Pro dipeptidase; a  34.1      31 0.00092   15.1   5.2   58   65-123    15-83  (119)
 47 >1vjr_A 4-nitrophenylphosphata  33.3      32 0.00095   15.0   4.1   34   88-122    27-60  (145)
 48 >2r4q_A Phosphotransferase sys  33.2      20  0.0006   16.4   1.5   24  101-124    23-46  (106)
 49 >2zxe_B Na+,K+-ATPase beta sub  33.0      15 0.00046   17.2   0.8   10  128-137   141-150 (236)
 50 >2fi1_A Hydrolase, haloacid de  32.7      33 0.00097   15.0   3.2   36   87-123     9-44  (124)
 51 >1g6s_A EPSP synthase; two-dom  32.6      33 0.00097   15.0   5.1   40   83-122    88-128 (223)
 52 >1w5d_A Penicillin-binding pro  32.6      33 0.00098   15.0   2.7   30   84-113    20-51  (125)
 53 >3a3d_A PBP4, penicillin-bindi  32.1      34 0.00099   14.9   2.6   30   84-113    20-51  (121)
 54 >2yvw_A UDP-N-acetylglucosamin  31.9      20  0.0006   16.4   1.3   31   90-120    25-60  (68)
 55 >3llv_A Exopolyphosphatase-rel  31.6      34   0.001   14.9   2.9   33   84-119     5-38  (141)
 56 >3feq_A Putative amidohydrolas  31.4      35   0.001   14.8   4.7   58   65-123    36-104 (140)
 57 >1w79_A D-alanyl-D-alanine car  30.7      35   0.001   14.8   2.6   29   85-113    21-51  (129)
 58 >3d6j_A Putative haloacid deha  30.6      36  0.0011   14.7   2.4   25   99-123    28-52  (160)
 59 >2ho4_A Haloacid dehalogenase-  30.4      36  0.0011   14.7   3.0   22  101-122    29-50  (140)
 60 >3i4t_A Diphthine synthase; ni  29.4      37  0.0011   14.6   3.0   33   84-116    95-128 (140)
 61 >1x3l_A Hypothetical protein P  29.3      37  0.0011   14.6   3.3   41   83-123    74-128 (196)
 62 >2v7b_A Benzoate-coenzyme A li  29.3      37  0.0011   14.6   3.3   50   63-115   104-174 (221)
 63 >2ex2_A Penicillin-binding pro  28.6      38  0.0011   14.6   2.2   28   86-113    22-51  (123)
 64 >1ad3_A ALDH, aldehyde dehydro  28.3      39  0.0011   14.5   5.2   35   86-123   181-215 (270)
 65 >2wm8_A MDP-1, magnesium-depen  27.5      39  0.0012   14.5   2.1   45   99-143    46-101 (161)
 66 >2yrk_A Zinc finger homeobox p  26.9      30 0.00089   15.3   1.5   13   45-57     14-26  (55)
 67 >1qyi_A ZR25, hypothetical pro  26.7      41  0.0012   14.3   3.2   24  100-123    26-49  (190)
 68 >2o0b_A 3-phosphoshikimate 1-c  26.4      42  0.0012   14.3   3.6   38   84-121    89-127 (220)
 69 >1kqf_A FDH-N, formate dehydro  26.3      42  0.0012   14.3   3.7   33   85-117   219-253 (374)
 70 >1vzy_A 33 kDa chaperonin; cha  26.3      29 0.00085   15.4   1.3   24   44-76     28-51  (54)
 71 >3epr_A Hydrolase, haloacid de  25.8      21 0.00062   16.3   0.5   21  101-121    27-47  (154)
 72 >2b8n_A Glycerate kinase, puta  25.6      43  0.0013   14.2   3.3   42   83-124    86-141 (202)
 73 >2obb_A Hypothetical protein;   25.4      44  0.0013   14.1   2.9   27   84-112    40-66  (142)
 74 >1uqw_A Putative binding prote  24.9      45  0.0013   14.1   5.3   60   60-120   199-259 (387)
 75 >3ddh_A Putative haloacid deha  24.6      45  0.0013   14.0   2.5   61   87-147    10-83  (149)
 76 >3bul_A Methionine synthase; t  24.3      24 0.00071   15.9   0.6   82    9-120     8-92  (157)
 77 >2yww_A Aspartate carbamoyltra  24.2      20  0.0006   16.4   0.2   13   44-56     36-48  (52)
 78 >2a87_A TRXR, TR, thioredoxin   24.0      46  0.0014   14.0   2.9   33   87-123    24-56  (114)
 79 >2fiy_A Protein FDHE homolog;   23.4      47  0.0014   13.9   2.3   35   13-53     42-76  (154)
 80 >2vpz_A Thiosulfate reductase;  23.3      48  0.0014   13.9   3.8   55   65-122   111-167 (180)
 81 >3iru_A Phoshonoacetaldehyde h  22.7      49  0.0014   13.8   3.1   27   96-122    25-52  (172)
 82 >1v25_A Long-chain-fatty-acid-  22.6      49  0.0015   13.8   4.6   31   87-120   149-184 (215)
 83 >2air_B Aspartate carbamoyltra  22.1      19 0.00055   16.7  -0.4   12   44-55     42-53  (60)
 84 >2oyc_A PLP phosphatase, pyrid  21.9      51  0.0015   13.7   3.1   59   63-123     7-65  (166)
 85 >2hi0_A Putative phosphoglycol  21.7      51  0.0015   13.7   2.5   32   91-122    18-49  (152)
 86 >2c4n_A Protein NAGD; nucleoti  21.5      44  0.0013   14.1   1.4   31   91-122    16-46  (144)
 87 >2om6_A Probable phosphoserine  21.4      52  0.0015   13.6   4.8   36   87-122     6-41  (150)
 88 >2h7a_A Hypothetical protein Y  21.2      44  0.0013   14.1   1.4   30   87-116    56-86  (110)
 89 >2be7_D Aspartate carbamoyltra  21.1      20 0.00059   16.5  -0.4   12   44-55     36-47  (55)
 90 >2elp_A Zinc finger protein 40  21.0      26 0.00076   15.7   0.2   11   44-54      9-19  (37)
 91 >1vq0_A 33 kDa chaperonin; TM1  20.7      54  0.0016   13.5   2.0   27   43-78     27-53  (58)
 92 >2zg6_A Putative uncharacteriz  20.6      54  0.0016   13.5   2.6   23  101-123    15-37  (134)
 93 >3i28_A Epoxide hydrolase 2; a  20.5      54  0.0016   13.5   3.3   33   91-123    11-44  (143)
 94 >2zos_A MPGP, mannosyl-3-phosp  20.4      54  0.0016   13.5   2.3   44   63-115    22-72  (84)
 95 >3gnh_A L-lysine, L-arginine c  20.3      55  0.0016   13.5   5.9   57   65-122    13-80  (118)
 96 >1th5_A NIFU1; iron-sulfur clu  20.2      55  0.0016   13.5   2.1   31    8-52     15-51  (74)

No 1  
>>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:)
Probab=99.47  E-value=2e-12  Score=104.64  Aligned_cols=123  Identities=21%  Similarity=0.302  Sum_probs=97.8

Q ss_pred             CEEEEEECCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             1244775105584013731599976-898887555333323688887757523258886607899999999987521667
Q gi|254780202|r    5 SIKEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK   83 (211)
Q Consensus         5 ~i~EiF~SiQGEG~~~G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~   83 (211)
                      ||.|+|+++|+++.+.|.+.+++.+ .|||+           +|.||++...+ .......++.+++...++++......
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~i~~t~~Cn~-----------~C~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (245)
T 3c8f_A            1 SVIGRIHSFESCGTVDGPGIRFITFFQGCLM-----------RCLYCHNRDTW-DTHGGKEVTVEDLMKEVVTYRHFMNA   68 (245)
T ss_dssp             CCCEEEEEEEEEECTTSSSEEEEEEESCCSC-----------CCTTCSCGGGC-CTTCSEEECHHHHHHHHGGGHHHHTS
T ss_pred             CCEEEEEEEEEEEEEECCCCEEEEECCCCCC-----------CCCCCCCHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             9258984789940682797289998689688-----------79899980331-86799178899999999999998515


Q ss_pred             CCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCCCCC--------CCEEEEECCCCCC
Q ss_conf             8738998077200003--517899998689879997278886678--------8507984167774
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVSPKAGC  139 (211)
Q Consensus        84 ~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~~~~--------~~d~it~SPK~~~  139 (211)
                      ....+.++||||+++.  +..|.+.+++.|..+.+.|||+.....        ..+.+.+|-....
T Consensus        69 ~~~~~~~~gGep~l~~~~~~~l~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~  134 (245)
T 3c8f_A           69 SGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMN  134 (245)
T ss_dssp             TTCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSS
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             886687156774426789999999988635714661377311445556542133210114500100


No 2  
>>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313)
Probab=98.96  E-value=2.1e-08  Score=77.34  Aligned_cols=101  Identities=27%  Similarity=0.296  Sum_probs=67.4

Q ss_pred             EEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf             9997-689888755533332368888775752325----88866078999999999875216678738998077200003
Q gi|254780202|r   25 VFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV   99 (211)
Q Consensus        25 vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~   99 (211)
                      ++|- ..|||+           +|.||........    ......++.+++.+.+.+...   .....|.++||||++++
T Consensus        16 ~~i~~t~~Cn~-----------~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~GGEP~l~~   81 (313)
T 1tv8_A           16 LRLSVTDRCNF-----------RCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE---LGVKKIRITGGEPLMRR   81 (313)
T ss_dssp             EEEECCSCCSC-----------CCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH---TTCCEEEEESSCGGGST
T ss_pred             EEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCCCCCCC
T ss_conf             79984240178-----------79688975006777765761035899999999999997---69819974798400261


Q ss_pred             -CCHHHHHHHHCC-C-EEEEECCCCCC-------CCCCCEEEEECCCCCC
Q ss_conf             -517899998689-8-79997278886-------6788507984167774
Q gi|254780202|r  100 -DVPLIQALNKRG-F-EIAVETNGTIE-------PPQGIDWICVSPKAGC  139 (211)
Q Consensus       100 -l~~L~~~l~~~g-~-~v~IETnGt~~-------~~~~~d~it~SPK~~~  139 (211)
                       +.+++..+++.+ . .+.+.|||...       .....+.+.+|.....
T Consensus        82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~isi~~~~  131 (313)
T 1tv8_A           82 DLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAID  131 (313)
T ss_dssp             THHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSS
T ss_pred             HHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCC
T ss_conf             06999998640254431001333123406899999839998872255788


No 3  
>>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:)
Probab=98.81  E-value=6.9e-08  Score=73.85  Aligned_cols=53  Identities=25%  Similarity=0.293  Sum_probs=38.5

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCC---CCCCCEEEEECCC
Q ss_conf             8738998077200003-517899998689879997278886---6788507984167
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE---PPQGIDWICVSPK  136 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~---~~~~~d~it~SPK  136 (211)
                      ....+.++||||++++ +.+++..+++.|+.+.|.|||+..   ....++.+.+|-.
T Consensus       128 ~~~~~~~~GGepll~~~~~~~~~~~~~~~~~~~i~TNG~~~~~~~~~~l~~~~is~~  184 (311)
T 2z2u_A          128 PKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIEPTQLYISLD  184 (311)
T ss_dssp             CCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHCCCSEEEEECC
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHEEECCCCCHHHHHHCCCCEEEEEEC
T ss_conf             757998158874100279999999863030210000554236776236616898735


No 4  
>>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:)
Probab=98.63  E-value=1.2e-06  Score=65.38  Aligned_cols=108  Identities=20%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCC----------------
Q ss_conf             731599976-89888755533332368888775752325--88866078999999999875216----------------
Q gi|254780202|r   21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQWITG----------------   81 (211)
Q Consensus        21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~--~~~~~~~~~~~i~~~i~~~~~~~----------------   81 (211)
                      +...+++-+ .|||+           +|.||.....+..  .......+.+++.+.+.++....                
T Consensus        69 ~~~~~~i~~t~gCn~-----------~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (342)
T 2yx0_A           69 HRCLQMTPVLAWCTH-----------NCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFE  137 (342)
T ss_dssp             GGEEEEESCSSCCSB-----------CCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHH
T ss_pred             CCEEEEEECCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             444887684125277-----------798899988777775554555798999999999999987653267530267777


