Query gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 211 No_of_seqs 111 out of 1224 Neff 7.0 Searched_HMMs 33803 Date Mon May 23 13:27:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780202.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3c8f_A Pyruvate formate-lyase 99.5 2E-12 5.9E-17 104.6 13.9 123 5-139 1-134 (245) 2 >1tv8_A MOAA, molybdenum cofac 99.0 2.1E-08 6.2E-13 77.3 12.4 101 25-139 16-131 (313) 3 >2z2u_A UPF0026 protein MJ0257 98.8 6.9E-08 2E-12 73.8 10.9 53 84-136 128-184 (311) 4 >2yx0_A Radical SAM enzyme; pr 98.6 1.2E-06 3.6E-11 65.4 12.7 108 21-139 69-206 (342) 5 >3can_A Pyruvate-formate lyase 98.5 4.4E-07 1.3E-11 68.4 8.2 57 84-140 3-67 (182) 6 >2a5h_A L-lysine 2,3-aminomuta 98.3 5.2E-06 1.5E-10 61.1 8.9 79 29-122 28-111 (248) 7 >3iix_A Biotin synthetase, put 98.2 1.9E-05 5.8E-10 57.2 10.8 101 23-140 53-165 (348) 8 >1r30_A Biotin synthase; SAM r 98.2 1.3E-05 3.7E-10 58.5 8.5 102 22-137 65-179 (369) 9 >1olt_A Oxygen-independent cop 97.4 0.0083 2.5E-07 39.4 12.3 111 19-140 49-176 (364) 10 >2qgq_A Protein TM_1862; alpha 95.6 0.038 1.1E-06 34.9 6.3 78 22-116 3-89 (112) 11 >1rf6_A 5-enolpyruvylshikimate 82.3 2.9 8.6E-05 22.1 5.0 40 84-123 26-66 (141) 12 >2pqc_A 3-phosphoshikimate 1-c 77.7 3.6 0.00011 21.5 4.3 40 85-124 27-67 (146) 13 >2qbu_A Precorrin-2 methyltran 68.1 9 0.00026 18.8 5.0 47 67-116 80-127 (131) 14 >3kwp_A Predicted methyltransf 65.8 7.9 0.00023 19.2 3.8 48 66-116 74-122 (125) 15 >2jvm_A Uncharacterized protei 65.4 3.4 0.0001 21.7 1.8 35 11-56 29-65 (80) 16 >3f8d_A Thioredoxin reductase 65.1 2.4 7.2E-05 22.6 1.0 32 85-116 45-76 (114) 17 >1wde_A Probable diphthine syn 62.9 11 0.00033 18.2 4.9 35 82-116 81-116 (120) 18 >1wyz_A Putative S-adenosylmet 62.0 12 0.00034 18.0 5.2 50 64-116 67-117 (120) 19 >3hh1_A Tetrapyrrole methylase 61.8 12 0.00034 18.0 6.1 51 64-117 62-114 (117) 20 >2e0n_A Precorrin-2 C20-methyl 61.7 8.2 0.00024 19.1 3.2 34 84-117 96-130 (133) 21 >1s4d_A Uroporphyrin-III C-met 61.5 12 0.00035 18.0 6.3 50 64-116 75-125 (130) 22 >1cbf_A Cobalt-precorrin-4 tra 60.8 12 0.00036 17.9 5.3 49 65-116 77-126 (130) 23 >1va0_A Uroporphyrin-III C-met 60.7 12 0.00036 17.9 4.3 35 84-118 75-110 (120) 24 >2e7z_A Acetylene hydratase AH 58.6 13 0.00039 17.7 4.2 55 64-121 96-152 (166) 25 >2z6r_A Diphthine synthase; me 57.9 14 0.0004 17.6 5.6 36 83-118 76-112 (122) 26 >1ve2_A Uroporphyrin-III C-met 57.9 14 0.0004 17.6 5.3 50 64-116 61-111 (115) 27 >1pjq_A CYSG, siroheme synthas 55.8 7.2 0.00021 19.5 2.1 33 84-116 81-114 (118) 28 >1vhv_A Diphthine synthase; st 53.6 14 0.00041 17.5 3.3 34 84-117 87-121 (132) 29 >3c6f_A YETF protein; uncharac 53.5 7.5 0.00022 19.3 1.9 42 85-126 15-70 (81) 30 >2npn_A Putative cobalamin syn 53.5 16 0.00047 17.1 5.4 46 68-116 89-138 (142) 31 >3etc_A AMP-binding protein; a 51.8 15 0.00045 17.2 3.2 50 62-114 132-201 (233) 32 >3gl5_A Putative DSBA oxidored 50.9 17 0.00051 16.8 4.2 68 40-107 6-93 (106) 33 >3c6f_A YETF protein; uncharac 49.5 18 0.00053 16.8 3.3 42 84-125 9-64 (72) 34 >2jrr_A Uncharacterized protei 49.5 5.5 0.00016 20.2 0.7 36 12-57 17-53 (67) 35 >2r48_A Phosphotransferase sys 43.0 14 0.0004 17.6 1.9 24 102-125 24-47 (106) 36 >3fbs_A Oxidoreductase; struct 42.6 14 0.00041 17.5 1.9 63 45-114 9-71 (101) 37 >2p9b_A Possible prolidase; pr 41.9 24 0.0007 15.9 5.1 59 65-124 18-89 (175) 38 >2jz8_A Uncharacterized protei 41.7 14 0.00042 17.5 1.8 28 21-58 35-62 (87) 39 >1pg5_B Aspartate carbamoyltra 39.7 18 0.00053 16.8 2.0 11 44-54 37-47 (62) 40 >2zvb_A Precorrin-3 C17-methyl 39.6 26 0.00076 15.7 3.1 47 66-115 59-106 (131) 41 >2w19_A 3-deoxy-D-arabino-hept 38.9 26 0.00078 15.6 4.5 54 60-114 316-371 (472) 42 >1njh_A Protein YOJF; structur 38.8 12 0.00034 18.1 1.0 26 100-125 12-38 (119) 43 >1zjj_A Hypothetical protein P 37.1 21 0.00061 16.4 2.0 32 90-122 13-44 (131) 44 >2hx1_A Predicted sugar phosph 36.7 19 0.00055 16.6 1.8 31 91-122 27-57 (162) 45 >2yvw_A UDP-N-acetylglucosamin 36.2 29 0.00086 15.3 3.6 36 86-121 87-123 (208) 46 >2qs8_A XAA-Pro dipeptidase; a 34.1 31 0.00092 15.1 5.2 58 65-123 15-83 (119) 47 >1vjr_A 4-nitrophenylphosphata 33.3 32 0.00095 15.0 4.1 34 88-122 27-60 (145) 48 >2r4q_A Phosphotransferase sys 33.2 20 0.0006 16.4 1.5 24 101-124 23-46 (106) 49 >2zxe_B Na+,K+-ATPase beta sub 33.0 15 0.00046 17.2 0.8 10 128-137 141-150 (236) 50 >2fi1_A Hydrolase, haloacid de 32.7 33 0.00097 15.0 3.2 36 87-123 9-44 (124) 51 >1g6s_A EPSP synthase; two-dom 32.6 33 0.00097 15.0 5.1 40 83-122 88-128 (223) 52 >1w5d_A Penicillin-binding pro 32.6 33 0.00098 15.0 2.7 30 84-113 20-51 (125) 53 >3a3d_A PBP4, penicillin-bindi 32.1 34 0.00099 14.9 2.6 30 84-113 20-51 (121) 54 >2yvw_A UDP-N-acetylglucosamin 31.9 20 0.0006 16.4 1.3 31 90-120 25-60 (68) 55 >3llv_A Exopolyphosphatase-rel 31.6 34 0.001 14.9 2.9 33 84-119 5-38 (141) 56 >3feq_A Putative amidohydrolas 31.4 35 0.001 14.8 4.7 58 65-123 36-104 (140) 57 >1w79_A D-alanyl-D-alanine car 30.7 35 0.001 14.8 2.6 29 85-113 21-51 (129) 58 >3d6j_A Putative haloacid deha 30.6 36 0.0011 14.7 2.4 25 99-123 28-52 (160) 59 >2ho4_A Haloacid dehalogenase- 30.4 36 0.0011 14.7 3.0 22 101-122 29-50 (140) 60 >3i4t_A Diphthine synthase; ni 29.4 37 0.0011 14.6 3.0 33 84-116 95-128 (140) 61 >1x3l_A Hypothetical protein P 29.3 37 0.0011 14.6 3.3 41 83-123 74-128 (196) 62 >2v7b_A Benzoate-coenzyme A li 29.3 37 0.0011 14.6 3.3 50 63-115 104-174 (221) 63 >2ex2_A Penicillin-binding pro 28.6 38 0.0011 14.6 2.2 28 86-113 22-51 (123) 64 >1ad3_A ALDH, aldehyde dehydro 28.3 39 0.0011 14.5 5.2 35 86-123 181-215 (270) 65 >2wm8_A MDP-1, magnesium-depen 27.5 39 0.0012 14.5 2.1 45 99-143 46-101 (161) 66 >2yrk_A Zinc finger homeobox p 26.9 30 0.00089 15.3 1.5 13 45-57 14-26 (55) 67 >1qyi_A ZR25, hypothetical pro 26.7 41 0.0012 14.3 3.2 24 100-123 26-49 (190) 68 >2o0b_A 3-phosphoshikimate 1-c 26.4 42 0.0012 14.3 3.6 38 84-121 89-127 (220) 69 >1kqf_A FDH-N, formate dehydro 26.3 42 0.0012 14.3 3.7 33 85-117 219-253 (374) 70 >1vzy_A 33 kDa chaperonin; cha 26.3 29 0.00085 15.4 1.3 24 44-76 28-51 (54) 71 >3epr_A Hydrolase, haloacid de 25.8 21 0.00062 16.3 0.5 21 101-121 27-47 (154) 72 >2b8n_A Glycerate kinase, puta 25.6 43 0.0013 14.2 3.3 42 83-124 86-141 (202) 73 >2obb_A Hypothetical protein; 25.4 44 0.0013 14.1 2.9 27 84-112 40-66 (142) 74 >1uqw_A Putative binding prote 24.9 45 0.0013 14.1 5.3 60 60-120 199-259 (387) 75 >3ddh_A Putative haloacid deha 24.6 45 0.0013 14.0 2.5 61 87-147 10-83 (149) 76 >3bul_A Methionine synthase; t 24.3 24 0.00071 15.9 0.6 82 9-120 8-92 (157) 77 >2yww_A Aspartate carbamoyltra 24.2 20 0.0006 16.4 0.2 13 44-56 36-48 (52) 78 >2a87_A TRXR, TR, thioredoxin 24.0 46 0.0014 14.0 2.9 33 87-123 24-56 (114) 79 >2fiy_A Protein FDHE homolog; 23.4 47 0.0014 13.9 2.3 35 13-53 42-76 (154) 80 >2vpz_A Thiosulfate reductase; 23.3 48 0.0014 13.9 3.8 55 65-122 111-167 (180) 81 >3iru_A Phoshonoacetaldehyde h 22.7 49 0.0014 13.8 3.1 27 96-122 25-52 (172) 82 >1v25_A Long-chain-fatty-acid- 22.6 49 0.0015 13.8 4.6 31 87-120 149-184 (215) 83 >2air_B Aspartate carbamoyltra 22.1 19 0.00055 16.7 -0.4 12 44-55 42-53 (60) 84 >2oyc_A PLP phosphatase, pyrid 21.9 51 0.0015 13.7 3.1 59 63-123 7-65 (166) 85 >2hi0_A Putative phosphoglycol 21.7 51 0.0015 13.7 2.5 32 91-122 18-49 (152) 86 >2c4n_A Protein NAGD; nucleoti 21.5 44 0.0013 14.1 1.4 31 91-122 16-46 (144) 87 >2om6_A Probable phosphoserine 21.4 52 0.0015 13.6 4.8 36 87-122 6-41 (150) 88 >2h7a_A Hypothetical protein Y 21.2 44 0.0013 14.1 1.4 30 87-116 56-86 (110) 89 >2be7_D Aspartate carbamoyltra 21.1 20 0.00059 16.5 -0.4 12 44-55 36-47 (55) 90 >2elp_A Zinc finger protein 40 21.0 26 0.00076 15.7 0.2 11 44-54 9-19 (37) 91 >1vq0_A 33 kDa chaperonin; TM1 20.7 54 0.0016 13.5 2.0 27 43-78 27-53 (58) 92 >2zg6_A Putative uncharacteriz 20.6 54 0.0016 13.5 2.6 23 101-123 15-37 (134) 93 >3i28_A Epoxide hydrolase 2; a 20.5 54 0.0016 13.5 3.3 33 91-123 11-44 (143) 94 >2zos_A MPGP, mannosyl-3-phosp 20.4 54 0.0016 13.5 2.3 44 63-115 22-72 (84) 95 >3gnh_A L-lysine, L-arginine c 20.3 55 0.0016 13.5 5.9 57 65-122 13-80 (118) 96 >1th5_A NIFU1; iron-sulfur clu 20.2 55 0.0016 13.5 2.1 31 8-52 15-51 (74) No 1 >>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:) Probab=99.47 E-value=2e-12 Score=104.64 Aligned_cols=123 Identities=21% Similarity=0.302 Sum_probs=97.8 Q ss_pred CEEEEEECCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 1244775105584013731599976-898887555333323688887757523258886607899999999987521667 Q gi|254780202|r 5 SIKEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 (211) Q Consensus 5 ~i~EiF~SiQGEG~~~G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 83 (211) ||.|+|+++|+++.+.|.+.+++.+ .|||+ +|.||++...+ .......++.+++...++++...... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~i~~t~~Cn~-----------~C~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (245) T 3c8f_A 1 SVIGRIHSFESCGTVDGPGIRFITFFQGCLM-----------RCLYCHNRDTW-DTHGGKEVTVEDLMKEVVTYRHFMNA 68 (245) T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEESCCSC-----------CCTTCSCGGGC-CTTCSEEECHHHHHHHHGGGHHHHTS T ss_pred CCEEEEEEEEEEEEEECCCCEEEEECCCCCC-----------CCCCCCCHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 9258984789940682797289998689688-----------79899980331-86799178899999999999998515 Q ss_pred CCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCCCCC--------CCEEEEECCCCCC Q ss_conf 8738998077200003--517899998689879997278886678--------8507984167774 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVSPKAGC 139 (211) Q Consensus 84 ~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~~~~--------~~d~it~SPK~~~ 139 (211) ....+.++||||+++. +..|.+.+++.|..+.+.|||+..... ..+.+.+|-.... T Consensus 69 ~~~~~~~~gGep~l~~~~~~~l~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 134 (245) T 3c8f_A 69 SGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMN 134 (245) T ss_dssp TTCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSS T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 886687156774426789999999988635714661377311445556542133210114500100 No 2 >>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313) Probab=98.96 E-value=2.1e-08 Score=77.34 Aligned_cols=101 Identities=27% Similarity=0.296 Sum_probs=67.4 Q ss_pred EEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC Q ss_conf 9997-689888755533332368888775752325----88866078999999999875216678738998077200003 Q gi|254780202|r 25 VFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 (211) Q Consensus 25 vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~ 99 (211) ++|- ..|||+ +|.||........ ......++.+++.+.+.+... .....|.++||||++++ T Consensus 16 ~~i~~t~~Cn~-----------~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~GGEP~l~~ 81 (313) T 1tv8_A 16 LRLSVTDRCNF-----------RCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE---LGVKKIRITGGEPLMRR 81 (313) T ss_dssp EEEECCSCCSC-----------CCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH---TTCCEEEEESSCGGGST T ss_pred EEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCCCCCCC T ss_conf 79984240178-----------79688975006777765761035899999999999997---69819974798400261 Q ss_pred -CCHHHHHHHHCC-C-EEEEECCCCCC-------CCCCCEEEEECCCCCC Q ss_conf -517899998689-8-79997278886-------6788507984167774 Q gi|254780202|r 100 -DVPLIQALNKRG-F-EIAVETNGTIE-------PPQGIDWICVSPKAGC 139 (211) Q Consensus 100 -l~~L~~~l~~~g-~-~v~IETnGt~~-------~~~~~d~it~SPK~~~ 139 (211) +.+++..+++.+ . .+.+.|||... .....+.+.