Query gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 211 No_of_seqs 111 out of 1224 Neff 7.0 Searched_HMMs 23785 Date Mon May 23 14:07:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780202.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3c8f_A Pyruvate formate-lyase 99.8 3.3E-18 1.4E-22 142.8 12.8 119 5-140 7-135 (245) 2 2yx0_A Radical SAM enzyme; pre 99.0 2.4E-09 1E-13 82.7 11.3 57 84-140 141-207 (342) 3 2z2u_A UPF0026 protein MJ0257; 98.9 5.4E-09 2.3E-13 80.3 9.2 99 29-138 59-186 (311) 4 1tv8_A MOAA, molybdenum cofact 98.9 2E-08 8.2E-13 76.5 10.8 102 21-136 10-128 (340) 5 3can_A Pyruvate-formate lyase- 98.7 7.7E-08 3.2E-12 72.5 8.2 55 87-141 6-68 (182) 6 2a5h_A L-lysine 2,3-aminomutas 98.2 9.1E-06 3.8E-10 58.4 9.3 88 19-122 113-205 (416) 7 3iix_A Biotin synthetase, puta 96.8 0.008 3.3E-07 38.5 8.8 91 30-136 61-161 (348) 8 2qgq_A Protein TM_1862; alpha- 95.9 0.049 2.1E-06 33.1 8.5 84 21-121 2-94 (304) 9 1r30_A Biotin synthase; SAM ra 92.2 0.67 2.8E-05 25.4 9.5 82 23-119 66-155 (369) 10 1olt_A Oxygen-independent copr 83.9 1.4 6E-05 23.2 4.7 85 24-121 54-149 (457) 11 2jz8_A Uncharacterized protein 79.1 0.85 3.6E-05 24.7 2.2 38 12-59 26-63 (87) 12 2jvm_A Uncharacterized protein 72.0 1.7 7.2E-05 22.7 2.2 37 11-56 29-65 (80) 13 2jrr_A Uncharacterized protein 56.3 3 0.00013 21.0 1.0 36 12-57 17-53 (67) 14 2pqc_A 3-phosphoshikimate 1-ca 55.2 11 0.00044 17.3 4.5 38 86-123 110-148 (445) 15 3c6f_A YETF protein; uncharact 55.1 4.8 0.0002 19.6 1.9 44 84-127 14-71 (153) 16 1ejd_A MURA, EPT, UDP-N-acetyl 53.7 8.3 0.00035 18.0 2.9 37 86-123 107-144 (419) 17 1cbf_A Cobalt-precorrin-4 tran 47.9 14 0.00057 16.5 5.6 51 65-118 77-128 (285) 18 2z6r_A Diphthine synthase; met 46.3 14 0.00061 16.4 5.6 36 84-119 77-113 (265) 19 2kyr_A Fructose-like phosphotr 41.3 14 0.00057 16.6 2.4 25 101-125 26-50 (111) 20 1wde_A Probable diphthine synt 39.7 18 0.00076 15.7 4.7 36 84-119 83-119 (294) 21 3kgf_A Probable 3-deoxy-D-arab 39.6 18 0.00076 15.7 4.3 54 60-114 308-363 (464) 22 2r48_A Phosphotransferase syst 38.7 12 0.00051 16.9 1.8 24 102-125 24-47 (106) 23 2pr7_A Haloacid dehalogenase/e 37.6 18 0.00077 15.7 2.6 26 98-123 21-46 (137) 24 2r4q_A Phosphotransferase syst 35.8 12 0.00051 16.9 1.5 25 101-125 23-47 (106) 25 1pjq_A CYSG, siroheme synthase 35.7 21 0.00087 15.3 3.7 49 66-117 278-327 (457) 26 1njh_A Protein YOJF; structura 35.5 9.8 0.00041 17.5 1.0 25 100-124 12-37 (119) 27 3lu1_A WBGU; rossman fold, epi 32.0 21 0.00088 15.3 2.2 28 85-114 38-65 (364) 28 1vhv_A Diphthine synthase; str 30.1 25 0.0011 14.7 4.3 37 85-121 88-125 (268) 29 1th5_A NIFU1; iron-sulfur clus 29.9 20 0.00086 15.3 1.8 10 23-32 36-45 (74) 30 2e0n_A Precorrin-2 C20-methylt 29.2 26 0.0011 14.6 4.9 34 84-117 96-130 (259) 31 3hh1_A Tetrapyrrole methylase 28.9 27 0.0011 14.6 4.8 31 86-116 81-113 (117) 32 3ib6_A Uncharacterized protein 28.7 27 0.0011 14.5 3.0 23 100-122 39-61 (189) 33 3kwp_A Predicted methyltransfe 27.8 28 0.0012 14.4 4.3 29 88-116 93-122 (296) 34 3i4t_A Diphthine synthase; nia 25.7 30 0.0013 14.2 2.9 35 85-119 96-131 (292) 35 1rf6_A 5-enolpyruvylshikimate- 25.0 31 0.0013 14.1 4.2 35 86-120 107-142 (427) 36 3nvs_A 3-phosphoshikimate 1-ca 24.5 32 0.0013 14.0 5.8 40 84-123 133-174 (450) 37 2yrk_A Zinc finger homeobox pr 24.0 25 0.0011 14.7 1.4 14 44-57 13-26 (55) 38 3c8u_A Fructokinase; YP_612366 23.6 33 0.0014 13.9 3.7 53 65-117 2-56 (208) 39 3lqk_A Dipicolinate synthase s 23.4 33 0.0014 13.9 4.0 35 88-122 12-47 (201) 40 1r7h_A NRDH-redoxin; thioredox 23.3 12 0.00051 16.9 -0.3 48 46-97 10-62 (75) 41 2w3z_A Putative deacetylase; P 22.7 34 0.0014 13.8 5.2 47 68-120 123-169 (311) 42 2h7a_A Hypothetical protein YC 22.7 28 0.0012 14.4 1.4 30 87-116 56-86 (110) 43 2fiy_A Protein FDHE homolog; F 22.1 35 0.0015 13.7 2.9 13 187-199 284-296 (309) 44 2elp_A Zinc finger protein 406 21.6 18 0.00074 15.8 0.2 10 45-54 10-19 (37) No 1 >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Probab=99.78 E-value=3.3e-18 Score=142.82 Aligned_cols=119 Identities=24% Similarity=0.337 Sum_probs=92.6 Q ss_pred CEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 12447751055840137315999768988875553333236888877575232588866078999999999875216678 Q gi|254780202|r 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 (211) Q Consensus 5 ~i~EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 84 (211) .-.|.|.|++|||.+ -++| |+|||+ +|.||....+ +....+..++.+++.+.+.+........ T Consensus 7 ~~~~~~s~~dg~G~r---~~vf--~~GCN~-----------~C~~C~n~~~-~~~~~~~~~~~~e~~~ei~~~~~~~~~~ 69 (245) T 3c8f_A 7 HSFESCGTVDGPGIR---FITF--FQGCLM-----------RCLYCHNRDT-WDTHGGKEVTVEDLMKEVVTYRHFMNAS 69 (245) T ss_dssp EEEEEEECTTSSSEE---EEEE--ESCCSC-----------CCTTCSCGGG-CCTTCSEEECHHHHHHHHGGGHHHHTST T ss_pred EEEEEECEEECCCCE---EEEE--CCCCCC-----------CCCCCCCHHH-HCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 357995549489638---9998--787478-----------8989997134-1867991889999999999999975257 Q ss_pred CCEEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCCCC--------CCCEEEEECCCCCCC Q ss_conf 738998077200003--51789999868987999727888667--------885079841677741 Q gi|254780202|r 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP--------QGIDWICVSPKAGCD 140 (211) Q Consensus 85 ~~~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~~~--------~~~d~it~SPK~~~~ 140 (211) ...|++|||||++|. +.++++.+++.|+++.++|||+.... ..+|++.+|.|...