Q ss_pred             --CCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCC--------CCCCCEEEEECCCCCC
Q ss_conf             --678738998077200003-517899998689879997278886--------6788507984167774
Q gi|254780202|r   82 --EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE--------PPQGIDWICVSPKAGC  139 (211)
Q Consensus        82 --~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~--------~~~~~d~it~SPK~~~  139 (211)
                        ......+..+||||++++ +..+++.++..|..+.+.|||+..        .....|++.+|-....
T Consensus       138 ~~~~~~~~~~~~~gep~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~~~~~~~~~v~isl~~~~  206 (342)
T 2yx0_A          138 EAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPD  206 (342)
T ss_dssp             HHTSCCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSS
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             514875799946877545440999999998639728995488772589998864257757996278999


No 5  
>>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=98.54  E-value=4.4e-07  Score=68.37  Aligned_cols=57  Identities=21%  Similarity=0.340  Sum_probs=46.7

Q ss_pred             CCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCC------CCCCCEEEEECCCCCCC
Q ss_conf             8738998077200003--517899998689879997278886------67885079841677741
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE------PPQGIDWICVSPKAGCD  140 (211)
Q Consensus        84 ~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~------~~~~~d~it~SPK~~~~  140 (211)
                      +.+.|+|||||||+++  +..+++.+++.|+++.+.|||+.+      .....|++.+|-+...+
T Consensus         3 g~~~v~~tGGEPll~~d~i~~i~~~~~~~g~~~~l~Tng~~~~~~~~~~~~~~~~i~isld~~~~   67 (182)
T 3can_A            3 AGGGVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVXRNCELLLIDLKSXDS   67 (182)
T ss_dssp             -CCCEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCH
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHCCCCCCCHH
T ss_conf             99848997133308988999999999877992999725211077777665200000243220038


No 6  
>>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342)
Probab=98.30  E-value=5.2e-06  Score=61.11  Aligned_cols=79  Identities=18%  Similarity=0.323  Sum_probs=55.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC---CCHHHH
Q ss_conf             68988875553333236888877575232588866078999999999875216678738998077200003---517899
Q gi|254780202|r   29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQ  105 (211)
Q Consensus        29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~---l~~L~~  105 (211)
                      ..|||+           +|.||.+.+.  .+......+.+++.+.+..+..  ..+.+.|++|||||++++   +.+++.
T Consensus        28 T~~Cn~-----------~C~~C~~~~~--~~~~~~~~~~e~i~~~~~~~~~--~~~~~~i~~~ggep~~~~~~~~~~~~~   92 (248)
T 2a5h_A           28 TDXCSX-----------YCRHCTRRRF--AGQSDDSXPXERIDKAIDYIRN--TPQVRDVLLSGGDALLVSDETLEYIIA   92 (248)
T ss_dssp             ESCCSS-----------CCTTCTTTTT--TTSSSSBCCHHHHHHHHHHHHT--CTTCCEEEEEESCTTSSCHHHHHHHHH
T ss_pred             CCCCCE-----------ECCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             143010-----------0451254233--5763342149999999999983--898369998569856268899999999


Q ss_pred             HHHHCCCE--EEEECCCCC
Q ss_conf             99868987--999727888
Q gi|254780202|r  106 ALNKRGFE--IAVETNGTI  122 (211)
Q Consensus       106 ~l~~~g~~--v~IETnGt~  122 (211)
                      .+++.+..  +.+.|++..
T Consensus        93 ~l~~~~~~~~~~~~~~~~~  111 (248)
T 2a5h_A           93 KLREIPHVEIVRIGSRTPV  111 (248)
T ss_dssp             HHHTSTTCCEEEEECSHHH
T ss_pred             HHHHCCCCCEEEEEECCCC
T ss_conf             9970899754888705542


No 7  
>>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:)
Probab=98.24  E-value=1.9e-05  Score=57.23  Aligned_cols=101  Identities=15%  Similarity=0.208  Sum_probs=67.1

Q ss_pred             CEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-
Q ss_conf             159997-689888755533332368888775752325888660789999999998752166787389980772000035-
Q gi|254780202|r   23 VAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-  100 (211)
Q Consensus        23 p~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l-  100 (211)
                      +.++|- ..|||+           +|.||...... .......++++++++.++.+..   .....+.++||||++.+. 
T Consensus        53 ~~~~i~~t~gC~~-----------~C~fC~~~~~~-~~~~~~~~~~e~i~~~i~~~~~---~g~~~~~~~~g~p~~~~~~  117 (348)
T 3iix_A           53 IRAIIEFSNVCRK-----------NCLYCGLRRDN-KNLKRYRMTPEEIVERARLAVQ---FGAKTIVLQSGEDPYXMPD  117 (348)
T ss_dssp             EEEEEEEECCCSC-----------CCTTCTTCTTC-CSSCCCBCCHHHHHHHHHHHHH---TTCSEEEEEESCCGGGTTH
T ss_pred             EEEEEEECCCCCC-----------CCCCCCCCCCC-CCCCCEECCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHH
T ss_conf             9999987788699-----------89579986668-9865231457889999999997---1882565402652345278


Q ss_pred             --CHHHHHHHHCCCEEEEECCCCCCC--------CCCCEEEEECCCCCCC
Q ss_conf             --178999986898799972788866--------7885079841677741
Q gi|254780202|r  101 --VPLIQALNKRGFEIAVETNGTIEP--------PQGIDWICVSPKAGCD  140 (211)
Q Consensus       101 --~~L~~~l~~~g~~v~IETnGt~~~--------~~~~d~it~SPK~~~~  140 (211)
                        ..+.+.++..+..  +.||++...        ...++++.+|.....+
T Consensus       118 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~v~i~les~~~  165 (348)
T 3iix_A          118 VISDIVKEIKKMGVA--VTLSLGEWPREYYEKWKEAGADRYLLRHETANP  165 (348)
T ss_dssp             HHHHHHHHHHTTSCE--EEEECCCCCHHHHHHHHHHTCCEEECCCBCSCH
T ss_pred             HHHHHHHHHHCCCHH--CCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCH
T ss_conf             888998864012010--023444116899999987426278844442334


No 8  
>>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:)
Probab=98.17  E-value=1.3e-05  Score=58.49  Aligned_cols=102  Identities=10%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             CCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf             3159997-68988875553333236888877575232-588866078999999999875216678738998077200003
Q gi|254780202|r   22 RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV   99 (211)
Q Consensus        22 ~p~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~-~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~   99 (211)
                      .+.+++- ..|||+           +|.||....... .......++++++.+.+..+..   .....|.++||||++.+
T Consensus        65 ~~~~~~~~t~~C~~-----------~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~---~g~~~i~~~gg~~~~~~  130 (369)
T 1r30_A           65 VSTLLSIKTGACPE-----------DCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA---AGSTRFCMGAAWKNPHE  130 (369)
T ss_dssp             EEEEEEEECSCBSS-----------CCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH---TTCSEEEEEECCSSCCT
T ss_pred             EEEEEEECCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEEEECCCCCH
T ss_conf             98687744899998-----------79229983418999875455787899999999997---39979999873588652


Q ss_pred             -CC-HHHHHHHH-CCCEEEEECCCCCCC--------CCCCEEEEECCCC
Q ss_conf             -51-78999986-898799972788866--------7885079841677
Q gi|254780202|r  100 -DV-PLIQALNK-RGFEIAVETNGTIEP--------PQGIDWICVSPKA  137 (211)
Q Consensus       100 -l~-~L~~~l~~-~g~~v~IETnGt~~~--------~~~~d~it~SPK~  137 (211)
                       .. .+...++. .+....+.||+....        ...++.+.+|...
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~  179 (369)
T 1r30_A          131 RDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT  179 (369)
T ss_dssp             TTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBS
T ss_pred             HHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf             6999999999986523844530557789999999984786089753020


No 9  
>>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364)
Probab=97.35  E-value=0.0083  Score=39.38  Aligned_cols=111  Identities=14%  Similarity=0.229  Sum_probs=62.6

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             1373159997689888755533332368888775752325888660789999-999998752166787389980772000
Q gi|254780202|r   19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLL   97 (211)
Q Consensus        19 ~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i-~~~i~~~~~~~~~~~~~VviTGGEPll   97 (211)
                      .-+.-++++=.-|||.           +|.||.....+.............+ .++..............+.++||+|++
T Consensus        49 ~~~~~~~~~~~rGC~~-----------~C~fC~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~g~~~~~~~~~~~~~  117 (364)
T 1olt_A           49 PERPLSLYVHIPFCHK-----------LCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTY  117 (364)
T ss_dssp             TTSCEEEEEEECEESS-----------CCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGG
T ss_pred             CCCCEEEEEEECCCCC-----------CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             9995399997189898-----------88999882565888551999999999999997766389974699974875165


Q ss_pred             CC---CCHHHHHHHHCC-----CEEEEECCCCCCC--------CCCCEEEEECCCCCCC
Q ss_conf             03---517899998689-----8799972788866--------7885079841677741
Q gi|254780202|r   98 QV---DVPLIQALNKRG-----FEIAVETNGTIEP--------PQGIDWICVSPKAGCD  140 (211)
Q Consensus        98 q~---l~~L~~~l~~~g-----~~v~IETnGt~~~--------~~~~d~it~SPK~~~~  140 (211)
                      ..   ...|++.+++..     ....++||+..--        ...++.+.++.....+
T Consensus       118 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~G~~~i~ig~es~~~  176 (364)
T 1olt_A          118 LNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNK  176 (364)
T ss_dssp             SCHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf             99999999999999865777662147983499872778999973799879983686867


No 10 
>>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112)
Probab=95.62  E-value=0.038  Score=34.87  Aligned_cols=78  Identities=15%  Similarity=0.268  Sum_probs=54.0

Q ss_pred             CCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-
Q ss_conf             31599976-8988875553333236888877575232588866078999999999875216678738998077200003-
Q gi|254780202|r   22 RVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-   99 (211)
Q Consensus        22 ~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-   99 (211)
                      .+...|.. -||+-           +|.||.+.+.+   ......+++.+++.++.+..   .+.+.+.+++..-..+. 
T Consensus         3 ~~~~~i~tsRGCp~-----------~C~FC~~~~~~---g~~r~r~~~~v~~ei~~l~~---~g~~~i~~~~~~~~~~~~   65 (112)
T 2qgq_A            3 RPYAYVKISDGCDR-----------GCTFCSIPSFK---GSLRSRSIEDITREVEDLLK---EGKKEIILVAQDTTSYGI   65 (112)
T ss_dssp             CSEEEEESBCCC---------------------------CCCCBCCHHHHHHHHHHHHH---TTCCEEEEECTTGGGTTH
T ss_pred             CCEEEEEECCCCCC-----------CCEECEEEEEE---CCEEEECHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCC
T ss_conf             85099898679899-----------77557342122---97287099999999999998---799689998503664554


Q ss_pred             -------CCHHHHHHHHCCCEEEE
Q ss_conf             -------51789999868987999
Q gi|254780202|r  100 -------DVPLIQALNKRGFEIAV  116 (211)
Q Consensus       100 -------l~~L~~~l~~~g~~v~I  116 (211)
                             +.+|++.+.+.+..+.+
T Consensus        66 ~~~~~~~~~~l~~~~~~~~~~~~~   89 (112)
T 2qgq_A           66 DLYRKQALPDLLRRLNSLNGEFWI   89 (112)
T ss_dssp             HHHSSCCHHHHHHHHHTSSSSCEE
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             233443278887655303441101


No 11 
>>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} (A:80-220)
Probab=82.27  E-value=2.9  Score=22.14  Aligned_cols=40  Identities=18%  Similarity=0.159  Sum_probs=34.1

Q ss_pred             CCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             873899807720000-3517899998689879997278886
Q gi|254780202|r   84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        84 ~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ....+.|||++.+.. ++.+|++.|+..|.++..+.++...
T Consensus        26 ~~g~~~i~G~~~l~~Rp~~~l~~~L~~~G~~i~~~~~~~~~   66 (141)
T 1rf6_A           26 ADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLP   66 (141)
T ss_dssp             CSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEE
T ss_pred             CCCEECCCCCHHHHCCCCCHHHHHHHHCCCEEEECCCCCCC
T ss_conf             14333466886662653201234577428479831355630


No 12 
>>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* (A:83-228)
Probab=77.74  E-value=3.6  Score=21.50  Aligned_cols=40  Identities=13%  Similarity=0.184  Sum_probs=33.5

