Query gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 180 No_of_seqs 2 out of 4 Neff 1.1 Searched_HMMs 13730 Date Mon May 23 11:09:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780204.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2pila_ d.24.1.1 (A:) Pilin Gc 71.3 3.1 0.00022 19.2 5.1 21 89-109 5-25 (158) 2 d2cupa3 g.39.1.3 (A:8-34) Four 31.3 3.9 0.00029 18.5 -0.4 11 148-158 15-25 (27) 3 d1j2oa1 g.39.1.3 (A:1-30) Rhom 25.3 7.4 0.00054 16.9 0.1 10 149-158 20-29 (30) 4 d1rutx1 g.39.1.3 (X:19-48) LIM 17.5 13 0.00093 15.4 -0.0 10 149-158 19-28 (30) 5 d1gsoa1 b.84.2.1 (A:328-426) G 12.2 36 0.0026 12.6 1.1 36 128-166 61-96 (99) 6 d1vr8a1 d.312.1.1 (A:25-154) H 8.8 50 0.0037 11.7 1.7 18 39-56 56-73 (130) 7 d1knza_ e.34.1.1 (A:) NSP3 hom 8.0 30 0.0022 13.1 -0.5 13 151-163 77-89 (157) 8 d2ho2a1 b.72.1.1 (A:253-285) A 5.1 70 0.0051 10.8 0.1 14 154-167 18-31 (33) 9 d1t0hb_ c.37.1.1 (B:) Guanylat 4.7 81 0.0059 10.4 0.2 17 140-156 185-202 (219) 10 d2di0a1 a.5.2.4 (A:8-70) Activ 4.6 84 0.0061 10.3 0.5 8 145-152 26-33 (63) No 1 >d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]} Probab=71.34 E-value=3.1 Score=19.21 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHCCHHHH Q ss_conf 799999999999972332176 Q gi|254780204|r 89 ACLVVTAILAILLSIAIPTIE 109 (180) Q Consensus 89 aclvvtailaillsiaiptiE 109 (180) ..+||.+|++||..|++|... T Consensus 5 ELlVViaIIgILaaia~P~~~ 25 (158) T d2pila_ 5 ELMIVIAIVGILAAVALPAYQ 25 (158) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999 No 2 >d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=31.28 E-value=3.9 Score=18.55 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=8.4 Q ss_pred HHCCCHHCCCC Q ss_conf 60520000155 Q gi|254780204|r 148 LEHPNRYWHTD 158 (180) Q Consensus 148 L~~~~RYwhtd 158 (180) |.+-|||||.+ T Consensus 15 ~h~knr~wh~~ 25 (27) T d2cupa3 15 VHYKNRFWHDT 25 (27) T ss_dssp EEETTEEEETT T ss_pred HHCCCCCCCCC T ss_conf 54222221345 No 3 >d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]} Probab=25.32 E-value=7.4 Score=16.87 Aligned_cols=10 Identities=40% Similarity=1.136 Sum_probs=7.2 Q ss_pred HCCCHHCCCC Q ss_conf 0520000155 Q gi|254780204|r 149 EHPNRYWHTD 158 (180) Q Consensus 149 ~~~~RYwhtd 158 (180) .--||+||.+ T Consensus 20 ~a~Dr~WH~~ 29 (30) T d1j2oa1 20 KAIDQYWHED 29 (30) T ss_dssp ECSSSEECTT T ss_pred HHHHHHHHCC T ss_conf 9888777038 No 4 >d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} Probab=17.46 E-value=13 Score=15.41 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=6.9 Q ss_pred HCCCHHCCCC Q ss_conf 0520000155 Q gi|254780204|r 149 EHPNRYWHTD 158 (180) Q Consensus 149 ~~~~RYwhtd 158 (180) .--||+||.