RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780202|ref|YP_003064615.1| hypothetical protein
CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
(211 letters)
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI,
MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Length = 182
Score = 38.7 bits (89), Expect = 0.001
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
GGEPLL + + +++ ++G AV+T + + D
Sbjct: 8 TFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLID 61
>2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc
component; fructose specific IIB subunit, PFAM02379,
structural genomics; HET: MSE; 1.60A {Bacillus subtilis
subsp} SCOP: c.44.2.2
Length = 106
Score = 28.1 bits (63), Expect = 1.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
L + + G EI VETNG+ +
Sbjct: 25 LKEKAKELGVEIKVETNGSSGIKHKLT 51
>3fr7_A Putative ketol-acid reductoisomerase (OS05G0573700 protein);
rossmann fold, NADPH, knotted protein; 1.55A {Oryza
sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 28.4 bits (63), Expect = 1.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKA 137
GF + + ++ P+ I I V PK
Sbjct: 156 GFLLGHLQSAGLDFPKNISVIAVCPKG 182
>2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca
component; PTS system, fructose specific IIB subunit,
PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} SCOP:
c.44.2.2
Length = 106
Score = 28.1 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
L +A ++ G I VET G I +
Sbjct: 25 LQKAADRLGVSIKVETQGGIGVENKLT 51
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein,
structural genomics, PSI-2; NMR {Escherichia coli}
Length = 111
Score = 27.0 bits (60), Expect = 3.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
L +A + G+E+ +ET G +
Sbjct: 28 LEEAAVEAGYEVKIETQGADGIQNRLT 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 26.8 bits (59), Expect = 3.3
Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 50/105 (47%)
Query: 22 RVAVFCRFSGCNLWSGREQ-----DRLSAQCRFCDT---------------DFVGIQGTK 61
++ V+ F G +L R +R+ C DF G G
Sbjct: 456 QIPVYDTFDGSDL---RVLSGSISERI-VDCIIRLPVKWETTTQFKATHILDF-GPGGAS 510
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
G L L K+G TG V +I A
Sbjct: 511 G-------LGVLTHRN-----KDG-----TG--------VRVIVA 530
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.7 bits (58), Expect = 4.3
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 90 LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
L GG LQ VP ++ + + VET+ + VS + + K+ G
Sbjct: 727 LNGG---LQF-VPELKEFTAKLRKELVETSEVRK--------AVSIETALEHKVVNGNSA 774
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQP 175
+ QV + P I DF L+P
Sbjct: 775 DAAYAQVEIQPRANIQLDFPE--LKP 798
>2he7_A BAND 4.1-like protein 3; FERM domain, DAL-1, EPB41L3A, structural
genomics, structural genomics consortium, SGC, cell
adhesion; 2.00A {Homo sapiens} PDB: 3bin_A 1gg3_A 2rq1_A
Length = 283
Score = 26.6 bits (58), Expect = 4.8
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
+ V L I + F V I + F ++ G F + + +
Sbjct: 205 MLGVCAS---GLLIYRDRLRINRFAWPKVL---KISYKRNNFYIKIRPGEFEQFESTI-- 256
Query: 190 SYCFQNPK-----WRLSVQTHKF 207
+ N + W++ V+ H F
Sbjct: 257 GFKLPNHRAAKRLWKVCVEHHTF 279
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.20A {Listeria
monocytogenes CLIP81459}
Length = 189
Score = 25.9 bits (56), Expect = 7.1
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
++ + + GF+ A+ +N + I +
Sbjct: 42 TLEKVKQLGFKQAILSNTATSDTEVIKRV 70
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 25.7 bits (56), Expect = 7.6
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 56 GIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
G+ G +G GR+ + AD I +W + G+ +LQ
Sbjct: 97 GLVG-RGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQF 141
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,930,822
Number of extensions: 88673
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 11
Length of query: 211
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 123
Effective length of database: 3,559,758
Effective search space: 437850234
Effective search space used: 437850234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)