Q ss_pred             CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             73899807720000-35178999986898799972788866
Q gi|254780202|r   85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP  124 (211)
Q Consensus        85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~~  124 (211)
                      ...+++||++.|.. ++.+|++.|++.|.++..+.++..++
T Consensus        27 ~~~~~i~G~~~l~~Rp~~~l~~~L~~~G~~i~~~~~~~~~~   67 (146)
T 2pqc_A           27 DFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPV   67 (146)
T ss_dssp             SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEE
T ss_pred             CCCEECCCCCCCCCCCCCHHHEEEEEECEEEEECCCCCCCE
T ss_conf             77331468801474212202100021001675045886777


No 13 
>>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} (A:1-131)
Probab=68.06  E-value=9  Score=18.81  Aligned_cols=47  Identities=21%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             999999999875216678738998077200003-51789999868987999
Q gi|254780202|r   67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        67 ~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      .+++.+.+.+..   ......+.++.|.|+++. -..++..+++.|+.+.+
T Consensus        80 ~~~~~~~i~~~~---~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~gi~v~v  127 (131)
T 2qbu_A           80 WDSAARMVAAEL---EDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEM  127 (131)
T ss_dssp             HHHHHHHHHHHH---HTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHH---HCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf             999999999998---679879998344321113301245554325773699


No 14 
>>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} (A:1-125)
Probab=65.77  E-value=7.9  Score=19.17  Aligned_cols=48  Identities=15%  Similarity=0.128  Sum_probs=31.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             8999999999875216678738998077200003-51789999868987999
Q gi|254780202|r   66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ..+++.+.+.+...   ...--+.++||-|+++. ...|+..+++.|+.+.+
T Consensus        74 ~~~~~~~~i~~~~~---g~~vv~~~~gg~P~~y~~~~~l~~~~~~~g~~vei  122 (125)
T 3kwp_A           74 TQERIPQLIAKLKQ---GXQIAQVSDAGXPSISDPGHELVNACIDAHIPVVP  122 (125)
T ss_dssp             HHHHHHHHHHHHHT---TCEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             16579999999985---99789997688851036699999985187558998


No 15 
>>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} (A:)
Probab=65.36  E-value=3.4  Score=21.67  Aligned_cols=35  Identities=20%  Similarity=0.553  Sum_probs=27.8

Q ss_pred             ECCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             510558401373159997689--8887555333323688887757523
Q gi|254780202|r   11 LTLQGEGGHAGRVAVFCRFSG--CNLWSGREQDRLSAQCRFCDTDFVG   56 (211)
Q Consensus        11 ~SiQGEG~~~G~p~vFiRl~G--CnL~c~~~~~~~~~~C~~CDT~y~~   56 (211)
                      .|=.|.|.-.|-|-|||.|..  .+.           .|.|||-.|..
T Consensus        29 vaCDGg~gaLGHPrVyi~ld~~~g~~-----------~C~YCg~rfv~   65 (80)
T 2jvm_A           29 VACDGGEGALGHPRVWLSIPHETGFV-----------ECGYCDRRYIH   65 (80)
T ss_dssp             EEECCCSTTCCCCCEEEECCTTTCEE-----------ECSSSSCEEEE
T ss_pred             EEECCCCCCCCCCEEEEECCCCCCEE-----------ECCCCCCEEEC
T ss_conf             99519999899988978758999869-----------88899885560


No 16 
>>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* (A:134-247)
Probab=65.15  E-value=2.4  Score=22.63  Aligned_cols=32  Identities=6%  Similarity=0.104  Sum_probs=14.2

Q ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHCCCEEEE
Q ss_conf             73899807720000351789999868987999
Q gi|254780202|r   85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV  116 (211)
Q Consensus        85 ~~~VviTGGEPllq~l~~L~~~l~~~g~~v~I  116 (211)
                      .+..+++-|.++......+...+...|..+..
T Consensus        45 ~~v~iv~~~~~~~~~~~~~~~~~~~~gi~~~~   76 (114)
T 3f8d_A           45 TKVYLIHRRDTFKAQPIYVETVKKKPNVEFVL   76 (114)
T ss_dssp             SEEEEECSSSSCCSCHHHHHHHHTCTTEEEEC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             33898403664430157899985259879981


No 17 
>>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:1-120)
Probab=62.88  E-value=11  Score=18.16  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             CCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEE
Q ss_conf             6787389980772000035-1789999868987999
Q gi|254780202|r   82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAV  116 (211)
Q Consensus        82 ~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~I  116 (211)
                      ....+.+.++.|.|+++.. ..|++.+.+.|+.+.+
T Consensus        81 ~~~~~V~~l~~GDP~iy~~~~~l~~~~~~~g~~v~v  116 (120)
T 1wde_A           81 ALDAVVAVVTAGDPXVATTHSSLAAEALEAGVAVRY  116 (120)
T ss_dssp             SSCCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEE
T ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             737995999668986454399999999845896798


No 18 
>>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} (A:1-120)
Probab=61.96  E-value=12  Score=18.05  Aligned_cols=50  Identities=4%  Similarity=0.098  Sum_probs=36.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             078999999999875216678738998077200003-51789999868987999
Q gi|254780202|r   64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ....+++.+.+.++...   ....++++.|.|+++. ...|++.+++.|+.+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~---g~~v~~l~~GDP~~y~~~~~l~~~~~~~gi~v~v  117 (120)
T 1wyz_A           67 HTSPEDISGYLKPLAGG---ASXGVISEAGCPAVADPGADVVAIAQRQKLKVIP  117 (120)
T ss_dssp             SCCHHHHHHHHHHHHTT---CCEEEECC-------CHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHCC---CEEEEEECCCCCEECCHHHHHHHHHHCCCCCCCC
T ss_conf             67777666666887539---6399996224310225256533332113422000


No 19 
>>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum} (A:)
Probab=61.83  E-value=12  Score=18.03  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=33.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEE-EECCCCCCCC-CCHHHHHHHHCCCEEEEE
Q ss_conf             07899999999987521667873899-8077200003-517899998689879997
Q gi|254780202|r   64 RYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQV-DVPLIQALNKRGFEIAVE  117 (211)
Q Consensus        64 ~~~~~~i~~~i~~~~~~~~~~~~~Vv-iTGGEPllq~-l~~L~~~l~~~g~~v~IE  117 (211)
                      ..+.++..+.+.+....   ..+.++ ++.|.|+++. ...+++.+++.|+++.+-
T Consensus        62 ~~~~~~~~~~~~~~~~~---g~~vv~~~~~GDp~~y~~~~~l~~~~~~~~i~vevI  114 (117)
T 3hh1_A           62 SFNEERAVRQVIELLEE---GSDVALVTDAGTPAISDPGYTXASAAHAAGLPVVPV  114 (117)
T ss_dssp             STTHHHHHHHHHHHHHT---TCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred             CCHHHHHHHHHHHHHHC---CCCEEEEECCCCCEEECCHHHHHHHHHHCCCCEEEC
T ss_conf             51578899999999984---995999906999646577899999999869968957


No 20 
>>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* (A:1-133)
Probab=61.73  E-value=8.2  Score=19.08  Aligned_cols=34  Identities=15%  Similarity=0.294  Sum_probs=27.3

Q ss_pred             CCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEE
Q ss_conf             87389980772000035-17899998689879997
Q gi|254780202|r   84 EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE  117 (211)
Q Consensus        84 ~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IE  117 (211)
                      +...+.++.|.|+++.- ..|++.++++|+.+.+-
T Consensus        96 G~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~ii  130 (133)
T 2e0n_A           96 GRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT  130 (133)
T ss_dssp             TCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEECCCCCCCCCCHHEECCCCCCCCEEEEEC
T ss_conf             97147863544321142101101123442026976


No 21 
>>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrinogen-III methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} (A:1-130)
Probab=61.55  E-value=12  Score=18.00  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=35.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             078999999999875216678738998077200003-51789999868987999
Q gi|254780202|r   64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ....++..+.+.+....   +.+.+.++.|.|+++. -..++++++++|+.+.+
T Consensus        75 ~~~~~~~~~~i~~~~~~---g~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~i  125 (130)
T 1s4d_A           75 SPKQRDISLRLVELARA---GNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRI  125 (130)
T ss_dssp             CCCHHHHHHHHHHHHHT---TCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEE
T ss_pred             CCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             20256788999999977---9918999478984046689999999852786587


No 22 
>>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} (A:1-130)
Probab=60.78  E-value=12  Score=17.91  Aligned_cols=49  Identities=10%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             78999999999875216678738998077200003-51789999868987999
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ...++..+.+.+...   ...+.++++-|.|+++. ...|+..+++.|+.+.+
T Consensus        77 ~~~~~~~~~i~~~~~---~g~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~v  126 (130)
T 1cbf_A           77 MHLEEMVGTMLDRMR---EGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEI  126 (130)
T ss_dssp             CCHHHHHHHHHHHHT---TTCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHH---CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             657888999999998---09846763588642226067789999732664487


No 23 
>>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus HB8} (A:1-120)
Probab=60.69  E-value=12  Score=17.90  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=28.0

Q ss_pred             CCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEEC
Q ss_conf             87389980772000035-178999986898799972
Q gi|254780202|r   84 EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET  118 (211)
Q Consensus        84 ~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IET  118 (211)
                      ..+.++++-|.|+++.. ..|++.+.+.|+++.+--
T Consensus        75 g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiP  110 (120)
T 1va0_A           75 HPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVP  110 (120)
T ss_dssp             SSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEEECCCCCCEECHHHHHHHHHHHCCCCCCCCC
T ss_conf             430233026754110278899998751234201475


No 24 
>>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:46-136,A:384-458)
Probab=58.61  E-value=13  Score=17.67  Aligned_cols=55  Identities=9%  Similarity=0.047  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-CC-CHHHHHHHHCCCEEEEECCCC
Q ss_conf             07899999999987521667873899807720000-35-178999986898799972788
Q gi|254780202|r   64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VD-VPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus        64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-~l-~~L~~~l~~~g~~v~IETnGt  121 (211)
                      ..+..++.+.+.+   ...++.+.+.+.|+.|+.+ +. ..+.+.|.+..|-|.++.-=|
T Consensus        96 ~~~~~~~~~~~~~---~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~kld~vV~~d~~~t  152 (166)
T 2e7z_A           96 MANPTALFTAMAT---EKPYPVKAFFALASNALMGYANQQNALKGLMNQDLVVCYDQFMT  152 (166)
T ss_dssp             CCCHHHHHHHHHH---CCSSCCCEEEEESCCGGGSSSCHHHHHHHHHTCSEEEEEESSCC
T ss_pred             CCCCHHHHHHHHH---CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf             3463167777650---37775289999378610118750455666531451687314577


No 25 
>>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... (A:1-122)
Probab=57.93  E-value=14  Score=17.59  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             CCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEEC
Q ss_conf             787389980772000035-178999986898799972
Q gi|254780202|r   83 KEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET  118 (211)
Q Consensus        83 ~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IET  118 (211)
                      ...+.+.+..|.|+++.- ..|++.+.+.|+.+.+--
T Consensus        76 ~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~v~viP  112 (122)
T 2z6r_A           76 KENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIH  112 (122)
T ss_dssp             TTSCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEEC
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEECC
T ss_conf             6998899967865544469999999986588159837


No 26 
>>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:1-115)
Probab=57.91  E-value=14  Score=17.59  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEE
Q ss_conf             0789999999998752166787389980772000035-1789999868987999
Q gi|254780202|r   64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAV  116 (211)
Q Consensus        64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~I  116 (211)
                      ..+.++..+.+.+....   ....++++.|-|+++.- ..|+..+++.|+.+.+
T Consensus        61 ~~~~~~~~~~i~~~~~~---g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~vei  111 (115)
T 1ve2_A           61 KTPQEAITARLIALARE---GRVVARLKGGDPMVFGRGGEEALALRRAGIPFEV  111 (115)
T ss_dssp             CCCHHHHHHHHHHHHHT---TCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEE
T ss_pred             CCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf             13399999999999977---9867674154331224288999997406787599


No 27 
>>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:213-330)
Probab=55.84  E-value=7.2  Score=19.45  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=26.9