+ T Consensus 70 ~~~v~~sGGEP~l~~~~l~~l~~~~k~~g~~~~l~TnG~~~~~~~~~~~l~~~~d~v~id~~~~~~ 135 (245) T 3c8f_A 70 GGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMND 135 (245) T ss_dssp TCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSH T ss_pred CCEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCH T ss_conf 875853555653469999999998886438479977886555345666652357579984354678 No 2 >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Probab=99.05 E-value=2.4e-09 Score=82.71 Aligned_cols=57 Identities=30% Similarity=0.305 Sum_probs=43.8 Q ss_pred CCCEEEEEC-CCCCCCC-CCHHHHHHHHCCCEEEEECCCCCCC--------CCCCEEEEECCCCCCC Q ss_conf 873899807-7200003-5178999986898799972788866--------7885079841677741 Q gi|254780202|r 84 EGRYCVLTG-GEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP--------PQGIDWICVSPKAGCD 140 (211) Q Consensus 84 ~~~~VviTG-GEPllq~-l~~L~~~l~~~g~~v~IETnGt~~~--------~~~~d~it~SPK~~~~ 140 (211) ..++|+++| |||++++ +.+|++.+++.|+.+.+-|||+++- ...+|++.+|-+...+ T Consensus 141 ~~~hvais~~GEPll~p~l~eli~~~~~~gi~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~ 207 (342) T 2yx0_A 141 NPTHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDI 207 (342) T ss_dssp SCCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSH T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCH T ss_conf 8767999578775345559999999986396499965886611799999874788679983578998 No 3 >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Probab=98.93 E-value=5.4e-09 Score=80.35 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=60.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCHHHHHHHHHHH----HHC--------------CCCC Q ss_conf 68988875553333236888877------57523258886607899999999987----521--------------6678 Q gi|254780202|r 29 FSGCNLWSGREQDRLSAQCRFCD------TDFVGIQGTKGGRYNVDQLADLIEEQ----WIT--------------GEKE 84 (211) Q Consensus 29 l~GCnL~c~~~~~~~~~~C~~CD------T~y~~~~~~~~~~~~~~~i~~~i~~~----~~~--------------~~~~ 84 (211) +++||+ +|.||= ....+.........+++++++.+.+. ... .... T Consensus 59 ~~~CN~-----------rC~fC~r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~~ea~~ 127 (311) T 2z2u_A 59 VIWCQQ-----------NCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALE 127 (311) T ss_dssp SSCCSC-----------C----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTS T ss_pred CCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC T ss_conf 300208-----------794776988787777731013445489999999999999999765326775401566665237 Q ss_pred CCEEEEE-CCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCCC---CCCCEEEEECCCCC Q ss_conf 7389980-77200003-5178999986898799972788866---78850798416777 Q gi|254780202|r 85 GRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP---PQGIDWICVSPKAG 138 (211) Q Consensus 85 ~~~VviT-GGEPllq~-l~~L~~~l~~~g~~v~IETnGt~~~---~~~~d~it~SPK~~ 138 (211) .+++.++ ||||++++ +.+|++.+++.|+.+.+-|||+++- ....|.+.+|-... T Consensus 128 ~~~iais~~GEP~l~p~l~eli~~~~~~gi~~~l~TNG~~~d~l~~l~~~~l~vSlDa~ 186 (311) T 2z2u_A 128 PKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIEPTQLYISLDAY 186 (311) T ss_dssp CCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHCCCSEEEEECCCS T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCEEEEEECCC T ss_conf 63798626887304789999999998759727754154344789870551588630479 No 4 >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Probab=98.88 E-value=2e-08 Score=76.54 Aligned_cols=102 Identities=26% Similarity=0.275 Sum_probs=68.1 Q ss_pred CCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 731599976---89888755533332368888775752325----88866078999999999875216678738998077 Q gi|254780202|r 21 GRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 (211) Q Consensus 21 G~p~vFiRl---~GCnL~c~~~~~~~~~~C~~CDT~y~~~~----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG 93 (211) |||--.+|+ ..||| +|.||-....... ......++.+++..+++++... +...|.+||| T Consensus 10 ~R~~~~lri~IT~rCNL-----------~C~~C~~~~~~~~~~~~~~~~~~Ls~eei~~ii~~~~~~---gv~~i~ltGG 75 (340) T 1tv8_A 10 GRPIRDLRLSVTDRCNF-----------RCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL---GVKKIRITGG 75 (340) T ss_dssp SCBCCEEEEECCSCCSC-----------CCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHT---TCCEEEEESS T ss_pred CCCCCCEEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEECCC T ss_conf 99038579971552178-----------896889640067777767610348999999999999876---9809996388 Q ss_pred CCCCCC-CCHHHHHHHHCC-CEEEEECCCCCCCC--------CCCEEEEECCC Q ss_conf 200003-517899998689-87999727888667--------88507984167 Q gi|254780202|r 94 EPLLQV-DVPLIQALNKRG-FEIAVETNGTIEPP--------QGIDWICVSPK 136 (211) Q Consensus 94 EPllq~-l~~L~~~l~~~g-~~v~IETnGt~~~~--------~~~d~it~SPK 136 (211) |||+.+ +..++..++..+ ..+.+=|||+.-.. ..++.|.+|-- T Consensus 76 EPllr~d~~~~i~~~~~~~~~~~~~~Tng~ll~~~~~~~L~~~gl~~v~ISld 128 (340) T 1tv8_A 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLD 128 (340) T ss_dssp CGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECC T ss_pred CHHCCHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCC T ss_conf 62007006999987521022102421078653421389999849988850467 No 5 >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Probab=98.67 E-value=7.7e-08 Score=72.50 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=44.5 Q ss_pred EEEEECCCCCCCC--CCHHHHHHHHCCCEEEEECCCCCCC------CCCCEEEEECCCCCCCC Q ss_conf 8998077200003--5178999986898799972788866------78850798416777410 Q gi|254780202|r 87 YCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP------PQGIDWICVSPKAGCDL 141 (211) Q Consensus 87 ~VviTGGEPllq~--l~~L~~~l~~~g~~v~IETnGt~~~------~~~~d~it~SPK~~~~~ 141 (211) -|+|||||||+|+ +.