Query         gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 211
No_of_seqs    111 out of 1224
Neff          7.0 
Searched_HMMs 23785
Date          Mon May 23 14:07:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780202.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3c8f_A Pyruvate formate-lyase   99.8 3.3E-18 1.4E-22  142.8  12.8  119    5-140     7-135 (245)
  2 2yx0_A Radical SAM enzyme; pre  99.0 2.4E-09   1E-13   82.7  11.3   57   84-140   141-207 (342)
  3 2z2u_A UPF0026 protein MJ0257;  98.9 5.4E-09 2.3E-13   80.3   9.2   99   29-138    59-186 (311)
  4 1tv8_A MOAA, molybdenum cofact  98.9   2E-08 8.2E-13   76.5  10.8  102   21-136    10-128 (340)
  5 3can_A Pyruvate-formate lyase-  98.7 7.7E-08 3.2E-12   72.5   8.2   55   87-141     6-68  (182)
  6 2a5h_A L-lysine 2,3-aminomutas  98.2 9.1E-06 3.8E-10   58.4   9.3   88   19-122   113-205 (416)
  7 3iix_A Biotin synthetase, puta  96.8   0.008 3.3E-07   38.5   8.8   91   30-136    61-161 (348)
  8 2qgq_A Protein TM_1862; alpha-  95.9   0.049 2.1E-06   33.1   8.5   84   21-121     2-94  (304)
  9 1r30_A Biotin synthase; SAM ra  92.2    0.67 2.8E-05   25.4   9.5   82   23-119    66-155 (369)
 10 1olt_A Oxygen-independent copr  83.9     1.4   6E-05   23.2   4.7   85   24-121    54-149 (457)
 11 2jz8_A Uncharacterized protein  79.1    0.85 3.6E-05   24.7   2.2   38   12-59     26-63  (87)
 12 2jvm_A Uncharacterized protein  72.0     1.7 7.2E-05   22.7   2.2   37   11-56     29-65  (80)
 13 2jrr_A Uncharacterized protein  56.3       3 0.00013   21.0   1.0   36   12-57     17-53  (67)
 14 2pqc_A 3-phosphoshikimate 1-ca  55.2      11 0.00044   17.3   4.5   38   86-123   110-148 (445)
 15 3c6f_A YETF protein; uncharact  55.1     4.8  0.0002   19.6   1.9   44   84-127    14-71  (153)
 16 1ejd_A MURA, EPT, UDP-N-acetyl  53.7     8.3 0.00035   18.0   2.9   37   86-123   107-144 (419)
 17 1cbf_A Cobalt-precorrin-4 tran  47.9      14 0.00057   16.5   5.6   51   65-118    77-128 (285)
 18 2z6r_A Diphthine synthase; met  46.3      14 0.00061   16.4   5.6   36   84-119    77-113 (265)
 19 2kyr_A Fructose-like phosphotr  41.3      14 0.00057   16.6   2.4   25  101-125    26-50  (111)
 20 1wde_A Probable diphthine synt  39.7      18 0.00076   15.7   4.7   36   84-119    83-119 (294)
 21 3kgf_A Probable 3-deoxy-D-arab  39.6      18 0.00076   15.7   4.3   54   60-114   308-363 (464)
 22 2r48_A Phosphotransferase syst  38.7      12 0.00051   16.9   1.8   24  102-125    24-47  (106)
 23 2pr7_A Haloacid dehalogenase/e  37.6      18 0.00077   15.7   2.6   26   98-123    21-46  (137)
 24 2r4q_A Phosphotransferase syst  35.8      12 0.00051   16.9   1.5   25  101-125    23-47  (106)
 25 1pjq_A CYSG, siroheme synthase  35.7      21 0.00087   15.3   3.7   49   66-117   278-327 (457)
 26 1njh_A Protein YOJF; structura  35.5     9.8 0.00041   17.5   1.0   25  100-124    12-37  (119)
 27 3lu1_A WBGU; rossman fold, epi  32.0      21 0.00088   15.3   2.2   28   85-114    38-65  (364)
 28 1vhv_A Diphthine synthase; str  30.1      25  0.0011   14.7   4.3   37   85-121    88-125 (268)
 29 1th5_A NIFU1; iron-sulfur clus  29.9      20 0.00086   15.3   1.8   10   23-32     36-45  (74)
 30 2e0n_A Precorrin-2 C20-methylt  29.2      26  0.0011   14.6   4.9   34   84-117    96-130 (259)
 31 3hh1_A Tetrapyrrole methylase   28.9      27  0.0011   14.6   4.8   31   86-116    81-113 (117)
 32 3ib6_A Uncharacterized protein  28.7      27  0.0011   14.5   3.0   23  100-122    39-61  (189)
 33 3kwp_A Predicted methyltransfe  27.8      28  0.0012   14.4   4.3   29   88-116    93-122 (296)
 34 3i4t_A Diphthine synthase; nia  25.7      30  0.0013   14.2   2.9   35   85-119    96-131 (292)
 35 1rf6_A 5-enolpyruvylshikimate-  25.0      31  0.0013   14.1   4.2   35   86-120   107-142 (427)
 36 3nvs_A 3-phosphoshikimate 1-ca  24.5      32  0.0013   14.0   5.8   40   84-123   133-174 (450)
 37 2yrk_A Zinc finger homeobox pr  24.0      25  0.0011   14.7   1.4   14   44-57     13-26  (55)
 38 3c8u_A Fructokinase; YP_612366  23.6      33  0.0014   13.9   3.7   53   65-117     2-56  (208)
 39 3lqk_A Dipicolinate synthase s  23.4      33  0.0014   13.9   4.0   35   88-122    12-47  (201)
 40 1r7h_A NRDH-redoxin; thioredox  23.3      12 0.00051   16.9  -0.3   48   46-97     10-62  (75)
 41 2w3z_A Putative deacetylase; P  22.7      34  0.0014   13.8   5.2   47   68-120   123-169 (311)
 42 2h7a_A Hypothetical protein YC  22.7      28  0.0012   14.4   1.4   30   87-116    56-86  (110)
 43 2fiy_A Protein FDHE homolog; F  22.1      35  0.0015   13.7   2.9   13  187-199   284-296 (309)
 44 2elp_A Zinc finger protein 406  21.6      18 0.00074   15.8   0.2   10   45-54     10-19  (37)

