RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780203|ref|YP_003064616.1| hypothetical protein
CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)



>gnl|CDD|114849 pfam06154, YagB_YeeU_YfjZ, YagB/YeeU/YfjZ family.  This family of
          proteins includes three proteins from E. coli YagB,
          YeeU and YfjZ. The function of these proteins is
          unknown. They are about 120 amino acids in length.
          Length = 104

 Score = 27.7 bits (62), Expect = 0.70
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 15 DAFPELIKALEKGLSTFDVEP 35
          +AFP  IK LE  L + ++ P
Sbjct: 49 EAFPHFIKQLELMLLSGELNP 69


>gnl|CDD|182323 PRK10236, PRK10236, hypothetical protein; Provisional.
          Length = 237

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 28  LSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVEIERK 74
           L  F  + + N ++ HGK Y + +  V + ++L  +K+    EIE++
Sbjct: 70  LQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQ 116


>gnl|CDD|180340 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
          Length = 1244

 Score = 26.0 bits (58), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 14  RDAFPELIKALEKG---LSTFDVEPLK-NPVKSH 43
           RDAFP +I   +     ++  D EP + NPV++H
Sbjct: 954 RDAFPNVIALFDDAVRAVAALD-EPDEDNPVRAH 986


>gnl|CDD|167230 PRK01433, hscA, chaperone protein HscA; Provisional.
          Length = 595

 Score = 25.2 bits (55), Expect = 3.6
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 47  YESYISHVCELIELLKNKDFDGVEIERKSYNLRKN 81
           YE  IS+    IE+  N   D  EI+    N  KN
Sbjct: 464 YEK-ISNTSHAIEVKPNHGIDKTEIDIMLENAYKN 497


>gnl|CDD|179692 PRK03979, PRK03979, ADP-specific phosphofructokinase; Provisional.
          Length = 463

 Score = 25.3 bits (56), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 42  SHGKGYESYISHVCELIELLKNKDFD 67
           S GK  E Y+    E I+LLK K+ D
Sbjct: 239 SDGKTAEYYLKRAKEDIKLLKKKNKD 264


>gnl|CDD|162406 TIGR01536, asn_synth_AEB, asparagine synthase
           (glutamine-hydrolyzing).  This model describes the
           glutamine-hydrolysing asparagine synthase. A poorly
           conserved C-terminal extension was removed from the
           model. Bacterial members of the family tend to have a
           long, poorly conserved insert lacking from archaeal and
           eukaryotic sequences. Multiple isozymes have been
           demonstrated, such as in Bacillus subtilis. Long-branch
           members of the phylogenetic tree (which typically were
           also second or third candidate members from their
           genomes) were removed from the seed alignment and score
           below trusted cutoff.
          Length = 467

 Score = 25.4 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 9   SKEEVRDAFPELIKALEKGLSTFDVEPL 36
           S EE  DA PE+I  LE   +     PL
Sbjct: 318 SVEEGLDALPEVIYHLEDPTTIRASIPL 345


>gnl|CDD|147852 pfam05925, IpgD, Enterobacterial virulence protein IpgD.  This
           family consists of several enterobacterial IpgD like
           virulence factor proteins. In the Gram-negative pathogen
           Shigella flexneri, the virulence factor IpgD is
           translocated directly into eukaryotic cells and acts as
           a potent inositol 4-phosphatase that specifically
           dephosphorylates phosphatidylinositol 4,5-bisphosphate
           [PtdIns(4,5)P(2)] into phosphatidylinositol
           5-monophosphate [PtdIns(5)P] that then accumulates.
           Transformation of PtdIns(4,5)P(2) into PtdIns(5)P by
           IpgD is responsible for dramatic morphological changes
           of the host cell, leading to a decrease in membrane
           tether force associated with membrane blebbing and actin
           filament remodelling.
          Length = 569

 Score = 25.0 bits (54), Expect = 4.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 8   PSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY 47
            +KE  R A      A +K L+  + EP+K  +  +G  Y
Sbjct: 154 KAKEAHRFAASAFKDAFDKQLNNKNWEPIKKNINHNGHHY 193