+|..... T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~isi~~~~ 131 (313) T 1tv8_A 82 DLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAID 131 (313) T ss_dssp THHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSS T ss_pred HHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCC T ss_conf 06999998640254431001333123406899999839998872255788 No 3 >>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:) Probab=98.81 E-value=6.9e-08 Score=73.85 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=38.5 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCC---CCCCCEEEEECCC Q ss_conf 8738998077200003-517899998689879997278886---6788507984167 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE---PPQGIDWICVSPK 136 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~---~~~~~d~it~SPK 136 (211) ....+.++||||++++ +.+++..+++.|+.+.|.|||+.. ....++.+.+|-. T Consensus 128 ~~~~~~~~GGepll~~~~~~~~~~~~~~~~~~~i~TNG~~~~~~~~~~l~~~~is~~ 184 (311) T 2z2u_A 128 PKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIEPTQLYISLD 184 (311) T ss_dssp CCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHCCCSEEEEECC T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHEEECCCCCHHHHHHCCCCEEEEEEC T ss_conf 757998158874100279999999863030210000554236776236616898735 No 4 >>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:) Probab=98.63 E-value=1.2e-06 Score=65.38 Aligned_cols=108 Identities=20% Similarity=0.186 Sum_probs=71.6 Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCC---------------- Q ss_conf 731599976-89888755533332368888775752325--88866078999999999875216---------------- Q gi|254780202|r 21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQWITG---------------- 81 (211) Q Consensus 21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~--~~~~~~~~~~~i~~~i~~~~~~~---------------- 81 (211) +...+++-+ .|||+ +|.||.....+.. .......+.+++.+.+.++.... T Consensus 69 ~~~~~~i~~t~gCn~-----------~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (342) T 2yx0_A 69 HRCLQMTPVLAWCTH-----------NCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFE 137 (342) T ss_dssp GGEEEEESCSSCCSB-----------CCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHH T ss_pred CCEEEEEECCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 444887684125277-----------798899988777775554555798999999999999987653267530267777 Q ss_pred --CCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCC--------CCCCCEEEEECCCCCC Q ss_conf --678738998077200003-517899998689879997278886--------6788507984167774 Q gi|254780202|r 82 --EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE--------PPQGIDWICVSPKAGC 139 (211) Q Consensus 82 --~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~--------~~~~~d~it~SPK~~~ 139 (211) ......+..+||||++++ +..+++.++..|..+.+.|||+.. .....|++.+|-.... T Consensus 138 ~~~~~~~~~~~~~gep~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~~~~~~~~~v~isl~~~~ 206 (342) T 2yx0_A 138 EAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPD 206 (342) T ss_dssp HHTSCCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSS T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 514875799946877545440999999998639728995488772589998864257757996278999 No 5 >>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:) Probab=98.54 E-value=4.4e-07 Score=68.37 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=46.7 Q ss_pred CCCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCC------CCCCCEEEEECCCCCCC Q ss_conf 8738998077200003--517899998689879997278886------67885079841677741 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE------PPQGIDWICVSPKAGCD 140 (211) Q Consensus 84 ~~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~------~~~~~d~it~SPK~~~~ 140 (211) +.+.|+|||||||+++ +..+++.+++.|+++.+.|||+.+ .....|++.+|-+...+ T Consensus 3 g~~~v~~tGGEPll~~d~i~~i~~~~~~~g~~~~l~Tng~~~~~~~~~~~~~~~~i~isld~~~~ 67 (182) T 3can_A 3 AGGGVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVXRNCELLLIDLKSXDS 67 (182) T ss_dssp -CCCEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCH T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHCCCCCCCHH T ss_conf 99848997133308988999999999877992999725211077777665200000243220038 No 6 >>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342) Probab=98.30 E-value=5.2e-06 Score=61.11 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=55.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC---CCHHHH Q ss_conf 68988875553333236888877575232588866078999999999875216678738998077200003---517899 Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQ 105 (211) Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~---l~~L~~ 105 (211) ..|||+ +|.||.+.+. .+......+.+++.+.+..+.. ..+.+.|++|||||++++ +.+++. T Consensus 28 T~~Cn~-----------~C~~C~~~~~--~~~~~~~~~~e~i~~~~~~~~~--~~~~~~i~~~ggep~~~~~~~~~~~~~ 92 (248) T 2a5h_A 28 TDXCSX-----------YCRHCTRRRF--AGQSDDSXPXERIDKAIDYIRN--TPQVRDVLLSGGDALLVSDETLEYIIA 92 (248) T ss_dssp ESCCSS-----------CCTTCTTTTT--TTSSSSBCCHHHHHHHHHHHHT--CTTCCEEEEEESCTTSSCHHHHHHHHH T ss_pred CCCCCE-----------ECCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCHHHHHHHHH T ss_conf 143010-----------0451254233--5763342149999999999983--898369998569856268899999999 Q ss_pred HHHHCCCE--EEEECCCCC Q ss_conf 99868987--999727888 Q gi|254780202|r 106 ALNKRGFE--IAVETNGTI 122 (211) Q Consensus 106 ~l~~~g~~--v~IETnGt~ 122 (211) .+++.+.. +.+.|++.. T Consensus 93 ~l~~~~~~~~~~~~~~~~~ 111 (248) T 2a5h_A 93 KLREIPHVEIVRIGSRTPV 111 (248) T ss_dssp HHHTSTTCCEEEEECSHHH T ss_pred HHHHCCCCCEEEEEECCCC T ss_conf 9970899754888705542 No 7 >>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:) Probab=98.24 E-value=1.9e-05 Score=57.23 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=67.1 Q ss_pred CEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC- Q ss_conf 159997-689888755533332368888775752325888660789999999998752166787389980772000035- Q gi|254780202|r 23 VAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 (211) Q Consensus 23 p~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l- 100 (211) +.++|- ..|||+ +|.||...... .......++++++++.++.+.. .....+.++||||++.+. T Consensus 53 ~~~~i~~t~gC~~-----------~C~fC~~~~~~-~~~~~~~~~~e~i~~~i~~~~~---~g~~~~~~~~g~p~~~~~~ 117 (348) T 3iix_A 53 IRAIIEFSNVCRK-----------NCLYCGLRRDN-KNLKRYRMTPEEIVERARLAVQ---FGAKTIVLQSGEDPYXMPD 117 (348) T ss_dssp EEEEEEEECCCSC-----------CCTTCTTCTTC-CSSCCCBCCHHHHHHHHHHHHH---TTCSEEEEEESCCGGGTTH T ss_pred EEEEEEECCCCCC-----------CCCCCCCCCCC-CCCCCEECCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHH T ss_conf 9999987788699-----------89579986668-9865231457889999999997---1882565402652345278 Q ss_pred --CHHHHHHHHCCCEEEEECCCCCCC--------CCCCEEEEECCCCCCC Q ss_conf --178999986898799972788866--------7885079841677741 Q gi|254780202|r 101 --VPLIQALNKRGFEIAVETNGTIEP--------PQGIDWICVSPKAGCD 140 (211) Q Consensus 101 --~~L~~~l~~~g~~v~IETnGt~~~--------~~~~d~it~SPK~~~~ 140 (211) ..+.+.++..+.. +.||++... ...++++.+|.....+ T Consensus 118 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~v~i~les~~~ 165 (348) T 3iix_A 118 VISDIVKEIKKMGVA--VTLSLGEWPREYYEKWKEAGADRYLLRHETANP 165 (348) T ss_dssp HHHHHHHHHHTTSCE--EEEECCCCCHHHHHHHHHHTCCEEECCCBCSCH T ss_pred HHHHHHHHHHCCCHH--CCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCH T ss_conf 888998864012010--023444116899999987426278844442334 No 8 >>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:) Probab=98.17 E-value=1.3e-05 Score=58.49 Aligned_cols=102 Identities=10% Similarity=0.091 Sum_probs=63.6 Q ss_pred CCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC Q ss_conf 3159997-68988875553333236888877575232-588866078999999999875216678738998077200003 Q gi|254780202|r 22 RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 (211) Q Consensus 22 ~p~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~-~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~ 99 (211) .+.+++- ..|||+ +|.||....... .......++++++.+.+..+.. .....|.++||||++.+ T Consensus 65 ~~~~~~~~t~~C~~-----------~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~---~g~~~i~~~gg~~~~~~ 130 (369) T 1r30_A 65 VSTLLSIKTGACPE-----------DCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA---AGSTRFCMGAAWKNPHE 130 (369) T ss_dssp EEEEEEEECSCBSS-----------CCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH---TTCSEEEEEECCSSCCT T ss_pred EEEEEEECCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEEEECCCCCH T ss_conf 98687744899998-----------79229983418999875455787899999999997---39979999873588652 Q ss_pred -CC-HHHHHHHH-CCCEEEEECCCCCCC--------CCCCEEEEECCCC Q ss_conf -51-78999986-898799972788866--------7885079841677 Q gi|254780202|r 100 -DV-PLIQALNK-RGFEIAVETNGTIEP--------PQGIDWICVSPKA 137 (211) Q Consensus 100 -l~-~L~~~l~~-~g~~v~IETnGt~~~--------~~~~d~it~SPK~ 137 (211) .. .+...++. .+....+.||+.... ...++.+.+|... T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~ 179 (369) T 1r30_A 131 RDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT 179 (369) T ss_dssp TTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBS T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCC T ss_conf 6999999999986523844530557789999999984786089753020 No 9 >>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364) Probab=97.35 E-value=0.0083 Score=39.38 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=62.6 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCCCCEEEEECCCCCC Q ss_conf 1373159997689888755533332368888775752325888660789999-999998752166787389980772000 Q gi|254780202|r 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLL 97 (211) Q Consensus 19 ~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i-~~~i~~~~~~~~~~~~~VviTGGEPll 97 (211) .-+.-++++=.-|||. +|.||.....+.............+ .++..............+.++||+|++ T Consensus 49 ~~~~~~~~~~~rGC~~-----------~C~fC~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~g~~~~~~~~~~~~~ 117 (364) T 1olt_A 49 PERPLSLYVHIPFCHK-----------LCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTY 117 (364) T ss_dssp TTSCEEEEEEECEESS-----------CCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGG T ss_pred CCCCEEEEEEECCCCC-----------CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC T ss_conf 9995399997189898-----------88999882565888551999999999999997766389974699974875165 Q ss_pred CC---CCHHHHHHHHCC-----CEEEEECCCCCCC--------CCCCEEEEECCCCCCC Q ss_conf 03---517899998689-----8799972788866--------7885079841677741 Q gi|254780202|r 98 QV---DVPLIQALNKRG-----FEIAVETNGTIEP--------PQGIDWICVSPKAGCD 140 (211) Q Consensus 98 q~---l~~L~~~l~~~g-----~~v~IETnGt~~~--------~~~~d~it~SPK~~~~ 140 (211) .. ...|++.+++.. ....++||+..-- ...++.+.++.....+ T Consensus 118 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~G~~~i~ig~es~~~ 176 (364) T 1olt_A 118 LNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNK 176 (364) T ss_dssp SCHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCH T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH T ss_conf 99999999999999865777662147983499872778999973799879983686867 No 10 >>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112) Probab=95.62 E-value=0.038 Score=34.87 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=54.0 Q ss_pred CCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC- Q ss_conf 31599976-8988875553333236888877575232588866078999999999875216678738998077200003- Q gi|254780202|r 22 RVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 (211) Q Consensus 22 ~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~- 99 (211) .