BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780203|ref|YP_003064616.1| hypothetical protein
CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 82

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60
          MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL
Sbjct: 1  MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60

Query: 61 LKNKDFDGVEIERKSYNLRKNT 82
          LKNKDFDGVEIERKSYNLRKNT
Sbjct: 61 LKNKDFDGVEIERKSYNLRKNT 82


>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 101

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 2  DDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIE 59
          +  +YRP ++EVR+AFP+++K++EK L  + V+PL  PV+   +G   E Y  H+C LI+
Sbjct: 12 EGNQYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIK 70

Query: 60 LLKNKD 65
          LL+N+ 
Sbjct: 71 LLENRS 76


>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 3   DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61
           D KYRPS E +R   P +L+K  E  +S +      +P+      +  Y  H C L+  L
Sbjct: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-----VDPLTPRDISFTQYEKHACALVNWL 231

Query: 62  KNKDFDGVEIERKSYNLRKN 81
           +   F+ + I RK++N R  
Sbjct: 232 EKGKFNEMSIARKAFNRRSQ 251


>gi|195953045|ref|YP_002121335.1| glutamyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|229470619|sp|B4U896|SYE_HYDS0 RecName: Full=Glutamyl-tRNA synthetase; AltName:
           Full=Glutamate--tRNA ligase; Short=GluRS
 gi|195932657|gb|ACG57357.1| glutamyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 464

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 3   DRKYRPSKEEVRDAFPE------LIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCE 56
           D+ Y  +   +R+  PE      L+  LEK   T D+E LK  VK+  K Y +Y+  V +
Sbjct: 306 DKLYWLNGVYIREILPEDRLLEDLLSFLEKAYGTVDIEYLKKIVKATRKEYNTYLEAVEK 365

Query: 57  LIELLKNKDFDGV------EIERKSYNLRKN 81
           L    K K+ D V      +I+RK + L K 
Sbjct: 366 LRPFFKEKELDEVAKEELSKIDRKVFELLKQ 396


>gi|117926863|ref|YP_867480.1| hypothetical protein Mmc1_3589 [Magnetococcus sp. MC-1]
 gi|117610619|gb|ABK46074.1| Tetratricopeptide TPR_2 repeat protein [Magnetococcus sp. MC-1]
          Length = 235

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 6   YRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKD 65
           YR   ++  D + + ++AL+K       E LK     HG+     +SH+ E   L K  D
Sbjct: 56  YRAQDQDASDRYIQALEALDKDQLKVAAEALKGLQTKHGEHGYGLLSHLSEAQMLAKQGD 115

Query: 66  FDGV 69
           FDG 
Sbjct: 116 FDGA 119


>gi|118626591|emb|CAL34031.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523750|gb|ADO33717.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
          EL+K L+ G+STFD++ +      KN V S  KGY+ +  ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68


>gi|308523732|gb|ADO33705.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523738|gb|ADO33709.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523741|gb|ADO33711.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
          EL+K L+ G+STFD++ +      KN V S  KGY+ +  ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68


>gi|308523723|gb|ADO33699.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523726|gb|ADO33701.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523729|gb|ADO33703.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523735|gb|ADO33707.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523744|gb|ADO33713.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
 gi|308523747|gb|ADO33715.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
          EL+K L+ G+STFD++ +      KN V S  KGY+ +  ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68


>gi|118626588|emb|CAL34029.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
          EL+K L+ G+STFD++ +      KN V S  KGY+ +  ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68


>gi|308524928|gb|ADO33792.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
          Length = 183

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
          EL+K L+ G+STFD++ +      KN V S  KGY+ +  ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68


>gi|118626579|emb|CAL34023.1| methionine aminopeptidase [Candidatus Phytoplasma vitis]
          Length = 188

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
          EL+K L+ G+STFD++ +      KN V S  KGY+ +  ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNDVISAFKGYQGFGGYIC 68


>gi|118626564|emb|CAL34013.1| methionine aminopeptidase [Candidatus Phytoplasma vitis]
          Length = 188

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
          EL+K L+ G+STFD++ +      KN V S  KGY+ +  ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNDVISAFKGYQGFGGYIC 68


Searching..................................................done


Results from round 2




>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 82

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60
          MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL
Sbjct: 1  MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60

Query: 61 LKNKDFDGVEIERKSYNLRKNT 82
          LKNKDFDGVEIERKSYNLRKNT
Sbjct: 61 LKNKDFDGVEIERKSYNLRKNT 82


>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 101

 Score = 98.9 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 2  DDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIE 59
          +  +YRP ++EVR+AFP+++K++EK L  + V+PL  PV+   +G   E Y  H+C LI+
Sbjct: 12 EGNQYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIK 70

Query: 60 LLKNKD 65
          LL+N+ 
Sbjct: 71 LLENRS 76


>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 3   DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61
           D KYRPS E +R   P +L+K  E  +S + V+PL  P       +  Y  H C L+  L
Sbjct: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-VDPL-TPRDI---SFTQYEKHACALVNWL 231

Query: 62  KNKDFDGVEIERKSYNLR 79
           +   F+ + I RK++N R
Sbjct: 232 EKGKFNEMSIARKAFNRR 249


>gi|66820877|ref|XP_643991.1| hypothetical protein DDB_G0274829 [Dictyostelium discoideum AX4]
 gi|60472354|gb|EAL70307.1| hypothetical protein DDB_G0274829 [Dictyostelium discoideum AX4]
          Length = 414

 Score = 34.2 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 13  VRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYES------YISHVCELIELLKNKDF 66
           ++D F E  K LE  +  F+++P+    + H +G  S      +  H   +I+LLKN+  
Sbjct: 174 IKDCFIEHHKILE-SIEQFNLKPVIEWCRLHREGLSSIDSSLEFKLHRLHIIQLLKNQKS 232

Query: 67  D 67
           D
Sbjct: 233 D 233


>gi|304397245|ref|ZP_07379124.1| peptidase T [Pantoea sp. aB]
 gi|304355394|gb|EFM19762.1| peptidase T [Pantoea sp. aB]
          Length = 409

 Score = 34.2 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 4   RKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKG 46
             YR  +E+V + FP +I    + +   D+EP+  P++    G
Sbjct: 317 NSYRNMREKV-EPFPHIIDLALQAMRDCDIEPVVKPIRGGTDG 358


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.309    0.137    0.378 

Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,550,377,160
Number of Sequences: 13984884
Number of extensions: 55832342
Number of successful extensions: 117110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 117089
Number of HSP's gapped (non-prelim): 44
length of query: 82
length of database: 4,792,584,752
effective HSP length: 53
effective length of query: 29
effective length of database: 4,051,385,900
effective search space: 117490191100
effective search space used: 117490191100
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 75 (33.5 bits)