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             8738998077200003-51789999868987999
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ..+.++++.|-|+++. -..|++.++++|+.+.+
T Consensus        81 g~~v~~l~~GDP~~~~~~~~l~~~~~~~~~~v~v  114 (118)
T 1pjq_A           81 GKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSV  114 (118)
T ss_dssp             TCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEE
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             9859997688732106799999985048737994


No 28 
>>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} (A:1-132)
Probab=53.63  E-value=14  Score=17.51  Aligned_cols=34  Identities=12%  Similarity=0.310  Sum_probs=27.5

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEE
Q ss_conf             8738998077200003-517899998689879997
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE  117 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IE  117 (211)
                      ....+.++-|.|+++. ...|++.++++|+.+.+-
T Consensus        87 g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~vi  121 (132)
T 1vhv_A           87 SKSVVLLVPGDPXVATTHSAIKLEAERKGVKTRII  121 (132)
T ss_dssp             TSEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             79689997688666650688999999749864997


No 29 
>>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis} (A:1-81)
Probab=53.53  E-value=7.5  Score=19.33  Aligned_cols=42  Identities=26%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             CCEEEEECCCCCCCC-----C--CHHHHHHHHCCC-------EEEEECCCCCCCCC
Q ss_conf             738998077200003-----5--178999986898-------79997278886678
Q gi|254780202|r   85 GRYCVLTGGEPLLQV-----D--VPLIQALNKRGF-------EIAVETNGTIEPPQ  126 (211)
Q Consensus        85 ~~~VviTGGEPllq~-----l--~~L~~~l~~~g~-------~v~IETnGt~~~~~  126 (211)
                      .+.++|-.|+-+...     +  ..|...|+.+|+       ...+||||.+.+..
T Consensus        15 ~p~~li~~G~~~~~~l~~~~it~~dl~~~lR~~gi~~l~~V~~aiLE~~G~iSVi~   70 (81)
T 3c6f_A           15 EPNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLP   70 (81)
T ss_dssp             -CEEEEETTEECHHHHHHTTCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCEEEEE
T ss_pred             CCEEEEECCEECHHHHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEEECCCCEEEEE
T ss_conf             96899999999799997849999999999997499998880088992799889998


No 30 
>>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, structural genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae} (A:1-142)
Probab=53.50  E-value=16  Score=17.12  Aligned_cols=46  Identities=24%  Similarity=0.303  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC----CCHHHHHHHHCCCEEEE
Q ss_conf             99999999875216678738998077200003----51789999868987999
Q gi|254780202|r   68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV----DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        68 ~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~----l~~L~~~l~~~g~~v~I  116 (211)
                      +++.+.+.+.   ...+...+.++.|.|+++.    +.+.+..+++.|+.+.+
T Consensus        89 ~~~~~~i~~~---~~~G~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~gi~~ev  138 (142)
T 2npn_A           89 HLLASTIRER---TPDDGAVAFLVWGDPSLYDSTLRIIEHXRNLEDLHADVKV  138 (142)
T ss_dssp             HHHHHHHHHH---SCTTCEEEEEESBCTTSSCCHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHH---HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             9999999999---9779929999689984357489999998876617997899


No 31 
>>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} (A:1-88,A:257-401)
Probab=51.76  E-value=15  Score=17.24  Aligned_cols=50  Identities=14%  Similarity=0.197  Sum_probs=28.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC-------------------CCCEEEEECCCCCCCCCCHHHHHHHHC-CCEE
Q ss_conf             6607899999999987521667-------------------873899807720000351789999868-9879
Q gi|254780202|r   62 GGRYNVDQLADLIEEQWITGEK-------------------EGRYCVLTGGEPLLQVDVPLIQALNKR-GFEI  114 (211)
Q Consensus        62 ~~~~~~~~i~~~i~~~~~~~~~-------------------~~~~VviTGGEPllq~l~~L~~~l~~~-g~~v  114 (211)
                      ..+++++++.+.+++.......                   ++-..+++|||||-.   ++.+.+++. |.++
T Consensus       132 ~~kFdp~~~l~~I~~~kVT~~~~~PTi~r~L~~~~l~~~dlssLR~i~~gGepL~p---ev~~~~~e~~G~~I  201 (233)
T 3etc_A          132 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNP---EVFNRFLEFTGIKL  201 (233)
T ss_dssp             CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCH---HHHHHHHHHHSCCC
T ss_pred             CCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH---HHHHHHHHHCCCCC
T ss_conf             54322899999876137246247899999999741100012342441036688738---88899876312200


No 32 
>>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase SCO1869, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} (A:1-48,A:164-221)
Probab=50.93  E-value=17  Score=16.85  Aligned_cols=68  Identities=18%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCCC------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC--CC
Q ss_conf             3332368888775------------------752325888660789999999998752166787389980772000--03
Q gi|254780202|r   40 QDRLSAQCRFCDT------------------DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QV   99 (211)
Q Consensus        40 ~~~~~~~C~~CDT------------------~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll--q~   99 (211)
                      +-+++.-|+||=-                  ...|..-.....-..+++.+........+-.+.+..+|-|.-.+.  |+
T Consensus         6 ~i~sD~~CPwCyig~~~l~~ai~~~~~~~~v~i~~~pf~l~P~~~~~~V~~~~~~a~~~GI~gVP~fiingk~~i~GAqp   85 (106)
T 3gl5_A            6 EIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQP   85 (106)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHTCTTGGGEEEEEEECCSCTTTTHHHHHHHHHHHHHTTCCSSSEEEETTTEEEESSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCC
T ss_conf             99981978729976999999999668768759999866646888999999999999986995057699999788868999


Q ss_pred             CCHHHHHH
Q ss_conf             51789999
Q gi|254780202|r  100 DVPLIQAL  107 (211)
Q Consensus       100 l~~L~~~l  107 (211)
                      ...+.+.|
T Consensus        86 ~e~f~~~i   93 (106)
T 3gl5_A           86 AEVFTQAL   93 (106)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 33 
>>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis} (A:82-153)
Probab=49.50  E-value=18  Score=16.76  Aligned_cols=42  Identities=14%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             CCCEEEEECCCCCCCC-----C--CHHHHHHHHCCCE-------EEEECCCCCCCC
Q ss_conf             8738998077200003-----5--1789999868987-------999727888667
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-----D--VPLIQALNKRGFE-------IAVETNGTIEPP  125 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-----l--~~L~~~l~~~g~~-------v~IETnGt~~~~  125 (211)
                      +.+.++|..|+-+..+     +  ..|...|+.+|+.       ..+||||++.+.
T Consensus         9 g~p~~Li~dG~i~~~nL~~~~i~~~~l~~~LR~~gi~~~~~V~~a~lE~~G~lsv~   64 (72)
T 3c6f_A            9 SLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAEWHKNKPLYTV   64 (72)
T ss_dssp             CCCEEEEETTEECHHHHHHHSCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCCEEE
T ss_pred             CCCCEEEECCEECHHHHHHHCCCHHHHHHHHHHCCCCCHHHEEEEEEECCCCEEEE
T ss_conf             87756998999969999770999999999999829999889789999779979999


No 34 
>>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} (A:)
Probab=49.50  E-value=5.5  Score=20.24  Aligned_cols=36  Identities=22%  Similarity=0.503  Sum_probs=26.8

Q ss_pred             CCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             105584013731599976898-8875553333236888877575232
Q gi|254780202|r   12 TLQGEGGHAGRVAVFCRFSGC-NLWSGREQDRLSAQCRFCDTDFVGI   57 (211)
Q Consensus        12 SiQGEG~~~G~p~vFiRl~GC-nL~c~~~~~~~~~~C~~CDT~y~~~   57 (211)
                      +=.|.|.-.|-|-|||.+..= +-          .-|.|||-.|.-.
T Consensus        17 aCDGG~gaLGHPrVyi~ld~~~~~----------v~C~YCg~rfv~~   53 (67)
T 2jrr_A           17 ACDGGEGALGHPRVWLQIPEDTGW----------VECPYCDCKYVLK   53 (67)
T ss_dssp             EEEESSTTSEEEEEEEECCTTTSE----------EEETTTTEEEEET
T ss_pred             EECCCCCCCCCCEEEEECCCCCCE----------EECCCCCCEEEEC
T ss_conf             957999989999899984699997----------9888888898977


No 35 
>>2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca component; PTS system, fructose specific IIB subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} (A:)
Probab=42.99  E-value=14  Score=17.56  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=19.1

Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             789999868987999727888667
Q gi|254780202|r  102 PLIQALNKRGFEIAVETNGTIEPP  125 (211)
Q Consensus       102 ~L~~~l~~~g~~v~IETnGt~~~~  125 (211)
                      .|-+.-+++|+.+.+||+|+.-+.
T Consensus        24 aLe~aa~~~G~~ikVEtqG~~G~e   47 (106)
T 2r48_A           24 NLQKAADRLGVSIKVETQGGIGVE   47 (106)
T ss_dssp             HHHHHHHHHTCEEEEEEEETTEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             999999986996999965887877


No 36 
>>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} (A:121-221)
Probab=42.58  E-value=14  Score=17.51  Aligned_cols=63  Identities=14%  Similarity=0.041  Sum_probs=26.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf             6888877575232588866078999999999875216678738998077200003517899998689879
Q gi|254780202|r   45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI  114 (211)
Q Consensus        45 ~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v  114 (211)
                      +.|+|||- |......-.---.-+...+....+.   .......+++.|.++.-   ..-+.|++.|+++
T Consensus         9 ~~c~~cdg-~~~~gk~v~ViG~g~~a~~~A~~l~---~~~~~Vti~~~~~~~~~---~~~~~l~~~~i~i   71 (101)
T 3fbs_A            9 FHCPYCHG-YELDQGKIGVIAASPMAIHHALMLP---DWGETTFFTNGIVEPDA---DQHALLAARGVRV   71 (101)
T ss_dssp             ESCHHHHT-GGGTTCEEEEECCSTTHHHHHHHGG---GTSEEEEECTTTCCCCH---HHHHHHHHTTCEE
T ss_pred             EEECCCCH-HHHCCCEEEEECCCHHHHHHHHHHH---CCCCEEEEECCCHHHCH---HHHHHHHHCHHHE
T ss_conf             75013442-6637987999658746999999997---38988999827611075---7899874220000


No 37 
>>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} (A:165-339)
Probab=41.86  E-value=24  Score=15.93  Aligned_cols=59  Identities=10%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECC-----------CCCCC--CCCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             78999999999875216678738998077-----------20000--35178999986898799972788866
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGG-----------EPLLQ--VDVPLIQALNKRGFEIAVETNGTIEP  124 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG-----------EPllq--~l~~L~~~l~~~g~~v~IETnGt~~~  124 (211)
                      -+.+++...+.+....+.-..| |..+|+           +|.+-  .+..+++..++.|++|...++|...+
T Consensus        18 ~~~~e~~~~v~~~~~~g~d~IK-i~~dG~~~~~~~~~~~g~~~~s~e~l~~~v~~A~~~G~~v~~Ha~g~~a~   89 (175)
T 2p9b_A           18 GTPEEARTAVAQNLKAGVNAIK-IAATGGVTDAQEIGEAGSPQXSVEQXRAICDEAHQYGVIVGAHAQSPEGV   89 (175)
T ss_dssp             CCHHHHHHHHHHHHHTTCSCEE-EECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEECSHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             2125666666666543221100-10135543222333321111118999988876541243022102441556


No 38 
>>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} (A:)
Probab=41.67  E-value=14  Score=17.48  Aligned_cols=28  Identities=14%  Similarity=0.324  Sum_probs=20.1

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             73159997689888755533332368888775752325
Q gi|254780202|r   21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ   58 (211)
Q Consensus        21 G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~   58 (211)
                      --|-|||-++.=|=          .-|+||.|-|-+..
T Consensus        35 DHPHvFlDMG~d~E----------~iCpYCSTLYry~~   62 (87)
T 2jz8_A           35 DHPHIFIDMGSTDE----------KICPYCSTLYRYDP   62 (87)
T ss_dssp             SSSSCEEECTTCCE----------ECCTTTCCEEECCT
T ss_pred             CCCEEEEECCCCCE----------EECCCCCCEEEECC
T ss_conf             99889897599997----------98889998878477


No 39 
>>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} (B:107-168)
Probab=39.67  E-value=18  Score=16.79  Aligned_cols=11  Identities=27%  Similarity=0.963  Sum_probs=8.8