No 1  
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.78  E-value=3.3e-18  Score=142.82  Aligned_cols=119  Identities=24%  Similarity=0.337  Sum_probs=92.6

Q ss_pred             CEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             12447751055840137315999768988875553333236888877575232588866078999999999875216678
Q gi|254780202|r    5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE   84 (211)
Q Consensus         5 ~i~EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~   84 (211)
                      .-.|.|.|++|||.+   -++|  |+|||+           +|.||....+ +....+..++.+++.+.+.+........
T Consensus         7 ~~~~~~s~~dg~G~r---~~vf--~~GCN~-----------~C~~C~n~~~-~~~~~~~~~~~~e~~~ei~~~~~~~~~~   69 (245)
T 3c8f_A            7 HSFESCGTVDGPGIR---FITF--FQGCLM-----------RCLYCHNRDT-WDTHGGKEVTVEDLMKEVVTYRHFMNAS   69 (245)
T ss_dssp             EEEEEEECTTSSSEE---EEEE--ESCCSC-----------CCTTCSCGGG-CCTTCSEEECHHHHHHHHGGGHHHHTST
T ss_pred             EEEEEECEEECCCCE---EEEE--CCCCCC-----------CCCCCCCHHH-HCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             357995549489638---9998--787478-----------8989997134-1867991889999999999999975257


Q ss_pred             CCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCCCC--------CCCEEEEECCCCCCC
Q ss_conf             738998077200003--51789999868987999727888667--------885079841677741
Q gi|254780202|r   85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP--------QGIDWICVSPKAGCD  140 (211)
Q Consensus        85 ~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~~~--------~~~d~it~SPK~~~~  140 (211)
                      ...|++|||||++|.  +.++++.+++.|+++.++|||+....        ..+|++.+|.|...+
T Consensus        70 ~~~v~~sGGEP~l~~~~l~~l~~~~k~~g~~~~l~TnG~~~~~~~~~~~l~~~~d~v~id~~~~~~  135 (245)
T 3c8f_A           70 GGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMND  135 (245)
T ss_dssp             TCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSH
T ss_pred             CCEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCH
T ss_conf             875853555653469999999998886438479977886555345666652357579984354678


No 2  
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.05  E-value=2.4e-09  Score=82.71  Aligned_cols=57  Identities=30%  Similarity=0.305  Sum_probs=43.8

Q ss_pred             CCCEEEEEC-CCCCCCC-CCHHHHHHHHCCCEEEEECCCCCCC--------CCCCEEEEECCCCCCC
Q ss_conf             873899807-7200003-5178999986898799972788866--------7885079841677741
Q gi|254780202|r   84 EGRYCVLTG-GEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP--------PQGIDWICVSPKAGCD  140 (211)
Q Consensus        84 ~~~~VviTG-GEPllq~-l~~L~~~l~~~g~~v~IETnGt~~~--------~~~~d~it~SPK~~~~  140 (211)
                      ..++|+++| |||++++ +.+|++.+++.|+.+.+-|||+++-        ...+|++.+|-+...+
T Consensus       141 ~~~hvais~~GEPll~p~l~eli~~~~~~gi~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~  207 (342)
T 2yx0_A          141 NPTHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDI  207 (342)
T ss_dssp             SCCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSH
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf             8767999578775345559999999986396499965886611799999874788679983578998


No 3  
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=98.93  E-value=5.4e-09  Score=80.35  Aligned_cols=99  Identities=21%  Similarity=0.212  Sum_probs=60.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCHHHHHHHHHHH----HHC--------------CCCC
Q ss_conf             68988875553333236888877------57523258886607899999999987----521--------------6678
Q gi|254780202|r   29 FSGCNLWSGREQDRLSAQCRFCD------TDFVGIQGTKGGRYNVDQLADLIEEQ----WIT--------------GEKE   84 (211)
Q Consensus        29 l~GCnL~c~~~~~~~~~~C~~CD------T~y~~~~~~~~~~~~~~~i~~~i~~~----~~~--------------~~~~   84 (211)
                      +++||+           +|.||=      ....+.........+++++++.+.+.    ...              ....
T Consensus        59 ~~~CN~-----------rC~fC~r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~~ea~~  127 (311)
T 2z2u_A           59 VIWCQQ-----------NCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALE  127 (311)
T ss_dssp             SSCCSC-----------C----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTS
T ss_pred             CCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
T ss_conf             300208-----------794776988787777731013445489999999999999999765326775401566665237


Q ss_pred             CCEEEEE-CCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCCC---CCCCEEEEECCCCC
Q ss_conf             7389980-77200003-5178999986898799972788866---78850798416777
Q gi|254780202|r   85 GRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP---PQGIDWICVSPKAG  138 (211)
Q Consensus        85 ~~~VviT-GGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~~---~~~~d~it~SPK~~  138 (211)
                      .+++.++ ||||++++ +.+|++.+++.|+.+.+-|||+++-   ....|.+.+|-...
T Consensus       128 ~~~iais~~GEP~l~p~l~eli~~~~~~gi~~~l~TNG~~~d~l~~l~~~~l~vSlDa~  186 (311)
T 2z2u_A          128 PKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIEPTQLYISLDAY  186 (311)
T ss_dssp             CCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHCCCSEEEEECCCS
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCEEEEEECCC
T ss_conf             63798626887304789999999998759727754154344789870551588630479


No 4  
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=98.88  E-value=2e-08  Score=76.54  Aligned_cols=102  Identities=26%  Similarity=0.275  Sum_probs=68.1

Q ss_pred             CCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             731599976---89888755533332368888775752325----88866078999999999875216678738998077
Q gi|254780202|r   21 GRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG   93 (211)
Q Consensus        21 G~p~vFiRl---~GCnL~c~~~~~~~~~~C~~CDT~y~~~~----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG   93 (211)
                      |||--.+|+   ..|||           +|.||-.......    ......++.+++..+++++...   +...|.+|||
T Consensus        10 ~R~~~~lri~IT~rCNL-----------~C~~C~~~~~~~~~~~~~~~~~~Ls~eei~~ii~~~~~~---gv~~i~ltGG   75 (340)
T 1tv8_A           10 GRPIRDLRLSVTDRCNF-----------RCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL---GVKKIRITGG   75 (340)
T ss_dssp             SCBCCEEEEECCSCCSC-----------CCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred             CCCCCCEEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEECCC
T ss_conf             99038579971552178-----------896889640067777767610348999999999999876---9809996388


