Query gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 82 No_of_seqs 3 out of 5 Neff 1.7 Searched_HMMs 23785 Date Mon May 23 12:36:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780203.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vls_A TAR, aspartate receptor 42.8 13 0.00056 18.5 2.6 27 43-69 89-115 (146) 2 2asr_A Aspartate receptor; che 39.9 14 0.0006 18.3 2.4 27 43-69 86-112 (142) 3 2ea9_A JW2626, hypothetical pr 28.6 24 0.00099 17.0 2.0 25 12-36 47-71 (105) 4 2inw_A Putative structural pro 26.6 28 0.0012 16.6 2.0 25 12-36 61-85 (133) 5 2lig_A Aspartate receptor; che 24.6 43 0.0018 15.4 5.3 49 19-70 78-126 (164) 6 2e4g_A Tryptophan halogenase; 19.9 54 0.0023 14.9 2.7 39 37-79 373-411 (550) 7 2d4u_A Methyl-accepting chemot 18.6 58 0.0024 14.7 4.1 27 43-69 105-131 (176) 8 3lwz_A 3-dehydroquinate dehydr 18.3 57 0.0024 14.7 2.3 35 30-64 115-152 (153) 9 3ktb_A Arsenical resistance op 16.5 25 0.0011 16.8 0.1 27 49-80 27-53 (106) 10 3c5t_B Exendin-4, exenatide; l 16.0 67 0.0028 14.3 2.2 13 53-65 10-22 (31) No 1 >1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1vlt_A 1was_A 1wat_A 1jmw_A Probab=42.81 E-value=13 Score=18.46 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 002289999999999999971885501 Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82) Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82) -.++|..|..-.-+||.+|+++++++. T Consensus 89 l~~~Y~~~~~aL~el~~~L~~~~i~~f 115 (146) T 1vls_A 89 VDEKYQRYQAALAELIQFLDNGNMDAY 115 (146) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 999999999999999999887998999 No 2 >2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} SCOP: a.24.2.1 Probab=39.91 E-value=14 Score=18.28 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 002289999999999999971885501 Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82) Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82) -.++|..|..-.-+||.+|+++++++. T Consensus 86 l~~~Y~~y~~aL~el~~~L~~~~~~~f 112 (142) T 2asr_A 86 IDEKYKNYYTALTELIDYLDYGNTGAY 112 (142) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 999999999999999999877998999 No 3 >2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A Probab=28.56 E-value=24 Score=17.01 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCCC Q ss_conf 9999979999999831030012532 Q gi|254780203|r 12 EVRDAFPELIKALEKGLSTFDVEPL 36 (82) Q Consensus 12 evR~afPkl~K~~Ek~ls~y~VdPL 36 (82) ..-.|||.+||-+|..|++=..+|- T Consensus 47 ~Ld~aFP~~ikqlE~ml~sGeL~pr 71 (105) T 2ea9_A 47 KLDVVFPHFISQIESMLTTGELNPR 71 (105) T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 8998999999999998645998857 No 4 >2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A Probab=26.60 E-value=28 Score=16.60 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCCC Q ss_conf 9999979999999831030012532 Q gi|254780203|r 12 EVRDAFPELIKALEKGLSTFDVEPL 36 (82) Q Consensus 12 evR~afPkl~K~~Ek~ls~y~VdPL 36 (82) ..-.|||.+||-+|..|+.=..+|- T Consensus 61 ~Ld~aFP~~ikqLE~ml~sGELnPr 85 (133) T 2inw_A 61 HLDQAFPLLMKQLELMLTGGELNPR 85 (133) T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 8998999999999998633788902 No 5 >2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A* Probab=24.62 E-value=43 Score=15.45 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=31.6 Q ss_pred HHHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 9999998310300125322478620022899999999999999718855015 Q gi|254780203|r 19 ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVE 70 (82) Q Consensus 19 kl~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~ 70 (82) +-.+.|...-..-+++++...+ .