Q ss_pred             CCCCCCCCCCC
Q ss_conf             36888877575
Q gi|254780202|r   44 SAQCRFCDTDF   54 (211)
Q Consensus        44 ~~~C~~CDT~y   54 (211)
                      .++|.|||+.+
T Consensus        37 ~lrC~YCe~~~   47 (62)
T 1pg5_B           37 KMRCEYCETII   47 (62)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEEECCCCEE
T ss_conf             89815799892


No 40 
>>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* (A:1-131)
Probab=39.60  E-value=26  Score=15.70  Aligned_cols=47  Identities=19%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEE
Q ss_conf             89999999998752166787389980772000035-178999986898799
Q gi|254780202|r   66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA  115 (211)
Q Consensus        66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~  115 (211)
                      ..++..+.+.....   .....++++.|.|+++.- ..|++.+++.|+...
T Consensus        59 ~~~~~~~~~~~~~~---~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~~~  106 (131)
T 2zvb_A           59 EELDRAEEALERAL---SGQRVALVSGGDPGIYGMAAPVLELMEERGLKRV  106 (131)
T ss_dssp             SHHHHHHHHHHHHH---TTCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             58999999999997---1991899835766544405899999998399743


No 41 
>>2w19_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AROG; transferase isomerase complex, aromatic amino acid biosynthesis, multi-enzyme complex; 2.15A {Mycobacterium tuberculosis} PDB: 2w1a_A* 2b7o_A* (A:)
Probab=38.89  E-value=26  Score=15.62  Aligned_cols=54  Identities=13%  Similarity=0.311  Sum_probs=38.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf             88660789999999998752166787389980--77200003517899998689879
Q gi|254780202|r   60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFEI  114 (211)
Q Consensus        60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~v  114 (211)
                      +-|..++.+++++.++.+.+... +.+...||  |..=....+-+|+++.++.|..|
T Consensus       316 KvGP~~~p~el~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~li~aV~~~G~~V  371 (472)
T 2w19_A          316 KLGPNMTPELAVEYVERLDPHNK-PGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQV  371 (472)
T ss_dssp             EECTTCCHHHHHHHHHHHCTTCC-TTSEEEEECCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred             EECCCCCHHHHHHHHHHHCCCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf             35899999999999998497887-862899960383789988899999998779964


No 42 
>>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} (A:)
Probab=38.84  E-value=12  Score=18.06  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=20.2

Q ss_pred             CCHHHHHHHHCCCEEEEE-CCCCCCCC
Q ss_conf             517899998689879997-27888667
Q gi|254780202|r  100 DVPLIQALNKRGFEIAVE-TNGTIEPP  125 (211)
Q Consensus       100 l~~L~~~l~~~g~~v~IE-TnGt~~~~  125 (211)
                      ...+++.+......+|+| |||++.-.
T Consensus        12 Vq~~L~~f~~~~VYiHlETTnGAYAsH   38 (119)
T 1njh_A           12 VQASLERYADRPVYIHLETTTGSYSAH   38 (119)
T ss_dssp             HHHHHHHTTTSCEEEEEEEEECC----
T ss_pred             HHHHHHHHCCCCEEEEEEECCHHHHHH
T ss_conf             999999846995499997336266652


No 43 
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=37.08  E-value=21  Score=16.35  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             EECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             807720000351789999868987999727888
Q gi|254780202|r   90 LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        90 iTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      +.|.+|.-. ..+.++.|++.|+++.|=||++-
T Consensus        13 ~~~~~~~~~-a~e~l~~L~~~G~~~~ivTN~~~   44 (131)
T 1zjj_A           13 YRGNRAIPG-VRELIEFLKERGIPFAFLTNNST   44 (131)
T ss_dssp             EETTEECTT-HHHHHHHHHHHTCCEEEEESCCS
T ss_pred             EECCCCCCC-HHHHHHHHHHCCCCEEEEECCCC
T ss_conf             889995844-99999999977996899948999


No 44 
>>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284)
Probab=36.70  E-value=19  Score=16.63  Aligned_cols=31  Identities=19%  Similarity=0.025  Sum_probs=23.2

Q ss_pred             ECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             07720000351789999868987999727888
Q gi|254780202|r   91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        91 TGGEPllq~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      .|++|.= ...++++.|++.|+++.+=||++.
T Consensus        27 ~~~~~~p-g~~~~L~~L~~~g~~~~i~Tn~~~   57 (162)
T 2hx1_A           27 TYNGLLP-GIENTFDYLKAQGQDYYIVTNDAS   57 (162)
T ss_dssp             ETTEECT-THHHHHHHHHHTTCEEEEEECCCS
T ss_pred             ECCCCCH-HHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             3998483-199999999986995899968999


No 45 
>>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} (A:30-237)
Probab=36.19  E-value=29  Score=15.35  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=29.7

Q ss_pred             CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCC
Q ss_conf             3899807720000-35178999986898799972788
Q gi|254780202|r   86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus        86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt  121 (211)
                      ..++++|+..+.. ++..+++.|++.|.++..+.++.
T Consensus        87 ~~~~~~g~~~l~~r~~~~~~~~L~~mG~~i~~~~~~~  123 (208)
T 2yvw_A           87 AVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGYV  123 (208)
T ss_dssp             EEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEETTEE
T ss_pred             CCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             1001013223465542036763000343222223221


No 46 
>>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} (A:159-277)
Probab=34.14  E-value=31  Score=15.13  Aligned_cols=58  Identities=17%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECC---------CCCCCC--CCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             78999999999875216678738998077---------200003--517899998689879997278886
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGG---------EPLLQV--DVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG---------EPllq~--l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      -+.+++...+.+....+.-..| +..+||         +|.+-+  +..++++.++.|++|...++|...
T Consensus        15 ~~~~e~~~~v~~~~~~g~d~IK-i~~~g~~~~~~~~~~~~~~~~e~l~a~v~~Ah~~G~~v~~Ha~~~~~   83 (119)
T 2qs8_A           15 NGPYEVYAAVRQRYKDGADGIK-ITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGXWVAVHAHGAEG   83 (119)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEE-EECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCHH-HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             6789999888876531432000-00023222233344430101567799999999839962112466066


No 47 
>>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271)
Probab=33.27  E-value=32  Score=15.04  Aligned_cols=34  Identities=12%  Similarity=0.158  Sum_probs=25.7

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             99807720000351789999868987999727888
Q gi|254780202|r   88 CVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        88 VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      |..-|++|+-. ..++++.|+++|+++.|=|||+.
T Consensus        27 vl~~~~~~~pg-a~e~l~~L~~~G~~~~~vTN~~~   60 (145)
T 1vjr_A           27 TFYLDDSLLPG-SLEFLETLKEKNKRFVFFTNNSS   60 (145)
T ss_dssp             TTEETTEECTT-HHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCC
T ss_conf             46879935820-99999999976997899458998


No 48 
>>2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc component; fructose specific IIB subunit, PFAM02379, structural genomics; HET: MSE; 1.60A {Bacillus subtilis subsp} (A:)
Probab=33.18  E-value=20  Score=16.39  Aligned_cols=24  Identities=38%  Similarity=0.408  Sum_probs=19.3

Q ss_pred             CHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             178999986898799972788866
Q gi|254780202|r  101 VPLIQALNKRGFEIAVETNGTIEP  124 (211)
Q Consensus       101 ~~L~~~l~~~g~~v~IETnGt~~~  124 (211)
                      ..|-+.-+++|+.+.+||.|+.-+
T Consensus        23 eaLe~aa~~~G~~ikVEtqG~~G~   46 (106)
T 2r4q_A           23 DALKEKAKELGVEIKVETNGSSGI   46 (106)
T ss_dssp             HHHHHHHHHHTCCEEEEEEETTEE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             999999998799599995588787


No 49 
>>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B* (B:70-305)
Probab=33.00  E-value=15  Score=17.21  Aligned_cols=10  Identities=10%  Similarity=-0.041  Sum_probs=5.1

Q ss_pred             CEEEEECCCC
Q ss_conf             5079841677
Q gi|254780202|r  128 IDWICVSPKA  137 (211)
Q Consensus       128 ~d~it~SPK~  137 (211)
                      +-||+.+.|.
T Consensus       141 ~i~v~C~~~~  150 (236)
T 2zxe_B          141 VLPLRCAAKR  150 (236)
T ss_dssp             EEEEEEEC--
T ss_pred             EEEEEEEECC
T ss_conf             3778988567


No 50 
>>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190)
Probab=32.71  E-value=33  Score=14.98  Aligned_cols=36  Identities=14%  Similarity=0.159  Sum_probs=26.3

Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             8998077200003517899998689879997278886
Q gi|254780202|r   87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      +|-=-||-|. -...++++.|+++|+++.+=||++..
T Consensus         9 ~~~~~~~~l~-pgv~e~L~~Lk~~g~~~~i~Sn~~~~   44 (124)
T 2fi1_A            9 YIWDLGGTLF-EGVSDLLEDISNQGGRHFLVSHRNDQ   44 (124)
T ss_dssp             EEECTBTTBC-TTHHHHHHHHHHTTCEEEEECSSCTH
T ss_pred             EEEECCCCCC-CHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             9995899756-20699986400120121202322222


No 51 
>>1g6s_A EPSP synthase; two-domain structure, inside-OUT alpha-beta barrel, transferase; HET: S3P GPJ; 1.50A {Escherichia coli} (A:21-243)
Probab=32.64  E-value=33  Score=14.97  Aligned_cols=40  Identities=23%  Similarity=0.152  Sum_probs=32.5

Q ss_pred             CCCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             7873899807720000-351789999868987999727888
Q gi|254780202|r   83 KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        83 ~~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      .....++++|++.+.+ ++.++++.|++.|-++..+.++..
T Consensus        88 ~~~~~~~~~g~~~l~~rp~~~l~~~L~~~Ga~i~~~~~~~~  128 (223)
T 1g6s_A           88 LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENY  128 (223)
T ss_dssp             SSEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTS
T ss_pred             CCCEEEEEECCHHHCCCCCEEEHHHHHHCCCEEEEECCCCE
T ss_conf             47349998467421579640005568866977997226741


No 52 
>>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} (A:69-148,A:245-289)
Probab=32.56  E-value=33  Score=14.96  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=23.5

Q ss_pred             CCCEEEEECCCCCCC--CCCHHHHHHHHCCCE
Q ss_conf             873899807720000--351789999868987
Q gi|254780202|r   84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE  113 (211)
Q Consensus        84 ~~~~VviTGGEPllq--~l~~L~~~l~~~g~~  113 (211)
                      ....++.-+|.|.+-  ++..|+..|++.|++
T Consensus        20 ~GdL~i~G~GDPtL~~~~L~~la~~Lk~~GI~   51 (125)
T 1w5d_A           20 NGNLYLKGKGDPTLLPSDFDKMAEILKHSGVK   51 (125)
T ss_dssp             CSCEEEEECSCTTCCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             75399994669988755699999999970875


No 53 
>>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* (A:60-136,A:229-272)
Probab=32.07  E-value=34  Score=14.91  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             CCCEEEEECCCCCCC--CCCHHHHHHHHCCCE
Q ss_conf             873899807720000--351789999868987
Q gi|254780202|r   84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE  113 (211)
Q Consensus        84 ~~~~VviTGGEPllq--~l~~L~~~l~~~g~~  113 (211)
                      ....++.-||.|.+-  ++..|++.|++.|++
T Consensus        20 ~GdL~i~G~GDPtLt~~~L~~la~~Lk~~GI~   51 (121)
T 3a3d_A           20 DGNLIVSFTGDPDLTRGQLYSLLAELKKQGIK   51 (121)
T ss_dssp             CSCEEEECCCCTTCCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             33399983479988989999999999961875


No 54 
>>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} (A:19-29,A:238-294)
Probab=31.90  E-value=20  Score=16.38  Aligned_cols=31  Identities=32%  Similarity=0.366  Sum_probs=21.5

Q ss_pred             EECCCCCCC-----CCCHHHHHHHHCCCEEEEECCC
Q ss_conf             807720000-----3517899998689879997278
Q gi|254780202|r   90 LTGGEPLLQ-----VDVPLIQALNKRGFEIAVETNG  120 (211)
Q Consensus        90 iTGGEPllq-----~l~~L~~~l~~~g~~v~IETnG  120 (211)
                      +||||=.+.     .+..++..|++.|.++..+.|+
T Consensus        25 iTgG~V~i~~~~~~hl~~il~kL~~~G~~v~~~~~~   60 (68)
T 2yvw_A           25 LTDGEILLENARINHLRAVVEKLKLIGGEVVEENGN   60 (68)
T ss_dssp             HTTCEEEEESCCGGGCHHHHHHHHHHTEEEEEETTE
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHCCCEECCCC
T ss_conf             233310320212355201223445430231001220