Q ss_pred             CCCCCC-CCHHHHHHHHCC-CEEEEECCCCCCCC--------CCCEEEEECCC
Q ss_conf             200003-517899998689-87999727888667--------88507984167
Q gi|254780202|r   94 EPLLQV-DVPLIQALNKRG-FEIAVETNGTIEPP--------QGIDWICVSPK  136 (211)
Q Consensus        94 EPllq~-l~~L~~~l~~~g-~~v~IETnGt~~~~--------~~~d~it~SPK  136 (211)
                      |||+.+ +..++..++..+ ..+.+=|||+.-..        ..++.|.+|--
T Consensus        76 EPllr~d~~~~i~~~~~~~~~~~~~~Tng~ll~~~~~~~L~~~gl~~v~ISld  128 (340)
T 1tv8_A           76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLD  128 (340)
T ss_dssp             CGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECC
T ss_pred             CHHCCHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf             62007006999987521022102421078653421389999849988850467


No 5  
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=98.67  E-value=7.7e-08  Score=72.50  Aligned_cols=55  Identities=20%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             EEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCCC------CCCCEEEEECCCCCCCC
Q ss_conf             8998077200003--5178999986898799972788866------78850798416777410
Q gi|254780202|r   87 YCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP------PQGIDWICVSPKAGCDL  141 (211)
Q Consensus        87 ~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~~------~~~~d~it~SPK~~~~~  141 (211)
                      -|+|||||||+|+  +.++++.+++.|+.+.|.|||++..      .+..|++.+|.|...+.
T Consensus         6 gVt~sGGEP~l~~~~l~ei~~~~k~~g~~~~l~TNG~l~~e~~~~~~~~~d~~~~sl~~~~~e   68 (182)
T 3can_A            6 GVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLIDLKSMDST   68 (182)
T ss_dssp             CEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCHH
T ss_pred             CEEEEECCHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHEECCCCCCCHH
T ss_conf             689983035098879999999998879919998177524899998543223254142336899


No 6  
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=98.21  E-value=9.1e-06  Score=58.44  Aligned_cols=88  Identities=17%  Similarity=0.303  Sum_probs=59.9

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf             13731599976898887555333323688887757523258886607899999999987521667873899807720000
Q gi|254780202|r   19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ   98 (211)
Q Consensus        19 ~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq   98 (211)
                      |.++ +.|.=...||+           +|.||=-..-  .+.....++.+++...++.+..  ....+-|.|||||||+-
T Consensus       113 Y~~r-vll~vT~~Cn~-----------~CrYC~R~~~--~~~~~~~l~~~ei~~~i~yi~~--~~~I~~V~lTGGePL~r  176 (416)
T 2a5h_A          113 YPDR-VLLLITDMCSM-----------YCRHCTRRRF--AGQSDDSMPMERIDKAIDYIRN--TPQVRDVLLSGGDALLV  176 (416)
T ss_dssp             SSSE-EEEEEESCCSS-----------CCTTCTTTTT--TTSSSSBCCHHHHHHHHHHHHT--CTTCCEEEEEESCTTSS
T ss_pred             CCCE-EEEEECCCCCC-----------CCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCC
T ss_conf             5875-89984575477-----------2879898775--6864343468999999999984--89826999978973437


Q ss_pred             C---CCHHHHHHHHC-CC-EEEEECCCCC
Q ss_conf             3---51789999868-98-7999727888
Q gi|254780202|r   99 V---DVPLIQALNKR-GF-EIAVETNGTI  122 (211)
Q Consensus        99 ~---l~~L~~~l~~~-g~-~v~IETnGt~  122 (211)
                      +   +..++..+++. +. .+.|-|||..
T Consensus       177 ~d~~L~~li~~l~~i~~i~~iri~T~~~~  205 (416)
T 2a5h_A          177 SDETLEYIIAKLREIPHVEIVRIGSRTPV  205 (416)
T ss_dssp             CHHHHHHHHHHHHTSTTCCEEEEECSHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             88999999999984799864788806754


No 7  
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=96.81  E-value=0.008  Score=38.47  Aligned_cols=91  Identities=15%  Similarity=0.253  Sum_probs=57.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC---CCHHHHH
Q ss_conf             8988875553333236888877575232588866078999999999875216678738998077200003---5178999
Q gi|254780202|r   30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQA  106 (211)
Q Consensus        30 ~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~---l~~L~~~  106 (211)
                      -||+.           +|.||.... .........++.+++.+.++.+..   .+.+.|+++|||+....   +..+++.
T Consensus        61 n~C~~-----------~C~fC~~~~-~~~~~~~~~ls~eeI~~~~~~~~~---~G~~~i~l~~g~~~~~~~~~~~~~i~~  125 (348)
T 3iix_A           61 NVCRK-----------NCLYCGLRR-DNKNLKRYRMTPEEIVERARLAVQ---FGAKTIVLQSGEDPYXMPDVISDIVKE  125 (348)
T ss_dssp             CCCSC-----------CCTTCTTCT-TCCSSCCCBCCHHHHHHHHHHHHH---TTCSEEEEEESCCGGGTTHHHHHHHHH
T ss_pred             CCCCC-----------CCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             88899-----------891499883-699976615899999999999998---199289982588876648999999874


Q ss_pred             HHHCCCEEEEECCCCCCC-------CCCCEEEEECCC
Q ss_conf             986898799972788866-------788507984167
Q gi|254780202|r  107 LNKRGFEIAVETNGTIEP-------PQGIDWICVSPK  136 (211)
Q Consensus       107 l~~~g~~v~IETnGt~~~-------~~~~d~it~SPK  136 (211)
                      +++.+..+.+. .|....       ...+|.+.++.-
T Consensus       126 i~~~~~~i~~~-~g~~~~e~l~~L~~aG~~~~~~~~e  161 (348)
T 3iix_A          126 IKKMGVAVTLS-LGEWPREYYEKWKEAGADRYLLRHE  161 (348)
T ss_dssp             HHTTSCEEEEE-CCCCCHHHHHHHHHHTCCEEECCCB
T ss_pred             CCCCCEEEEEC-CCCCHHHHHHHHHHHCCCEEEECHH
T ss_conf             03332123202-4543089999999828967985634


