RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780202|ref|YP_003064615.1| hypothetical protein
CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
         (211 letters)



>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical,
           SAM radical, activase, glycyl radical, 4Fe- 4S,
           carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A
           {Escherichia coli} PDB: 3cb8_A* (A:)
          Length = 245

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 15/144 (10%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           S+     + +  G   G    F  F  GC +           +C +C           G 
Sbjct: 1   SVIGRIHSFESCGTVDGPGIRFITFFQGCLM-----------RCLYCHNRD-TWDTHGGK 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGT 121
              V+ L   +          G     +GGE +LQ +      +A  K G    ++TNG 
Sbjct: 49  EVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGF 108

Query: 122 IEPPQGIDWICVSPKAGCDLKIKG 145
           +     +    +       L +K 
Sbjct: 109 VRRYDPVIDELLEVTDLVMLDLKQ 132


>3can_A Pyruvate-formate lyase-activating enzyme; structural
           genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides
           vulgatus atcc 8482} (A:)
          Length = 182

 Score = 35.6 bits (81), Expect = 0.005
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 89  VLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
              GGEPLL  +    +++   ++G   AV+T   
Sbjct: 8   TFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLL 42


>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM
           barrel, ligand binding protein; HET: SAM; 2.20A
           {Staphylococcus aureus} (A:1-313)
          Length = 313

 Score = 30.3 bits (66), Expect = 0.17
 Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 14/117 (11%)

Query: 31  GCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            CN            +C +C   +  G       +  +    ++     +  E   +   
Sbjct: 23  RCNF-----------RCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIR 71

Query: 90  LTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           +TGGEPL++ D+   + +     G E    T   +   +    +  +     ++ + 
Sbjct: 72  ITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLD 128


>2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme
           iiabc component; fructose specific IIB subunit,
           PFAM02379, structural genomics; HET: MSE; 1.60A
           {Bacillus subtilis subsp} (A:)
          Length = 106

 Score = 29.3 bits (66), Expect = 0.37
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L +   + G EI VETNG+      + 
Sbjct: 25  LKEKAKELGVEIKVETNGSSGIKHKLT 51


>2hx1_A Predicted sugar phosphatases of the HAD superfamily;
           ZP_00311070.1, possible sugar phosphatase, structural
           genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
           (A:1-83,A:206-284)
          Length = 162

 Score = 29.5 bits (66), Expect = 0.38
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
           VL     LL         L  +G +  + TN     P+ +
Sbjct: 24  VLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQL 63


>2r48_A Phosphotransferase system (PTS) mannose-specific enzyme
           iibca component; PTS system, fructose specific IIB
           subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis
           subsp} (A:)
          Length = 106

 Score = 29.3 bits (66), Expect = 0.41
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L +A ++ G  I VET G I     + 
Sbjct: 25  LQKAADRLGVSIKVETQGGIGVENKLT 51


>2om6_A Probable phosphoserine phosphatase; rossmann fold,
           B-hairpin, four-helix bundle, structural genomics,
           NPPSFA; 2.20A {Pyrococcus horikoshii OT3}
           (A:1-14,A:100-235)
          Length = 150

 Score = 27.8 bits (61), Expect = 1.2
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
              +Q + +RG + AV  N    P      +
Sbjct: 20  KEALQFVKERGLKTAVIGNVXFWPGSYTRLL 50


>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens}
           (A:1-28,A:131-261)
          Length = 159

 Score = 27.7 bits (61), Expect = 1.3
 Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQELK 150
           VP ++   + G ++ + ++G++E              ++ +          K++     K
Sbjct: 34  VPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRK 93

Query: 151 LVFPQVNVSPENYIGFDFERFSLQP 175
           +    +  S  N +           
Sbjct: 94  IAD-SIGCSTNNILFLTDVTREASA 117


>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A
           {Homo sapiens} (A:)
          Length = 238

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 8/76 (10%), Positives = 15/76 (19%), Gaps = 23/76 (30%)

Query: 159 SPENYIGFDFERFSLQP--------------MDGPFLEE---------NTNLAISYCFQN 195
             E ++  D E   L                       E            L        
Sbjct: 8   RAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCXC 67