No 55 
>>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} (A:)
Probab=31.59  E-value=34  Score=14.86  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEE-ECC
Q ss_conf             873899807720000351789999868987999-727
Q gi|254780202|r   84 EGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV-ETN  119 (211)
Q Consensus        84 ~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~I-ETn  119 (211)
                      ..++|+|+|+-+.-+   .+.+.|.+.|+.|.+ +.|
T Consensus         5 ~~~~v~IiG~G~iG~---~ia~~L~~~G~~V~vid~~   38 (141)
T 3llv_A            5 GRYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             -CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEESC
T ss_pred             CCCCEEEECCCHHHH---HHHHHHHHCCCCEEEEECH
T ss_conf             879699989988999---9999999879938997433


No 56 
>>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} (A:134-273)
Probab=31.37  E-value=35  Score=14.83  Aligned_cols=58  Identities=9%  Similarity=0.062  Sum_probs=37.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECC---------CCCCC--CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             78999999999875216678738998077---------20000--3517899998689879997278886
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGG---------EPLLQ--VDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG---------EPllq--~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      -+.++....+.+......-.. -+..+|+         +|.+=  .+..+++..++.|++|.+.++|-..
T Consensus        36 ~~~~e~~~~~~~~~~~~~d~i-Ki~~dg~~~~~~~~~~~~~~~~e~l~~~v~~a~~~G~~v~~Ha~gd~a  104 (140)
T 3feq_A           36 DGVEGVRLAVREEIQKGATQI-KIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRA  104 (140)
T ss_dssp             CSHHHHHHHHHHHHHTTCSSE-EEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHH
T ss_pred             CCHHHHHHHHHHHHHHCCHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             789999999999765022022-211145533234553210001566666677776420012221100035


No 57 
>>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} (A:66-145,A:240-288)
Probab=30.70  E-value=35  Score=14.76  Aligned_cols=29  Identities=14%  Similarity=0.229  Sum_probs=23.7

Q ss_pred             CCEEEEECCCCCCC--CCCHHHHHHHHCCCE
Q ss_conf             73899807720000--351789999868987
Q gi|254780202|r   85 GRYCVLTGGEPLLQ--VDVPLIQALNKRGFE  113 (211)
Q Consensus        85 ~~~VviTGGEPllq--~l~~L~~~l~~~g~~  113 (211)
                      ...++.-+|.|.+-  ++..|++.|++.|++
T Consensus        21 GdL~IkGsGDPtLtse~L~~La~~Lk~~GIr   51 (129)
T 1w79_A           21 QDLYLVGRGDPTLSAEDLDAMAAEVAASGVR   51 (129)
T ss_dssp             SCEEEEECSCTTCCHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             3099995589987888999999999972875


No 58 
>>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} (A:1-20,A:86-225)
Probab=30.60  E-value=36  Score=14.75  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             3517899998689879997278886
Q gi|254780202|r   99 VDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        99 ~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ...++++.|+++|+++.|=||++..
T Consensus        28 g~~~~L~~Lk~~giki~ivSn~~~~   52 (160)
T 3d6j_A           28 DTLPTLTHLKKQGIRIGIISTKYRF   52 (160)
T ss_dssp             THHHHHHHHHHHTCEEEEECSSCHH
T ss_pred             CHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf             5999999999889959997168267


No 59 
>>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259)
Probab=30.41  E-value=36  Score=14.73  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=16.2

Q ss_pred             CHHHHHHHHCCCEEEEECCCCC
Q ss_conf             1789999868987999727888
Q gi|254780202|r  101 VPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus       101 ~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      .++++.|++.|+++.|=||++-
T Consensus        29 ~e~L~~L~~~G~~~~iiTN~~~   50 (140)
T 2ho4_A           29 QEALKRLRATSVXVRFVTNTTK   50 (140)
T ss_dssp             HHHHHHHHTSSCEEEEEECCSS
T ss_pred             HHHHHHHHHCCCCEEEEECCCC
T ss_conf             9999999986998899948998


No 60 
>>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} (A:1-140)
Probab=29.41  E-value=37  Score=14.61  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=25.9

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             8738998077200003-51789999868987999
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ..+.+.+.-|.|+++. -..|++.+++.|+++.+
T Consensus        95 ~~~v~~l~~GDP~~~~~~~~l~~~~~~~~i~v~v  128 (140)
T 3i4t_A           95 TKNVALLVVGDVYGATTHSDIFVRCQKMGIEVKV  128 (140)
T ss_dssp             TSEEEEEESBCHHHHCTTHHHHHHHHHHTCCEEE
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             9988999768888887199999999976992797


No 61 
>>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:1-22,A:267-440)
Probab=29.34  E-value=37  Score=14.61  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             CCCCEEEEECCCCCCC---C------CCHHHHHH-H-HCCCEE---EEECCCCCC
Q ss_conf             7873899807720000---3------51789999-8-689879---997278886
Q gi|254780202|r   83 KEGRYCVLTGGEPLLQ---V------DVPLIQAL-N-KRGFEI---AVETNGTIE  123 (211)
Q Consensus        83 ~~~~~VviTGGEPllq---~------l~~L~~~l-~-~~g~~v---~IETnGt~~  123 (211)
                      ...+.+.|.||||...   +      .-+|.=.+ . -.+..+   ..-|-|.-=
T Consensus        74 ~~~P~~li~GGEtTVtv~G~~G~GGRNQElaL~~a~~l~~~~~~~LsagTDG~DG  128 (196)
T 1x3l_A           74 FEPPVVLVFGGETTVTIEGKGGKGGPNQEIALSATRKISDLEALIVAFDTDGTDG  128 (196)
T ss_dssp             SCSSEEEEEEECCBCCCSSSCCSCCHHHHHHHHHTTTTTTSEEEEEEEETTSCCS
T ss_pred             CCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             8998599987843799689899885269999999985669987999978578888


No 62 
>>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} (A:1-50,A:206-359,A:513-529)
Probab=29.26  E-value=37  Score=14.60  Aligned_cols=50  Identities=20%  Similarity=0.136  Sum_probs=27.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCC--------------------CCCEEEEECCCCCCCCCCHHHHHHHHC-CCEEE
Q ss_conf             607899999999987521667--------------------873899807720000351789999868-98799
Q gi|254780202|r   63 GRYNVDQLADLIEEQWITGEK--------------------EGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIA  115 (211)
Q Consensus        63 ~~~~~~~i~~~i~~~~~~~~~--------------------~~~~VviTGGEPllq~l~~L~~~l~~~-g~~v~  115 (211)
                      +.++.+++.+.+++......+                    ++=.++++||||+--   .+.+.+++. |.++.
T Consensus       104 ~~~~p~~~l~~i~~~kvT~~~~~Pt~~~~Ll~~~~~~~~~l~sLR~~~sgGe~lp~---~l~~~~~~~fg~~i~  174 (221)
T 2v7b_A          104 ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPR---EIGERFTAHFGCEIL  174 (221)
T ss_dssp             SCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCH---HHHHHHHHHHSCCEE
T ss_pred             CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCH---HHHHHHHHHCCCEEE
T ss_conf             22232100121012122011022211122222222222343000001346677839---999999975496351


No 63 
>>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} (A:60-137,A:231-275)
Probab=28.60  E-value=38  Score=14.58  Aligned_cols=28  Identities=21%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             CEEEEECCCCCCC--CCCHHHHHHHHCCCE
Q ss_conf             3899807720000--351789999868987
Q gi|254780202|r   86 RYCVLTGGEPLLQ--VDVPLIQALNKRGFE  113 (211)
Q Consensus        86 ~~VviTGGEPllq--~l~~L~~~l~~~g~~  113 (211)
                      ..++.-||.|.+-  ++..|++.|++.|++
T Consensus        22 dLyIkGsGDPtLtse~L~~La~~Lk~~GIr   51 (123)
T 2ex2_A           22 DLVARFGADPTLKRQDIRNMVATLKKSGVN   51 (123)
T ss_dssp             EEEEECCCCTTCCHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             189982689984666899999999971885


No 64 
>>1ad3_A ALDH, aldehyde dehydrogenase (class 3); NADP, oxidoreductase, aromatic aldehyde; HET: NAD; 2.60A {Rattus norvegicus} (A:1-212,A:395-452)
Probab=28.27  E-value=39  Score=14.48  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             38998077200003517899998689879997278886
Q gi|254780202|r   86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        86 ~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      .+|.+||+...-.   .+++...++.-++.+|..|+.+
T Consensus       181 d~I~fTGS~~vG~---~V~~aAA~~l~pv~LELGG~~~  215 (270)
T 1ad3_A          181 DHIMYTGSTAVGK---IVMAAAAKHLTPVTLELGGTVP  215 (270)
T ss_dssp             SEEEEESCHHHHH---HHHHHHHTTTCCEEEECCCGCT
T ss_pred             CEEEEECCHHHHH---HHHHHHHHCCCCEEEECCCCCC
T ss_conf             5589978479999---9999988328968998688768


No 65 
>>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A (A:27-187)
Probab=27.48  E-value=39  Score=14.47  Aligned_cols=45  Identities=9%  Similarity=-0.102  Sum_probs=28.8

Q ss_pred             CCCHHHHHHHHCCCEEEEECCCCCCC-----------CCCCEEEEECCCCCCCCCC
Q ss_conf             35178999986898799972788866-----------7885079841677741001
Q gi|254780202|r   99 VDVPLIQALNKRGFEIAVETNGTIEP-----------PQGIDWICVSPKAGCDLKI  143 (211)
Q Consensus        99 ~l~~L~~~l~~~g~~v~IETnGt~~~-----------~~~~d~it~SPK~~~~~~~  143 (211)
                      ...++++.|+++|+++.+=|||...-           ...++.+....|.......
T Consensus        46 g~~e~l~~L~~~g~~i~i~T~~~~~~~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~  101 (161)
T 2wm8_A           46 EVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFE  101 (161)
T ss_dssp             THHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH
T ss_conf             59999999998897799506785489999999735764267777516765648999


No 66 
>>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=26.85  E-value=30  Score=15.25  Aligned_cols=13  Identities=15%  Similarity=0.759  Sum_probs=10.7

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             6888877575232
Q gi|254780202|r   45 AQCRFCDTDFVGI   57 (211)
Q Consensus        45 ~~C~~CDT~y~~~   57 (211)
                      ..|.+|+.+|+..
T Consensus        14 ~eC~lC~vKYs~r   26 (55)
T 2yrk_A           14 PECTLCGVKYSAR   26 (55)
T ss_dssp             SCCTTTTCCCCSS
T ss_pred             CCCCCCCEEEEEE
T ss_conf             5376325142102


No 67 
>>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} (A:1-12,A:207-384)
Probab=26.73  E-value=41  Score=14.30  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             CCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             517899998689879997278886
Q gi|254780202|r  100 DVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus       100 l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ..++++.|+++|+++.|-||+...
T Consensus        26 ~~e~L~~Lk~~G~~l~ivTn~~~~   49 (190)
T 1qyi_A           26 VKVLLNDLKGAGFELGIATGRPYT   49 (190)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCHH
T ss_pred             HHHHHHHHHHCCCEEEEECCCCHH
T ss_conf             999999999789959991899899


No 68 
>>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A (A:21-240)
Probab=26.42  E-value=42  Score=14.27  Aligned_cols=38  Identities=16%  Similarity=0.125  Sum_probs=29.5

Q ss_pred             CCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCC
Q ss_conf             873899807720000-35178999986898799972788
Q gi|254780202|r   84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus        84 ~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt  121 (211)
                      ....+++||+..+.. ++.++++.|.+.|.++..+-++.
T Consensus        89 ~~~~~~~~g~~~~~~r~~~~~~~~L~~~Ga~v~~~~~~~  127 (220)
T 2o0b_A           89 GSVPVTFDGDQQARGRPIAPLLDALRELGVAVDGTGLPF  127 (220)
T ss_dssp             SSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEECSSSSE
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEECCCCCE
T ss_conf             440264126653110457878776530471575684761