No 8  
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=95.91  E-value=0.049  Score=33.10  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf             731599976-8988875553333236888877575232588866078999999999875216678738998077200003
Q gi|254780202|r   21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV   99 (211)
Q Consensus        21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~   99 (211)
                      ++|..||.. -|||-           +|.||.+++.+.   .....+++++++.|+.+...   +.+.++++|..-..+.
T Consensus         2 ~~~~A~i~isrGC~~-----------~CsFC~ip~~rG---~~rsr~~e~Ii~Ei~~l~~~---G~kei~l~~~d~~~~~   64 (304)
T 2qgq_A            2 ERPYAYVKISDGCDR-----------GCTFCSIPSFKG---SLRSRSIEDITREVEDLLKE---GKKEIILVAQDTTSYG   64 (304)
T ss_dssp             CCSEEEEESBCCC------------------------C---CCCBCCHHHHHHHHHHHHHT---TCCEEEEECTTGGGTT
T ss_pred             CCCEEEEEECCCCCC-----------CCEECEEEEEEC---CEEEECHHHHHHHHHHHHHC---CCEEEEEEEECCCCCC
T ss_conf             986199897769899-----------877555620149---83771999999999999986---9909999856466555


Q ss_pred             --------CCHHHHHHHHCCCEEEEECCCC
Q ss_conf             --------5178999986898799972788
Q gi|254780202|r  100 --------DVPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus       100 --------l~~L~~~l~~~g~~v~IETnGt  121 (211)
                              +..|+..+.+......+..+..
T Consensus        65 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~   94 (304)
T 2qgq_A           65 IDLYRKQALPDLLRRLNSLNGEFWIRVMYL   94 (304)
T ss_dssp             HHHHSSCCHHHHHHHHHTSSSSCEEEECCC
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             424451148999998723688358994035


No 9  
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=92.24  E-value=0.67  Score=25.41  Aligned_cols=82  Identities=10%  Similarity=0.181  Sum_probs=49.5

Q ss_pred             CEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-
Q ss_conf             1599-97689888755533332368888775752325--8886607899999999987521667873899807720000-
Q gi|254780202|r   23 VAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-   98 (211)
Q Consensus        23 p~vF-iRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~--~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-   98 (211)
                      .++| ++..||+-           .|.||.-. ....  ......++.+++.+.+.+....   +...+++.||+.-.. 
T Consensus        66 ~~iin~~Tn~C~~-----------~C~FCafs-~~~~~~~~~~~l~s~eeI~e~a~~~~~~---G~~~i~l~~g~~~~~~  130 (369)
T 1r30_A           66 STLLSIKTGACPE-----------DCKYCPQS-SRYKTGLEAERLMEVEQVLESARKAKAA---GSTRFCMGAAWKNPHE  130 (369)
T ss_dssp             EEEEEEECSCBSS-----------CCSSCSCB-TTSCTTCCCCCCCCHHHHHHHHHHHHHT---TCSEEEEEECCSSCCT
T ss_pred             EEEEEECCCCCCC-----------CCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEEEECCCCCCC
T ss_conf             8687755899998-----------89229973-4189998754668879999999989875---9979999957888870


Q ss_pred             -C---CCHHHHHHHHCCCEEEEECC
Q ss_conf             -3---51789999868987999727
Q gi|254780202|r   99 -V---DVPLIQALNKRGFEIAVETN  119 (211)
Q Consensus        99 -~---l~~L~~~l~~~g~~v~IETn  119 (211)
                       .   ...+++.+++.+..+.+...
T Consensus       131 ~~~~~~~~~i~~i~~~~~~i~~~~~  155 (369)
T 1r30_A          131 RDMPYLEQMVQGVKAMGLEACMTLG  155 (369)
T ss_dssp             TTHHHHHHHHHHHHHTTSEEEEECS
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             2799999999985204754765126


No 10 
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=83.86  E-value=1.4  Score=23.17  Aligned_cols=85  Identities=18%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCC-
Q ss_conf             5999768988875553333236888877575232588866078--9999999998752-16678738998077200003-
Q gi|254780202|r   24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--VDQLADLIEEQWI-TGEKEGRYCVLTGGEPLLQV-   99 (211)
Q Consensus        24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~--~~~i~~~i~~~~~-~~~~~~~~VviTGGEPllq~-   99 (211)
                      ++.|-.-=|+=           +|.||+-.-.  .........  ++.+...++.... ........+-+-||-|.+-+ 
T Consensus        54 sLYiHIPFC~~-----------~C~yC~~~~~--~~~~~~~~~~Yl~~L~~Ei~~~a~~~~~~~v~~i~~GGGTpt~L~~  120 (457)
T 1olt_A           54 SLYVHIPFCHK-----------LCYFCGCNKI--VTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK  120 (457)
T ss_dssp             EEEEEECEESS-----------CCTTCCSSCE--ECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH
T ss_pred             EEEEECCCCCC-----------CCCCCCCCEE--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH
T ss_conf             99997089898-----------8999998245--5888661999999999999996556389974599982875044899


Q ss_pred             --CCHHHHHHHHC-----CCEEEEECCCC
Q ss_conf             --51789999868-----98799972788
Q gi|254780202|r  100 --DVPLIQALNKR-----GFEIAVETNGT  121 (211)
Q Consensus       100 --l~~L~~~l~~~-----g~~v~IETnGt  121 (211)
                        +..|++.+++.     ...+.+|++-.
T Consensus       121 ~~l~~l~~~l~~~f~~~~~~e~tiE~~P~  149 (457)
T 1olt_A          121 AQISRLMKLLRENFQFNADAEISIEVDPR  149 (457)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             99999999999864778770799982599


No 11 
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=79.14  E-value=0.85  Score=24.70  Aligned_cols=38  Identities=13%  Similarity=0.247  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             105584013731599976898887555333323688887757523258
Q gi|254780202|r   12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG   59 (211)
Q Consensus        12 SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~   59 (211)
                      +=.|.|.-.|-|-||+.+..=+          ...|+||++.|.....
T Consensus        26 ~CdGg~~~lgHP~Vyl~~~~~~----------~v~CpYC~~~fv~~~~   63 (87)
T 2jz8_A           26 MCVGATQPFDHPHIFIDMGSTD----------EKICPYCSTLYRYDPS   63 (87)
T ss_dssp             ECCCSSCSSSSSSCEEECTTCC----------EECCTTTCCEEECCTT
T ss_pred             EECCCCCCCCCCEEEEECCCCC----------EEECCCCCCEEEECCC
T ss_conf             9749999999998978869999----------7988899988883777


