RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780203|ref|YP_003064616.1| hypothetical protein
CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)



>d2ea9a1 d.110.8.1 (A:8-110) Hypothetical protein YfjZ
          {Escherichia coli [TaxId: 562]}
          Length = 103

 Score = 28.5 bits (64), Expect = 0.16
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)

Query: 9  SKEEVRD---AFPELIKALEKGLSTFDVEP 35
          S  E       FP  I  +E  L+T ++ P
Sbjct: 41 SDAECPKLDVVFPHFISQIESMLTTGELNP 70


>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon
          Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 320

 Score = 27.5 bits (60), Expect = 0.29
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 9  SKEEVRDA--FPELIKALEKGLSTFDVEPLKNPVKSH 43
          ++EEV       E + A+E+    + +   + P K +
Sbjct: 7  TQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVY 43


>d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella
          flexneri [TaxId: 623]}
          Length = 117

 Score = 27.4 bits (61), Expect = 0.30
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 9  SKEEVRD---AFPELIKALEKGLSTFDVEP 35
          S  +      AFP L+K LE  L+  ++ P
Sbjct: 52 SDVDAYHLDQAFPLLMKQLELMLTGGELNP 81


>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA
          N-terminal domain {Streptococcus equisimilis [TaxId:
          119602]}
          Length = 192

 Score = 24.4 bits (52), Expect = 3.1
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 19 ELIKALEKGLSTFDVEPLKNP----VKSHG----KGYESYISHVCELIELLKNKDFD 67
          E++    K ++  D   +K        +H     K  E YI H  ++  +L +   D
Sbjct: 7  EVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLD 63


>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
          {Lingulodinium polyedrum [TaxId: 160621]}
          Length = 351

 Score = 23.7 bits (51), Expect = 3.9
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 30 TFDVEPLKNPVKSHGKGYESYISHVCELIEL-LKNKD 65
           F  + L  P++  GK +ES   ++ E  EL  KN  
Sbjct: 35 EFHEDGLHKPMEVGGKKFESGFHYLLECHELGGKNAS 71


>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate
           synthase {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 23.5 bits (51), Expect = 4.6
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 11/81 (13%)

Query: 6   YRPSKEEVRDAF-----------PELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHV 54
           Y     +   AF            + I A E            N +   G   +    + 
Sbjct: 44  YHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIGKYY 103

Query: 55  CELIELLKNKDFDGVEIERKS 75
            + IEL   +  D V+  +++
Sbjct: 104 ADTIELSDAEPVDVVQALKEA 124


>d3tdta_ b.81.1.2 (A:)
          Tetrahydrodipicolinate-N-succinlytransferase,
          THDP-succinlytransferase, DapD {Mycobacterium bovis
          [TaxId: 1765]}
          Length = 274

 Score = 23.3 bits (50), Expect = 5.9
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 9  SKEEVRDAFPELIKALEKG 27
               R+A  ++I  L+ G
Sbjct: 23 VDTVTREAVNQVIGLLDSG 41


>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
           {Escherichia coli [TaxId: 562]}
          Length = 162

 Score = 22.9 bits (49), Expect = 6.8
 Identities = 4/25 (16%), Positives = 7/25 (28%)

Query: 11  EEVRDAFPELIKALEKGLSTFDVEP 35
             V       ++ +   L    VE 
Sbjct: 132 PTVEAMIEPALEQVLAALRESGVEA 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 320,161
Number of extensions: 13334
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 13
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)