++++.+++.|+.+.|.|||++.. .+..|++.+|.|...+. T Consensus 6 gVt~sGGEP~l~~~~l~ei~~~~k~~g~~~~l~TNG~l~~e~~~~~~~~~d~~~~sl~~~~~e 68 (182) T 3can_A 6 GVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLIDLKSMDST 68 (182) T ss_dssp CEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCHH T ss_pred CEEEEECCHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHEECCCCCCCHH T ss_conf 689983035098879999999998879919998177524899998543223254142336899 No 6 >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Probab=98.21 E-value=9.1e-06 Score=58.44 Aligned_cols=88 Identities=17% Similarity=0.303 Sum_probs=59.9 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC Q ss_conf 13731599976898887555333323688887757523258886607899999999987521667873899807720000 Q gi|254780202|r 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 (211) Q Consensus 19 ~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq 98 (211) |.++ +.|.=...||+ +|.||=-..- .+.....++.+++...++.+.. ....+-|.|||||||+- T Consensus 113 Y~~r-vll~vT~~Cn~-----------~CrYC~R~~~--~~~~~~~l~~~ei~~~i~yi~~--~~~I~~V~lTGGePL~r 176 (416) T 2a5h_A 113 YPDR-VLLLITDMCSM-----------YCRHCTRRRF--AGQSDDSMPMERIDKAIDYIRN--TPQVRDVLLSGGDALLV 176 (416) T ss_dssp SSSE-EEEEEESCCSS-----------CCTTCTTTTT--TTSSSSBCCHHHHHHHHHHHHT--CTTCCEEEEEESCTTSS T ss_pred CCCE-EEEEECCCCCC-----------CCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCC T ss_conf 5875-89984575477-----------2879898775--6864343468999999999984--89826999978973437 Q ss_pred C---CCHHHHHHHHC-CC-EEEEECCCCC Q ss_conf 3---51789999868-98-7999727888 Q gi|254780202|r 99 V---DVPLIQALNKR-GF-EIAVETNGTI 122 (211) Q Consensus 99 ~---l~~L~~~l~~~-g~-~v~IETnGt~ 122 (211) + +..++..+++. +. .+.|-|||.. T Consensus 177 ~d~~L~~li~~l~~i~~i~~iri~T~~~~ 205 (416) T 2a5h_A 177 SDETLEYIIAKLREIPHVEIVRIGSRTPV 205 (416) T ss_dssp CHHHHHHHHHHHHTSTTCCEEEEECSHHH T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 88999999999984799864788806754 No 7 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Probab=96.81 E-value=0.008 Score=38.47 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=57.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC---CCHHHHH Q ss_conf 8988875553333236888877575232588866078999999999875216678738998077200003---5178999 Q gi|254780202|r 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQA 106 (211) Q Consensus 30 ~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~---l~~L~~~ 106 (211) -||+. +|.||.... .........++.+++.+.++.+.. .+.+.|+++|||+.... +..+++. T Consensus 61 n~C~~-----------~C~fC~~~~-~~~~~~~~~ls~eeI~~~~~~~~~---~G~~~i~l~~g~~~~~~~~~~~~~i~~ 125 (348) T 3iix_A 61 NVCRK-----------NCLYCGLRR-DNKNLKRYRMTPEEIVERARLAVQ---FGAKTIVLQSGEDPYXMPDVISDIVKE 125 (348) T ss_dssp CCCSC-----------CCTTCTTCT-TCCSSCCCBCCHHHHHHHHHHHHH---TTCSEEEEEESCCGGGTTHHHHHHHHH T ss_pred CCCCC-----------CCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHH T ss_conf 88899-----------891499883-699976615899999999999998---199289982588876648999999874 Q ss_pred HHHCCCEEEEECCCCCCC-------CCCCEEEEECCC Q ss_conf 986898799972788866-------788507984167 Q gi|254780202|r 107 LNKRGFEIAVETNGTIEP-------PQGIDWICVSPK 136 (211) Q Consensus 107 l~~~g~~v~IETnGt~~~-------~~~~d~it~SPK 136 (211) +++.+..+.+. .|.... ...+|.+.++.- T Consensus 126 i~~~~~~i~~~-~g~~~~e~l~~L~~aG~~~~~~~~e 161 (348) T 3iix_A 126 IKKMGVAVTLS-LGEWPREYYEKWKEAGADRYLLRHE 161 (348) T ss_dssp HHTTSCEEEEE-CCCCCHHHHHHHHHHTCCEEECCCB T ss_pred CCCCCEEEEEC-CCCCHHHHHHHHHHHCCCEEEECHH T ss_conf 03332123202-4543089999999828967985634 No 8 >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Probab=95.91 E-value=0.049 Score=33.10 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=57.1 Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC Q ss_conf 731599976-8988875553333236888877575232588866078999999999875216678738998077200003 Q gi|254780202|r 21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 (211) Q Consensus 21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~ 99 (211) ++|..||.. -|||- +|.||.+++.+. .....+++++++.|+.+... +.+.++++|..-..+. T Consensus 2 ~~~~A~i~isrGC~~-----------~CsFC~ip~~rG---~~rsr~~e~Ii~Ei~~l~~~---G~kei~l~~~d~~~~~ 64 (304) T 2qgq_A 2 ERPYAYVKISDGCDR-----------GCTFCSIPSFKG---SLRSRSIEDITREVEDLLKE---GKKEIILVAQDTTSYG 64 (304) T ss_dssp CCSEEEEESBCCC------------------------C---CCCBCCHHHHHHHHHHHHHT---TCCEEEEECTTGGGTT T ss_pred CCCEEEEEECCCCCC-----------CCEECEEEEEEC---CEEEECHHHHHHHHHHHHHC---CCEEEEEEEECCCCCC T ss_conf 986199897769899-----------877555620149---83771999999999999986---9909999856466555 Q ss_pred --------CCHHHHHHHHCCCEEEEECCCC Q ss_conf --------5178999986898799972788 Q gi|254780202|r 100 --------DVPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 100 --------l~~L~~~l~~~g~~v~IETnGt 121 (211) +..|+..+.+......+..+.. T Consensus 65 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 94 (304) T 2qgq_A 65 IDLYRKQALPDLLRRLNSLNGEFWIRVMYL 94 (304) T ss_dssp HHHHSSCCHHHHHHHHHTSSSSCEEEECCC T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 424451148999998723688358994035 No 9 >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Probab=92.24 E-value=0.67 Score=25.41 Aligned_cols=82 Identities=10% Similarity=0.181 Sum_probs=49.5 Q ss_pred CEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC- Q ss_conf 1599-97689888755533332368888775752325--8886607899999999987521667873899807720000- Q gi|254780202|r 23 VAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ- 98 (211) Q Consensus 23 p~vF-iRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~--~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq- 98 (211) .