No 12 
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=71.96  E-value=1.7  Score=22.67  Aligned_cols=37  Identities=19%  Similarity=0.467  Sum_probs=27.0

Q ss_pred             ECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5105584013731599976898887555333323688887757523
Q gi|254780202|r   11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG   56 (211)
Q Consensus        11 ~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~   56 (211)
                      .+=.|.|.-.|-|-||+.+..=+=         ..-|.||+..|..
T Consensus        29 VaCdGg~g~lGHP~Vyl~l~~~~~---------~v~C~YC~~~fv~   65 (80)
T 2jvm_A           29 VACDGGEGALGHPRVWLSIPHETG---------FVECGYCDRRYIH   65 (80)
T ss_dssp             EEECCCSTTCCCCCEEEECCTTTC---------EEECSSSSCEEEE
T ss_pred             EEEECCCCCCCCCEEEEECCCCCC---------EEECCCCCCEEEC
T ss_conf             997398998999889387579998---------6988899886670


No 13 
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=56.31  E-value=3  Score=20.97  Aligned_cols=36  Identities=22%  Similarity=0.528  Sum_probs=25.1

Q ss_pred             CCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10558401373159997689-88875553333236888877575232
Q gi|254780202|r   12 TLQGEGGHAGRVAVFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGI   57 (211)
Q Consensus        12 SiQGEG~~~G~p~vFiRl~G-CnL~c~~~~~~~~~~C~~CDT~y~~~   57 (211)
                      +=.|.+.-.|-|-||+.+.. =+-          .-|+||++.|...
T Consensus        17 ~CdGg~g~lgHP~Vyl~l~~~~~~----------v~CpYC~~~fv~k   53 (67)
T 2jrr_A           17 ACDGGEGALGHPRVWLQIPEDTGW----------VECPYCDCKYVLK   53 (67)
T ss_dssp             EEEESSTTSEEEEEEEECCTTTSE----------EEETTTTEEEEET
T ss_pred             EECCCCCCCCCCEEEEECCCCCCE----------EECCCCCCEEEEC
T ss_conf             968999989999898985699986----------9898898798987


No 14 
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=55.18  E-value=11  Score=17.29  Aligned_cols=38  Identities=13%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             3899807720000-3517899998689879997278886
Q gi|254780202|r   86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ..+.++|++=|.. ++.+|++.|++.|.++..|.++..|
T Consensus       110 ~~~~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~lP  148 (445)
T 2pqc_A          110 FDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLP  148 (445)
T ss_dssp             SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEE
T ss_pred             CEEEEECCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             439975863416413899999998547457605798467


No 15 
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=55.06  E-value=4.8  Score=19.60  Aligned_cols=44  Identities=25%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCCCCCC-----C--CHHHHHHHHCCC-------EEEEECCCCCCCCCC
Q ss_conf             8738998077200003-----5--178999986898-------799972788866788
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-----D--VPLIQALNKRGF-------EIAVETNGTIEPPQG  127 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-----l--~~L~~~l~~~g~-------~v~IETnGt~~~~~~  127 (211)
                      +.+.|+|-.|+.+...     +  ..|...|+..|+       .+-+||||.+.+...
T Consensus        14 g~p~vli~~G~i~~~~l~k~~it~~dl~~~LR~~gi~~~~~V~~ailE~~G~iSvi~k   71 (153)
T 3c6f_A           14 GEPNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPK   71 (153)
T ss_dssp             --CEEEEETTEECHHHHHHTTCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCEEEEEC
T ss_pred             CCCEEEEECCEECHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHEEEEECCCCEEEEEC
T ss_conf             9948999999996999978499999999999974999988901889918998999983


No 16 
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A*
Probab=53.66  E-value=8.3  Score=17.99  Aligned_cols=37  Identities=30%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             3899807720000-3517899998689879997278886
Q gi|254780202|r   86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ..+++||++.|.+ ++.+|++.|.+.|.++..+ +|..+
T Consensus       107 ~~~~l~Gd~sl~~RPm~~li~~L~~lGa~i~~~-~g~~~  144 (419)
T 1ejd_A          107 GQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLE-EGYVK  144 (419)
T ss_dssp             EEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEE-TTEEE
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEC-CCCEE
T ss_conf             179843885468897478999998678779960-79255


No 17 
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=47.89  E-value=14  Score=16.54  Aligned_cols=51  Identities=10%  Similarity=0.236  Sum_probs=34.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEEC
Q ss_conf             78999999999875216678738998077200003-5178999986898799972
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVET  118 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IET  118 (211)
                      ...++..+.+.+...   .+...+.+++|.|+++. ...++..+.+.|+.+.+--
T Consensus        77 ~~~~e~~~~~~~~~~---~G~~V~~L~~GDP~~y~~~~~l~~~~~~~~i~vevVP  128 (285)
T 1cbf_A           77 MHLEEMVGTMLDRMR---EGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVP  128 (285)
T ss_dssp             CCHHHHHHHHHHHHT---TTCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECC
T ss_conf             899999999999997---8997999938886631658999999997797599838


No 18 
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=46.26  E-value=14  Score=16.37  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=28.1

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC
Q ss_conf             8738998077200003-51789999868987999727
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN  119 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn  119 (211)
                      ..+.+.+++|.|+++. ...+++.+++.|+.+.+--+
T Consensus        77 ~~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~v~vvPG  113 (265)
T 2z6r_A           77 ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHA  113 (265)
T ss_dssp             TSCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEECC
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             9988999579988888099999999986996798047


No 19 
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=41.25  E-value=14  Score=16.56  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             CHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             1789999868987999727888667
Q gi|254780202|r  101 VPLIQALNKRGFEIAVETNGTIEPP  125 (211)
Q Consensus       101 ~~L~~~l~~~g~~v~IETnGt~~~~  125 (211)
                      ..|-+.-++.|+.+.+||.|+.-+.
T Consensus        26 eaLe~aA~~~G~~ikVEtqGa~G~~   50 (111)
T 2kyr_A           26 QALEEAAVEAGYEVKIETQGADGIQ   50 (111)
T ss_dssp             HHHHHHHHHTSSEEEEEEEETTEEE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             9999999987996999965877877