Query: 196 PKWRLSVQTHKFIGIR 211
           P+   + +  +  G+ 
Sbjct: 68  PERPFTAKASEITGLS 83


>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
           phosphatase, carbohydrate metabolism, hydrolase; 1.8A
           {Escherichia coli} (A:1-71,A:178-250)
          Length = 144

 Score = 27.2 bits (60), Expect = 1.8
 Identities = 6/40 (15%), Positives = 14/40 (35%)

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
           VL      +      +  +  +G  + + TN   +  Q +
Sbjct: 13  VLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDL 52


>3epr_A Hydrolase, haloacid dehalogenase-like family; structural
           genomics, unknown function, HAD superfamily hydrolase.,
           PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB:
           1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264)
          Length = 154

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
            +  G+  +      I+ L ++G    + TN T   P+ +
Sbjct: 15  TIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESV 54


>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical
           protein, structural genomics, PSI, protein structure
           initiative; 2.80A {Enterococcus faecalis V583}
           (A:1-74,A:185-264)
          Length = 154

 Score = 26.8 bits (59), Expect = 2.5
 Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ------GIDWICVSPKAGC 139
            +  G+  +      ++ L ++       TN T + P+        ++    P +  
Sbjct: 15  TIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLV 71


>3iru_A Phoshonoacetaldehyde hydolase like protein;
           phosphonoacetaldehyde hydrolase like protein, structural
           genomics, PSI-2; 2.30A {Oleispira antarctica}
           (A:1-26,A:113-258)
          Length = 172

 Score = 26.6 bits (58), Expect = 2.7
 Identities = 3/28 (10%), Positives = 7/28 (25%)

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGI 128
             +   L  +G ++   T          
Sbjct: 31  KEVFDKLIAQGIKVGGNTGYGPGXXAPA 58


>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
           genomics, NYSGXRC, NEW YORK SGX research center for
           structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
           2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306)
          Length = 166

 Score = 26.5 bits (58), Expect = 3.0
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
              VL  GE  +     L++ L + G      +N +      +
Sbjct: 28  CDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPEL 70


>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase,
           metal binding-site, hexamer, cytoplasm, arginine
           metabolism; 2.10A {Lactobacillus hilgardii} (A:174-332)
          Length = 159

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 9/56 (16%), Positives = 15/56 (26%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV 158
           L+      G  I +     + P +    I          K+    +L       NV
Sbjct: 20  LLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNV 75


>3ib6_A Uncharacterized protein; structural genomics, unknown
           function, PSI-2, protein structure initiative; 2.20A
           {Listeria monocytogenes CLIP81459} (A:)
          Length = 189

 Score = 26.3 bits (57), Expect = 3.3
 Identities = 5/31 (16%), Positives = 14/31 (45%)

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
              ++ + + GF+ A+ +N      + I  +
Sbjct: 40  KETLEKVKQLGFKQAILSNTATSDTEVIKRV 70


>1qyi_A ZR25, hypothetical protein; structural genomics, PSI,
           protein structure initiative, northeast structural
           genomics consortium, NESG; 2.50A {Staphylococcus aureus
           subsp} (A:1-12,A:207-384)
          Length = 190

 Score = 26.4 bits (57), Expect = 3.3
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 101 VPLIQALNKRGFEIAVETNGT 121
             L+  L   GFE+ + T   
Sbjct: 27  KVLLNDLKGAGFELGIATGRP 47


>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
           cytoplasm, detoxification, magnesium, metal-binding,
           peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens}
           PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A*
           1zd3_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A*
           (A:1-16,A:101-227)
          Length = 143

 Score = 26.2 bits (57), Expect = 3.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
           +     L K+GF  A+ TN  ++
Sbjct: 22  LQAALMLRKKGFTTAILTNTWLD 44


>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural
           genomics, PSI, protein structure initiative; 1.40A
           {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190)
          Length = 124

 Score = 26.1 bits (57), Expect = 3.5
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           + G K   Y    GG     V   L++ ++ +G    + ++  
Sbjct: 1   MKGMKYHDYIWDLGGTLFEGV-SDLLEDISNQGGRHFLVSHRN 42