No 69 
>>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:1-194,A:525-678,A:759-784)
Probab=26.35  E-value=42  Score=14.26  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=15.1

Q ss_pred             CCEEEEECCCCCCC-CCC-HHHHHHHHCCCEEEEE
Q ss_conf             73899807720000-351-7899998689879997
Q gi|254780202|r   85 GRYCVLTGGEPLLQ-VDV-PLIQALNKRGFEIAVE  117 (211)
Q Consensus        85 ~~~VviTGGEPllq-~l~-~L~~~l~~~g~~v~IE  117 (211)
                      .+.+.+.|+.|+.+ +.. .+.+.|.+..+-|.++
T Consensus       219 ik~l~~~~~Np~~~~~~~~~~~~al~~~d~~V~~d  253 (374)
T 1kqf_A          219 VTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVID  253 (374)
T ss_dssp             CCEEEEESCCHHHHSSSHHHHHHHHTTCSEEEEEE
T ss_pred             CCEEEEECCCHHHCCCCHHHHHHHHHCCCEEEEEE
T ss_conf             62799847862304858899999973688599973


No 70 
>>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} (A:238-291)
Probab=26.32  E-value=29  Score=15.36  Aligned_cols=24  Identities=25%  Similarity=0.828  Sum_probs=17.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             368888775752325888660789999999998
Q gi|254780202|r   44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE   76 (211)
Q Consensus        44 ~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~   76 (211)
                      .+.|.||-+.|.         ++.+++..++.+
T Consensus        28 ev~C~FC~~~Y~---------f~~~el~~l~~~   51 (54)
T 1vzy_A           28 EAVCHFCNEKYL---------FTKEELEGLRDQ   51 (54)
T ss_dssp             EEECTTTCCEEE---------EEHHHHHHHHHH
T ss_pred             EEEEECCCCEEE---------ECHHHHHHHHHH
T ss_conf             999768799898---------799999999865


No 71 
>>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264)
Probab=25.81  E-value=21  Score=16.30  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=12.9

Q ss_pred             CHHHHHHHHCCCEEEEECCCC
Q ss_conf             178999986898799972788
Q gi|254780202|r  101 VPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus       101 ~~L~~~l~~~g~~v~IETnGt  121 (211)
                      .+.++.|+++|+++.|=||++
T Consensus        27 ~e~l~~l~~~G~~~~i~Tn~s   47 (154)
T 3epr_A           27 ERFIERLQEKGIPYMLVTNNT   47 (154)
T ss_dssp             HHHHHHHHHHTCCEEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEEECCC
T ss_conf             999999998799889993899


No 72 
>>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:1-34,A:262-429)
Probab=25.64  E-value=43  Score=14.17  Aligned_cols=42  Identities=29%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             CCCCEEEEECCCCCCCC--------CCHH----HHHHHH-CCC-EEEEECCCCCCC
Q ss_conf             78738998077200003--------5178----999986-898-799972788866
Q gi|254780202|r   83 KEGRYCVLTGGEPLLQV--------DVPL----IQALNK-RGF-EIAVETNGTIEP  124 (211)
Q Consensus        83 ~~~~~VviTGGEPllq~--------l~~L----~~~l~~-~g~-~v~IETnGt~~~  124 (211)
                      ...+.+.|.||||...-        .-+|    ...+.. .+. -...-|-|.-=+
T Consensus        86 ~~~P~~li~GGEtTV~v~G~G~GGRNQElaL~~a~~l~~~~~v~~LSagTDG~DGp  141 (202)
T 2b8n_A           86 LKKPAALIFGGETVVHVKGNGIGGRNQELALSAAIALEGIEGVILCSAGTDGTDGP  141 (202)
T ss_dssp             SCSSEEEEEEECCBCCCCSCCCCCHHHHHHHHHHHHTTTCTTEEEEEEETTSCCSS
T ss_pred             CCCCEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf             78975799777678870588888853899999999725899979999665788789


No 73 
>>2obb_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:)
Probab=25.36  E-value=44  Score=14.14  Aligned_cols=27  Identities=22%  Similarity=0.156  Sum_probs=13.8

Q ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHCCC
Q ss_conf             87389980772000035178999986898
Q gi|254780202|r   84 EGRYCVLTGGEPLLQVDVPLIQALNKRGF  112 (211)
Q Consensus        84 ~~~~VviTGGEPllq~l~~L~~~l~~~g~  112 (211)
                      +.+.+++||+.-...  ..+++.+...|+
T Consensus        40 G~~i~i~Tn~~~~~~--~~~l~~~~~~~~   66 (142)
T 2obb_A           40 KHRLILWSVREGELL--DEAIEWCRARGL   66 (142)
T ss_dssp             TCEEEECCSCCHHHH--HHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCH--HHHHHHHHHHCC
T ss_conf             993999957887317--999999999599


No 74 
>>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} (A:1-56,A:179-509)
Probab=24.88  E-value=45  Score=14.08  Aligned_cols=60  Identities=15%  Similarity=0.035  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-HHHHHHHHCCCEEEEECCC
Q ss_conf             886607899999999987521667873899807720000351-7899998689879997278
Q gi|254780202|r   60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG  120 (211)
Q Consensus        60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~-~L~~~l~~~g~~v~IETnG  120 (211)
                      .....++++...+.+++.....+... .+....+.|..+.+. .+.+.|++.|+++.+++--
T Consensus       199 ~~~~~~d~~kAk~lL~eaGy~~g~~~-~l~~~~~~~~~~~~a~~i~~~L~~vGi~v~v~~~~  259 (387)
T 1uqw_A          199 YKPWPYDPVKARELLKEAGYPNGFST-TLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAXD  259 (387)
T ss_dssp             CCCCCCCHHHHHHHHHHHTCTTCEEE-EEEEECCSSSHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             78888899999999885312222222-11122223315689999999997466424899806


No 75 
>>3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD superfamily, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:1-19,A:105-234)
Probab=24.63  E-value=45  Score=14.05  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=35.9

Q ss_pred             EEEEECCCCC-CCC-CCHHHHHHHHCC-CEEEEECCCCCC----------CCCCCEEEEECCCCCCCCCCCCHH
Q ss_conf             8998077200-003-517899998689-879997278886----------678850798416777410012123
Q gi|254780202|r   87 YCVLTGGEPL-LQV-DVPLIQALNKRG-FEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQ  147 (211)
Q Consensus        87 ~VviTGGEPl-lq~-l~~L~~~l~~~g-~~v~IETnGt~~----------~~~~~d~it~SPK~~~~~~~~~~~  147 (211)
                      .|.+....-| +++ ..++++.|+++| +++.|=|||...          +...+|-+..++|..-+.......
T Consensus        10 ~~~~~~~~~~~l~pg~~e~L~~Lk~~g~~~l~ivTn~~~~~~~~~l~~~gl~~~F~~i~~~~kp~p~~~~~a~~   83 (149)
T 3ddh_A           10 VIAFDADDTLELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSPYFDHIEVXSDKTEKEYLRLLS   83 (149)
T ss_dssp             EEEECCBTTTCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99997889784676169999886503303420334430666655677652200012211123688799999998


No 76 
>>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} (A:95-251)
Probab=24.27  E-value=24  Score=15.92  Aligned_cols=82  Identities=17%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             EEECCCCCCCCCCCCE--EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             7751055840137315--99976898887555333323688887757523258886607899999999987521667873
Q gi|254780202|r    9 IFLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR   86 (211)
Q Consensus         9 iF~SiQGEG~~~G~p~--vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~   86 (211)
                      ++.++.||....|...  .++|-.|+++                  .|.      +...+.+++.+.+.+.      ...
T Consensus         8 ll~~~~gd~H~lGl~~va~~l~~~G~~V------------------~~l------G~~~p~e~~~~~~~~~------~pd   57 (157)
T 3bul_A            8 VIATVKGDVHDIGKNIVGVVLQCNNYEI------------------VDL------GVMVPAEKILRTAKEV------NAD   57 (157)
T ss_dssp             EEEEBTTCCCCHHHHHHHHHHHTTTCEE------------------EEC------CSSBCHHHHHHHHHHH------TCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCEEE------------------EEE------CCCCCHHHHHHHHHHH------CCC
T ss_conf             9995588712688899999998689479------------------940------3789999999999971------997


Q ss_pred             EEEEECCCC-CCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf             899807720-0003517899998689879997278
Q gi|254780202|r   87 YCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG  120 (211)
Q Consensus        87 ~VviTGGEP-llq~l~~L~~~l~~~g~~v~IETnG  120 (211)
                      .|.||---+ .+.....+++.+++.+..+.+=--|
T Consensus        58 ~V~iS~~~~~~~~~~~~~~~~lr~~~~~~~i~vgG   92 (157)
T 3bul_A           58 LIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGG   92 (157)
T ss_dssp             EEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEEES
T ss_pred             EEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             89998630410899999999999629875288733


No 77 
>>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii} (A:98-149)
Probab=24.21  E-value=20  Score=16.40  Aligned_cols=13  Identities=15%  Similarity=0.626  Sum_probs=10.1

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3688887757523
Q gi|254780202|r   44 SAQCRFCDTDFVG   56 (211)
Q Consensus        44 ~~~C~~CDT~y~~   56 (211)
                      ..+|.|||+.+..
T Consensus        36 ~lrC~YCe~~~~~   48 (52)
T 2yww_A           36 KIRCYYCEKFLNE   48 (52)
T ss_dssp             EEEETTTCCBCSS
T ss_pred             EEEEECCCCCCHH
T ss_conf             9980789989112


No 78 
>>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} (A:135-248)
Probab=24.01  E-value=46  Score=13.97  Aligned_cols=33  Identities=12%  Similarity=0.165  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             8998077200003517899998689879997278886
Q gi|254780202|r   87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      .++|-||..-+.    ....|...|.+|++=+++...
T Consensus        24 v~ViG~g~~a~e----~A~~l~~~g~~Vtii~~~~~~   56 (114)
T 2a87_A           24 IAVIGGGDSAME----EATFLTRFARSVTLVHRRDEF   56 (114)
T ss_dssp             EEEECSSHHHHH----HHHHHTTTCSEEEEECSSSSC
T ss_pred             EEEECCCHHHHH----HHHHHHHCCCEEEEEECCCCC
T ss_conf             999888889999----999999659989999816510


No 79 
>>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} (A:1-26,A:182-309)
Probab=23.44  E-value=47  Score=13.90  Aligned_cols=35  Identities=20%  Similarity=0.483  Sum_probs=17.0

Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             05584013731599976898887555333323688887757
Q gi|254780202|r   13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD   53 (211)
Q Consensus        13 iQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~   53 (211)
                      |.++|...|.+-.+     |.| |...=.-.-.+|++|.+.
T Consensus        42 L~~~~~~~G~R~L~-----Csl-C~teW~~~R~~Cp~CG~~   76 (154)
T 2fiy_A           42 IRQGGKETGLRYLS-----CSL-CACEWHYVRIKCSHCEES   76 (154)
T ss_dssp             EEC----CCEEEEE-----ETT-TCCEEECCTTSCSSSCCC
T ss_pred             EECCCCCCCCEEEE-----CCC-CCCCCCEECCCCCCCCCC
T ss_conf             01367778866887-----799-888552327768499999


No 80 
>>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* (A:83-171,A:394-484)
Probab=23.32  E-value=48  Score=13.89  Aligned_cols=55  Identities=9%  Similarity=-0.011  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-CC-CHHHHHHHHCCCEEEEECCCCC
Q ss_conf             7899999999987521667873899807720000-35-1789999868987999727888
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VD-VPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-~l-~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      +....+.+.++..   ..+..+.+.+.|+.|+.+ +. ..+.+.|++..+-|.++..-|-
T Consensus       111 ~~~~~~~~~i~~~---~~g~ik~l~~~g~Np~~s~p~~~~~~~al~kld~vV~~d~~~te  167 (180)
T 2vpz_A          111 TAIQELIEPMITG---EPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQE  167 (180)
T ss_dssp             CCTTTTTSHHHHC---CSSCCCCEEEESCCHHHHSSCHHHHHHHHHTCSCEEEEESSCCT
T ss_pred             CCHHHHHHHHHCC---CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCH
T ss_conf             3288899999708---87773799997776434333121134410245623641243774


No 81 
>>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:1-26,A:113-258)
Probab=22.69  E-value=49  Score=13.80  Aligned_cols=27  Identities=11%  Similarity=0.017  Sum_probs=19.6