No 20 
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=39.73  E-value=18  Score=15.71  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=27.7

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC
Q ss_conf             8738998077200003-51789999868987999727
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN  119 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn  119 (211)
                      ..+.+.+++|.|+++. ...|+..+++.|+.+.+=-+
T Consensus        83 ~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPG  119 (294)
T 1wde_A           83 DAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPG  119 (294)
T ss_dssp             CCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEECC
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             7987999679998767189999999988997899788


No 21 
>3kgf_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathwa aromatic biosynthesis; HET: PHE TRP; 2.00A {Mycobacterium tuberculosis} PDB: 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 2w19_A 2w1a_A*
Probab=39.56  E-value=18  Score=15.69  Aligned_cols=54  Identities=13%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf             88660789999999998752166787389980--77200003517899998689879
Q gi|254780202|r   60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFEI  114 (211)
Q Consensus        60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~v  114 (211)
                      +-|..++.+++++.++.+.+... +.+.+.||  |-.=....+-+|+++.++.|..|
T Consensus       308 KvGP~~~p~el~~L~~~LnP~ne-pGRltLI~RmGa~ki~~~LP~Li~aV~~~G~~V  363 (464)
T 3kgf_A          308 KLGPNMTPELAVEYVERLDPHNK-PGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQV  363 (464)
T ss_dssp             EECTTCCHHHHHHHHHHHCTTCC-TTSEEEEECCCTTTHHHHHHHHHHHHHTTSCCC
T ss_pred             EECCCCCHHHHHHHHHHHCCCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf             24899999999999998498887-871899860370789988799999998779955


No 22 
>2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca component; PTS system, fructose specific IIB subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=38.75  E-value=12  Score=16.90  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             789999868987999727888667
Q gi|254780202|r  102 PLIQALNKRGFEIAVETNGTIEPP  125 (211)
Q Consensus       102 ~L~~~l~~~g~~v~IETnGt~~~~  125 (211)
                      .|-+.-++.|+.+.+||+|+.-+.
T Consensus        24 aLe~aA~~~g~~ikVEtqGa~Gie   47 (106)
T 2r48_A           24 NLQKAADRLGVSIKVETQGGIGVE   47 (106)
T ss_dssp             HHHHHHHHHTCEEEEEEEETTEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             999999987996999955877877


No 23 
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=37.55  E-value=18  Score=15.68  Aligned_cols=26  Identities=19%  Similarity=0.123  Sum_probs=20.0

Q ss_pred             CCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             03517899998689879997278886
Q gi|254780202|r   98 QVDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        98 q~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ..+.++++.|++.|+++.|=||+...
T Consensus        21 ~~~~~~l~~lk~~g~~~~i~Tn~~~~   46 (137)
T 2pr7_A           21 RRWRNLLAAAKKNGVGTVILSNDPGG   46 (137)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSCCG
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf             88999999999879959998899989


No 24 
>2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc component; fructose specific IIB subunit, PFAM02379, structural genomics; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=35.81  E-value=12  Score=16.86  Aligned_cols=25  Identities=36%  Similarity=0.384  Sum_probs=19.6

Q ss_pred             CHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             1789999868987999727888667
Q gi|254780202|r  101 VPLIQALNKRGFEIAVETNGTIEPP  125 (211)
Q Consensus       101 ~~L~~~l~~~g~~v~IETnGt~~~~  125 (211)
                      ..|-+.-+++|+.+.+||.|+.-+.
T Consensus        23 eaLekaA~~~G~~ikVEtqG~~g~~   47 (106)
T 2r4q_A           23 DALKEKAKELGVEIKVETNGSSGIK   47 (106)
T ss_dssp             HHHHHHHHHHTCCEEEEEEETTEEE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             9999999987995999945877877


No 25 
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=35.71  E-value=21  Score=15.30  Aligned_cols=49  Identities=18%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEE
Q ss_conf             89999999998752166787389980772000035-17899998689879997
Q gi|254780202|r   66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE  117 (211)
Q Consensus        66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IE  117 (211)
                      ..+++.+.+.+...   .+...+.+|+|.|+++.. ..++..+.+.|+.+.+-
T Consensus       278 ~~~~~~~~l~~~~~---~G~~Va~l~~GDP~~ys~~~~~~~~~~~~~i~veVV  327 (457)
T 1pjq_A          278 PQEEINQILLREAQ---KGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVV  327 (457)
T ss_dssp             TTHHHHHHHHHHHH---TTCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEE
T ss_pred             HHHHHHHHHHHHHH---CCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEC
T ss_conf             07899999999997---498599990688644166999999876378369974


No 26 
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=35.55  E-value=9.8  Score=17.49  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=19.1

Q ss_pred             CCHHHHHHHHCCCEEEEEC-CCCCCC
Q ss_conf             5178999986898799972-788866
Q gi|254780202|r  100 DVPLIQALNKRGFEIAVET-NGTIEP  124 (211)
Q Consensus       100 l~~L~~~l~~~g~~v~IET-nGt~~~  124 (211)
                      ...+++.+......+|+|| ||++.-
T Consensus        12 Vq~~L~~~~~~~VYiHlETTnGaYa~   37 (119)
T 1njh_A           12 VQASLERYADRPVYIHLETTTGSYSA   37 (119)
T ss_dssp             HHHHHHHTTTSCEEEEEEEEECC---
T ss_pred             HHHHHHHHCCCCEEEEEEECCHHHHH
T ss_conf             99999984599549999843626665


No 27 
>3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas shigelloides}
Probab=31.98  E-value=21  Score=15.28  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=11.1

Q ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf             738998077200003517899998689879
Q gi|254780202|r   85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEI  114 (211)
Q Consensus        85 ~~~VviTGGEPllq~l~~L~~~l~~~g~~v  114 (211)
                      .+.|.||||-=.+=  ..|++.|.+.|++|
T Consensus        38 ~K~ILVTGgtGfIG--s~lv~~L~~~g~~V   65 (364)
T 3lu1_A           38 PKTWLITGVAGFIG--SNLLEKLLKLNQVV   65 (364)
T ss_dssp             CCEEEEETTTSHHH--HHHHHHHHTTTCEE
T ss_pred             CCEEEEECCCCHHH--HHHHHHHHHCCCEE
T ss_conf             99899968875899--99999999788989