++| ++..||+- .|.||.-. .... ......++.+++.+.+.+.... +...+++.||+.-.. T Consensus 66 ~~iin~~Tn~C~~-----------~C~FCafs-~~~~~~~~~~~l~s~eeI~e~a~~~~~~---G~~~i~l~~g~~~~~~ 130 (369) T 1r30_A 66 STLLSIKTGACPE-----------DCKYCPQS-SRYKTGLEAERLMEVEQVLESARKAKAA---GSTRFCMGAAWKNPHE 130 (369) T ss_dssp EEEEEEECSCBSS-----------CCSSCSCB-TTSCTTCCCCCCCCHHHHHHHHHHHHHT---TCSEEEEEECCSSCCT T ss_pred EEEEEECCCCCCC-----------CCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEEEECCCCCCC T ss_conf 8687755899998-----------89229973-4189998754668879999999989875---9979999957888870 Q ss_pred -C---CCHHHHHHHHCCCEEEEECC Q ss_conf -3---51789999868987999727 Q gi|254780202|r 99 -V---DVPLIQALNKRGFEIAVETN 119 (211) Q Consensus 99 -~---l~~L~~~l~~~g~~v~IETn 119 (211) . ...+++.+++.+..+.+... T Consensus 131 ~~~~~~~~~i~~i~~~~~~i~~~~~ 155 (369) T 1r30_A 131 RDMPYLEQMVQGVKAMGLEACMTLG 155 (369) T ss_dssp TTHHHHHHHHHHHHHTTSEEEEECS T ss_pred CHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 2799999999985204754765126 No 10 >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Probab=83.86 E-value=1.4 Score=23.17 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=45.8 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCC- Q ss_conf 5999768988875553333236888877575232588866078--9999999998752-16678738998077200003- Q gi|254780202|r 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--VDQLADLIEEQWI-TGEKEGRYCVLTGGEPLLQV- 99 (211) Q Consensus 24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~--~~~i~~~i~~~~~-~~~~~~~~VviTGGEPllq~- 99 (211) ++.|-.-=|+= +|.||+-.-. ......... ++.+...++.... ........+-+-||-|.+-+ T Consensus 54 sLYiHIPFC~~-----------~C~yC~~~~~--~~~~~~~~~~Yl~~L~~Ei~~~a~~~~~~~v~~i~~GGGTpt~L~~ 120 (457) T 1olt_A 54 SLYVHIPFCHK-----------LCYFCGCNKI--VTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK 120 (457) T ss_dssp EEEEEECEESS-----------CCTTCCSSCE--ECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH T ss_pred EEEEECCCCCC-----------CCCCCCCCEE--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH T ss_conf 99997089898-----------8999998245--5888661999999999999996556389974599982875044899 Q ss_pred --CCHHHHHHHHC-----CCEEEEECCCC Q ss_conf --51789999868-----98799972788 Q gi|254780202|r 100 --DVPLIQALNKR-----GFEIAVETNGT 121 (211) Q Consensus 100 --l~~L~~~l~~~-----g~~v~IETnGt 121 (211) +..|++.+++. ...+.+|++-. T Consensus 121 ~~l~~l~~~l~~~f~~~~~~e~tiE~~P~ 149 (457) T 1olt_A 121 AQISRLMKLLRENFQFNADAEISIEVDPR 149 (457) T ss_dssp HHHHHHHHHHHHHSCEEEEEEEEEEECSS T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 99999999999864778770799982599 No 11 >2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} Probab=79.14 E-value=0.85 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=27.7 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 105584013731599976898887555333323688887757523258 Q gi|254780202|r 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 (211) Q Consensus 12 SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~ 59 (211) +=.|.|.-.|-|-||+.+..=+ ...|+||++.|..... T Consensus 26 ~CdGg~~~lgHP~Vyl~~~~~~----------~v~CpYC~~~fv~~~~ 63 (87) T 2jz8_A 26 MCVGATQPFDHPHIFIDMGSTD----------EKICPYCSTLYRYDPS 63 (87) T ss_dssp ECCCSSCSSSSSSCEEECTTCC----------EECCTTTCCEEECCTT T ss_pred EECCCCCCCCCCEEEEECCCCC----------EEECCCCCCEEEECCC T ss_conf 9749999999998978869999----------7988899988883777 No 12 >2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} Probab=71.96 E-value=1.7 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.467 Sum_probs=27.0 Q ss_pred ECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5105584013731599976898887555333323688887757523 Q gi|254780202|r 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 (211) Q Consensus 11 ~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~ 56 (211) .+=.|.|.-.|-|-||+.+..=+= ..-|.||+..|.. T Consensus 29 VaCdGg~g~lGHP~Vyl~l~~~~~---------~v~C~YC~~~fv~ 65 (80) T 2jvm_A 29 VACDGGEGALGHPRVWLSIPHETG---------FVECGYCDRRYIH 65 (80) T ss_dssp EEECCCSTTCCCCCEEEECCTTTC---------EEECSSSSCEEEE T ss_pred EEEECCCCCCCCCEEEEECCCCCC---------EEECCCCCCEEEC T ss_conf 997398998999889387579998---------6988899886670 No 13 >2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} Probab=56.31 E-value=3 Score=20.97 Aligned_cols=36 Identities=22% Similarity=0.528 Sum_probs=25.1 Q ss_pred CCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 10558401373159997689-88875553333236888877575232 Q gi|254780202|r 12 TLQGEGGHAGRVAVFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGI 57 (211) Q Consensus 12 SiQGEG~~~G~p~vFiRl~G-CnL~c~~~~~~~~~~C~~CDT~y~~~ 57 (211) +=.|.+.-.|-|-||+.+.. =+- .-|+||++.|... T Consensus 17 ~CdGg~g~lgHP~Vyl~l~~~~~~----------v~CpYC~~~fv~k 53 (67) T 2jrr_A 17 ACDGGEGALGHPRVWLQIPEDTGW----------VECPYCDCKYVLK 53 (67) T ss_dssp EEEESSTTSEEEEEEEECCTTTSE----------EEETTTTEEEEET T ss_pred EECCCCCCCCCCEEEEECCCCCCE----------EECCCCCCEEEEC T ss_conf 968999989999898985699986----------9898898798987 No 14 >2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Probab=55.18 E-value=11 Score=17.29 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=30.2 Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 3899807720000-3517899998689879997278886 Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ..+.++|++=|.. ++.+|++.|++.|.++..|.++..