+...|.. -||+- +|.||.+.+.+ ......+++.+++.++.+.. .+.+.+.+++..-..+. T Consensus 3 ~~~~~i~tsRGCp~-----------~C~FC~~~~~~---g~~r~r~~~~v~~ei~~l~~---~g~~~i~~~~~~~~~~~~ 65 (112) T 2qgq_A 3 RPYAYVKISDGCDR-----------GCTFCSIPSFK---GSLRSRSIEDITREVEDLLK---EGKKEIILVAQDTTSYGI 65 (112) T ss_dssp CSEEEEESBCCC---------------------------CCCCBCCHHHHHHHHHHHHH---TTCCEEEEECTTGGGTTH T ss_pred CCEEEEEECCCCCC-----------CCEECEEEEEE---CCEEEECHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCC T ss_conf 85099898679899-----------77557342122---97287099999999999998---799689998503664554 Q ss_pred -------CCHHHHHHHHCCCEEEE Q ss_conf -------51789999868987999 Q gi|254780202|r 100 -------DVPLIQALNKRGFEIAV 116 (211) Q Consensus 100 -------l~~L~~~l~~~g~~v~I 116 (211) +.+|++.+.+.+..+.+ T Consensus 66 ~~~~~~~~~~l~~~~~~~~~~~~~ 89 (112) T 2qgq_A 66 DLYRKQALPDLLRRLNSLNGEFWI 89 (112) T ss_dssp HHHSSCCHHHHHHHHHTSSSSCEE T ss_pred CCCCCCCHHHHHHHHHCCCCCCCC T ss_conf 233443278887655303441101 No 11 >>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} (A:80-220) Probab=82.27 E-value=2.9 Score=22.14 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=34.1 Q ss_pred CCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 873899807720000-3517899998689879997278886 Q gi|254780202|r 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 84 ~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ....+.|||++.+.. ++.+|++.|+..|.++..+.++... T Consensus 26 ~~g~~~i~G~~~l~~Rp~~~l~~~L~~~G~~i~~~~~~~~~ 66 (141) T 1rf6_A 26 ADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLP 66 (141) T ss_dssp CSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEE T ss_pred CCCEECCCCCHHHHCCCCCHHHHHHHHCCCEEEECCCCCCC T ss_conf 14333466886662653201234577428479831355630 No 12 >>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* (A:83-228) Probab=77.74 E-value=3.6 Score=21.50 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.5 Q ss_pred CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 73899807720000-35178999986898799972788866 Q gi|254780202|r 85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 (211) Q Consensus 85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~~ 124 (211) ...+++||++.|.. ++.+|++.|++.|.++..+.++..++ T Consensus 27 ~~~~~i~G~~~l~~Rp~~~l~~~L~~~G~~i~~~~~~~~~~ 67 (146) T 2pqc_A 27 DFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPV 67 (146) T ss_dssp SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEE T ss_pred CCCEECCCCCCCCCCCCCHHHEEEEEECEEEEECCCCCCCE T ss_conf 77331468801474212202100021001675045886777 No 13 >>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} (A:1-131) Probab=68.06 E-value=9 Score=18.81 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 999999999875216678738998077200003-51789999868987999 Q gi|254780202|r 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 67 ~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) .+++.+.+.+.. ......+.++.|.|+++. -..++..+++.|+.+.+ T Consensus 80 ~~~~~~~i~~~~---~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~gi~v~v 127 (131) T 2qbu_A 80 WDSAARMVAAEL---EDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEM 127 (131) T ss_dssp HHHHHHHHHHHH---HTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHHH---HCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE T ss_conf 999999999998---679879998344321113301245554325773699 No 14 >>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} (A:1-125) Probab=65.77 E-value=7.9 Score=19.17 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=31.7 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 8999999999875216678738998077200003-51789999868987999 Q gi|254780202|r 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ..+++.+.+.+... ...--+.++||-|+++. ...|+..+++.|+.+.+ T Consensus 74 ~~~~~~~~i~~~~~---g~~vv~~~~gg~P~~y~~~~~l~~~~~~~g~~vei 122 (125) T 3kwp_A 74 TQERIPQLIAKLKQ---GXQIAQVSDAGXPSISDPGHELVNACIDAHIPVVP 122 (125) T ss_dssp HHHHHHHHHHHHHT---TCEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 16579999999985---99789997688851036699999985187558998 No 15 >>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} (A:) Probab=65.36 E-value=3.4 Score=21.67 Aligned_cols=35 Identities=20% Similarity=0.553 Sum_probs=27.8 Q ss_pred ECCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 510558401373159997689--8887555333323688887757523 Q gi|254780202|r 11 LTLQGEGGHAGRVAVFCRFSG--CNLWSGREQDRLSAQCRFCDTDFVG 56 (211) Q Consensus 11 ~SiQGEG~~~G~p~vFiRl~G--CnL~c~~~~~~~~~~C~~CDT~y~~ 56 (211) .|=.|.|.-.|-|-|||.|.. .+. .|.|||-.|.. T Consensus 29 vaCDGg~gaLGHPrVyi~ld~~~g~~-----------~C~YCg~rfv~ 65 (80) T 2jvm_A 29 VACDGGEGALGHPRVWLSIPHETGFV-----------ECGYCDRRYIH 65 (80) T ss_dssp EEECCCSTTCCCCCEEEECCTTTCEE-----------ECSSSSCEEEE T ss_pred EEECCCCCCCCCCEEEEECCCCCCEE-----------ECCCCCCEEEC T ss_conf 99519999899988978758999869-----------88899885560 No 16 >>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* (A:134-247) Probab=65.15 E-value=2.4 Score=22.63 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=14.2 Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHCCCEEEE Q ss_conf 73899807720000351789999868987999 Q gi|254780202|r 85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 (211) Q Consensus 85 ~~~VviTGGEPllq~l~~L~~~l~~~g~~v~I 116 (211) .+..+++-|.++......+...+...|..+.. T Consensus 45 ~~v~iv~~~~~~~~~~~~~~~~~~~~gi~~~~ 76 (114) T 3f8d_A 45 TKVYLIHRRDTFKAQPIYVETVKKKPNVEFVL 76 (114) T ss_dssp SEEEEECSSSSCCSCHHHHHHHHTCTTEEEEC T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCCEEEEE T ss_conf 33898403664430157899985259879981 No 17 >>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:1-120) Probab=62.88 E-value=11 Score=18.16 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=28.0 Q ss_pred CCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEE Q ss_conf 6787389980772000035-1789999868987999 Q gi|254780202|r 82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAV 116 (211) Q Consensus 82 ~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~I 116 (211) ....+.+.++.|.|+++.. ..|++.+.+.|+.+.+ T Consensus 81 ~~~~~V~~l~~GDP~iy~~~~~l~~~~~~~g~~v~v 116 (120) T 1wde_A 81 ALDAVVAVVTAGDPXVATTHSSLAAEALEAGVAVRY 116 (120) T ss_dssp SSCCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEE T ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE T ss_conf 737995999668986454399999999845896798 No 18 >>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} (A:1-120) Probab=61.96 E-value=12 Score=18.05 Aligned_cols=50 Identities=4% Similarity=0.098 Sum_probs=36.4 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 078999999999875216678738998077200003-51789999868987999 Q gi|254780202|r 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ....+++.+.+.++... ....++++.|.|+++. ...|++.+++.|+.+.+ T Consensus 67 ~~~~~~~~~~~~~~~~~---g~~v~~l~~GDP~~y~~~~~l~~~~~~~gi~v~v 117 (120) T 1wyz_A 67 HTSPEDISGYLKPLAGG---ASXGVISEAGCPAVADPGADVVAIAQRQKLKVIP 117 (120) T ss_dssp SCCHHHHHHHHHHHHTT---CCEEEECC-------CHHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHHHHHHCC---CEEEEEECCCCCEECCHHHHHHHHHHCCCCCCCC T ss_conf 67777666666887539---6399996224310225256533332113422000 No 19 >>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum} (A:) Probab=61.83 E-value=12 Score=18.03 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=33.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEE-EECCCCCCCC-CCHHHHHHHHCCCEEEEE Q ss_conf 07899999999987521667873899-8077200003-517899998689879997 Q gi|254780202|r 64 RYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQV-DVPLIQALNKRGFEIAVE 117 (211) Q Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~~~Vv-iTGGEPllq~-l~~L~~~l~~~g~~v~IE 117 (211) ..+.++..+.+.+.... ..+.++ ++.|.|+++. ...+++.+++.|+++.+- T Consensus 62 ~~~~~~~~~~~~~~~~~---g~~vv~~~~~GDp~~y~~~~~l~~~~~~~~i~vevI 114 (117) T 3hh1_A 62 SFNEERAVRQVIELLEE---GSDVALVTDAGTPAISDPGYTXASAAHAAGLPVVPV 114 (117) T ss_dssp STTHHHHHHHHHHHHHT---TCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE T ss_pred CCHHHHHHHHHHHHHHC---CCCEEEEECCCCCEEECCHHHHHHHHHHCCCCEEEC T ss_conf 51578899999999984---995999906999646577899999999869968957 No 20 >>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* (A:1-133) Probab=61.73 E-value=8.2 Score=19.08 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=27.3 Q ss_pred CCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEE Q ss_conf 87389980772000035-17899998689879997 Q gi|254780202|r 84 EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE 117 (211) Q Consensus 84 ~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IE 117 (211) +...+.++.|.|+++.- ..|++.++++|+.+.+- T Consensus 96 G~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~ii 130 (133) T 2e0n_A 96 GRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT 130 (133) T ss_dssp TCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE T ss_pred CCCEEEECCCCCCCCCCHHEECCCCCCCCEEEEEC T ss_conf 97147863544321142101101123442026976 No 21 >>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrinogen-III methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} (A:1-130) Probab=61.55 E-value=12 Score=18.00 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=35.4 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 078999999999875216678738998077200003-51789999868987999 Q gi|254780202|r 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ....++..+.+.+.... +.+.+.++.|.|+++. -..++++++++|+.+.+ T Consensus 75 ~~~~~~~~~~i~~~~~~---g~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~i 125 (130) T 1s4d_A 75 SPKQRDISLRLVELARA---GNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRI 125 (130) T ss_dssp CCCHHHHHHHHHHHHHT---TCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEE T ss_pred CCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 20256788999999977---9918999478984046689999999852786587 No 22 >>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} (A:1-130) Probab=60.78 E-value=12 Score=17.91 Aligned_cols=49 Identities=10% Similarity=0.258 Sum_probs=35.0 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 78999999999875216678738998077200003-51789999868987999 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ...++..+.+.+... ...+.++++-|.|+++. ...|+..+++.|+.+.+ T Consensus 77 ~~~~~~~~~i~~~~~---~g~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~v 126 (130) T 1cbf_A 77 MHLEEMVGTMLDRMR---EGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEI 126 (130) T ss_dssp CCHHHHHHHHHHHHT---TTCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEE T ss_pred CCHHHHHHHHHHHHH---CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 657888999999998---09846763588642226067789999732664487 No 23 >>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus HB8} (A:1-120) Probab=60.69 E-value=12 Score=17.90 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=28.0 Q ss_pred CCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEEC Q ss_conf 87389980772000035-178999986898799972 Q gi|254780202|r 84 EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118 (211) Q Consensus 84 ~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IET 118 (211) ..+.++++-|.|+++.. ..|++.+.+.|+++.