>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing
           protein 3; HDHD3, structural genomics, structural
           genomics consortium, SGC; 1.55A {Homo sapiens}
           (A:1-17,A:102-263)
          Length = 179

 Score = 26.3 bits (57), Expect = 3.7
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 101 VPLIQALNKRGFEIAVETNGT 121
              ++    RG  +AV +N  
Sbjct: 28  EDTLRECRTRGLRLAVISNFD 48


>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural
           genomics, joint center for structural genomics, JCSG,
           protein structure initiative; 2.00A {Thermotoga
           maritima} (A:)
          Length = 213

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 15/88 (17%)

Query: 88  CVLTGGEPLLQVDVPLIQALNKRGFEIA--VETNGTIEPPQ---------GIDWICVSPK 136
            V+  G  L      +   L KR  +I   ++        +          I    V   
Sbjct: 35  EVVKVGHNLAIHGKKIFDELAKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSC 94

Query: 137 AGCD----LKIKGGQELKLVFPQVNVSP 160
           AG +          + + +V    ++  
Sbjct: 95  AGYESVERALSATDKHVFVVVKLTSMEG 122


>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
           phosphonotase, metal binding; 2.30A {Bacillus cereus}
           (A:1-19,A:104-267)
          Length = 183

 Score = 25.9 bits (56), Expect = 4.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
             +I +L +RG +I   T  T E
Sbjct: 25  KEVIASLRERGIKIGSTTGYTRE 47


>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2
           functional domains, IMPCH domain = alpha/beta/alpha;
           HET: G; 1.75A {Gallus gallus} (A:1-200)
          Length = 200

 Score = 25.8 bits (56), Expect = 4.1
 Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 101 VPLIQALNKRGFEIAVETNGT 121
           V   ++LN  G  + + + GT
Sbjct: 19  VEFARSLNALGLGL-IASGGT 38


>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL,
           phosphorolytic, hydrolase/transferase complex; 3.35A
           {Homo sapiens} (G:210-289)
          Length = 80

 Score = 25.7 bits (57), Expect = 4.2
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 96  LLQVDVPLIQALNKR-GFEIAVETNGTI 122
           LL  D  +IQ + K    EI    NG I
Sbjct: 15  LLAPDCEIIQEVGKLYPLEIVFGMNGRI 42


>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP}
           (A:1-19,A:92-232)
          Length = 160

 Score = 25.9 bits (56), Expect = 4.6
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
              ++ L +RG ++A+ +NG+ +
Sbjct: 29  PDSLRELKRRGLKLAILSNGSPQ 51


>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid
           dehalogenase, protein phosphatase, alternative splicing,
           hydrolase, metal-binding; 1.75A {Homo sapiens} PDB:
           1u7o_A 1u7p_A (A:27-187)
          Length = 161

 Score = 25.8 bits (56), Expect = 4.8
 Identities = 3/23 (13%), Positives = 8/23 (34%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
             +++ L   G   A  +  +  
Sbjct: 48  PEVLKRLQSLGVPGAAASRTSEI 70


>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural
           genomics, PSI-2, protein structure initiative; 2.00A
           {Bacteroides fragilis nctc 9343} (A:1-20,A:86-225)
          Length = 160

 Score = 25.5 bits (55), Expect = 5.0
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 101 VPLIQALNKRGFEIAVETNGT 121
           +P +  L K+G  I + +   
Sbjct: 30  LPTLTHLKKQGIRIGIISTKY 50


>2zg6_A Putative uncharacterized protein ST2620, probable
           2-haloalkanoic; probable 2-haloalkanoic acid
           dehalogenase, hydrolase, structural genomics; 2.40A
           {Sulfolobus tokodaii} (A:1-12,A:99-220)
          Length = 134

 Score = 25.8 bits (56), Expect = 5.0
 Identities = 4/21 (19%), Positives = 13/21 (61%)

Query: 101 VPLIQALNKRGFEIAVETNGT 121
           +  ++ L   G+++A+ +N +
Sbjct: 15  LEFLEGLKSNGYKLALVSNAS 35


>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate,
           structural genomics, PSI, protein structure initiative;
           HET: G1P; 2.00A {Escherichia coli K12} (A:1-16,A:94-206)
          Length = 129

