Query gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 82
No_of_seqs 3 out of 5
Neff 1.7
Searched_HMMs 23785
Date Mon May 23 12:36:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780203.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vls_A TAR, aspartate receptor 42.8 13 0.00056 18.5 2.6 27 43-69 89-115 (146)
2 2asr_A Aspartate receptor; che 39.9 14 0.0006 18.3 2.4 27 43-69 86-112 (142)
3 2ea9_A JW2626, hypothetical pr 28.6 24 0.00099 17.0 2.0 25 12-36 47-71 (105)
4 2inw_A Putative structural pro 26.6 28 0.0012 16.6 2.0 25 12-36 61-85 (133)
5 2lig_A Aspartate receptor; che 24.6 43 0.0018 15.4 5.3 49 19-70 78-126 (164)
6 2e4g_A Tryptophan halogenase; 19.9 54 0.0023 14.9 2.7 39 37-79 373-411 (550)
7 2d4u_A Methyl-accepting chemot 18.6 58 0.0024 14.7 4.1 27 43-69 105-131 (176)
8 3lwz_A 3-dehydroquinate dehydr 18.3 57 0.0024 14.7 2.3 35 30-64 115-152 (153)
9 3ktb_A Arsenical resistance op 16.5 25 0.0011 16.8 0.1 27 49-80 27-53 (106)
10 3c5t_B Exendin-4, exenatide; l 16.0 67 0.0028 14.3 2.2 13 53-65 10-22 (31)
No 1
>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1vlt_A 1was_A 1wat_A 1jmw_A
Probab=42.81 E-value=13 Score=18.46 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 002289999999999999971885501
Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82)
Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82)
-.++|..|..-.-+||.+|+++++++.
T Consensus 89 l~~~Y~~~~~aL~el~~~L~~~~i~~f 115 (146)
T 1vls_A 89 VDEKYQRYQAALAELIQFLDNGNMDAY 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999999999887998999
No 2
>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} SCOP: a.24.2.1
Probab=39.91 E-value=14 Score=18.28 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 002289999999999999971885501
Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82)
Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82)
-.++|..|..-.-+||.+|+++++++.
T Consensus 86 l~~~Y~~y~~aL~el~~~L~~~~~~~f 112 (142)
T 2asr_A 86 IDEKYKNYYTALTELIDYLDYGNTGAY 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999999999877998999
No 3
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=28.56 E-value=24 Score=17.01 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCCC
Q ss_conf 9999979999999831030012532
Q gi|254780203|r 12 EVRDAFPELIKALEKGLSTFDVEPL 36 (82)
Q Consensus 12 evR~afPkl~K~~Ek~ls~y~VdPL 36 (82)
..-.|||.+||-+|..|++=..+|-
T Consensus 47 ~Ld~aFP~~ikqlE~ml~sGeL~pr 71 (105)
T 2ea9_A 47 KLDVVFPHFISQIESMLTTGELNPR 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8998999999999998645998857
No 4
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=26.60 E-value=28 Score=16.60 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCCC
Q ss_conf 9999979999999831030012532
Q gi|254780203|r 12 EVRDAFPELIKALEKGLSTFDVEPL 36 (82)
Q Consensus 12 evR~afPkl~K~~Ek~ls~y~VdPL 36 (82)
..-.|||.+||-+|..|+.=..+|-
T Consensus 61 ~Ld~aFP~~ikqLE~ml~sGELnPr 85 (133)
T 2inw_A 61 HLDQAFPLLMKQLELMLTGGELNPR 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8998999999999998633788902
No 5
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=24.62 E-value=43 Score=15.45 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9999998310300125322478620022899999999999999718855015
Q gi|254780203|r 19 ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE 70 (82)
Q Consensus 19 kl~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~ 70 (82)