>gnl|CDD|181851 PRK09431, asnB, asparagine synthetase B; Provisional.
          Length = 554

 Score = 25.3 bits (56), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)

Query: 10  KEEVRDAFPELIKALEKGLSTFDV 33
            +E  DA  ++I  LE    T+DV
Sbjct: 302 VQEGLDALRDVIYHLE----TYDV 321


>gnl|CDD|183436 PRK12321, cobN, cobaltochelatase subunit CobN; Reviewed.
          Length = 1100

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 14  RDAFPELIKALEKG---LSTFDVEPLKNP 39
           RD FP LI   ++    ++  +     NP
Sbjct: 834 RDVFPALIALFDQAARAVAAREEADEDNP 862


>gnl|CDD|148092 pfam06277, EutA, Ethanolamine utilisation protein EutA.  This
           family consists of several bacterial EutA ethanolamine
           utilisation proteins. The EutA protein is thought to
           protect the lyase (EutBC) from inhibition by CNB12.
          Length = 473

 Score = 24.5 bits (54), Expect = 5.8
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 7   RPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPV--KSHGKGYESY--ISHVCELI 58
           +PS ++       L +A+ + L+ FD+E    PV     G    S+  +  + E I
Sbjct: 342 KPSLDDEEQGNEPLAEAIRQALAWFDLEGEVQPVALAFPGLKNPSFQAVQALAEAI 397


>gnl|CDD|180495 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
           Reviewed.
          Length = 543

 Score = 24.6 bits (54), Expect = 5.8
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 32  DVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVEIERKSYNLRK 80
            VE     +KS  K     I+   +LI+ LK   +D V I R    L+K
Sbjct: 414 SVEEDIARIKSEIKFLNGSIN-PYDLIDELKKTMWDYVSIVRNEKGLKK 461


>gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate
          N-succinyltransferase; Provisional.
          Length = 272

 Score = 24.8 bits (55), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 10 KEEVRDAFPELIKALEKG 27
            EVR+A  E+I  L+ G
Sbjct: 24 DTEVREAVEEVIDLLDSG 41


>gnl|CDD|128884 smart00636, Glyco_18, Glycosyl hydrolase family 18. 
          Length = 334

 Score = 24.6 bits (54), Expect = 6.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 58  IELLKNKDFDGVEI 71
           +  LK   FDG++I
Sbjct: 100 VSFLKKYGFDGIDI 113


>gnl|CDD|177379 PHA02544, 44, clamp loader, small subunit; Provisional.
          Length = 316

 Score = 24.6 bits (54), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 52  SHVCELIELLKNKDFDGV 69
           S + +++E LK KDF  V
Sbjct: 230 SDIDDVVEALKAKDFKAV 247


>gnl|CDD|131310 TIGR02257, cobalto_cobN, cobaltochelatase, CobN subunit. 
          Length = 1122

 Score = 23.9 bits (52), Expect = 9.4
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 14  RDAFPELIKALEKGL---STFDVEPLKNPVKSHGKGYESYISHV 54
           RDAFP LI  ++K +   +  D     NP+ +  +        +
Sbjct: 848 RDAFPNLIALVDKAVQAVAQLDEPDELNPLAARTRAEGRASPRI 891


>gnl|CDD|132040 TIGR02995, ectoine_ehuB, ectoine/hydroxyectoine ABC transporter
           solute-binding protein.  Members of this family are the
           extracellular solute-binding proteins of ABC
           transporters that closely resemble amino acid
           transporters. The member from Sinorhizobium meliloti is
           involved in ectoine uptake, both for osmoprotection and
           for catabolism. All other members of the seed alignment
           are found associated with ectoine catabolic genes.
          Length = 275

 Score = 23.7 bits (51), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 6   YRPSKEEVRDAF-PELIKALEKG 27
           +RP  +E+RDAF  EL K  E G
Sbjct: 228 FRPEDKELRDAFNVELAKLKESG 250


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,372,353
Number of extensions: 72881
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 37
Length of query: 82
Length of database: 5,994,473
Length adjustment: 51
Effective length of query: 31
Effective length of database: 4,892,465
Effective search space: 151666415
Effective search space used: 151666415
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.3 bits)