Query gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 82 No_of_seqs 3 out of 5 Neff 1.7 Searched_HMMs 33803 Date Mon May 23 16:46:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780203.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1vls_A TAR, aspartate recepto 64.3 8.8 0.00026 20.4 3.8 49 19-70 68-116 (146) 2 >2asr_A Aspartate receptor; ch 48.8 25 0.00073 17.8 5.1 48 20-70 66-113 (142) 3 >1f6y_A 5-methyltetrahydrofola 36.8 38 0.0011 16.7 3.4 76 2-79 125-205 (262) 4 >2lig_A Aspartate receptor; ch 25.6 59 0.0017 15.6 5.3 49 19-70 78-126 (164) 5 >2ea9_A JW2626, hypothetical p 25.5 41 0.0012 16.5 2.0 26 11-36 46-71 (105) 6 >3gyx_A Adenylylsulfate reduct 20.8 18 0.00052 18.6 -0.7 34 10-43 84-132 (157) 7 >2inw_A Putative structural pr 18.1 85 0.0025 14.6 2.9 25 12-36 61-85 (133) 8 >1uqr_A 3-dehydroquinate dehyd 17.9 86 0.0025 14.6 2.4 26 42-67 124-149 (154) 9 >1gtz_A 3-dehydroquinate dehyd 16.7 78 0.0023 14.8 1.9 24 42-65 130-153 (156) 10 >3c5t_B Exendin-4, exenatide; 16.0 95 0.0028 14.3 2.2 13 53-65 10-22 (31) No 1 >>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} (A:) Probab=64.33 E-value=8.8 Score=20.43 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=37.2 Q ss_pred HHHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 9999998310300125322478620022899999999999999718855015 Q gi|254780203|r 19 ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE 70 (82) Q Consensus 19 kl~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~ 70 (82) +-...++..-...+.+.|..+++- .|..|..-.-+|+.+|++++|++.- T Consensus 68 ~~f~~y~~~p~~~~~~~l~~~l~~---~Y~~y~~~L~~l~~~l~~g~~~~f~ 116 (146) T 1vls_A 68 AHYANFKNMTPLPAMAEASANVDE---KYQRYQAALAELIQFLDNGNMDAYF 116 (146) T ss_dssp HHHHHHHHSCCCGGGHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHH T ss_pred HHHHHHHCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 999998727789873367899999---9999999999999998869999997 No 2 >>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} (A:) Probab=48.76 E-value=25 Score=17.81 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=32.3 Q ss_pred HHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 999998310300125322478620022899999999999999718855015 Q gi|254780203|r 20 LIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE 70 (82) Q Consensus 20 l~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~ 70 (82) -.+.|...-.+.+-+.|...++- .|..|..-+-+++.+|+++++++.- T Consensus 66 ~~~~f~~~p~~~~~~~l~~~l~~---~y~~~~~~L~~l~~aL~~~d~~~f~ 113 (142) T 2asr_A 66 HYKKFKSMAPLPEMVATSRNIDE---KYKNYYTALTELIDYLDYGNTGAYF 113 (142) T ss_dssp HHHHHHHSCCCGGGHHHHHHHHH---HHHHHHHHHHHHHHHHTTTCHHHHH T ss_pred HHHHHHCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 99998707788753147899999---9999999999999998779999998 No 3 >>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase; carbon dioxide fixation, cobalamin; 2.20A {Moorella thermoacetica atcc 39073} (A:) Probab=36.77 E-value=38 Score=16.70 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=43.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH-HCCH--HCCCCCCCHHHHCCHHH-HHHHHHHHHHHHHHHCCCC-CHHHHHHHHH Q ss_conf 8300140189999997999999983-1030--01253224786200228-9999999999999971885-5015788765 Q gi|254780203|r 2 DDRKYRPSKEEVRDAFPELIKALEK-GLST--FDVEPLKNPVKSHGKGY-ESYISHVCELIELLKNKDF-DGVEIERKSY 76 (82) Q Consensus 2 ~d~kYRPs~eevR~afPkl~K~~Ek-~ls~--y~VdPL~~Pv~i~~~g~-e~Y~~H~CaLi~lLen~~f-~~~~i~rk~~ 76 (82) ++.......+++...|-+++..+++ |+.+ .=+||++.|...+.... ..+ ..+..++.+..-.+ --+.+-||+| T Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iiiDP~i~~~~~~~~~~~~~~--~~i~~i~~~~~~g~pi~~g~Sn~sf 202 (262) T 1f6y_A 125 NKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVL--KTLQQIKMLADPAPKTVLGLSNVSQ 202 (262) T ss_dssp CSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHHH--HHHHHHHTCCSSCCEEEEEGGGGGT T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCHHHHHHHH--HHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 89998888999999999999999983998777998188763454226799999--9999999987079987998327758 Q ss_pred HHH Q ss_conf 322 Q gi|254780203|r 77 NLR 79 (82) Q Consensus 77 n~r 79 (82) .