+-- T Consensus 75 g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiP 110 (120) T 1va0_A 75 HPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVP 110 (120) T ss_dssp SSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEEC T ss_pred CCEEEEECCCCCCEECHHHHHHHHHHHCCCCCCCCC T ss_conf 430233026754110278899998751234201475 No 24 >>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:46-136,A:384-458) Probab=58.61 E-value=13 Score=17.67 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=39.9 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-CC-CHHHHHHHHCCCEEEEECCCC Q ss_conf 07899999999987521667873899807720000-35-178999986898799972788 Q gi|254780202|r 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VD-VPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-~l-~~L~~~l~~~g~~v~IETnGt 121 (211) ..+..++.+.+.+ ...++.+.+.+.|+.|+.+ +. ..+.+.|.+..|-|.++.-=| T Consensus 96 ~~~~~~~~~~~~~---~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~kld~vV~~d~~~t 152 (166) T 2e7z_A 96 MANPTALFTAMAT---EKPYPVKAFFALASNALMGYANQQNALKGLMNQDLVVCYDQFMT 152 (166) T ss_dssp CCCHHHHHHHHHH---CCSSCCCEEEEESCCGGGSSSCHHHHHHHHHTCSEEEEEESSCC T ss_pred CCCCHHHHHHHHH---CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCC T ss_conf 3463167777650---37775289999378610118750455666531451687314577 No 25 >>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... (A:1-122) Probab=57.93 E-value=14 Score=17.59 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=28.8 Q ss_pred CCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEEC Q ss_conf 787389980772000035-178999986898799972 Q gi|254780202|r 83 KEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118 (211) Q Consensus 83 ~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IET 118 (211) ...+.+.+..|.|+++.- ..|++.+.+.|+.+.+-- T Consensus 76 ~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~v~viP 112 (122) T 2z6r_A 76 KENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIH 112 (122) T ss_dssp TTSCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEEC T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEECC T ss_conf 6998899967865544469999999986588159837 No 26 >>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:1-115) Probab=57.91 E-value=14 Score=17.59 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=35.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEE Q ss_conf 0789999999998752166787389980772000035-1789999868987999 Q gi|254780202|r 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAV 116 (211) Q Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~I 116 (211) ..+.++..+.+.+.... ....++++.|-|+++.- ..|+..+++.|+.+.+ T Consensus 61 ~~~~~~~~~~i~~~~~~---g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~vei 111 (115) T 1ve2_A 61 KTPQEAITARLIALARE---GRVVARLKGGDPMVFGRGGEEALALRRAGIPFEV 111 (115) T ss_dssp CCCHHHHHHHHHHHHHT---TCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEE T ss_pred CCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE T ss_conf 13399999999999977---9867674154331224288999997406787599 No 27 >>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:213-330) Probab=55.84 E-value=7.2 Score=19.45 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=26.9 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 8738998077200003-51789999868987999 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ..+.++++.|-|+++. -..|++.++++|+.+.+ T Consensus 81 g~~v~~l~~GDP~~~~~~~~l~~~~~~~~~~v~v 114 (118) T 1pjq_A 81 GKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSV 114 (118) T ss_dssp TCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEE T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 9859997688732106799999985048737994 No 28 >>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} (A:1-132) Probab=53.63 E-value=14 Score=17.51 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=27.5 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEE Q ss_conf 8738998077200003-517899998689879997 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE 117 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IE 117 (211) ....+.++-|.|+++. ...|++.++++|+.+.+- T Consensus 87 g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~vi 121 (132) T 1vhv_A 87 SKSVVLLVPGDPXVATTHSAIKLEAERKGVKTRII 121 (132) T ss_dssp TSEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEE T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 79689997688666650688999999749864997 No 29 >>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis} (A:1-81) Probab=53.53 E-value=7.5 Score=19.33 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=31.1 Q ss_pred CCEEEEECCCCCCCC-----C--CHHHHHHHHCCC-------EEEEECCCCCCCCC Q ss_conf 738998077200003-----5--178999986898-------79997278886678 Q gi|254780202|r 85 GRYCVLTGGEPLLQV-----D--VPLIQALNKRGF-------EIAVETNGTIEPPQ 126 (211) Q Consensus 85 ~~~VviTGGEPllq~-----l--~~L~~~l~~~g~-------~v~IETnGt~~~~~ 126 (211) .+.++|-.|+-+... + ..|...|+.+|+ ...+||||.+.+.. T Consensus 15 ~p~~li~~G~~~~~~l~~~~it~~dl~~~lR~~gi~~l~~V~~aiLE~~G~iSVi~ 70 (81) T 3c6f_A 15 EPNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLP 70 (81) T ss_dssp -CEEEEETTEECHHHHHHTTCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCEEEEE T ss_pred CCEEEEECCEECHHHHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEEECCCCEEEEE T ss_conf 96899999999799997849999999999997499998880088992799889998 No 30 >>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, structural genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae} (A:1-142) Probab=53.50 E-value=16 Score=17.12 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC----CCHHHHHHHHCCCEEEE Q ss_conf 99999999875216678738998077200003----51789999868987999 Q gi|254780202|r 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV----DVPLIQALNKRGFEIAV 116 (211) Q Consensus 68 ~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~----l~~L~~~l~~~g~~v~I 116 (211) +++.+.+.+. ...+...+.++.|.|+++. +.+.+..+++.|+.+.+ T Consensus 89 ~~~~~~i~~~---~~~G~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~gi~~ev 138 (142) T 2npn_A 89 HLLASTIRER---TPDDGAVAFLVWGDPSLYDSTLRIIEHXRNLEDLHADVKV 138 (142) T ss_dssp HHHHHHHHHH---SCTTCEEEEEESBCTTSSCCHHHHHHHHHHHHTCCEEEEE T ss_pred HHHHHHHHHH---HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 9999999999---9779929999689984357489999998876617997899 No 31 >>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} (A:1-88,A:257-401) Probab=51.76 E-value=15 Score=17.24 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=28.3 Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-------------------CCCEEEEECCCCCCCCCCHHHHHHHHC-CCEE Q ss_conf 6607899999999987521667-------------------873899807720000351789999868-9879 Q gi|254780202|r 62 GGRYNVDQLADLIEEQWITGEK-------------------EGRYCVLTGGEPLLQVDVPLIQALNKR-GFEI 114 (211) Q Consensus 62 ~~~~~~~~i~~~i~~~~~~~~~-------------------~~~~VviTGGEPllq~l~~L~~~l~~~-g~~v 114 (211) ..+++++++.+.+++....... ++-..+++|||||-. ++.+.+++. |.++ T Consensus 132 ~~kFdp~~~l~~I~~~kVT~~~~~PTi~r~L~~~~l~~~dlssLR~i~~gGepL~p---ev~~~~~e~~G~~I 201 (233) T 3etc_A 132 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNP---EVFNRFLEFTGIKL 201 (233) T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCH---HHHHHHHHHHSCCC T ss_pred CCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH---HHHHHHHHHCCCCC T ss_conf 54322899999876137246247899999999741100012342441036688738---88899876312200 No 32 >>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase SCO1869, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} (A:1-48,A:164-221) Probab=50.93 E-value=17 Score=16.85 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=30.7 Q ss_pred CCCCCCCCCCCCC------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC--CC Q ss_conf 3332368888775------------------752325888660789999999998752166787389980772000--03 Q gi|254780202|r 40 QDRLSAQCRFCDT------------------DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QV 99 (211) Q Consensus 40 ~~~~~~~C~~CDT------------------~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPll--q~ 99 (211) +-+++.-|+||=- ...|..-.....-..+++.+........+-.+.+..+|-|.-.+. |+ T Consensus 6 ~i~sD~~CPwCyig~~~l~~ai~~~~~~~~v~i~~~pf~l~P~~~~~~V~~~~~~a~~~GI~gVP~fiingk~~i~GAqp 85 (106) T 3gl5_A 6 EIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQP 85 (106) T ss_dssp EEEECSSCHHHHHHHHHHHHHHHTCTTGGGEEEEEEECCSCTTTTHHHHHHHHHHHHHTTCCSSSEEEETTTEEEESSCC T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCC T ss_conf 99981978729976999999999668768759999866646888999999999999986995057699999788868999 Q ss_pred CCHHHHHH Q ss_conf 51789999 Q gi|254780202|r 100 DVPLIQAL 107 (211) Q Consensus 100 l~~L~~~l 107 (211) ...+.+.| T Consensus 86 ~e~f~~~i 93 (106) T 3gl5_A 86 AEVFTQAL 93 (106) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 33 >>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis} (A:82-153) Probab=49.50 E-value=18 Score=16.76 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=31.3 Q ss_pred CCCEEEEECCCCCCCC-----C--CHHHHHHHHCCCE-------EEEECCCCCCCC Q ss_conf 8738998077200003-----5--1789999868987-------999727888667 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-----D--VPLIQALNKRGFE-------IAVETNGTIEPP 125 (211) Q Consensus 84 ~~~~VviTGGEPllq~-----l--~~L~~~l~~~g~~-------v~IETnGt~~~~ 125 (211) +.+.++|..|+-+..+ + ..|...|+.+|+. ..+||||++.+. T Consensus 9 g~p~~Li~dG~i~~~nL~~~~i~~~~l~~~LR~~gi~~~~~V~~a~lE~~G~lsv~ 64 (72) T 3c6f_A 9 SLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAEWHKNKPLYTV 64 (72) T ss_dssp CCCEEEEETTEECHHHHHHHSCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCCEEE T ss_pred CCCCEEEECCEECHHHHHHHCCCHHHHHHHHHHCCCCCHHHEEEEEEECCCCEEEE T ss_conf 87756998999969999770999999999999829999889789999779979999 No 34 >>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} (A:) Probab=49.50 E-value=5.5 Score=20.24 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=26.8 Q ss_pred CCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 105584013731599976898-8875553333236888877575232 Q gi|254780202|r 12 TLQGEGGHAGRVAVFCRFSGC-NLWSGREQDRLSAQCRFCDTDFVGI 57 (211) Q Consensus 12 SiQGEG~~~G~p~vFiRl~GC-nL~c~~~~~~~~~~C~~CDT~y~~~ 57 (211) +=.|.|.-.|-|-|||.+..= +- .-|.|||-.|.-. T Consensus 17 aCDGG~gaLGHPrVyi~ld~~~~~----------v~C~YCg~rfv~~ 53 (67) T 2jrr_A 17 ACDGGEGALGHPRVWLQIPEDTGW----------VECPYCDCKYVLK 53 (67) T ss_dssp EEEESSTTSEEEEEEEECCTTTSE----------EEETTTTEEEEET T ss_pred EECCCCCCCCCCEEEEECCCCCCE----------EECCCCCCEEEEC T ss_conf 957999989999899984699997----------9888888898977 No 35 >>2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca component; PTS system, fructose specific IIB subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} (A:) Probab=42.99 E-value=14 Score=17.56 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=19.1 Q ss_pred HHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 789999868987999727888667 Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGTIEPP 125 (211) Q Consensus 102 ~L~~~l~~~g~~v~IETnGt~~~~ 125 (211) .|-+.-+++|+.+.+||+|+.-+. T Consensus 24 aLe~aa~~~G~~ikVEtqG~~G~e 47 (106) T 2r48_A 24 NLQKAADRLGVSIKVETQGGIGVE 47 (106) T ss_dssp HHHHHHHHHTCEEEEEEEETTEEE T ss_pred HHHHHHHHCCCEEEEEECCCCCCC T ss_conf 999999986996999965887877 No 36 >>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} (A:121-221) Probab=42.58 E-value=14 Score=17.51 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=26.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEE Q ss_conf 6888877575232588866078999999999875216678738998077200003517899998689879 Q gi|254780202|r 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 (211) Q Consensus 45 ~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v 114 (211) +.|+|||- |......-.---.-+...+....+. .......+++.|.++.- ..-+.|++.