Q ss_pred             CCCC-CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             0003-51789999868987999727888
Q gi|254780202|r   96 LLQV-DVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        96 llq~-l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      .+++ ..++++.|+++|+++.|=||+..
T Consensus        25 ~~~PGv~e~L~~L~~~G~~v~ivTn~~~   52 (172)
T 3iru_A           25 TIIPGWKEVFDKLIAQGIKVGGNTGYGP   52 (172)
T ss_dssp             TBCTTHHHHHHHHHHTTCEEEEECSSCH
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             6757579999999852360899807857


No 82 
>>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} (A:1-50,A:198-362)
Probab=22.62  E-value=49  Score=13.79  Aligned_cols=31  Identities=26%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHCCCEEEE-----ECCC
Q ss_conf             899807720000351789999868987999-----7278
Q gi|254780202|r   87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAV-----ETNG  120 (211)
Q Consensus        87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~I-----ETnG  120 (211)
                      ..+++||+|+-.   .+.+.+.+.|.++.-     ||.+
T Consensus       149 r~i~~gGa~l~~---~l~~~~~~~g~~i~~~YG~TEt~~  184 (215)
T 1v25_A          149 RRLVVGGSAAPR---SLIARFERMGVEVRQGYGLTETSP  184 (215)
T ss_dssp             CEEEECSSCCCH---HHHHHHHHTTCEEEEEEECGGGSS
T ss_pred             EEEEEECCCCCH---HHHHHHHHHCCEEEEECCCCCCCC
T ss_conf             599990688999---999999871987664026554466


No 83 
>>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate transcarbamylase, alanosine, carbamyl phosphate, T-state; HET: AL0; 2.00A {Escherichia coli} (B:94-153)
Probab=22.06  E-value=19  Score=16.66  Aligned_cols=12  Identities=25%  Similarity=1.212  Sum_probs=9.3

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             368888775752
Q gi|254780202|r   44 SAQCRFCDTDFV   55 (211)
Q Consensus        44 ~~~C~~CDT~y~   55 (211)
                      .++|.|||..++
T Consensus        42 ~lrC~YCe~~~~   53 (60)
T 2air_B           42 ALKCKYCEKEFS   53 (60)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEEECCCCCCC
T ss_conf             899478897914


No 84 
>>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306)
Probab=21.91  E-value=51  Score=13.70  Aligned_cols=59  Identities=14%  Similarity=0.090  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             6078999999999875216678738998077200003517899998689879997278886
Q gi|254780202|r   63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        63 ~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ..++.+++.+.++....... ....+..-+.+|. -...++++.|+++|+++.|=||++..
T Consensus         7 ~~l~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~-~g~~e~L~~L~~~g~~~~ivTn~~~~   65 (166)
T 2oyc_A            7 ERLRGAALRDVLGRAQGVLF-DCDGVLWNGERAV-PGAPELLERLARAGKAALFVSNNSRR   65 (166)
T ss_dssp             EECCHHHHHHHHHHCSEEEE-CSBTTTEETTEEC-TTHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CCCCHHHHHHHHHCCCEEEE-ECCCCEEECCCCC-CHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             22898789999967999999-6988128899168-10999999999779988999589999


No 85 
>>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240)
Probab=21.69  E-value=51  Score=13.67  Aligned_cols=32  Identities=22%  Similarity=0.195  Sum_probs=23.3

Q ss_pred             ECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             07720000351789999868987999727888
Q gi|254780202|r   91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        91 TGGEPllq~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      |.--++.--..++++.|+++|+++.|=||+..
T Consensus        18 ~~~~~l~pGv~e~L~~Lk~~G~~l~i~Tn~~~   49 (152)
T 2hi0_A           18 TIKTGPFPGILDLXKNLRQKGVKLAVVSNKPN   49 (152)
T ss_dssp             CSSCEECTTHHHHHHHHHHTTCEEEEEEEEEH
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             80376778546899998641245211356736


No 86 
>>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250)
Probab=21.47  E-value=44  Score=14.14  Aligned_cols=31  Identities=10%  Similarity=0.188  Sum_probs=17.0

Q ss_pred             ECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             07720000351789999868987999727888
Q gi|254780202|r   91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        91 TGGEPllq~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      .|++|.-. ..+.++.|++.|+++.|=||.+.
T Consensus        16 ~~~~~~~~-~~e~i~~l~~~G~~~~i~Tn~s~   46 (144)
T 2c4n_A           16 HDNVAVPG-AAEFLHGIMDKGLPLVLLTNYPS   46 (144)
T ss_dssp             ETTEECTT-HHHHHHHHHHTTCCEEEEESCCS
T ss_pred             ECCCCCHH-HHHHHHHHHHCCCCEEEEECCCC
T ss_conf             79986821-99999999977995899928998


No 87 
>>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235)
Probab=21.42  E-value=52  Score=13.63  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=24.7

Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             899807720000351789999868987999727888
Q gi|254780202|r   87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      .|++.-=.-+.-...++++.|+++|+++.|=||++.
T Consensus         6 ~~~~~~~~~l~pgv~e~L~~L~~~G~~l~i~TN~~~   41 (150)
T 2om6_A            6 LVTFDVWNTVLEGTKEALQFVKERGLKTAVIGNVXF   41 (150)
T ss_dssp             EEEECCBTTBCTTHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             898838898586789999999871881433115776


No 88 
>>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/beta/alpha) sandwich; NMR {Escherichia coli CFT073} (A:)
Probab=21.16  E-value=44  Score=14.09  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=24.6

Q ss_pred             EEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             8998077200003-51789999868987999
Q gi|254780202|r   87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        87 ~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      .+.+|+...|.+. .....+.|.++||..++
T Consensus        56 ~l~L~~~kkLA~ad~~~V~~~L~~qGfyLQm   86 (110)
T 2h7a_A           56 ILPLDGRKKLVNADIEKVKQALTEQGYYLQL   86 (110)
T ss_dssp             EECSSSCCCCSSSCHHHHHHHHHHTSEEEEC
T ss_pred             EEECCCCCHHHCCCHHHHHHHHHHCCEEEEC
T ss_conf             9712886612119899999999868878978


No 89 
>>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, allosteric, holoenzyme; 2.85A {Moritella profunda} (D:99-153)
Probab=21.15  E-value=20  Score=16.45  Aligned_cols=12  Identities=25%  Similarity=1.118  Sum_probs=9.0

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             368888775752
Q gi|254780202|r   44 SAQCRFCDTDFV   55 (211)
Q Consensus        44 ~~~C~~CDT~y~   55 (211)
                      .+||.|||..|.
T Consensus        36 ~lrC~YCe~~~~   47 (55)
T 2be7_D           36 GLKCKYCEKTFS   47 (55)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEEECCCCCCC
T ss_conf             899168997925


No 90 
>>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.97  E-value=26  Score=15.71  Aligned_cols=11  Identities=36%  Similarity=1.084  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCC
Q ss_conf             36888877575
Q gi|254780202|r   44 SAQCRFCDTDF   54 (211)
Q Consensus        44 ~~~C~~CDT~y   54 (211)
                      ...|+|||.-|
T Consensus         9 A~KCPyCd~~F   19 (37)
T 2elp_A            9 AMKCPYCDFYF   19 (37)
T ss_dssp             CEECSSSSCEE
T ss_pred             CCCCCCCHHHH
T ss_conf             31487304788


No 91 
>>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima} (A:245-302)
Probab=20.71  E-value=54  Score=13.54  Aligned_cols=27  Identities=22%  Similarity=0.677  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             236888877575232588866078999999999875
Q gi|254780202|r   43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW   78 (211)
Q Consensus        43 ~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~   78 (211)
                      -.+.|.||-+.|.         ++.+++..++.+..
T Consensus        27 iev~C~fC~~~Y~---------f~~~el~~l~~~~~   53 (58)
T 1vq0_A           27 GEVVCKWCNTRYV---------FSEEELEELLKFKV   53 (58)
T ss_dssp             EEEECTTTCCEEE---------ECHHHHHHHHHHHH
T ss_pred             EEEEEECCCCEEE---------ECHHHHHHHHHHCC
T ss_conf             3999989899798---------69999999997425


No 92 
>>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} (A:1-12,A:99-220)
Probab=20.59  E-value=54  Score=13.52  Aligned_cols=23  Identities=17%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             CHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             17899998689879997278886
Q gi|254780202|r  101 VPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus       101 ~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      .++++.|+++|+++.|=||+...
T Consensus        15 ~~~L~~Lk~~g~~i~i~Tn~~~~   37 (134)
T 2zg6_A           15 LEFLEGLKSNGYKLALVSNASPR   37 (134)
T ss_dssp             HHHHHHHHTTTCEEEECCSCHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99999855122010000475321


No 93 
>>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm, detoxification, magnesium, metal-binding, peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* (A:1-16,A:101-227)
Probab=20.52  E-value=54  Score=13.51  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=25.1

Q ss_pred             ECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             077200003-517899998689879997278886
Q gi|254780202|r   91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        91 TGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      .|--.|+++ ..++++.|+++|+++.|=||+...
T Consensus        11 ~~~~~~~~pgv~e~L~~L~~~g~~i~i~Tn~~~~   44 (143)
T 3i28_A           11 DGVLALINRPMLQAALMLRKKGFTTAILTNTWLD   44 (143)
T ss_dssp             BTTTEEECHHHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred             CCCEECCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9971758804999999999779949998189632


No 94 
>>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:95-178)
Probab=20.41  E-value=54  Score=13.50  Aligned_cols=44  Identities=11%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHH------HHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEE
Q ss_conf             607899999999------98752166787389980772000035-178999986898799
Q gi|254780202|r   63 GRYNVDQLADLI------EEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA  115 (211)
Q Consensus        63 ~~~~~~~i~~~i------~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~  115 (211)
                      ..++.++|.+.-      .++...+         -..||+++.. ..+.+.+++.|+.+.
T Consensus        22 ~dlt~~ei~~lTGLs~~~A~~A~~R---------e~SEp~~w~~~e~f~~~l~~~G~~~~   72 (84)
T 2zos_A           22 GNSTKEEIEKFTGXPPELVPLAXER---------EYSETIFEWSRDGWEEVLVEGGFKVT   72 (84)
T ss_dssp             GGSCHHHHHHHHCCCTTTHHHHHCC---------SSCEEEEECSSSCHHHHHHHTTCEEE
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf             2022888866515876778999874---------41387765567789887764272687


No 95 
>>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} (A:152-269)
Probab=20.25  E-value=55  Score=13.47  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=36.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECC---------CCCCCC--CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             78999999999875216678738998077---------200003--51789999868987999727888
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGG---------EPLLQV--DVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG---------EPllq~--l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      -+.+++...|+.....+ ....-+.++||         .|.+-.  +..+++..++.|++|.+.++|-.
T Consensus        13 ~~~~~~~~~vk~~~~~g-~d~ik~~~~~~~~~~~~~~~~~~~~~eel~~~v~~A~~~G~~v~~Ha~g~~   80 (118)
T 3gnh_A           13 DSPDEARKAVRTLKKYG-AQVIXICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGAS   80 (118)
T ss_dssp             CSHHHHHHHHHHHHHTT-CSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHH
T ss_pred             CCHHHHHHHHHHHHHHC-CHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHH
T ss_conf             30999999999877522-103333202444433346655557899999999999970990788516505


No 96 
>>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} (A:)
Probab=20.22  E-value=55  Score=13.47  Aligned_cols=31  Identities=32%  Similarity=0.321  Sum_probs=18.7

Q ss_pred             EEEECCCC-CCCCC-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             47751055-84013-----73159997689888755533332368888775
Q gi|254780202|r    8 EIFLTLQG-EGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT   52 (211)
Q Consensus         8 EiF~SiQG-EG~~~-----G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT   52 (211)
                      ++-+.+|. .|.-+     =-..+.|||.|.              |..|=|
T Consensus        15 ~irp~l~~~dGGdielv~v~~~~V~V~l~Ga--------------C~gCpT   51 (74)
T 1th5_A           15 EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGP--------------AAVVRT   51 (74)
T ss_dssp             TTHHHHTTTTCCCCCCCEEETTEEEECCCSS--------------SSSSSS
T ss_pred             HHCHHHHHCCCCEEEEEEECCCEEEEEECCC--------------CCCCHH
T ss_conf             8563040268971999995299999995588--------------765405


Done!