| T Consensus 110 ~~~~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~lP 148 (445) T 2pqc_A 110 FDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLP 148 (445) T ss_dssp SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEE T ss_pred CEEEEECCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 439975863416413899999998547457605798467 No 15 >3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis} Probab=55.06 E-value=4.8 Score=19.60 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=32.5 Q ss_pred CCCEEEEECCCCCCCC-----C--CHHHHHHHHCCC-------EEEEECCCCCCCCCC Q ss_conf 8738998077200003-----5--178999986898-------799972788866788 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-----D--VPLIQALNKRGF-------EIAVETNGTIEPPQG 127 (211) Q Consensus 84 ~~~~VviTGGEPllq~-----l--~~L~~~l~~~g~-------~v~IETnGt~~~~~~ 127 (211) +.+.|+|-.|+.+... + ..|...|+..|+ .+-+||||.+.+... T Consensus 14 g~p~vli~~G~i~~~~l~k~~it~~dl~~~LR~~gi~~~~~V~~ailE~~G~iSvi~k 71 (153) T 3c6f_A 14 GEPNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPK 71 (153) T ss_dssp --CEEEEETTEECHHHHHHTTCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCEEEEEC T ss_pred CCCEEEEECCEECHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHEEEEECCCCEEEEEC T ss_conf 9948999999996999978499999999999974999988901889918998999983 No 16 >1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A* Probab=53.66 E-value=8.3 Score=17.99 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=29.4 Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 3899807720000-3517899998689879997278886 Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ..+++||++.|.+ ++.+|++.|.+.|.++..+ +|..+ T Consensus 107 ~~~~l~Gd~sl~~RPm~~li~~L~~lGa~i~~~-~g~~~ 144 (419) T 1ejd_A 107 GQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLE-EGYVK 144 (419) T ss_dssp EEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEE-TTEEE T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEC-CCCEE T ss_conf 179843885468897478999998678779960-79255 No 17 >1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A* Probab=47.89 E-value=14 Score=16.54 Aligned_cols=51 Identities=10% Similarity=0.236 Sum_probs=34.2 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEEC Q ss_conf 78999999999875216678738998077200003-5178999986898799972 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVET 118 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IET 118 (211) ...++..+.+.+... .+...+.+++|.|+++. ...++..+.+.|+.+.+-- T Consensus 77 ~~~~e~~~~~~~~~~---~G~~V~~L~~GDP~~y~~~~~l~~~~~~~~i~vevVP 128 (285) T 1cbf_A 77 MHLEEMVGTMLDRMR---EGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVP 128 (285) T ss_dssp CCHHHHHHHHHHHHT---TTCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEEC T ss_pred CCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECC T ss_conf 899999999999997---8997999938886631658999999997797599838 No 18 >2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... Probab=46.26 E-value=14 Score=16.37 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.1 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC Q ss_conf 8738998077200003-51789999868987999727 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn 119 (211) ..+.+.+++|.|+++. ...+++.+++.|+.+.+--+ T Consensus 77 ~~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~v~vvPG 113 (265) T 2z6r_A 77 ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHA 113 (265) T ss_dssp TSCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEECC T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 9988999579988888099999999986996798047 No 19 >2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli} Probab=41.25 E-value=14 Score=16.56 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=20.0 Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 1789999868987999727888667 Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIEPP 125 (211) Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~~~ 125 (211) ..|-+.-++.|+.+.+||.|+.-+. T Consensus 26 eaLe~aA~~~G~~ikVEtqGa~G~~ 50 (111) T 2kyr_A 26 QALEEAAVEAGYEVKIETQGADGIQ 50 (111) T ss_dssp HHHHHHHHHTSSEEEEEEEETTEEE T ss_pred HHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 9999999987996999965877877 No 20 >1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1 Probab=39.73 E-value=18 Score=15.71 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=27.7 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC Q ss_conf 8738998077200003-51789999868987999727 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn 119 (211) ..+.+.+++|.|+++. ...|+..+++.|+.+.+=-+ T Consensus 83 ~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPG 119 (294) T 1wde_A 83 DAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPG 119 (294) T ss_dssp CCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEECC T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 7987999679998767189999999988997899788 No 21 >3kgf_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathwa aromatic biosynthesis; HET: PHE TRP; 2.00A {Mycobacterium tuberculosis} PDB: 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 2w19_A 2w1a_A* Probab=39.56 E-value=18 Score=15.69 Aligned_cols=54 Identities=13% Similarity=0.311 Sum_probs=38.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCEE Q ss_conf 88660789999999998752166787389980--77200003517899998689879 Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFEI 114 (211) Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~v 114 (211) +-|..++.+++++.++.+.