|+++ T Consensus 9 ~~c~~cdg-~~~~gk~v~ViG~g~~a~~~A~~l~---~~~~~Vti~~~~~~~~~---~~~~~l~~~~i~i 71 (101) T 3fbs_A 9 FHCPYCHG-YELDQGKIGVIAASPMAIHHALMLP---DWGETTFFTNGIVEPDA---DQHALLAARGVRV 71 (101) T ss_dssp ESCHHHHT-GGGTTCEEEEECCSTTHHHHHHHGG---GTSEEEEECTTTCCCCH---HHHHHHHHTTCEE T ss_pred EEECCCCH-HHHCCCEEEEECCCHHHHHHHHHHH---CCCCEEEEECCCHHHCH---HHHHHHHHCHHHE T ss_conf 75013442-6637987999658746999999997---38988999827611075---7899874220000 No 37 >>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} (A:165-339) Probab=41.86 E-value=24 Score=15.93 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=37.4 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECC-----------CCCCC--CCCHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 78999999999875216678738998077-----------20000--35178999986898799972788866 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGG-----------EPLLQ--VDVPLIQALNKRGFEIAVETNGTIEP 124 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG-----------EPllq--~l~~L~~~l~~~g~~v~IETnGt~~~ 124 (211) -+.+++...+.+....+.-..| |..+|+ +|.+- .+..+++..++.|++|...++|...+ T Consensus 18 ~~~~e~~~~v~~~~~~g~d~IK-i~~dG~~~~~~~~~~~g~~~~s~e~l~~~v~~A~~~G~~v~~Ha~g~~a~ 89 (175) T 2p9b_A 18 GTPEEARTAVAQNLKAGVNAIK-IAATGGVTDAQEIGEAGSPQXSVEQXRAICDEAHQYGVIVGAHAQSPEGV 89 (175) T ss_dssp CCHHHHHHHHHHHHHTTCSCEE-EECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEECSHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHH T ss_conf 2125666666666543221100-10135543222333321111118999988876541243022102441556 No 38 >>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} (A:) Probab=41.67 E-value=14 Score=17.48 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=20.1 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 73159997689888755533332368888775752325 Q gi|254780202|r 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 (211) Q Consensus 21 G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~ 58 (211) --|-|||-++.=|= .-|+||.|-|-+.. T Consensus 35 DHPHvFlDMG~d~E----------~iCpYCSTLYry~~ 62 (87) T 2jz8_A 35 DHPHIFIDMGSTDE----------KICPYCSTLYRYDP 62 (87) T ss_dssp SSSSCEEECTTCCE----------ECCTTTCCEEECCT T ss_pred CCCEEEEECCCCCE----------EECCCCCCEEEECC T ss_conf 99889897599997----------98889998878477 No 39 >>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} (B:107-168) Probab=39.67 E-value=18 Score=16.79 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=8.8 Q ss_pred CCCCCCCCCCC Q ss_conf 36888877575 Q gi|254780202|r 44 SAQCRFCDTDF 54 (211) Q Consensus 44 ~~~C~~CDT~y 54 (211) .++|.|||+.+ T Consensus 37 ~lrC~YCe~~~ 47 (62) T 1pg5_B 37 KMRCEYCETII 47 (62) T ss_dssp EEEETTTCCEE T ss_pred EEEEECCCCEE T ss_conf 89815799892 No 40 >>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* (A:1-131) Probab=39.60 E-value=26 Score=15.70 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=31.0 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEE Q ss_conf 89999999998752166787389980772000035-178999986898799 Q gi|254780202|r 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 (211) Q Consensus 66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~ 115 (211) ..++..+.+..... .....++++.|.|+++.- ..|++.+++.|+... T Consensus 59 ~~~~~~~~~~~~~~---~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~~~ 106 (131) T 2zvb_A 59 EELDRAEEALERAL---SGQRVALVSGGDPGIYGMAAPVLELMEERGLKRV 106 (131) T ss_dssp SHHHHHHHHHHHHH---TTCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEC T ss_pred HHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 58999999999997---1991899835766544405899999998399743 No 41 >>2w19_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AROG; transferase isomerase complex, aromatic amino acid biosynthesis, multi-enzyme complex; 2.15A {Mycobacterium tuberculosis} PDB: 2w1a_A* 2b7o_A* (A:) Probab=38.89 E-value=26 Score=15.62 Aligned_cols=54 Identities=13% Similarity=0.311 Sum_probs=38.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCEE Q ss_conf 88660789999999998752166787389980--77200003517899998689879 Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFEI 114 (211) Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~v 114 (211) +-|..++.+++++.++.+.+... +.+...|| |..=....+-+|+++.++.|..| T Consensus 316 KvGP~~~p~el~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~li~aV~~~G~~V 371 (472) T 2w19_A 316 KLGPNMTPELAVEYVERLDPHNK-PGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQV 371 (472) T ss_dssp EECTTCCHHHHHHHHHHHCTTCC-TTSEEEEECCCTTTHHHHHHHHHHHHHHTTCCC T ss_pred EECCCCCHHHHHHHHHHHCCCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCE T ss_conf 35899999999999998497887-862899960383789988899999998779964 No 42 >>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} (A:) Probab=38.84 E-value=12 Score=18.06 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=20.2 Q ss_pred CCHHHHHHHHCCCEEEEE-CCCCCCCC Q ss_conf 517899998689879997-27888667 Q gi|254780202|r 100 DVPLIQALNKRGFEIAVE-TNGTIEPP 125 (211) Q Consensus 100 l~~L~~~l~~~g~~v~IE-TnGt~~~~ 125 (211) ...+++.+......+|+| |||++.-. T Consensus 12 Vq~~L~~f~~~~VYiHlETTnGAYAsH 38 (119) T 1njh_A 12 VQASLERYADRPVYIHLETTTGSYSAH 38 (119) T ss_dssp HHHHHHHTTTSCEEEEEEEEECC---- T ss_pred HHHHHHHHCCCCEEEEEEECCHHHHHH T ss_conf 999999846995499997336266652 No 43 >>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263) Probab=37.08 E-value=21 Score=16.35 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=20.8 Q ss_pred EECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 807720000351789999868987999727888 Q gi|254780202|r 90 LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 90 iTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) +.|.+|.-. ..+.++.|++.|+++.|=||++- T Consensus 13 ~~~~~~~~~-a~e~l~~L~~~G~~~~ivTN~~~ 44 (131) T 1zjj_A 13 YRGNRAIPG-VRELIEFLKERGIPFAFLTNNST 44 (131) T ss_dssp EETTEECTT-HHHHHHHHHHHTCCEEEEESCCS T ss_pred EECCCCCCC-HHHHHHHHHHCCCCEEEEECCCC T ss_conf 889995844-99999999977996899948999 No 44 >>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284) Probab=36.70 E-value=19 Score=16.63 Aligned_cols=31 Identities=19% Similarity=0.025 Sum_probs=23.2 Q ss_pred ECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 07720000351789999868987999727888 Q gi|254780202|r 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 91 TGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) .|++|.= ...++++.|++.|+++.+=||++. T Consensus 27 ~~~~~~p-g~~~~L~~L~~~g~~~~i~Tn~~~ 57 (162) T 2hx1_A 27 TYNGLLP-GIENTFDYLKAQGQDYYIVTNDAS 57 (162) T ss_dssp ETTEECT-THHHHHHHHHHTTCEEEEEECCCS T ss_pred ECCCCCH-HHHHHHHHHHHCCCCEEEEECCCC T ss_conf 3998483-199999999986995899968999 No 45 >>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} (A:30-237) Probab=36.19 E-value=29 Score=15.35 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=29.7 Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCC Q ss_conf 3899807720000-35178999986898799972788 Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt 121 (211) ..++++|+..+.. ++..+++.|++.|.++..+.++. T Consensus 87 ~~~~~~g~~~l~~r~~~~~~~~L~~mG~~i~~~~~~~ 123 (208) T 2yvw_A 87 AVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGYV 123 (208) T ss_dssp EEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEETTEE T ss_pred CCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC T ss_conf 1001013223465542036763000343222223221 No 46 >>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} (A:159-277) Probab=34.14 E-value=31 Score=15.13 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=37.2 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECC---------CCCCCC--CCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 78999999999875216678738998077---------200003--517899998689879997278886 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGG---------EPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG---------EPllq~--l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) -+.+++...+.+....+.-..| +..+|| +|.+-+ +..++++.++.|++|...++|... T Consensus 15 ~~~~e~~~~v~~~~~~g~d~IK-i~~~g~~~~~~~~~~~~~~~~e~l~a~v~~Ah~~G~~v~~Ha~~~~~ 83 (119) T 2qs8_A 15 NGPYEVYAAVRQRYKDGADGIK-ITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGXWVAVHAHGAEG 83 (119) T ss_dssp CSHHHHHHHHHHHHHHTCSEEE-EECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHH T ss_pred CCHHHHHHHHHHHHHCCCCCHH-HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 6789999888876531432000-00023222233344430101567799999999839962112466066 No 47 >>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271) Probab=33.27 E-value=32 Score=15.04 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=25.7 Q ss_pred EEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 99807720000351789999868987999727888 Q gi|254780202|r 88 CVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 88 VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) |..-|++|+-. ..++++.|+++|+++.|=|||+. T Consensus 27 vl~~~~~~~pg-a~e~l~~L~~~G~~~~~vTN~~~ 60 (145) T 1vjr_A 27 TFYLDDSLLPG-SLEFLETLKEKNKRFVFFTNNSS 60 (145) T ss_dssp TTEETTEECTT-HHHHHHHHHHTTCEEEEEESCTT T ss_pred EEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCC T ss_conf 46879935820-99999999976997899458998 No 48 >>2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc component; fructose specific IIB subunit, PFAM02379, structural genomics; HET: MSE; 1.60A {Bacillus subtilis subsp} (A:) Probab=33.18 E-value=20 Score=16.39 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=19.3 Q ss_pred CHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 178999986898799972788866 Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIEP 124 (211) Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~~ 124 (211) ..|-+.-+++|+.+.+||.|+.-+ T Consensus 23 eaLe~aa~~~G~~ikVEtqG~~G~ 46 (106) T 2r4q_A 23 DALKEKAKELGVEIKVETNGSSGI 46 (106) T ss_dssp HHHHHHHHHHTCCEEEEEEETTEE T ss_pred HHHHHHHHHCCCEEEEEECCCCCC T ss_conf 999999998799599995588787 No 49 >>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B* (B:70-305) Probab=33.00 E-value=15 Score=17.21 Aligned_cols=10 Identities=10% Similarity=-0.041 Sum_probs=5.1 Q ss_pred CEEEEECCCC Q ss_conf 5079841677 Q gi|254780202|r 128 IDWICVSPKA 137 (211) Q Consensus 128 ~d~it~SPK~ 137 (211) +-||+.+.|. T Consensus 141 ~i~v~C~~~~ 150 (236) T 2zxe_B 141 VLPLRCAAKR 150 (236) T ss_dssp EEEEEEEC-- T ss_pred EEEEEEEECC T ss_conf 3778988567 No 50 >>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190) Probab=32.71 E-value=33 Score=14.98 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=26.3 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 8998077200003517899998689879997278886 Q gi|254780202|r 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) +|-=-||-|. -...++++.|+++|+++.+=||++.. T Consensus 9 ~~~~~~~~l~-pgv~e~L~~Lk~~g~~~~i~Sn~~~~ 44 (124) T 2fi1_A 9 YIWDLGGTLF-EGVSDLLEDISNQGGRHFLVSHRNDQ 44 (124) T ss_dssp EEECTBTTBC-TTHHHHHHHHHHTTCEEEEECSSCTH T ss_pred EEEECCCCCC-CHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 9995899756-20699986400120121202322222 No 51 >>1g6s_A EPSP synthase; two-domain structure, inside-OUT alpha-beta barrel, transferase; HET: S3P GPJ; 1.50A {Escherichia coli} (A:21-243) Probab=32.64 E-value=33 Score=14.97 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=32.5 Q ss_pred CCCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 7873899807720000-351789999868987999727888 Q gi|254780202|r 83 KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 83 ~~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) .....++++|++.+.+ ++.++++.|++.|-++..+.