 Score = 25.7 bits (56), Expect = 5.1
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
           + ++  L ++G  + V +N    
Sbjct: 20  IAIMHKLREQGHRVVVLSNTNRL 42


>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural
           genomics, PSI-2, protein structure initiative; 2.10A
           {Aquifex aeolicus} PDB: 2yy6_A (A:1-12,A:87-222)
          Length = 148

 Score = 25.4 bits (55), Expect = 5.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 97  LQVDVP-LIQALNKRGFEIAVETNGT 121
           L  ++P  ++AL  +GF++AV +N  
Sbjct: 10  LDGEIPYTLEALKSKGFKLAVVSNKL 35


>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1,
           structural genomics, PSI, protein structure initiative;
           2.10A {Streptococcus pneumoniae TIGR4} (A:1-15,A:86-207)
          Length = 137

 Score = 25.7 bits (56), Expect = 5.3
 Identities = 2/21 (9%), Positives = 9/21 (42%)

Query: 101 VPLIQALNKRGFEIAVETNGT 121
             ++   ++ G +  + T+  
Sbjct: 21  REVLAWADESGIQQFIYTHKG 41


>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4
           protein), structural genomics, PSI, protein structure
           initiative; 2.28A {Saccharomyces cerevisiae}
           (A:1-45,A:138-253)
          Length = 161

 Score = 25.4 bits (55), Expect = 5.7
 Identities = 0/23 (0%), Positives = 4/23 (17%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
             +    +       +      +
Sbjct: 46  KRVFIYSSGSVKAQKLLFGYVQD 68


>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A
          {Leishmania major} (A:135-232,A:440-467)
          Length = 126

 Score = 25.3 bits (55), Expect = 6.0
 Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 6/65 (9%)

Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQ----WITGEKE 84
          G      +    L A       D + +Q TK      + +    +++           K 
Sbjct: 25 GLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFKR 84

Query: 85 GRYCV 89
          G    
Sbjct: 85 GYSGT 89


>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase,
           structural genomics, NPPSFA; 1.70A {Pyrococcus
           horikoshii OT3} (A:1-12,A:96-241)
          Length = 158

 Score = 25.5 bits (55), Expect = 6.0
 Identities = 5/23 (21%), Positives = 12/23 (52%)

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
             ++  L + G+E+ + T+G   
Sbjct: 17  RKVLIRLKELGYELGIITDGNPV 39


>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA,
           S1 domain, KH domain, hydrolase, RNA-binding, nuclear
           protein; 2.20A {Saccharomyces cerevisiae} (A:91-175)
          Length = 85

 Score = 25.0 bits (55), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 96  LLQVDVPLIQALNKR-GFEIAVETNGTI 122
           L   D PL++ L     FE+A+  NG I
Sbjct: 16  LFNNDFPLLKVLAAHTKFEVAIGLNGKI 43


>1rws_A Hypothetical protein PF1061; residual dipolar couplings,
           structural genomics, unknown function; NMR {Pyrococcus
           furiosus dsm 3638} (A:)
          Length = 77

 Score = 24.7 bits (54), Expect = 9.5
 Identities = 5/48 (10%), Positives = 14/48 (29%), Gaps = 4/48 (8%)

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
            + G    +      G  +      +++A+         + NG +   
Sbjct: 15  KVIGRNIEKEIEWREGMKVRD----ILRAVGFNTESAIAKVNGKVVLE 58


>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
           phosphoribosylpyrophosphate, Zn metal ION, structural
           genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
           (A:40-104,A:301-395)
          Length = 160

 Score = 24.7 bits (54), Expect = 9.7
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 62  GGRYNV----DQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
             R+ V    +++A L+E     +    EG   +    EP+LQ++      
Sbjct: 17  NWRWGVLVGVEEVAKLLEGIPVNVYAMPEGT--IFHPYEPVLQIEGDYADF 65


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,707,317
Number of extensions: 77518
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 42
Length of query: 211
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 126
Effective length of database: 2,082,624
Effective search space: 262410624
Effective search space used: 262410624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)