+... +.+.+.|| |-.=....+-+|+++.++.|..| T Consensus 308 KvGP~~~p~el~~L~~~LnP~ne-pGRltLI~RmGa~ki~~~LP~Li~aV~~~G~~V 363 (464) T 3kgf_A 308 KLGPNMTPELAVEYVERLDPHNK-PGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQV 363 (464) T ss_dssp EECTTCCHHHHHHHHHHHCTTCC-TTSEEEEECCCTTTHHHHHHHHHHHHHTTSCCC T ss_pred EECCCCCHHHHHHHHHHHCCCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCE T ss_conf 24899999999999998498887-871899860370789988799999998779955 No 22 >2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca component; PTS system, fructose specific IIB subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2 Probab=38.75 E-value=12 Score=16.90 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=19.3 Q ss_pred HHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 789999868987999727888667 Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGTIEPP 125 (211) Q Consensus 102 ~L~~~l~~~g~~v~IETnGt~~~~ 125 (211) .|-+.-++.|+.+.+||+|+.-+. T Consensus 24 aLe~aA~~~g~~ikVEtqGa~Gie 47 (106) T 2r48_A 24 NLQKAADRLGVSIKVETQGGIGVE 47 (106) T ss_dssp HHHHHHHHHTCEEEEEEEETTEEE T ss_pred HHHHHHHHCCCEEEEEECCCCCCC T ss_conf 999999987996999955877877 No 23 >2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Probab=37.55 E-value=18 Score=15.68 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=20.0 Q ss_pred CCCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 03517899998689879997278886 Q gi|254780202|r 98 QVDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 98 q~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ..+.++++.|++.|+++.|=||+... T Consensus 21 ~~~~~~l~~lk~~g~~~~i~Tn~~~~ 46 (137) T 2pr7_A 21 RRWRNLLAAAKKNGVGTVILSNDPGG 46 (137) T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCG T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHH T ss_conf 88999999999879959998899989 No 24 >2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc component; fructose specific IIB subunit, PFAM02379, structural genomics; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2 Probab=35.81 E-value=12 Score=16.86 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=19.6 Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 1789999868987999727888667 Q gi|254780202|r 101 VPLIQALNKRGFEIAVETNGTIEPP 125 (211) Q Consensus 101 ~~L~~~l~~~g~~v~IETnGt~~~~ 125 (211) ..|-+.-+++|+.+.+||.|+.-+. T Consensus 23 eaLekaA~~~G~~ikVEtqG~~g~~ 47 (106) T 2r4q_A 23 DALKEKAKELGVEIKVETNGSSGIK 47 (106) T ss_dssp HHHHHHHHHHTCCEEEEEEETTEEE T ss_pred HHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 9999999987995999945877877 No 25 >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Probab=35.71 E-value=21 Score=15.30 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=31.7 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEE Q ss_conf 89999999998752166787389980772000035-17899998689879997 Q gi|254780202|r 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE 117 (211) Q Consensus 66 ~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IE 117 (211) ..+++.+.+.+... .+...+.+|+|.|+++.. ..++..+.+.|+.+.+- T Consensus 278 ~~~~~~~~l~~~~~---~G~~Va~l~~GDP~~ys~~~~~~~~~~~~~i~veVV 327 (457) T 1pjq_A 278 PQEEINQILLREAQ---KGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVV 327 (457) T ss_dssp TTHHHHHHHHHHHH---TTCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEE T ss_pred HHHHHHHHHHHHHH---CCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEC T ss_conf 07899999999997---498599990688644166999999876378369974 No 26 >1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1 Probab=35.55 E-value=9.8 Score=17.49 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=19.1 Q ss_pred CCHHHHHHHHCCCEEEEEC-CCCCCC Q ss_conf 5178999986898799972-788866 Q gi|254780202|r 100 DVPLIQALNKRGFEIAVET-NGTIEP 124 (211) Q Consensus 100 l~~L~~~l~~~g~~v~IET-nGt~~~ 124 (211) ...+++.+......+|+|| ||++.- T Consensus 12 Vq~~L~~~~~~~VYiHlETTnGaYa~ 37 (119) T 1njh_A 12 VQASLERYADRPVYIHLETTTGSYSA 37 (119) T ss_dssp HHHHHHHTTTSCEEEEEEEEECC--- T ss_pred HHHHHHHHCCCCEEEEEEECCHHHHH T ss_conf 99999984599549999843626665 No 27 >3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas shigelloides} Probab=31.98 E-value=21 Score=15.28 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=11.1 Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHCCCEE Q ss_conf 738998077200003517899998689879 Q gi|254780202|r 85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 (211) Q Consensus 85 ~~~VviTGGEPllq~l~~L~~~l~~~g~~v 114 (211) .+.|.||||-=.+= ..|++.|.+.|++| T Consensus 38 ~K~ILVTGgtGfIG--s~lv~~L~~~g~~V 65 (364) T 3lu1_A 38 PKTWLITGVAGFIG--SNLLEKLLKLNQVV 65 (364) T ss_dssp CCEEEEETTTSHHH--HHHHHHHHTTTCEE T ss_pred CCEEEEECCCCHHH--HHHHHHHHHCCCEE T ss_conf 99899968875899--99999999788989 No 28 >1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Probab=30.13 E-value=25 Score=14.70 Aligned_cols=37 Identities=11% Similarity=0.328 Sum_probs=28.7 Q ss_pred CCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCC Q ss_conf 738998077200003-5178999986898799972788 Q gi|254780202|r 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 85 ~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt 121 (211) .+.+.++.|.|+++. ...++..+++.|+.+.+--.