+ T Consensus 19 ~v~dr~WH~~ 28 (30) T d1rutx1 19 YAMDSYWHSR 28 (30) T ss_dssp EETTEEECGG T ss_pred CCCHHHHHHH T ss_conf 0151105341 No 5 >d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]} Probab=12.19 E-value=36 Score=12.61 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHH Q ss_conf 853555889999999898986052000015555320121 Q gi|254780204|r 128 KAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRV 166 (180) Q Consensus 128 K~KE~~~~E~L~q~sE~~ACL~~~~RYwhtdsasigfrv 166 (180) -+..++++|..-++-+.+..+.-++.|+.+| ||+|. T Consensus 61 ~~~g~tl~~A~~~aY~~i~~I~~~g~~yR~D---IG~ra 96 (99) T d1gsoa1 61 TALGHTVAEAQKRAYALMTDIHWDDCFCRKD---IGWRA 96 (99) T ss_dssp EEEESSHHHHHHHHHHHTTTCBCTTEECCSC---TTHHH T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCCCC---HHHHH T ss_conf 9856999999999999997267999995650---53587 No 6 >d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622 {Thermotoga maritima [TaxId: 2336]} Probab=8.76 E-value=50 Score=11.72 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.3 Q ss_pred HHCHHHHHHHHHHCCCCC Q ss_conf 206789999976057730 Q gi|254780204|r 39 AETPKIMWKAFKKSSGRW 56 (180) Q Consensus 39 aetpkimwkafkkssgrw 56 (180) .|.||--||.+.|..|-| T Consensus 56 dE~aK~~Wkki~K~~G~~ 73 (130) T d1vr8a1 56 GEEAKKIWKKLNGRAGFV 73 (130) T ss_dssp STTHHHHHHHHHTC---C T ss_pred CCCHHHHHHHHHHHCCCE T ss_conf 833778999998761965 No 7 >d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]} Probab=8.03 E-value=30 Score=13.07 Aligned_cols=13 Identities=31% Similarity=0.619 Sum_probs=10.1 Q ss_pred CCHHCCCCCCCCC Q ss_conf 2000015555320 Q gi|254780204|r 151 PNRYWHTDSASIG 163 (180) Q Consensus 151 ~~RYwhtdsasig 163 (180) -||-||||++.+. T Consensus 77 RN~nWmT~~~Tva 89 (157) T d1knza_ 77 RNRNWLADTSRPA 89 (157) T ss_dssp HHHHHHHCTTHHH T ss_pred HHHHHHHCCCHHH T ss_conf 4055651200798 No 8 >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.15 E-value=70 Score=10.82 Aligned_cols=14 Identities=29% Similarity=0.914 Sum_probs=0.0 Q ss_pred HCCCCCCCCCHHHH Q ss_conf 00155553201210 Q gi|254780204|r 154 YWHTDSASIGFRVP 167 (180) Q Consensus 154 Ywhtdsasigfrvp 167 (180) |||..+..+-..-| T Consensus 18 YWHiptGttQwe~P 31 (33) T d2ho2a1 18 YWHIPTGTTQWEPP 31 (33) T ss_dssp EEETTTTEEESSCC T ss_pred EEEECCCCCCCCCC T ss_conf 88706885413689 No 9 >d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=4.75 E-value=81 Score=10.45 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCC-CHHCC Q ss_conf 999898986052-00001 Q gi|254780204|r 140 QISEFAACLEHP-NRYWH 156 (180) Q Consensus 140 q~sE~~ACL~~~-~RYwh 156 (180) +..++|.+|..| +.||+ T Consensus 185 ~Le~Acehla~yLE~Yw~ 202 (219) T d1t0hb_ 185 QLEDACEHLADYLEAYWK 202 (219) T ss_dssp SHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 358899999999998875 No 10 >d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.62 E-value=84 Score=10.35 Aligned_cols=8 Identities=50% Similarity=0.675 Sum_probs=0.0 Q ss_pred HHHHHCCC Q ss_conf 89860520 Q gi|254780204|r 145 AACLEHPN 152 (180) Q Consensus 145 ~ACL~~~~ 152 (180) .+||++|| T Consensus 26 ~~~L~~Y~ 33 (63) T d2di0a1 26 LACLEYYH 33 (63) T ss_dssp HHHHHHTT T ss_pred HHHHHHHC T ss_conf 99999968 Done!