+-.+.|...-..-+++++...+ .+.|..|..-.-++|.+|+++++++.-
T Consensus 78 ~~f~~f~~~p~~~~~~~~~~~l---~~~y~~~~~aL~~l~~~L~~~d~~~f~ 126 (164)
T 2lig_A 78 AHYANFKNMTPLPAMAEASANV---DEKYQRYQAALAELIQFLDNGNMDAYF 126 (164)
T ss_dssp HHHHHHHHSCCCGGGHHHHHHH---HHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999987488898602789999---999999999999999998879999997
No 6
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=19.90 E-value=54 Score=14.88 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2478620022899999999999999718855015788765322
Q gi|254780203|r 37 KNPVKSHGKGYESYISHVCELIELLKNKDFDGVEIERKSYNLR 79 (82)
Q Consensus 37 ~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~i~rk~~n~r 79 (82)
++|.++.|-.+ ...-+-.|++.|.+++++. +.++.||++
T Consensus 373 iEPLeStGi~~--~~~~~~~l~~~l~~~~~~~--~~~~~yN~~ 411 (550)
T 2e4g_A 373 VEPLESTGIYF--VYAALYQLVKHFPDKSLNP--VLTARFNRE 411 (550)
T ss_dssp CCGGGSCHHHH--HHHHHHHHHHTCCCTTCCH--HHHHHHHHH
T ss_pred CCCCCCCCHHH--HHHHHHHHHHHCCCCCCCH--HHHHHHHHH
T ss_conf 58644324899--9999999999767678657--889999999
No 7
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli}
Probab=18.56 E-value=58 Score=14.70 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 002289999999999999971885501
Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82)
Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82)
-.+.|..|..-+-.+|..|++++|++.
T Consensus 105 l~~~y~~y~~~L~~l~~aL~~gd~~~f 131 (176)
T 2d4u_A 105 IKRNYDIYHNALAELIQLLGAGKINEF 131 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999999999887999999
No 8
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=18.32 E-value=57 Score=14.73 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHCCCCCCCHHH---HCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 001253224786---20022899999999999999718
Q gi|254780203|r 30 TFDVEPLKNPVK---SHGKGYESYISHVCELIELLKNK 64 (82)
Q Consensus 30 ~y~VdPL~~Pv~---i~~~g~e~Y~~H~CaLi~lLen~ 64 (82)
.|.-..++.|+- |-|.|..+|+.-+-+|+++|++.
T Consensus 115 ~fR~~S~is~~~~g~I~G~G~~gY~lAl~~l~~~l~~~ 152 (153)
T 3lwz_A 115 PFRHHSYLSDIAVGVICGLGADGYNFALQAAVNRLSKS 152 (153)
T ss_dssp GGGGCCSSGGGSSEEEESSTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf 64545533741449994698789999999999998645
No 9
>3ktb_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, structural genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482}
Probab=16.52 E-value=25 Score=16.85 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999999997188550157887653221
Q gi|254780203|r 49 SYISHVCELIELLKNKDFDGVEIERKSYNLRK 80 (82)
Q Consensus 49 ~Y~~H~CaLi~lLen~~f~~~~i~rk~~n~r~ 80 (82)
+--.-+-+.++||++. |++|+| ||+..
T Consensus 27 ~~L~~~aa~~~~lk~~---gv~v~R--~nL~~ 53 (106)
T 3ktb_A 27 PELMRIAVVIESLKKQ---GIIVTR--HNLRD 53 (106)
T ss_dssp HHHHHHHHHHHHHHHT---TCCCEE--EETTT
T ss_pred HHHHHHHHHHHHHHHC---CCEEEE--ECCCC
T ss_conf 8999999999999967---947997--54335
No 10
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain, G-protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=16.03 E-value=67 Score=14.33 Aligned_cols=13 Identities=46% Similarity=0.424 Sum_probs=9.5
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999997188
Q gi|254780203|r 53 HVCELIELLKNKD 65 (82)
Q Consensus 53 H~CaLi~lLen~~ 65 (82)
.+--.|+||+|+.
T Consensus 10 avrlfiewlkngg 22 (31)
T 3c5t_B 10 AVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHTTG
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998189
Done!