=| T Consensus 88 ~~vv~l~~GDP~i~~~~~~l~~~~~~~g~~veviPGiS 125 (268) T 1vhv_A 88 KSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGAS 125 (268) T ss_dssp SEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCC T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCC T ss_conf 98689966998666637999999997799379936846 No 29 >1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Probab=29.95 E-value=20 Score=15.33 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=8.8 Q ss_pred CEEEEECCCC Q ss_conf 1599976898 Q gi|254780202|r 23 VAVFCRFSGC 32 (211) Q Consensus 23 p~vFiRl~GC 32 (211) +.+++||.|+ T Consensus 36 ~~V~v~l~Ga 45 (74) T 1th5_A 36 PIVKVRLTGP 45 (74) T ss_dssp TEEEECCCSS T ss_pred CEEEEEECCC T ss_conf 9999997378 No 30 >2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Probab=29.24 E-value=26 Score=14.59 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=26.0 Q ss_pred CCCEEEEECCCCCCCCC-CHHHHHHHHCCCEEEEE Q ss_conf 87389980772000035-17899998689879997 Q gi|254780202|r 84 EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE 117 (211) Q Consensus 84 ~~~~VviTGGEPllq~l-~~L~~~l~~~g~~v~IE 117 (211) ....+.+++|.|+++.. ..+++.+.+.++.+.+- T Consensus 96 g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~vevI 130 (259) T 2e0n_A 96 GRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT 130 (259) T ss_dssp TCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEE T ss_conf 99489990687544463999977742677847996 No 31 >3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum} Probab=28.87 E-value=27 Score=14.55 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=24.6 Q ss_pred CEEEEE-CCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 389980-77200003-51789999868987999 Q gi|254780202|r 86 RYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 86 ~~VviT-GGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ..+.+| +|-|.+.+ -..|++.+++.|++|.. T Consensus 81 ~v~lvSdaG~P~IaDPG~~lv~~a~~~gi~V~~ 113 (117) T 3hh1_A 81 DVALVTDAGTPAISDPGYTMASAAHAAGLPVVP 113 (117) T ss_dssp CEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEE T ss_pred CEEEEECCCCCEEECCHHHHHHHHHHCCCCEEE T ss_conf 699995589963767699999999986995895 No 32 >3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459} Probab=28.66 E-value=27 Score=14.53 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.8 Q ss_pred CCHHHHHHHHCCCEEEEECCCCC Q ss_conf 51789999868987999727888 Q gi|254780202|r 100 DVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 100 l~~L~~~l~~~g~~v~IETnGt~ 122 (211) ..++++.|++.|+++.|=||++. T Consensus 39 ~~e~L~~Lk~~g~kl~ivTN~~~ 61 (189) T 3ib6_A 39 AKETLEKVKQLGFKQAILSNTAT 61 (189) T ss_dssp HHHHHHHHHHTTCEEEEEECCSS T ss_pred HHHHHHHHHHCCCCEEEEECCCC T ss_conf 99999999978994999969986 No 33 >3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} Probab=27.85 E-value=28 Score=14.44 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.1 Q ss_pred EEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 998077200003-51789999868987999 Q gi|254780202|r 88 CVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 88 VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ++..||-|++.. -.++++.+.+.|++|.+ T Consensus 93 l~sdaG~P~I~dpg~~lv~~~~~~~i~v~v 122 (296) T 3kwp_A 93 QVSDAGMPSISDPGHELVNACIDAHIPVVP 122 (296) T ss_dssp EECSSBCTTSSHHHHHHHHHHHHTTCCEEE T ss_pred EEECCCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 997699851022799999986277358998 No 34 >3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Probab=25.66 E-value=30 Score=14.18 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=27.2 Q ss_pred CCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC Q ss_conf 738998077200003-51789999868987999727 Q gi|254780202|r 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 (211) Q Consensus 85 ~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn 119 (211) .+.+.+.+|.|+++. ...++..+.+.|+.+.+--. T Consensus 96 g~vv~l~~GDP~i~~~~~~~~~~~~~~gi~~eviPG 131 (292) T 3i4t_A 96 KNVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHN 131 (292) T ss_dssp SEEEEEESBCHHHHCTTHHHHHHHHHHTCCEEEECC T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEECCC T ss_conf 998999679998888599999999976992898388 No 35 >1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Probab=24.98 E-value=31 Score=14.09 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=27.3 Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCC Q ss_conf 3899807720000-3517899998689879997278 Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120 (211) Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnG 120 (211) ..|.++||+=|.. ++.+|++.|++.|..+.-+++. T Consensus 107 ~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~ 142 (427) T 1rf6_A 107 FEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTER 142 (427) T ss_dssp SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTT T ss_pred CEECCCCCHHHHCCCCCHHHHHHHHCCCEEEECCCC T ss_conf 333466886662653201234577428479831355 No 36 >3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A Probab=24.53 E-value=32 Score=14.04 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=30.3 Q ss_pred CCCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEEC-CCCCC Q ss_conf 873899807720000-35178999986898799972-78886 Q gi|254780202|r 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVET-NGTIE 123 (211) Q Consensus 84 ~~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IET-nGt~~ 123 (211) ....+.++||+-|-. ++.++++.|++.|.++..+. +|..