No 28 
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=30.13  E-value=25  Score=14.70  Aligned_cols=37  Identities=11%  Similarity=0.328  Sum_probs=28.7

Q ss_pred             CCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCC
Q ss_conf             738998077200003-5178999986898799972788
Q gi|254780202|r   85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus        85 ~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt  121 (211)
                      .+.+.++.|.|+++. ...++..+++.|+.+.+--.=|
T Consensus        88 ~~vv~l~~GDP~i~~~~~~l~~~~~~~g~~veviPGiS  125 (268)
T 1vhv_A           88 KSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGAS  125 (268)
T ss_dssp             SEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             98689966998666637999999997799379936846


No 29 
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=29.95  E-value=20  Score=15.33  Aligned_cols=10  Identities=30%  Similarity=0.308  Sum_probs=8.8

Q ss_pred             CEEEEECCCC
Q ss_conf             1599976898
Q gi|254780202|r   23 VAVFCRFSGC   32 (211)
Q Consensus        23 p~vFiRl~GC   32 (211)
                      +.+++||.|+
T Consensus        36 ~~V~v~l~Ga   45 (74)
T 1th5_A           36 PIVKVRLTGP   45 (74)
T ss_dssp             TEEEECCCSS
T ss_pred             CEEEEEECCC
T ss_conf             9999997378


No 30 
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=29.24  E-value=26  Score=14.59  Aligned_cols=34  Identities=15%  Similarity=0.294  Sum_probs=26.0

Q ss_pred             CCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEE
Q ss_conf             87389980772000035-17899998689879997
Q gi|254780202|r   84 EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE  117 (211)
Q Consensus        84 ~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IE  117 (211)
                      ....+.+++|.|+++.. ..+++.+.+.++.+.+-
T Consensus        96 g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~vevI  130 (259)
T 2e0n_A           96 GRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT  130 (259)
T ss_dssp             TCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf             99489990687544463999977742677847996


No 31 
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=28.87  E-value=27  Score=14.55  Aligned_cols=31  Identities=16%  Similarity=0.334  Sum_probs=24.6

Q ss_pred             CEEEEE-CCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             389980-77200003-51789999868987999
Q gi|254780202|r   86 RYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        86 ~~VviT-GGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ..+.+| +|-|.+.+ -..|++.+++.|++|..
T Consensus        81 ~v~lvSdaG~P~IaDPG~~lv~~a~~~gi~V~~  113 (117)
T 3hh1_A           81 DVALVTDAGTPAISDPGYTMASAAHAAGLPVVP  113 (117)
T ss_dssp             CEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCCCEEECCHHHHHHHHHHCCCCEEE
T ss_conf             699995589963767699999999986995895


No 32 
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459}
Probab=28.66  E-value=27  Score=14.53  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             51789999868987999727888
Q gi|254780202|r  100 DVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus       100 l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      ..++++.|++.|+++.|=||++.
T Consensus        39 ~~e~L~~Lk~~g~kl~ivTN~~~   61 (189)
T 3ib6_A           39 AKETLEKVKQLGFKQAILSNTAT   61 (189)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSS
T ss_pred             HHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99999999978994999969986


No 33 
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=27.85  E-value=28  Score=14.44  Aligned_cols=29  Identities=17%  Similarity=0.157  Sum_probs=24.1

Q ss_pred             EEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             998077200003-51789999868987999
Q gi|254780202|r   88 CVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        88 VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ++..||-|++.. -.++++.+.+.|++|.+
T Consensus        93 l~sdaG~P~I~dpg~~lv~~~~~~~i~v~v  122 (296)
T 3kwp_A           93 QVSDAGMPSISDPGHELVNACIDAHIPVVP  122 (296)
T ss_dssp             EECSSBCTTSSHHHHHHHHHHHHTTCCEEE
T ss_pred             EEECCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             997699851022799999986277358998


No 34 
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=25.66  E-value=30  Score=14.18  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=27.2

Q ss_pred             CCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC
Q ss_conf             738998077200003-51789999868987999727
Q gi|254780202|r   85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN  119 (211)
Q Consensus        85 ~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn  119 (211)
                      .+.+.+.+|.|+++. ...++..+.+.|+.+.+--.
T Consensus        96 g~vv~l~~GDP~i~~~~~~~~~~~~~~gi~~eviPG  131 (292)
T 3i4t_A           96 KNVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHN  131 (292)
T ss_dssp             SEEEEEESBCHHHHCTTHHHHHHHHHHTCCEEEECC
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEECCC
T ss_conf             998999679998888599999999976992898388


No 35 
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=24.98  E-value=31  Score=14.09  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=27.3

Q ss_pred             CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCC
Q ss_conf             3899807720000-3517899998689879997278
Q gi|254780202|r   86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG  120 (211)
Q Consensus        86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnG  120 (211)
                      ..|.++||+=|.. ++.+|++.|++.|..+.-+++.
T Consensus       107 ~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~  142 (427)
T 1rf6_A          107 FEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTER  142 (427)
T ss_dssp             SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTT
T ss_pred             CEECCCCCHHHHCCCCCHHHHHHHHCCCEEEECCCC
T ss_conf             333466886662653201234577428479831355


No 36 
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A
Probab=24.53  E-value=32  Score=14.04  Aligned_cols=40  Identities=23%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             CCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEEC-CCCCC
Q ss_conf             873899807720000-35178999986898799972-78886
Q gi|254780202|r   84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVET-NGTIE  123 (211)
Q Consensus        84 ~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IET-nGt~~  123 (211)
                      ....+.++||+-|-. ++.++++.|++.|.++..+. +|..|
T Consensus       133 ~~~~v~~~G~~sL~~Rp~~~l~~~L~~lGa~i~~~~~~~~~P  174 (450)
T 3nvs_A          133 GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPP  174 (450)
T ss_dssp             SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             563497058555532048789999997698999811577341


No 37 
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=23.98  E-value=25  Score=14.71  Aligned_cols=14  Identities=14%  Similarity=0.707  Sum_probs=11.0