++.. T Consensus 88 ~~~~~~~~~g~~~l~~rp~~~l~~~L~~~Ga~i~~~~~~~~ 128 (223) T 1g6s_A 88 LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENY 128 (223) T ss_dssp SSEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTS T ss_pred CCCEEEEEECCHHHCCCCCEEEHHHHHHCCCEEEEECCCCE T ss_conf 47349998467421579640005568866977997226741 No 52 >>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} (A:69-148,A:245-289) Probab=32.56 E-value=33 Score=14.96 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.5 Q ss_pred CCCEEEEECCCCCCC--CCCHHHHHHHHCCCE Q ss_conf 873899807720000--351789999868987 Q gi|254780202|r 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113 (211) Q Consensus 84 ~~~~VviTGGEPllq--~l~~L~~~l~~~g~~ 113 (211) ....++.-+|.|.+- ++..|+..|++.|++ T Consensus 20 ~GdL~i~G~GDPtL~~~~L~~la~~Lk~~GI~ 51 (125) T 1w5d_A 20 NGNLYLKGKGDPTLLPSDFDKMAEILKHSGVK 51 (125) T ss_dssp CSCEEEEECSCTTCCHHHHHHHHHHHHHTTCC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 75399994669988755699999999970875 No 53 >>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* (A:60-136,A:229-272) Probab=32.07 E-value=34 Score=14.91 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=23.2 Q ss_pred CCCEEEEECCCCCCC--CCCHHHHHHHHCCCE Q ss_conf 873899807720000--351789999868987 Q gi|254780202|r 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113 (211) Q Consensus 84 ~~~~VviTGGEPllq--~l~~L~~~l~~~g~~ 113 (211) ....++.-||.|.+- ++..|++.|++.|++ T Consensus 20 ~GdL~i~G~GDPtLt~~~L~~la~~Lk~~GI~ 51 (121) T 3a3d_A 20 DGNLIVSFTGDPDLTRGQLYSLLAELKKQGIK 51 (121) T ss_dssp CSCEEEECCCCTTCCHHHHHHHHHHHHHTTCC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 33399983479988989999999999961875 No 54 >>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} (A:19-29,A:238-294) Probab=31.90 E-value=20 Score=16.38 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=21.5 Q ss_pred EECCCCCCC-----CCCHHHHHHHHCCCEEEEECCC Q ss_conf 807720000-----3517899998689879997278 Q gi|254780202|r 90 LTGGEPLLQ-----VDVPLIQALNKRGFEIAVETNG 120 (211) Q Consensus 90 iTGGEPllq-----~l~~L~~~l~~~g~~v~IETnG 120 (211) +||||=.+. .+..++..|++.|.++..+.|+ T Consensus 25 iTgG~V~i~~~~~~hl~~il~kL~~~G~~v~~~~~~ 60 (68) T 2yvw_A 25 LTDGEILLENARINHLRAVVEKLKLIGGEVVEENGN 60 (68) T ss_dssp HTTCEEEEESCCGGGCHHHHHHHHHHTEEEEEETTE T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCEECCCC T ss_conf 233310320212355201223445430231001220 No 55 >>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} (A:) Probab=31.59 E-value=34 Score=14.86 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=24.7 Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEE-ECC Q ss_conf 873899807720000351789999868987999-727 Q gi|254780202|r 84 EGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV-ETN 119 (211) Q Consensus 84 ~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~I-ETn 119 (211) ..++|+|+|+-+.-+ .+.+.|.+.|+.|.+ +.| T Consensus 5 ~~~~v~IiG~G~iG~---~ia~~L~~~G~~V~vid~~ 38 (141) T 3llv_A 5 GRYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDKS 38 (141) T ss_dssp -CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEESC T ss_pred CCCCEEEECCCHHHH---HHHHHHHHCCCCEEEEECH T ss_conf 879699989988999---9999999879938997433 No 56 >>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} (A:134-273) Probab=31.37 E-value=35 Score=14.83 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=37.2 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECC---------CCCCC--CCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 78999999999875216678738998077---------20000--3517899998689879997278886 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGG---------EPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG---------EPllq--~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) -+.++....+.+......-.. -+..+|+ +|.+= .+..+++..++.|++|.+.++|-.. T Consensus 36 ~~~~e~~~~~~~~~~~~~d~i-Ki~~dg~~~~~~~~~~~~~~~~e~l~~~v~~a~~~G~~v~~Ha~gd~a 104 (140) T 3feq_A 36 DGVEGVRLAVREEIQKGATQI-KIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRA 104 (140) T ss_dssp CSHHHHHHHHHHHHHTTCSSE-EEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHH T ss_pred CCHHHHHHHHHHHHHHCCHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH T ss_conf 789999999999765022022-211145533234553210001566666677776420012221100035 No 57 >>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} (A:66-145,A:240-288) Probab=30.70 E-value=35 Score=14.76 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.7 Q ss_pred CCEEEEECCCCCCC--CCCHHHHHHHHCCCE Q ss_conf 73899807720000--351789999868987 Q gi|254780202|r 85 GRYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113 (211) Q Consensus 85 ~~~VviTGGEPllq--~l~~L~~~l~~~g~~ 113 (211) ...++.-+|.|.+- ++..|++.|++.|++ T Consensus 21 GdL~IkGsGDPtLtse~L~~La~~Lk~~GIr 51 (129) T 1w79_A 21 QDLYLVGRGDPTLSAEDLDAMAAEVAASGVR 51 (129) T ss_dssp SCEEEEECSCTTCCHHHHHHHHHHHHHTTCC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 3099995589987888999999999972875 No 58 >>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} (A:1-20,A:86-225) Probab=30.60 E-value=36 Score=14.75 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=20.5 Q ss_pred CCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 3517899998689879997278886 Q gi|254780202|r 99 VDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 99 ~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ...++++.|+++|+++.|=||++.. T Consensus 28 g~~~~L~~Lk~~giki~ivSn~~~~ 52 (160) T 3d6j_A 28 DTLPTLTHLKKQGIRIGIISTKYRF 52 (160) T ss_dssp THHHHHHHHHHHTCEEEEECSSCHH T ss_pred CHHHHHHHHHHCCCEEEEEECCCHH T ss_conf 5999999999889959997168267 No 59 >>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259) Probab=30.41 E-value=36 Score=14.73 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=16.2 Q ss_pred CHHHHHHHHCCCEEEEECCCCC Q ss_conf 1789999868987999727888 Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~ 122 (211) .++++.|++.|+++.|=||++- T Consensus 29 ~e~L~~L~~~G~~~~iiTN~~~ 50 (140) T 2ho4_A 29 QEALKRLRATSVXVRFVTNTTK 50 (140) T ss_dssp HHHHHHHHTSSCEEEEEECCSS T ss_pred HHHHHHHHHCCCCEEEEECCCC T ss_conf 9999999986998899948998 No 60 >>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} (A:1-140) Probab=29.41 E-value=37 Score=14.61 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=25.9 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 8738998077200003-51789999868987999 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ..+.+.+.-|.|+++. -..|++.+++.|+++.+ T Consensus 95 ~~~v~~l~~GDP~~~~~~~~l~~~~~~~~i~v~v 128 (140) T 3i4t_A 95 TKNVALLVVGDVYGATTHSDIFVRCQKMGIEVKV 128 (140) T ss_dssp TSEEEEEESBCHHHHCTTHHHHHHHHHHTCCEEE T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE T ss_conf 9988999768888887199999999976992797 No 61 >>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:1-22,A:267-440) Probab=29.34 E-value=37 Score=14.61 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=22.9 Q ss_pred CCCCEEEEECCCCCCC---C------CCHHHHHH-H-HCCCEE---EEECCCCCC Q ss_conf 7873899807720000---3------51789999-8-689879---997278886 Q gi|254780202|r 83 KEGRYCVLTGGEPLLQ---V------DVPLIQAL-N-KRGFEI---AVETNGTIE 123 (211) Q Consensus 83 ~~~~~VviTGGEPllq---~------l~~L~~~l-~-~~g~~v---~IETnGt~~ 123 (211) ...+.+.|.||||... + .-+|.=.+ . -.+..+ ..-|-|.-= T Consensus 74 ~~~P~~li~GGEtTVtv~G~~G~GGRNQElaL~~a~~l~~~~~~~LsagTDG~DG 128 (196) T 1x3l_A 74 FEPPVVLVFGGETTVTIEGKGGKGGPNQEIALSATRKISDLEALIVAFDTDGTDG 128 (196) T ss_dssp SCSSEEEEEEECCBCCCSSSCCSCCHHHHHHHHHTTTTTTSEEEEEEEETTSCCS T ss_pred CCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC T ss_conf 8998599987843799689899885269999999985669987999978578888 No 62 >>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} (A:1-50,A:206-359,A:513-529) Probab=29.26 E-value=37 Score=14.60 Aligned_cols=50 Identities=20% Similarity=0.136 Sum_probs=27.4 Q ss_pred CCCCHHHHHHHHHHHHHCCCC--------------------CCCEEEEECCCCCCCCCCHHHHHHHHC-CCEEE Q ss_conf 607899999999987521667--------------------873899807720000351789999868-98799 Q gi|254780202|r 63 GRYNVDQLADLIEEQWITGEK--------------------EGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIA 115 (211) Q Consensus 63 ~~~~~~~i~~~i~~~~~~~~~--------------------~~~~VviTGGEPllq~l~~L~~~l~~~-g~~v~ 115 (211) +.++.+++.+.+++......+ ++=.++++||||+-- .+.+.+++. |.++. T Consensus 104 ~~~~p~~~l~~i~~~kvT~~~~~Pt~~~~Ll~~~~~~~~~l~sLR~~~sgGe~lp~---~l~~~~~~~fg~~i~ 174 (221) T 2v7b_A 104 ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPR---EIGERFTAHFGCEIL 174 (221) T ss_dssp SCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCH---HHHHHHHHHHSCCEE T ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCH---HHHHHHHHHCCCEEE T ss_conf 22232100121012122011022211122222222222343000001346677839---999999975496351 No 63 >>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} (A:60-137,A:231-275) Probab=28.60 E-value=38 Score=14.58 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.9 Q ss_pred CEEEEECCCCCCC--CCCHHHHHHHHCCCE Q ss_conf 3899807720000--351789999868987 Q gi|254780202|r 86 RYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113 (211) Q Consensus 86 ~~VviTGGEPllq--~l~~L~~~l~~~g~~ 113 (211) ..++.-||.|.+- ++..|++.|++.|++ T Consensus 22 dLyIkGsGDPtLtse~L~~La~~Lk~~GIr 51 (123) T 2ex2_A 22 DLVARFGADPTLKRQDIRNMVATLKKSGVN 51 (123) T ss_dssp EEEEECCCCTTCCHHHHHHHHHHHHHTTCC T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 189982689984666899999999971885 No 64 >>1ad3_A ALDH, aldehyde dehydrogenase (class 3); NADP, oxidoreductase, aromatic aldehyde; HET: NAD; 2.60A {Rattus norvegicus} (A:1-212,A:395-452) Probab=28.27 E-value=39 Score=14.48 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=21.7 Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 38998077200003517899998689879997278886 Q gi|254780202|r 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 86 ~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) .+|.+||+...-. .+++...++.-++.+|..|+.+ T Consensus 181 d~I~fTGS~~vG~---~V~~aAA~~l~pv~LELGG~~~ 215 (270) T 1ad3_A 181 DHIMYTGSTAVGK---IVMAAAAKHLTPVTLELGGTVP 215 (270) T ss_dssp SEEEEESCHHHHH---HHHHHHHTTTCCEEEECCCGCT T ss_pred CEEEEECCHHHHH---HHHHHHHHCCCCEEEECCCCCC T ss_conf 5589978479999---9999988328968998688768 No 65 >>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A (A:27-187) Probab=27.48 E-value=39 Score=14.47 Aligned_cols=45 Identities=9% Similarity=-0.102 Sum_probs=28.8 Q ss_pred CCCHHHHHHHHCCCEEEEECCCCCCC-----------CCCCEEEEECCCCCCCCCC Q ss_conf 35178999986898799972788866-----------7885079841677741001 Q gi|254780202|r 99 VDVPLIQALNKRGFEIAVETNGTIEP-----------PQGIDWICVSPKAGCDLKI 143 (211) Q Consensus 99 ~l~~L~~~l~~~g~~v~IETnGt~~~-----------~~~~d~it~SPK~~~~~~~ 143 (211) ...++++.|+++|+++.+=|||...- ...++.+....|....... T Consensus 46 g~~e~l~~L~~~g~~i~i~T~~~~~~~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~ 101 (161) T 2wm8_A 46 EVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFE 101 (161) T ss_dssp THHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHH T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH T ss_conf 59999999998897799506785489999999735764267777516765648999 No 66 >>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=26.85 E-value=30 Score=15.25 Aligned_cols=13 Identities=15% Similarity=0.759 Sum_probs=10.7 Q ss_pred CCCCCCCCCCCCC Q ss_conf 6888877575232 Q gi|254780202|r 45 AQCRFCDTDFVGI 57 (211) Q Consensus 45 ~~C~~CDT~y~~~ 57 (211) ..|.+|+.