Query         gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 82
No_of_seqs    3 out of 5
Neff          1.7 
Searched_HMMs 33803
Date          Mon May 23 16:46:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780203.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1vls_A TAR, aspartate recepto  64.3     8.8 0.00026   20.4   3.8   49   19-70     68-116 (146)
  2 >2asr_A Aspartate receptor; ch  48.8      25 0.00073   17.8   5.1   48   20-70     66-113 (142)
  3 >1f6y_A 5-methyltetrahydrofola  36.8      38  0.0011   16.7   3.4   76    2-79    125-205 (262)
  4 >2lig_A Aspartate receptor; ch  25.6      59  0.0017   15.6   5.3   49   19-70     78-126 (164)
  5 >2ea9_A JW2626, hypothetical p  25.5      41  0.0012   16.5   2.0   26   11-36     46-71  (105)
  6 >3gyx_A Adenylylsulfate reduct  20.8      18 0.00052   18.6  -0.7   34   10-43     84-132 (157)
  7 >2inw_A Putative structural pr  18.1      85  0.0025   14.6   2.9   25   12-36     61-85  (133)
  8 >1uqr_A 3-dehydroquinate dehyd  17.9      86  0.0025   14.6   2.4   26   42-67    124-149 (154)
  9 >1gtz_A 3-dehydroquinate dehyd  16.7      78  0.0023   14.8   1.9   24   42-65    130-153 (156)
 10 >3c5t_B Exendin-4, exenatide;   16.0      95  0.0028   14.3   2.2   13   53-65     10-22  (31)

No 1  
>>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} (A:)
Probab=64.33  E-value=8.8  Score=20.43  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=37.2

Q ss_pred             HHHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             9999998310300125322478620022899999999999999718855015
Q gi|254780203|r   19 ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE   70 (82)
Q Consensus        19 kl~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~   70 (82)
                      +-...++..-...+.+.|..+++-   .|..|..-.-+|+.+|++++|++.-
T Consensus        68 ~~f~~y~~~p~~~~~~~l~~~l~~---~Y~~y~~~L~~l~~~l~~g~~~~f~  116 (146)
T 1vls_A           68 AHYANFKNMTPLPAMAEASANVDE---KYQRYQAALAELIQFLDNGNMDAYF  116 (146)
T ss_dssp             HHHHHHHHSCCCGGGHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             999998727789873367899999---9999999999999998869999997


No 2  
>>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} (A:)
Probab=48.76  E-value=25  Score=17.81  Aligned_cols=48  Identities=15%  Similarity=0.200  Sum_probs=32.3

Q ss_pred             HHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             999998310300125322478620022899999999999999718855015
Q gi|254780203|r   20 LIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE   70 (82)
Q Consensus        20 l~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~   70 (82)
                      -.+.|...-.+.+-+.|...++-   .|..|..-+-+++.+|+++++++.-
T Consensus        66 ~~~~f~~~p~~~~~~~l~~~l~~---~y~~~~~~L~~l~~aL~~~d~~~f~  113 (142)
T 2asr_A           66 HYKKFKSMAPLPEMVATSRNIDE---KYKNYYTALTELIDYLDYGNTGAYF  113 (142)
T ss_dssp             HHHHHHHSCCCGGGHHHHHHHHH---HHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99998707788753147899999---9999999999999998779999998


No 3  
>>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase; carbon dioxide fixation, cobalamin; 2.20A {Moorella thermoacetica atcc 39073} (A:)
Probab=36.77  E-value=38  Score=16.70  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHH-HCCH--HCCCCCCCHHHHCCHHH-HHHHHHHHHHHHHHHCCCC-CHHHHHHHHH
Q ss_conf             8300140189999997999999983-1030--01253224786200228-9999999999999971885-5015788765
Q gi|254780203|r    2 DDRKYRPSKEEVRDAFPELIKALEK-GLST--FDVEPLKNPVKSHGKGY-ESYISHVCELIELLKNKDF-DGVEIERKSY   76 (82)
Q Consensus         2 ~d~kYRPs~eevR~afPkl~K~~Ek-~ls~--y~VdPL~~Pv~i~~~g~-e~Y~~H~CaLi~lLen~~f-~~~~i~rk~~   76 (82)
                      ++.......+++...|-+++..+++ |+.+  .=+||++.|...+.... ..+  ..+..++.+..-.+ --+.+-||+|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iiiDP~i~~~~~~~~~~~~~~--~~i~~i~~~~~~g~pi~~g~Sn~sf  202 (262)
T 1f6y_A          125 NKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVL--KTLQQIKMLADPAPKTVLGLSNVSQ  202 (262)
T ss_dssp             CSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHHH--HHHHHHHTCCSSCCEEEEEGGGGGT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCHHHHHHHH--HHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             89998888999999999999999983998777998188763454226799999--9999999987079987998327758


Q ss_pred             HHH
Q ss_conf             322
Q gi|254780203|r   77 NLR   79 (82)
Q Consensus        77 n~r   79 (82)
                      .+.
T Consensus       203 ~~~  205 (262)
T 1f6y_A          203 NCQ  205 (262)
T ss_dssp             TCS
T ss_pred             CCC
T ss_conf             996