| T Consensus 133 ~~~~v~~~G~~sL~~Rp~~~l~~~L~~lGa~i~~~~~~~~~P 174 (450) T 3nvs_A 133 GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPP 174 (450) T ss_dssp SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSC T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 563497058555532048789999997698999811577341 No 37 >2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4 Probab=23.98 E-value=25 Score=14.71 Aligned_cols=14 Identities=14% Similarity=0.707 Sum_probs=11.0 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 36888877575232 Q gi|254780202|r 44 SAQCRFCDTDFVGI 57 (211) Q Consensus 44 ~~~C~~CDT~y~~~ 57 (211) ...|.+|+.+|+.. T Consensus 13 ~~eC~~C~vkYs~~ 26 (55) T 2yrk_A 13 KPECTLCGVKYSAR 26 (55) T ss_dssp CSCCTTTTCCCCSS T ss_pred CCCCCCCCEEECCC T ss_conf 45377446130564 No 38 >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Probab=23.63 E-value=33 Score=13.92 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=30.8 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-C-CHHHHHHHHCCCEEEEE Q ss_conf 78999999999875216678738998077200003-5-17899998689879997 Q gi|254780202|r 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D-VPLIQALNKRGFEIAVE 117 (211) Q Consensus 65 ~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~-l-~~L~~~l~~~g~~v~IE 117 (211) ||++.+.+.|.+.........+.|.||||-=.=-. + ..|.+.|...++.+.+- T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~i 56 (208) T 3c8u_A 2 MTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56 (208) T ss_dssp CCHHHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 8889999999997503499968999889898999999999999973428981575 No 39 >3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural genomics, protein structure initiative; 2.10A {Bacillus halodurans} Probab=23.39 E-value=33 Score=13.89 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=24.3 Q ss_pred EEEECCCCCCCCCCHHHHHHHHCCCEEEE-ECCCCC Q ss_conf 99807720000351789999868987999-727888 Q gi|254780202|r 88 CVLTGGEPLLQVDVPLIQALNKRGFEIAV-ETNGTI 122 (211) Q Consensus 88 VviTGGEPllq~l~~L~~~l~~~g~~v~I-ETnGt~ 122 (211) +-||||--.......+++.|.+.|+.|++ =|..+. T Consensus 12 lgITGs~a~~~~~l~li~~L~~~g~~V~vI~S~~A~ 47 (201) T 3lqk_A 12 FGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTVQ 47 (201) T ss_dssp EECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCSC T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHH T ss_conf 997585999999999999999889969999774288 No 40 >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Probab=23.29 E-value=12 Score=16.85 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=19.3 Q ss_pred CCCCCCCCCCCCC--CCCCCCCCH---HHHHHHHHHHHHCCCCCCCEEEEECCCCCC Q ss_conf 8888775752325--888660789---999999998752166787389980772000 Q gi|254780202|r 46 QCRFCDTDFVGIQ--GTKGGRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 (211) Q Consensus 46 ~C~~CDT~y~~~~--~~~~~~~~~---~~i~~~i~~~~~~~~~~~~~VviTGGEPll 97 (211) .|+||+-.-.+.+ +-.....++ .+..+.+... +....+. ++-|||..- T Consensus 10 ~Cp~C~~~k~~L~~~~i~y~~~~i~~~~~~~~~~~~~---g~~tvP~-v~i~g~~i~ 62 (75) T 1r7h_A 10 ACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL---GYVQAPV-VEVDGEHWS 62 (75) T ss_dssp TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT---TCBCCCE-EEETTEEEE T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC---CCCCCCE-EEECCEEEE T ss_conf 9976999999980249944999746898999999971---7996498-999999994 No 41 >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Probab=22.69 E-value=34 Score=13.80 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCC Q ss_conf 99999999875216678738998077200003517899998689879997278 Q gi|254780202|r 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 (211) Q Consensus 68 ~~i~~~i~~~~~~~~~~~~~VviTGGEPllq~l~~L~~~l~~~g~~v~IETnG 120 (211) ..+++++++... +...+.=|.-+..+-.++++++.+.|+.+...|-- T Consensus 123 ~~iL~~L~~~~v------~ATFFv~G~~i~~~~~~~~k~~~~~GheIgnHt~~ 169 (311) T 2w3z_A 123 PKILDVLAQQHV------HATFFLVGCNITDKVKPILQRQITEGHALGIHSFS 169 (311) T ss_dssp HHHHHHHHHTTC------CCEEEECGGGCCGGGHHHHHHHHHTTCEEEECCSS T ss_pred HHHHHHHHHCCC------CEEEEECCCCHHHCHHHHHHHHHHCCCEEEEECCC T ss_conf 999999998599------78998257434345699999999749889830351 No 42 >2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/beta/alpha) sandwich; NMR {Escherichia coli CFT073} SCOP: d.350.1.1 Probab=22.66 E-value=28 Score=14.42 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.0 Q ss_pred EEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 8998077200003-51789999868987999 Q gi|254780202|r 87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 87 ~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) .+.+|+..+|.+. ....++.|.++||..++ T Consensus 56 ~l~Lt~~rkLArad~~~Vl~~l~e~GfyLQm 86 (110) T 2h7a_A 56 ILPLDGRKKLVNADIEKVKQALTEQGYYLQL 86 (110) T ss_dssp EECSSSCCCCSSSCHHHHHHHHHHTSEEEEC T ss_pred EEECCCCCHHHHCCHHHHHHHHHHCCEEEEC T ss_conf 9724887602109899999999868978978 No 43 >2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} SCOP: e.59.1.1 Probab=22.08 E-value=35 Score=13.72 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=6.7 Q ss_pred HHHHHHHHCCCCE Q ss_conf 9999999678977 Q gi|254780202|r 187 LAISYCFQNPKWR 199 (211) Q Consensus 187 ~~i~~~~~~~~~R 199 (211) +.+|++.+..+++ T Consensus 284 l~LDlla~e~Gy~ 296 (309) T 2fiy_A 284 LALDMRLAEDGYL 296 (309) T ss_dssp HHHHHHHHHTTCE T ss_pred HHHHHHHHHCCCC T ss_conf 6888999867998 No 44 >2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=21.59 E-value=18 Score=15.77 Aligned_cols=10 Identities=40% Similarity=1.155 Sum_probs=7.5 Q ss_pred CCCCCCCCCC Q ss_conf 6888877575 Q gi|254780202|r 45 AQCRFCDTDF 54 (211) Q Consensus 45 ~~C~~CDT~y 54 (211) +.|+|||.-| T Consensus 10 ~KCPyCd~~F 19 (37) T 2elp_A 10 MKCPYCDFYF 19 (37) T ss_dssp EECSSSSCEE T ss_pred CCCCCHHHHH T ss_conf 1487016888 Done!