+|+.. T Consensus 14 ~eC~lC~vKYs~r 26 (55) T 2yrk_A 14 PECTLCGVKYSAR 26 (55) T ss_dssp SCCTTTTCCCCSS T ss_pred CCCCCCCEEEEEE T ss_conf 5376325142102 No 67 >>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} (A:1-12,A:207-384) Probab=26.73 E-value=41 Score=14.30 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=18.9 Q ss_pred CCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 517899998689879997278886 Q gi|254780202|r 100 DVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 100 l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ..++++.|+++|+++.|-||+... T Consensus 26 ~~e~L~~Lk~~G~~l~ivTn~~~~ 49 (190) T 1qyi_A 26 VKVLLNDLKGAGFELGIATGRPYT 49 (190) T ss_dssp HHHHHHHHHHTTCEEEEECSSCHH T ss_pred HHHHHHHHHHCCCEEEEECCCCHH T ss_conf 999999999789959991899899 No 68 >>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A (A:21-240) Probab=26.42 E-value=42 Score=14.27 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=29.5 Q ss_pred CCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCC Q ss_conf 873899807720000-35178999986898799972788 Q gi|254780202|r 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 84 ~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt 121 (211) ....+++||+..+.. ++.++++.|.+.|.++..+-++. T Consensus 89 ~~~~~~~~g~~~~~~r~~~~~~~~L~~~Ga~v~~~~~~~ 127 (220) T 2o0b_A 89 GSVPVTFDGDQQARGRPIAPLLDALRELGVAVDGTGLPF 127 (220) T ss_dssp SSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEECSSSSE T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEECCCCCE T ss_conf 440264126653110457878776530471575684761 No 69 >>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:1-194,A:525-678,A:759-784) Probab=26.35 E-value=42 Score=14.26 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=15.1 Q ss_pred CCEEEEECCCCCCC-CCC-HHHHHHHHCCCEEEEE Q ss_conf 73899807720000-351-7899998689879997 Q gi|254780202|r 85 GRYCVLTGGEPLLQ-VDV-PLIQALNKRGFEIAVE 117 (211) Q Consensus 85 ~~~VviTGGEPllq-~l~-~L~~~l~~~g~~v~IE 117 (211) .+.+.+.|+.|+.+ +.. .+.+.|.+..+-|.++ T Consensus 219 ik~l~~~~~Np~~~~~~~~~~~~al~~~d~~V~~d 253 (374) T 1kqf_A 219 VTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVID 253 (374) T ss_dssp CCEEEEESCCHHHHSSSHHHHHHHHTTCSEEEEEE T ss_pred CCEEEEECCCHHHCCCCHHHHHHHHHCCCEEEEEE T ss_conf 62799847862304858899999973688599973 No 70 >>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} (A:238-291) Probab=26.32 E-value=29 Score=15.36 Aligned_cols=24 Identities=25% Similarity=0.828 Sum_probs=17.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 368888775752325888660789999999998 Q gi|254780202|r 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 (211) Q Consensus 44 ~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~ 76 (211) .+.|.||-+.|. ++.+++..++.+ T Consensus 28 ev~C~FC~~~Y~---------f~~~el~~l~~~ 51 (54) T 1vzy_A 28 EAVCHFCNEKYL---------FTKEELEGLRDQ 51 (54) T ss_dssp EEECTTTCCEEE---------EEHHHHHHHHHH T ss_pred EEEEECCCCEEE---------ECHHHHHHHHHH T ss_conf 999768799898---------799999999865 No 71 >>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264) Probab=25.81 E-value=21 Score=16.30 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=12.9 Q ss_pred CHHHHHHHHCCCEEEEECCCC Q ss_conf 178999986898799972788 Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt 121 (211) .+.++.|+++|+++.|=||++ T Consensus 27 ~e~l~~l~~~G~~~~i~Tn~s 47 (154) T 3epr_A 27 ERFIERLQEKGIPYMLVTNNT 47 (154) T ss_dssp HHHHHHHHHHTCCEEEEECCC T ss_pred HHHHHHHHHCCCCEEEEECCC T ss_conf 999999998799889993899 No 72 >>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:1-34,A:262-429) Probab=25.64 E-value=43 Score=14.17 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=22.6 Q ss_pred CCCCEEEEECCCCCCCC--------CCHH----HHHHHH-CCC-EEEEECCCCCCC Q ss_conf 78738998077200003--------5178----999986-898-799972788866 Q gi|254780202|r 83 KEGRYCVLTGGEPLLQV--------DVPL----IQALNK-RGF-EIAVETNGTIEP 124 (211) Q Consensus 83 ~~~~~VviTGGEPllq~--------l~~L----~~~l~~-~g~-~v~IETnGt~~~ 124 (211) ...+.+.|.||||...- .-+| ...+.. .+. -...-|-|.-=+ T Consensus 86 ~~~P~~li~GGEtTV~v~G~G~GGRNQElaL~~a~~l~~~~~v~~LSagTDG~DGp 141 (202) T 2b8n_A 86 LKKPAALIFGGETVVHVKGNGIGGRNQELALSAAIALEGIEGVILCSAGTDGTDGP 141 (202) T ss_dssp SCSSEEEEEEECCBCCCCSCCCCCHHHHHHHHHHHHTTTCTTEEEEEEETTSCCSS T ss_pred CCCCEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC T ss_conf 78975799777678870588888853899999999725899979999665788789 No 73 >>2obb_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:) Probab=25.36 E-value=44 Score=14.14 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=13.8 Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHCCC Q ss_conf 87389980772000035178999986898 Q gi|254780202|r 84 EGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 (211) Q Consensus 84 ~~~~VviTGGEPllq~l~~L~~~l~~~g~ 112 (211) +.+.+++||+.-... ..+++.+...|+ T Consensus 40 G~~i~i~Tn~~~~~~--~~~l~~~~~~~~ 66 (142) T 2obb_A 40 KHRLILWSVREGELL--DEAIEWCRARGL 66 (142) T ss_dssp TCEEEECCSCCHHHH--HHHHHHHHTTTC T ss_pred CCEEEEEECCCCCCH--HHHHHHHHHHCC T ss_conf 993999957887317--999999999599 No 74 >>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} (A:1-56,A:179-509) Probab=24.88 E-value=45 Score=14.08 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=40.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-HHHHHHHHCCCEEEEECCC Q ss_conf 886607899999999987521667873899807720000351-7899998689879997278 Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 (211) Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~-~L~~~l~~~g~~v~IETnG 120 (211) .....++++...+.+++.....+... .+....+.|..+.+. .+.+.|++.|+++.+++-- T Consensus 199 ~~~~~~d~~kAk~lL~eaGy~~g~~~-~l~~~~~~~~~~~~a~~i~~~L~~vGi~v~v~~~~ 259 (387) T 1uqw_A 199 YKPWPYDPVKARELLKEAGYPNGFST-TLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAXD 259 (387) T ss_dssp CCCCCCCHHHHHHHHHHHTCTTCEEE-EEEEECCSSSHHHHHHHHHHHHHHTTEEEEEEEEC T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 78888899999999885312222222-11122223315689999999997466424899806 No 75 >>3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD superfamily, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:1-19,A:105-234) Probab=24.63 E-value=45 Score=14.05 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=35.9 Q ss_pred EEEEECCCCC-CCC-CCHHHHHHHHCC-CEEEEECCCCCC----------CCCCCEEEEECCCCCCCCCCCCHH Q ss_conf 8998077200-003-517899998689-879997278886----------678850798416777410012123 Q gi|254780202|r 87 YCVLTGGEPL-LQV-DVPLIQALNKRG-FEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQ 147 (211) Q Consensus 87 ~VviTGGEPl-lq~-l~~L~~~l~~~g-~~v~IETnGt~~----------~~~~~d~it~SPK~~~~~~~~~~~ 147 (211) .|.+....-| +++ ..++++.|+++| +++.|=|||... +...+|-+..++|..-+....... T Consensus 10 ~~~~~~~~~~~l~pg~~e~L~~Lk~~g~~~l~ivTn~~~~~~~~~l~~~gl~~~F~~i~~~~kp~p~~~~~a~~ 83 (149) T 3ddh_A 10 VIAFDADDTLELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSPYFDHIEVXSDKTEKEYLRLLS 83 (149) T ss_dssp EEEECCBTTTCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHH T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99997889784676169999886503303420334430666655677652200012211123688799999998 No 76 >>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} (A:95-251) Probab=24.27 E-value=24 Score=15.92 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=49.0 Q ss_pred EEECCCCCCCCCCCCE--EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 7751055840137315--99976898887555333323688887757523258886607899999999987521667873 Q gi|254780202|r 9 IFLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 (211) Q Consensus 9 iF~SiQGEG~~~G~p~--vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 86 (211) ++.++.||....|... .++|-.|+++ .|. +...+.+++.+.+.+. ... T Consensus 8 ll~~~~gd~H~lGl~~va~~l~~~G~~V------------------~~l------G~~~p~e~~~~~~~~~------~pd 57 (157) T 3bul_A 8 VIATVKGDVHDIGKNIVGVVLQCNNYEI------------------VDL------GVMVPAEKILRTAKEV------NAD 57 (157) T ss_dssp EEEEBTTCCCCHHHHHHHHHHHTTTCEE------------------EEC------CSSBCHHHHHHHHHHH------TCS T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCEEE------------------EEE------CCCCCHHHHHHHHHHH------CCC T ss_conf 9995588712688899999998689479------------------940------3789999999999971------997 Q ss_pred EEEEECCCC-CCCCCCHHHHHHHHCCCEEEEECCC Q ss_conf 899807720-0003517899998689879997278 Q gi|254780202|r 87 YCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120 (211) Q Consensus 87 ~VviTGGEP-llq~l~~L~~~l~~~g~~v~IETnG 120 (211) .|.||---+ .+.....+++.+++.+..+.+=--| T Consensus 58 ~V~iS~~~~~~~~~~~~~~~~lr~~~~~~~i~vgG 92 (157) T 3bul_A 58 LIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGG 92 (157) T ss_dssp EEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEEES T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 89998630410899999999999629875288733 No 77 >>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii} (A:98-149) Probab=24.21 E-value=20 Score=16.40 Aligned_cols=13 Identities=15% Similarity=0.626 Sum_probs=10.1 Q ss_pred CCCCCCCCCCCCC Q ss_conf 3688887757523 Q gi|254780202|r 44 SAQCRFCDTDFVG 56 (211) Q Consensus 44 ~~~C~~CDT~y~~ 56 (211) ..+|.|||+.+.. T Consensus 36 ~lrC~YCe~~~~~ 48 (52) T 2yww_A 36 KIRCYYCEKFLNE 48 (52) T ss_dssp EEEETTTCCBCSS T ss_pred EEEEECCCCCCHH T ss_conf 9980789989112 No 78 >>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} (A:135-248) Probab=24.01 E-value=46 Score=13.97 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=19.2 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 8998077200003517899998689879997278886 Q gi|254780202|r 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) .++|-||..-+. ....|...|.+|++=+++... T Consensus 24 v~ViG~g~~a~e----~A~~l~~~g~~Vtii~~~~~~ 56 (114) T 2a87_A 24 IAVIGGGDSAME----EATFLTRFARSVTLVHRRDEF 56 (114) T ss_dssp EEEECSSHHHHH----HHHHHTTTCSEEEEECSSSSC T ss_pred EEEECCCHHHHH----HHHHHHHCCCEEEEEECCCCC T ss_conf 999888889999----999999659989999816510 No 79 >>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} (A:1-26,A:182-309) Probab=23.44 E-value=47 Score=13.90 Aligned_cols=35 Identities=20% Similarity=0.483 Sum_probs=17.0 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 05584013731599976898887555333323688887757 Q gi|254780202|r 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53 (211) Q Consensus 13 iQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~ 53 (211) |.++|...|.+-.+ |.| |...=.-.-.+|++|.+. T Consensus 42 L~~~~~~~G~R~L~-----Csl-C~teW~~~R~~Cp~CG~~ 76 (154) T 2fiy_A 42 IRQGGKETGLRYLS-----CSL-CACEWHYVRIKCSHCEES 76 (154) T ss_dssp EEC----CCEEEEE-----ETT-TCCEEECCTTSCSSSCCC T ss_pred EECCCCCCCCEEEE-----CCC-CCCCCCEECCCCCCCCCC T ss_conf 01367778866887-----799-888552327768499999 No 80 >>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* (A:83-171,A:394-484) Probab=23.32 E-value=48 Score=13.89 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=35.8 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-CC-CHHHHHHHHCCCEEEEECCCCC Q ss_conf 7899999999987521667873899807720000-35-1789999868987999727888 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VD-VPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-~l-~~L~~~l~~~g~~v~IETnGt~ 122 (211) +....+.+.++.. ..+..+.+.+.|+.|+.+ +. ..+.+.|++..+-|.++..-|- T Consensus 111 ~~~~~~~~~i~~~---~~g~ik~l~~~g~Np~~s~p~~~~~~~al~kld~vV~~d~~~te 167 (180) T 2vpz_A 111 TAIQELIEPMITG---EPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQE 167 (180) T ss_dssp CCTTTTTSHHHHC---CSSCCCCEEEESCCHHHHSSCHHHHHHHHHTCSCEEEEESSCCT T ss_pred CCHHHHHHHHHCC---CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCH T ss_conf 3288899999708---87773799997776434333121134410245623641243774 No 81 >>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:1-26,A:113-258) Probab=22.69 E-value=49 Score=13.80 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=19.6 Q ss_pred CCCC-CCHHHHHHHHCCCEEEEECCCCC Q ss_conf 0003-51789999868987999727888 Q gi|254780202|r 96 LLQV-DVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 96 llq~-l~~L~~~l~~~g~~v~IETnGt~ 122 (211) .