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             36888877575232
Q gi|254780202|r   44 SAQCRFCDTDFVGI   57 (211)
Q Consensus        44 ~~~C~~CDT~y~~~   57 (211)
                      ...|.+|+.+|+..
T Consensus        13 ~~eC~~C~vkYs~~   26 (55)
T 2yrk_A           13 KPECTLCGVKYSAR   26 (55)
T ss_dssp             CSCCTTTTCCCCSS
T ss_pred             CCCCCCCCEEECCC
T ss_conf             45377446130564


No 38 
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=23.63  E-value=33  Score=13.92  Aligned_cols=53  Identities=19%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-C-CHHHHHHHHCCCEEEEE
Q ss_conf             78999999999875216678738998077200003-5-17899998689879997
Q gi|254780202|r   65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D-VPLIQALNKRGFEIAVE  117 (211)
Q Consensus        65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l-~~L~~~l~~~g~~v~IE  117 (211)
                      ||++.+.+.|.+.........+.|.||||-=.=-. + ..|.+.|...++.+.+-
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~i   56 (208)
T 3c8u_A            2 MTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV   56 (208)
T ss_dssp             CCHHHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8889999999997503499968999889898999999999999973428981575


No 39 
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural genomics, protein structure initiative; 2.10A {Bacillus halodurans}
Probab=23.39  E-value=33  Score=13.89  Aligned_cols=35  Identities=20%  Similarity=0.194  Sum_probs=24.3

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHCCCEEEE-ECCCCC
Q ss_conf             99807720000351789999868987999-727888
Q gi|254780202|r   88 CVLTGGEPLLQVDVPLIQALNKRGFEIAV-ETNGTI  122 (211)
Q Consensus        88 VviTGGEPllq~l~~L~~~l~~~g~~v~I-ETnGt~  122 (211)
                      +-||||--.......+++.|.+.|+.|++ =|..+.
T Consensus        12 lgITGs~a~~~~~l~li~~L~~~g~~V~vI~S~~A~   47 (201)
T 3lqk_A           12 FGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTVQ   47 (201)
T ss_dssp             EECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCSC
T ss_pred             EEECCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
T ss_conf             997585999999999999999889969999774288


No 40 
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=23.29  E-value=12  Score=16.85  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCCCC--CCCCCCCCH---HHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             8888775752325--888660789---999999998752166787389980772000
Q gi|254780202|r   46 QCRFCDTDFVGIQ--GTKGGRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLL   97 (211)
Q Consensus        46 ~C~~CDT~y~~~~--~~~~~~~~~---~~i~~~i~~~~~~~~~~~~~VviTGGEPll   97 (211)
                      .|+||+-.-.+.+  +-.....++   .+..+.+...   +....+. ++-|||..-
T Consensus        10 ~Cp~C~~~k~~L~~~~i~y~~~~i~~~~~~~~~~~~~---g~~tvP~-v~i~g~~i~   62 (75)
T 1r7h_A           10 ACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL---GYVQAPV-VEVDGEHWS   62 (75)
T ss_dssp             TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT---TCBCCCE-EEETTEEEE
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC---CCCCCCE-EEECCEEEE
T ss_conf             9976999999980249944999746898999999971---7996498-999999994


No 41 
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=22.69  E-value=34  Score=13.80  Aligned_cols=47  Identities=13%  Similarity=0.258  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf             99999999875216678738998077200003517899998689879997278
Q gi|254780202|r   68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG  120 (211)
Q Consensus        68 ~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnG  120 (211)
                      ..+++++++...      +...+.=|.-+..+-.++++++.+.|+.+...|--
T Consensus       123 ~~iL~~L~~~~v------~ATFFv~G~~i~~~~~~~~k~~~~~GheIgnHt~~  169 (311)
T 2w3z_A          123 PKILDVLAQQHV------HATFFLVGCNITDKVKPILQRQITEGHALGIHSFS  169 (311)
T ss_dssp             HHHHHHHHHTTC------CCEEEECGGGCCGGGHHHHHHHHHTTCEEEECCSS
T ss_pred             HHHHHHHHHCCC------CEEEEECCCCHHHCHHHHHHHHHHCCCEEEEECCC
T ss_conf             999999998599------78998257434345699999999749889830351


No 42 
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/beta/alpha) sandwich; NMR {Escherichia coli CFT073} SCOP: d.350.1.1
Probab=22.66  E-value=28  Score=14.42  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=25.0

Q ss_pred             EEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             8998077200003-51789999868987999
Q gi|254780202|r   87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        87 ~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      .+.+|+..+|.+. ....++.|.++||..++
T Consensus        56 ~l~Lt~~rkLArad~~~Vl~~l~e~GfyLQm   86 (110)
T 2h7a_A           56 ILPLDGRKKLVNADIEKVKQALTEQGYYLQL   86 (110)
T ss_dssp             EECSSSCCCCSSSCHHHHHHHHHHTSEEEEC
T ss_pred             EEECCCCCHHHHCCHHHHHHHHHHCCEEEEC
T ss_conf             9724887602109899999999868978978


No 43 
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} SCOP: e.59.1.1
Probab=22.08  E-value=35  Score=13.72  Aligned_cols=13  Identities=15%  Similarity=0.261  Sum_probs=6.7

Q ss_pred             HHHHHHHHCCCCE
Q ss_conf             9999999678977
Q gi|254780202|r  187 LAISYCFQNPKWR  199 (211)
Q Consensus       187 ~~i~~~~~~~~~R  199 (211)
                      +.+|++.+..+++
T Consensus       284 l~LDlla~e~Gy~  296 (309)
T 2fiy_A          284 LALDMRLAEDGYL  296 (309)
T ss_dssp             HHHHHHHHHTTCE
T ss_pred             HHHHHHHHHCCCC
T ss_conf             6888999867998


No 44 
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.59  E-value=18  Score=15.77  Aligned_cols=10  Identities=40%  Similarity=1.155  Sum_probs=7.5

Q ss_pred             CCCCCCCCCC
Q ss_conf             6888877575
Q gi|254780202|r   45 AQCRFCDTDF   54 (211)
Q Consensus        45 ~~C~~CDT~y   54 (211)
                      +.|+|||.-|
T Consensus        10 ~KCPyCd~~F   19 (37)
T 2elp_A           10 MKCPYCDFYF   19 (37)
T ss_dssp             EECSSSSCEE
T ss_pred             CCCCCHHHHH
T ss_conf             1487016888


Done!