No 4  
>>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} (A:)
Probab=25.63  E-value=59  Score=15.56  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             HHHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             9999998310300125322478620022899999999999999718855015
Q gi|254780203|r   19 ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE   70 (82)
Q Consensus        19 kl~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~   70 (82)
                      +.++.+++....-.-.-|...++-   .|..|..-+-.++++|+++++++.-
T Consensus        78 ~~~~~y~~~~~~~~e~~l~~~~~~---~~~~y~~~l~~~~~~l~~gd~~~~~  126 (164)
T 2lig_A           78 AHYANFKNMTPLPAMAEASANVDE---KYQRYQAALAELIQFLDNGNMDAYF  126 (164)
T ss_dssp             HHHHHHHHSCCCGGGHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             999998707789860188999999---9999999999999998879999998


No 5  
>>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} (A:)
Probab=25.50  E-value=41  Score=16.48  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHCCCCC
Q ss_conf             99999979999999831030012532
Q gi|254780203|r   11 EEVRDAFPELIKALEKGLSTFDVEPL   36 (82)
Q Consensus        11 eevR~afPkl~K~~Ek~ls~y~VdPL   36 (82)
                      ...-.|||.+||-+|..|.+=..+|-
T Consensus        46 ~~Ld~aFP~~ikqlE~ml~sGeLnPr   71 (105)
T 2ea9_A           46 PKLDVVFPHFISQIESMLTTGELNPR   71 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999999999998645898857


No 6  
>>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} (A:275-431)
Probab=20.77  E-value=18  Score=18.65  Aligned_cols=34  Identities=15%  Similarity=0.085  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCC---------------HHCCCCCCCHHHHC
Q ss_conf             89999997999999983103---------------00125322478620
Q gi|254780203|r   10 KEEVRDAFPELIKALEKGLS---------------TFDVEPLKNPVKSH   43 (82)
Q Consensus        10 ~eevR~afPkl~K~~Ek~ls---------------~y~VdPL~~Pv~i~   43 (82)
                      .+.++..||.+.+.+++.+.               -+++||.++|++|.
T Consensus        84 ~~~~~~~~~~i~~~~~~~~~e~~~~~~p~~~~~~~~~giDp~~~pI~I~  132 (157)
T 3gyx_A           84 QTSFATMSPAQQKHLEAEAWEDFLDMCVGQANLWAATNCAPEERGSEIM  132 (157)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTTCCEEEE
T ss_pred             HHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             5642000345530230466787876668999999975998345888666


No 7  
>>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protein structure initiative; 1.50A {Shigella flexneri} (A:)
Probab=18.13  E-value=85  Score=14.64  Aligned_cols=25  Identities=36%  Similarity=0.527  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHCCHHCCCCC
Q ss_conf             9999979999999831030012532
Q gi|254780203|r   12 EVRDAFPELIKALEKGLSTFDVEPL   36 (82)
Q Consensus        12 evR~afPkl~K~~Ek~ls~y~VdPL   36 (82)
                      ..-.|||.+||-+|-.|..=..+|-
T Consensus        61 ~LdqaFP~~ikqlE~ml~sGeLnPr   85 (133)
T 2inw_A           61 HLDQAFPLLXKQLELXLTGGELNPR   85 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999999998633788912


No 8  
>>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} (A:)
Probab=17.86  E-value=86  Score=14.60  Aligned_cols=26  Identities=19%  Similarity=0.141  Sum_probs=21.7

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             20022899999999999999718855
Q gi|254780203|r   42 SHGKGYESYISHVCELIELLKNKDFD   67 (82)
Q Consensus        42 i~~~g~e~Y~~H~CaLi~lLen~~f~   67 (82)
                      |.|.|..||++-+-+|++.|...+..
T Consensus       124 I~G~G~~gY~lAl~al~~~l~~~~~g  149 (154)
T 1uqr_A          124 ICGLGAKGYDYALDFAISELQKIQLG  149 (154)
T ss_dssp             EESSTTHHHHHHHHHHHHHHHTC---
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             95598799999999999999876513


No 9  
>>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} (A:)
Probab=16.75  E-value=78  Score=14.84  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             200228999999999999997188
Q gi|254780203|r   42 SHGKGYESYISHVCELIELLKNKD   65 (82)
Q Consensus        42 i~~~g~e~Y~~H~CaLi~lLen~~   65 (82)
                      |.|.|..||.+-+-+|..+|+.+.
T Consensus       130 I~G~G~~gY~lAl~al~~~l~~~~  153 (156)
T 1gtz_A          130 VAGCGVQGYVFGVERIAALAGAGS  153 (156)
T ss_dssp             EESSTTHHHHHHHHHHHHHHC---
T ss_pred             EECCCHHHHHHHHHHHHHHHHCCC
T ss_conf             952885899999999999985464


No 10 
>>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain, G-protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} (B:)
Probab=16.03  E-value=95  Score=14.33  Aligned_cols=13  Identities=46%  Similarity=0.424  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999997188
Q gi|254780203|r   53 HVCELIELLKNKD   65 (82)
Q Consensus        53 H~CaLi~lLen~~   65 (82)
                      .+--.|+||+|+.
T Consensus        10 avrlfiewlkngg   22 (31)
T 3c5t_B           10 AVRLFIEWLKNGG   22 (31)
T ss_dssp             HHHHHHHHHHTTG
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999998189


Done!