+++ ..++++.|+++|+++.|=||+.. T Consensus 25 ~~~PGv~e~L~~L~~~G~~v~ivTn~~~ 52 (172) T 3iru_A 25 TIIPGWKEVFDKLIAQGIKVGGNTGYGP 52 (172) T ss_dssp TBCTTHHHHHHHHHHTTCEEEEECSSCH T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCH T ss_conf 6757579999999852360899807857 No 82 >>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} (A:1-50,A:198-362) Probab=22.62 E-value=49 Score=13.79 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=21.3 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHCCCEEEE-----ECCC Q ss_conf 899807720000351789999868987999-----7278 Q gi|254780202|r 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAV-----ETNG 120 (211) Q Consensus 87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~I-----ETnG 120 (211) ..+++||+|+-. .+.+.+.+.|.++.- ||.+ T Consensus 149 r~i~~gGa~l~~---~l~~~~~~~g~~i~~~YG~TEt~~ 184 (215) T 1v25_A 149 RRLVVGGSAAPR---SLIARFERMGVEVRQGYGLTETSP 184 (215) T ss_dssp CEEEECSSCCCH---HHHHHHHHTTCEEEEEEECGGGSS T ss_pred EEEEEECCCCCH---HHHHHHHHHCCEEEEECCCCCCCC T ss_conf 599990688999---999999871987664026554466 No 83 >>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate transcarbamylase, alanosine, carbamyl phosphate, T-state; HET: AL0; 2.00A {Escherichia coli} (B:94-153) Probab=22.06 E-value=19 Score=16.66 Aligned_cols=12 Identities=25% Similarity=1.212 Sum_probs=9.3 Q ss_pred CCCCCCCCCCCC Q ss_conf 368888775752 Q gi|254780202|r 44 SAQCRFCDTDFV 55 (211) Q Consensus 44 ~~~C~~CDT~y~ 55 (211) .++|.|||..++ T Consensus 42 ~lrC~YCe~~~~ 53 (60) T 2air_B 42 ALKCKYCEKEFS 53 (60) T ss_dssp EEEETTTCCEEE T ss_pred EEEEECCCCCCC T ss_conf 899478897914 No 84 >>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306) Probab=21.91 E-value=51 Score=13.70 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=34.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 6078999999999875216678738998077200003517899998689879997278886 Q gi|254780202|r 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ..++.+++.+.++....... ....+..-+.+|. -...++++.|+++|+++.|=||++.. T Consensus 7 ~~l~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~-~g~~e~L~~L~~~g~~~~ivTn~~~~ 65 (166) T 2oyc_A 7 ERLRGAALRDVLGRAQGVLF-DCDGVLWNGERAV-PGAPELLERLARAGKAALFVSNNSRR 65 (166) T ss_dssp EECCHHHHHHHHHHCSEEEE-CSBTTTEETTEEC-TTHHHHHHHHHHTTCEEEEEECCCSS T ss_pred CCCCHHHHHHHHHCCCEEEE-ECCCCEEECCCCC-CHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 22898789999967999999-6988128899168-10999999999779988999589999 No 85 >>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240) Probab=21.69 E-value=51 Score=13.67 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=23.3 Q ss_pred ECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 07720000351789999868987999727888 Q gi|254780202|r 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 91 TGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) |.--++.--..++++.|+++|+++.|=||+.. T Consensus 18 ~~~~~l~pGv~e~L~~Lk~~G~~l~i~Tn~~~ 49 (152) T 2hi0_A 18 TIKTGPFPGILDLXKNLRQKGVKLAVVSNKPN 49 (152) T ss_dssp CSSCEECTTHHHHHHHHHHTTCEEEEEEEEEH T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 80376778546899998641245211356736 No 86 >>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250) Probab=21.47 E-value=44 Score=14.14 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=17.0 Q ss_pred ECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 07720000351789999868987999727888 Q gi|254780202|r 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 91 TGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) .|++|.-. ..+.++.|++.|+++.|=||.+. T Consensus 16 ~~~~~~~~-~~e~i~~l~~~G~~~~i~Tn~s~ 46 (144) T 2c4n_A 16 HDNVAVPG-AAEFLHGIMDKGLPLVLLTNYPS 46 (144) T ss_dssp ETTEECTT-HHHHHHHHHHTTCCEEEEESCCS T ss_pred ECCCCCHH-HHHHHHHHHHCCCCEEEEECCCC T ss_conf 79986821-99999999977995899928998 No 87 >>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235) Probab=21.42 E-value=52 Score=13.63 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=24.7 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 899807720000351789999868987999727888 Q gi|254780202|r 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 87 ~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) .|++.-=.-+.-...++++.|+++|+++.|=||++. T Consensus 6 ~~~~~~~~~l~pgv~e~L~~L~~~G~~l~i~TN~~~ 41 (150) T 2om6_A 6 LVTFDVWNTVLEGTKEALQFVKERGLKTAVIGNVXF 41 (150) T ss_dssp EEEECCBTTBCTTHHHHHHHHHHTTCEEEEEECCCS T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC T ss_conf 898838898586789999999871881433115776 No 88 >>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/beta/alpha) sandwich; NMR {Escherichia coli CFT073} (A:) Probab=21.16 E-value=44 Score=14.09 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.6 Q ss_pred EEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 8998077200003-51789999868987999 Q gi|254780202|r 87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 87 ~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) .+.+|+...|.+. .....+.|.++||..++ T Consensus 56 ~l~L~~~kkLA~ad~~~V~~~L~~qGfyLQm 86 (110) T 2h7a_A 56 ILPLDGRKKLVNADIEKVKQALTEQGYYLQL 86 (110) T ss_dssp EECSSSCCCCSSSCHHHHHHHHHHTSEEEEC T ss_pred EEECCCCCHHHCCCHHHHHHHHHHCCEEEEC T ss_conf 9712886612119899999999868878978 No 89 >>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, allosteric, holoenzyme; 2.85A {Moritella profunda} (D:99-153) Probab=21.15 E-value=20 Score=16.45 Aligned_cols=12 Identities=25% Similarity=1.118 Sum_probs=9.0 Q ss_pred CCCCCCCCCCCC Q ss_conf 368888775752 Q gi|254780202|r 44 SAQCRFCDTDFV 55 (211) Q Consensus 44 ~~~C~~CDT~y~ 55 (211) .+||.|||..|. T Consensus 36 ~lrC~YCe~~~~ 47 (55) T 2be7_D 36 GLKCKYCEKTFS 47 (55) T ss_dssp EEEETTTCCEEE T ss_pred EEEEECCCCCCC T ss_conf 899168997925 No 90 >>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.97 E-value=26 Score=15.71 Aligned_cols=11 Identities=36% Similarity=1.084 Sum_probs=7.9 Q ss_pred CCCCCCCCCCC Q ss_conf 36888877575 Q gi|254780202|r 44 SAQCRFCDTDF 54 (211) Q Consensus 44 ~~~C~~CDT~y 54 (211) ...|+|||.-| T Consensus 9 A~KCPyCd~~F 19 (37) T 2elp_A 9 AMKCPYCDFYF 19 (37) T ss_dssp CEECSSSSCEE T ss_pred CCCCCCCHHHH T ss_conf 31487304788 No 91 >>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima} (A:245-302) Probab=20.71 E-value=54 Score=13.54 Aligned_cols=27 Identities=22% Similarity=0.677 Sum_probs=18.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 236888877575232588866078999999999875 Q gi|254780202|r 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 (211) Q Consensus 43 ~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~ 78 (211) -.+.|.||-+.|. ++.+++..++.+.. T Consensus 27 iev~C~fC~~~Y~---------f~~~el~~l~~~~~ 53 (58) T 1vq0_A 27 GEVVCKWCNTRYV---------FSEEELEELLKFKV 53 (58) T ss_dssp EEEECTTTCCEEE---------ECHHHHHHHHHHHH T ss_pred EEEEEECCCCEEE---------ECHHHHHHHHHHCC T ss_conf 3999989899798---------69999999997425 No 92 >>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} (A:1-12,A:99-220) Probab=20.59 E-value=54 Score=13.52 Aligned_cols=23 Identities=17% Similarity=0.531 Sum_probs=19.6 Q ss_pred CHHHHHHHHCCCEEEEECCCCCC Q ss_conf 17899998689879997278886 Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~ 123 (211) .++++.|+++|+++.|=||+... T Consensus 15 ~~~L~~Lk~~g~~i~i~Tn~~~~ 37 (134) T 2zg6_A 15 LEFLEGLKSNGYKLALVSNASPR 37 (134) T ss_dssp HHHHHHHHTTTCEEEECCSCHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCC T ss_conf 99999855122010000475321 No 93 >>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm, detoxification, magnesium, metal-binding, peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* (A:1-16,A:101-227) Probab=20.52 E-value=54 Score=13.51 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=25.1 Q ss_pred ECCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 077200003-517899998689879997278886 Q gi|254780202|r 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 91 TGGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) .|--.|+++ ..++++.|+++|+++.|=||+... T Consensus 11 ~~~~~~~~pgv~e~L~~L~~~g~~i~i~Tn~~~~ 44 (143) T 3i28_A 11 DGVLALINRPMLQAALMLRKKGFTTAILTNTWLD 44 (143) T ss_dssp BTTTEEECHHHHHHHHHHHHTTCEEEEEECCCCC T ss_pred CCCEECCCCHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9971758804999999999779949998189632 No 94 >>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:95-178) Probab=20.41 E-value=54 Score=13.50 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=28.5 Q ss_pred CCCCHHHHHHHH------HHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEE Q ss_conf 607899999999------98752166787389980772000035-178999986898799 Q gi|254780202|r 63 GRYNVDQLADLI------EEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 (211) Q Consensus 63 ~~~~~~~i~~~i------~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~ 115 (211) ..++.++|.+.- .++...+ -..||+++.. ..+.+.+++.|+.+. T Consensus 22 ~dlt~~ei~~lTGLs~~~A~~A~~R---------e~SEp~~w~~~e~f~~~l~~~G~~~~ 72 (84) T 2zos_A 22 GNSTKEEIEKFTGXPPELVPLAXER---------EYSETIFEWSRDGWEEVLVEGGFKVT 72 (84) T ss_dssp GGSCHHHHHHHHCCCTTTHHHHHCC---------SSCEEEEECSSSCHHHHHHHTTCEEE T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHCCEEEE T ss_conf 2022888866515876778999874---------41387765567789887764272687 No 95 >>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} (A:152-269) Probab=20.25 E-value=55 Score=13.47 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=36.0 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECC---------CCCCCC--CCHHHHHHHHCCCEEEEECCCCC Q ss_conf 78999999999875216678738998077---------200003--51789999868987999727888 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGG---------EPLLQV--DVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGG---------EPllq~--l~~L~~~l~~~g~~v~IETnGt~ 122 (211) -+.+++...|+.....+ ....-+.++|| .|.+-. +..+++..++.|++|.+.++|-. T Consensus 13 ~~~~~~~~~vk~~~~~g-~d~ik~~~~~~~~~~~~~~~~~~~~~eel~~~v~~A~~~G~~v~~Ha~g~~ 80 (118) T 3gnh_A 13 DSPDEARKAVRTLKKYG-AQVIXICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGAS 80 (118) T ss_dssp CSHHHHHHHHHHHHHTT-CSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHH T ss_pred CCHHHHHHHHHHHHHHC-CHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHH T ss_conf 30999999999877522-103333202444433346655557899999999999970990788516505 No 96 >>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} (A:) Probab=20.22 E-value=55 Score=13.47 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=18.7 Q ss_pred EEEECCCC-CCCCC-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 47751055-84013-----73159997689888755533332368888775 Q gi|254780202|r 8 EIFLTLQG-EGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52 (211) Q Consensus 8 EiF~SiQG-EG~~~-----G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT 52 (211) ++-+.+|. .|.-+ =-..+.|||.|. |..|=| T Consensus 15 ~irp~l~~~dGGdielv~v~~~~V~V~l~Ga--------------C~gCpT 51 (74) T 1th5_A 15 EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGP--------------AAVVRT 51 (74) T ss_dssp TTHHHHTTTTCCCCCCCEEETTEEEECCCSS--------------SSSSSS T ss_pred HHCHHHHHCCCCEEEEEEECCCEEEEEECCC--------------CCCCHH T ss_conf 8563040268971999995299999995588--------------765405 Done!