+. T Consensus 203 ~~~ 205 (262) T 1f6y_A 203 NCQ 205 (262) T ss_dssp TCS T ss_pred CCC T ss_conf 996 No 4 >>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} (A:) Probab=25.63 E-value=59 Score=15.56 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=33.9 Q ss_pred HHHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 9999998310300125322478620022899999999999999718855015 Q gi|254780203|r 19 ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE 70 (82) Q Consensus 19 kl~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~ 70 (82) +.++.+++....-.-.-|...++- .|..|..-+-.++++|+++++++.- T Consensus 78 ~~~~~y~~~~~~~~e~~l~~~~~~---~~~~y~~~l~~~~~~l~~gd~~~~~ 126 (164) T 2lig_A 78 AHYANFKNMTPLPAMAEASANVDE---KYQRYQAALAELIQFLDNGNMDAYF 126 (164) T ss_dssp HHHHHHHHSCCCGGGHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 999998707789860188999999---9999999999999998879999998 No 5 >>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} (A:) Probab=25.50 E-value=41 Score=16.48 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHHHHHHHCCHHCCCCC Q ss_conf 99999979999999831030012532 Q gi|254780203|r 11 EEVRDAFPELIKALEKGLSTFDVEPL 36 (82) Q Consensus 11 eevR~afPkl~K~~Ek~ls~y~VdPL 36 (82) ...-.|||.+||-+|..|.+=..+|- T Consensus 46 ~~Ld~aFP~~ikqlE~ml~sGeLnPr 71 (105) T 2ea9_A 46 PKLDVVFPHFISQIESMLTTGELNPR 71 (105) T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTT T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 89999999999999998645898857 No 6 >>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} (A:275-431) Probab=20.77 E-value=18 Score=18.65 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHHHHHHCC---------------HHCCCCCCCHHHHC Q ss_conf 89999997999999983103---------------00125322478620 Q gi|254780203|r 10 KEEVRDAFPELIKALEKGLS---------------TFDVEPLKNPVKSH 43 (82) Q Consensus 10 ~eevR~afPkl~K~~Ek~ls---------------~y~VdPL~~Pv~i~ 43 (82) .+.++..||.+.+.+++.+. -+++||.++|++|. T Consensus 84 ~~~~~~~~~~i~~~~~~~~~e~~~~~~p~~~~~~~~~giDp~~~pI~I~ 132 (157) T 3gyx_A 84 QTSFATMSPAQQKHLEAEAWEDFLDMCVGQANLWAATNCAPEERGSEIM 132 (157) T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTTCCEEEE T ss_pred HHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 5642000345530230466787876668999999975998345888666 No 7 >>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protein structure initiative; 1.50A {Shigella flexneri} (A:) Probab=18.13 E-value=85 Score=14.64 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCCC Q ss_conf 9999979999999831030012532 Q gi|254780203|r 12 EVRDAFPELIKALEKGLSTFDVEPL 36 (82) Q Consensus 12 evR~afPkl~K~~Ek~ls~y~VdPL 36 (82) ..-.|||.+||-+|-.|..=..+|- T Consensus 61 ~LdqaFP~~ikqlE~ml~sGeLnPr 85 (133) T 2inw_A 61 HLDQAFPLLXKQLELXLTGGELNPR 85 (133) T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999999999998633788912 No 8 >>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} (A:) Probab=17.86 E-value=86 Score=14.60 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=21.7 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 20022899999999999999718855 Q gi|254780203|r 42 SHGKGYESYISHVCELIELLKNKDFD 67 (82) Q Consensus 42 i~~~g~e~Y~~H~CaLi~lLen~~f~ 67 (82) |.|.|..||++-+-+|++.|...+.. T Consensus 124 I~G~G~~gY~lAl~al~~~l~~~~~g 149 (154) T 1uqr_A 124 ICGLGAKGYDYALDFAISELQKIQLG 149 (154) T ss_dssp EESSTTHHHHHHHHHHHHHHHTC--- T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 95598799999999999999876513 No 9 >>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} (A:) Probab=16.75 E-value=78 Score=14.84 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.1 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 200228999999999999997188 Q gi|254780203|r 42 SHGKGYESYISHVCELIELLKNKD 65 (82) Q Consensus 42 i~~~g~e~Y~~H~CaLi~lLen~~ 65 (82) |.|.|..||.+-+-+|..+|+.+. T Consensus 130 I~G~G~~gY~lAl~al~~~l~~~~ 153 (156) T 1gtz_A 130 VAGCGVQGYVFGVERIAALAGAGS 153 (156) T ss_dssp EESSTTHHHHHHHHHHHHHHC--- T ss_pred EECCCHHHHHHHHHHHHHHHHCCC T ss_conf 952885899999999999985464 No 10 >>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain, G-protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} (B:) Probab=16.03 E-value=95 Score=14.33 Aligned_cols=13 Identities=46% Similarity=0.424 Sum_probs=9.5 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999999997188 Q gi|254780203|r 53 HVCELIELLKNKD 65 (82) Q Consensus 53 H~CaLi~lLen~~ 65 (82) .+--.|+||+|+. T Consensus 10 avrlfiewlkngg 22 (31) T 3c5t_B 10 AVRLFIEWLKNGG 22 (31) T ss_dssp HHHHHHHHHHTTG T ss_pred HHHHHHHHHHCCC T ss_conf 9999999998189 Done!