+.|..|..-.-++|.+|+++++++.- T Consensus 78 ~~f~~f~~~p~~~~~~~~~~~l---~~~y~~~~~aL~~l~~~L~~~d~~~f~ 126 (164) T 2lig_A 78 AHYANFKNMTPLPAMAEASANV---DEKYQRYQAALAELIQFLDNGNMDAYF 126 (164) T ss_dssp HHHHHHHHSCCCGGGHHHHHHH---HHHHHHHHHHHHHHHHHHHTTCHHHHH T ss_pred HHHHHHHCCCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 9999987488898602789999---999999999999999998879999997 No 6 >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Probab=19.90 E-value=54 Score=14.88 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=22.7 Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 2478620022899999999999999718855015788765322 Q gi|254780203|r 37 KNPVKSHGKGYESYISHVCELIELLKNKDFDGVEIERKSYNLR 79 (82) Q Consensus 37 ~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~~~i~rk~~n~r 79 (82) ++|.++.|-.+ ...-+-.|++.|.+++++. +.++.||++ T Consensus 373 iEPLeStGi~~--~~~~~~~l~~~l~~~~~~~--~~~~~yN~~ 411 (550) T 2e4g_A 373 VEPLESTGIYF--VYAALYQLVKHFPDKSLNP--VLTARFNRE 411 (550) T ss_dssp CCGGGSCHHHH--HHHHHHHHHHTCCCTTCCH--HHHHHHHHH T ss_pred CCCCCCCCHHH--HHHHHHHHHHHCCCCCCCH--HHHHHHHHH T ss_conf 58644324899--9999999999767678657--889999999 No 7 >2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} Probab=18.56 E-value=58 Score=14.70 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 002289999999999999971885501 Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82) Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82) -.+.|..|..-+-.+|..|++++|++. T Consensus 105 l~~~y~~y~~~L~~l~~aL~~gd~~~f 131 (176) T 2d4u_A 105 IKRNYDIYHNALAELIQLLGAGKINEF 131 (176) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 999999999999999999887999999 No 8 >3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis} Probab=18.32 E-value=57 Score=14.73 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=24.4 Q ss_pred HHCCCCCCCHHH---HCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 001253224786---20022899999999999999718 Q gi|254780203|r 30 TFDVEPLKNPVK---SHGKGYESYISHVCELIELLKNK 64 (82) Q Consensus 30 ~y~VdPL~~Pv~---i~~~g~e~Y~~H~CaLi~lLen~ 64 (82) .|.-..++.|+- |-|.|..+|+.-+-+|+++|++. T Consensus 115 ~fR~~S~is~~~~g~I~G~G~~gY~lAl~~l~~~l~~~ 152 (153) T 3lwz_A 115 PFRHHSYLSDIAVGVICGLGADGYNFALQAAVNRLSKS 152 (153) T ss_dssp GGGGCCSSGGGSSEEEESSTTHHHHHHHHHHHHHHHHC T ss_pred CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC T ss_conf 64545533741449994698789999999999998645 No 9 >3ktb_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, structural genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482} Probab=16.52 E-value=25 Score=16.85 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 99999999999997188550157887653221 Q gi|254780203|r 49 SYISHVCELIELLKNKDFDGVEIERKSYNLRK 80 (82) Q Consensus 49 ~Y~~H~CaLi~lLen~~f~~~~i~rk~~n~r~ 80 (82) +--.-+-+.++||++. |++|+| ||+.. T Consensus 27 ~~L~~~aa~~~~lk~~---gv~v~R--~nL~~ 53 (106) T 3ktb_A 27 PELMRIAVVIESLKKQ---GIIVTR--HNLRD 53 (106) T ss_dssp HHHHHHHHHHHHHHHT---TCCCEE--EETTT T ss_pred HHHHHHHHHHHHHHHC---CCEEEE--ECCCC T ss_conf 8999999999999967---947997--54335 No 10 >3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain, G-protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B* Probab=16.03 E-value=67 Score=14.33 Aligned_cols=13 Identities=46% Similarity=0.424 Sum_probs=9.5 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999999997188 Q gi|254780203|r 53 HVCELIELLKNKD 65 (82) Q Consensus 53 H~CaLi~lLen~~ 65 (82) .+--.|+||+|+. T Consensus 10 avrlfiewlkngg 22 (31) T 3c5t_B 10 AVRLFIEWLKNGG 22 (31) T ss_dssp HHHHHHHHHHTTG T ss_pred HHHHHHHHHHCCC T ss_conf 9999999998189 Done!